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For: Shin Y, Brangwynne CP. Liquid phase condensation in cell physiology and disease. Science 2018;357:357/6357/eaaf4382. [PMID: 28935776 DOI: 10.1126/science.aaf4382] [Citation(s) in RCA: 2565] [Impact Index Per Article: 366.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Number Cited by Other Article(s)
101
Tan D, Aierken D, Joseph JA. Interaction networks within biomolecular condensates feature topological cliques near the interface. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.03.25.645354. [PMID: 40196628 PMCID: PMC11974821 DOI: 10.1101/2025.03.25.645354] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 04/09/2025]
102
Jerez-Longres C, Weber W. Metabolite-Responsive Control of Transcription by Phase Separation-Based Synthetic Organelles. ACS Synth Biol 2025;14:711-718. [PMID: 39954260 PMCID: PMC11934134 DOI: 10.1021/acssynbio.4c00633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2024] [Revised: 01/06/2025] [Accepted: 01/31/2025] [Indexed: 02/17/2025]
103
Mangiarotti A, Sabri E, Schmidt KV, Hoffmann C, Milovanovic D, Lipowsky R, Dimova R. Lipid packing and cholesterol content regulate membrane wetting and remodeling by biomolecular condensates. Nat Commun 2025;16:2756. [PMID: 40113768 PMCID: PMC11926106 DOI: 10.1038/s41467-025-57985-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2024] [Accepted: 03/07/2025] [Indexed: 03/22/2025]  Open
104
Feng J, Osmekhina E, Timonen JVI, Linder MB. Effects of Sup35 overexpression on the formation, morphology, and physiological functions of intracellular Sup35 assemblies. Appl Environ Microbiol 2025;91:e0170324. [PMID: 39912644 PMCID: PMC11921396 DOI: 10.1128/aem.01703-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2024] [Accepted: 01/16/2025] [Indexed: 02/07/2025]  Open
105
Zhou L, Zhu L, Wang C, Xu T, Wang J, Zhang B, Zhang X, Wang H. Multiphasic condensates formed with mono-component of tetrapeptides via phase separation. Nat Commun 2025;16:2706. [PMID: 40108179 PMCID: PMC11923152 DOI: 10.1038/s41467-025-58060-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Accepted: 03/12/2025] [Indexed: 03/22/2025]  Open
106
Kim S, Okafor KK, Tabuchi R, Briones C, Lee IH. Phase Separation Clustering of Poly Ubiquitin Cargos on Ternary Mixture Lipid Membranes by Synthetically Cross-Linked Ubiquitin Binder Peptides. Biochemistry 2025;64:1212-1221. [PMID: 40007487 PMCID: PMC11924212 DOI: 10.1021/acs.biochem.4c00483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2024] [Revised: 02/13/2025] [Accepted: 02/18/2025] [Indexed: 02/27/2025]
107
Cao M, Zhang X, Wang X, Zhao D, Shi M, Zou J, Li L, Jiang H. An Overview of Liquid-Liquid Phase Separation and Its Mechanisms in Sepsis. J Inflamm Res 2025;18:3969-3980. [PMID: 40125078 PMCID: PMC11927582 DOI: 10.2147/jir.s513098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2024] [Accepted: 02/22/2025] [Indexed: 03/25/2025]  Open
108
Chiolo I, Altmeyer M, Legube G, Mekhail K. Nuclear and genome dynamics underlying DNA double-strand break repair. Nat Rev Mol Cell Biol 2025:10.1038/s41580-025-00828-1. [PMID: 40097581 DOI: 10.1038/s41580-025-00828-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/21/2025] [Indexed: 03/19/2025]
109
Lu P, Deng B, Li X, Niu X, Qiu Y, Liang Y, Liang Y, Tang G, Yuan Z, Luo G, Kennedy S, Wan G. A nuclear pore-anchored condensate enables germ granule organization and transgenerational epigenetic inheritance. Nat Struct Mol Biol 2025:10.1038/s41594-025-01515-7. [PMID: 40082670 DOI: 10.1038/s41594-025-01515-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 02/10/2025] [Indexed: 03/16/2025]
110
Chen MW, Ren X, Song X, Qian N, Ma Y, Yu W, Yang L, Min W, Zare RN, Dai Y. Transition-State-Dependent Spontaneous Generation of Reactive Oxygen Species by Aβ Assemblies Encodes a Self-Regulated Positive Feedback Loop for Aggregate Formation. J Am Chem Soc 2025;147:8267-8279. [PMID: 39999421 DOI: 10.1021/jacs.4c15532] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/27/2025]
111
Yasuda I, von Bülow S, Tesei G, Yamamoto E, Yasuoka K, Lindorff-Larsen K. Coarse-Grained Model of Disordered RNA for Simulations of Biomolecular Condensates. J Chem Theory Comput 2025;21:2766-2779. [PMID: 40009520 DOI: 10.1021/acs.jctc.4c01646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/28/2025]
112
Kilgore HR, Chinn I, Mikhael PG, Mitnikov I, Van Dongen C, Zylberberg G, Afeyan L, Banani S, Wilson-Hawken S, Lee TI, Barzilay R, Young RA. Protein codes promote selective subcellular compartmentalization. Science 2025;387:1095-1101. [PMID: 39913643 PMCID: PMC12034300 DOI: 10.1126/science.adq2634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2024] [Revised: 11/07/2024] [Accepted: 01/28/2025] [Indexed: 02/12/2025]
113
Emelianova A, Garcia PL, Tan D, Joseph JA. Prediction of small-molecule partitioning into biomolecular condensates from simulation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.03.04.641530. [PMID: 40093099 PMCID: PMC11908252 DOI: 10.1101/2025.03.04.641530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 03/19/2025]
114
Chakravarti A, Joseph JA. Accurate prediction of thermoresponsive phase behavior of disordered proteins. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.03.04.641540. [PMID: 40093057 PMCID: PMC11908177 DOI: 10.1101/2025.03.04.641540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/19/2025]
115
Li G, Yuan C, Yan X. Peptide-mediated liquid-liquid phase separation and biomolecular condensates. SOFT MATTER 2025;21:1781-1812. [PMID: 39964249 DOI: 10.1039/d4sm01477d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/06/2025]
116
Lavoie H, Therrien M. RAS signaling gets granular. Nat Chem Biol 2025:10.1038/s41589-025-01851-1. [PMID: 40038477 DOI: 10.1038/s41589-025-01851-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2025]
117
Lin YH, Kim TH, Das S, Pal T, Wessén J, Rangadurai AK, Kay LE, Forman-Kay JD, Chan HS. Electrostatics of salt-dependent reentrant phase behaviors highlights diverse roles of ATP in biomolecular condensates. eLife 2025;13:RP100284. [PMID: 40028898 PMCID: PMC11875540 DOI: 10.7554/elife.100284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/05/2025]  Open
118
Guo P, Wan S, Guan KL. The Hippo pathway: Organ size control and beyond. Pharmacol Rev 2025;77:100031. [PMID: 40148032 DOI: 10.1016/j.pharmr.2024.100031] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2024] [Accepted: 12/17/2024] [Indexed: 03/29/2025]  Open
119
Muñoz-Velasco I, Herrera-Escamilla AK, Vázquez-Salazar A. Nucleolar origins: challenging perspectives on evolution and function. Open Biol 2025;15:240330. [PMID: 40068812 PMCID: PMC11896706 DOI: 10.1098/rsob.240330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2024] [Revised: 02/05/2025] [Accepted: 02/06/2025] [Indexed: 03/15/2025]  Open
120
Gombás BG, Németh‐Szatmári O, Nagy‐Mikó B, Villányi Z. Role of Assemblysomes in Cellular Stress Responses. WILEY INTERDISCIPLINARY REVIEWS. RNA 2025;16:e70009. [PMID: 40110655 PMCID: PMC11923940 DOI: 10.1002/wrna.70009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Revised: 02/28/2025] [Accepted: 03/01/2025] [Indexed: 03/22/2025]
121
Li Y, Xiao D, Yan W, Jiang M, Tan J, Qin Z, Zhou J, Sun Y, Yang M, Yang G, Gu Y, Liu Y, Zhu C. Bioinspired hierarchical porous tough adhesive to promote sealing of high-pressure bleeding. Bioact Mater 2025;45:88-101. [PMID: 39634058 PMCID: PMC11615148 DOI: 10.1016/j.bioactmat.2024.11.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Revised: 11/03/2024] [Accepted: 11/03/2024] [Indexed: 12/07/2024]  Open
122
Sato S, Iwaki J, Hirabayashi J. Decoding the multifaceted roles of galectins in self-defense. Semin Immunol 2025;77:101926. [PMID: 39721561 DOI: 10.1016/j.smim.2024.101926] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/17/2024] [Revised: 12/13/2024] [Accepted: 12/14/2024] [Indexed: 12/28/2024]
123
Fu D, Song Y, Wu S, Peng Y, Ming Y, Li Z, Zhang X, Song W, Su Z, Gong Z, Yang S, Shi Y. Regulation of alternative splicing by CBF-mediated protein condensation in plant response to cold stress. NATURE PLANTS 2025;11:505-517. [PMID: 40044940 DOI: 10.1038/s41477-025-01933-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2023] [Accepted: 01/31/2025] [Indexed: 03/23/2025]
124
Shapiro DM, Deshpande S, Eghtesadi SA, Zhong M, Fontes CM, Fiflis D, Rohm D, Min J, Kaur T, Peng J, Ney M, Su J, Dai Y, Asokan A, Gersbach CA, Chilkoti A. Synthetic biomolecular condensates enhance translation from a target mRNA in living cells. Nat Chem 2025;17:448-456. [PMID: 39929988 DOI: 10.1038/s41557-024-01706-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2022] [Accepted: 11/27/2024] [Indexed: 02/21/2025]
125
Yang DS, Tilson A, Sherman MB, Varadarajan N, Vekilov PG. Mesoscopic p53-rich clusters represent a new class of protein condensates. BIOPHYSICS REVIEWS 2025;6:011308. [PMID: 40124402 PMCID: PMC11928095 DOI: 10.1063/5.0243722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2024] [Accepted: 02/24/2025] [Indexed: 03/25/2025]
126
Liu L, Ding M, Zheng M, Xu G, Gao L, Yang W, Wei Z, Shang J, Wang L, Wang H, Gao F. Transformable peptide blocks NF-κB/IκBα pathway through targeted coating IκBα against rheumatoid arthritis. Biomaterials 2025;314:122839. [PMID: 39288618 DOI: 10.1016/j.biomaterials.2024.122839] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2024] [Revised: 08/26/2024] [Accepted: 09/12/2024] [Indexed: 09/19/2024]
127
Fatti E, Khawaja S, Weis K. The dark side of fluorescent protein tagging-the impact of protein tags on biomolecular condensation. Mol Biol Cell 2025;36:br10. [PMID: 39878648 PMCID: PMC11974960 DOI: 10.1091/mbc.e24-11-0521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2024] [Revised: 01/10/2025] [Accepted: 01/22/2025] [Indexed: 01/31/2025]  Open
128
Hess N, Joseph JA. Structured protein domains enter the spotlight: modulators of biomolecular condensate form and function. Trends Biochem Sci 2025;50:206-223. [PMID: 39827079 DOI: 10.1016/j.tibs.2024.12.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2024] [Revised: 11/18/2024] [Accepted: 12/11/2024] [Indexed: 01/22/2025]
129
Liu H, Pillai M, Leung AKL. PARPs and ADP-ribosylation-mediated biomolecular condensates: determinants, dynamics, and disease implications. Trends Biochem Sci 2025;50:224-241. [PMID: 39922741 DOI: 10.1016/j.tibs.2024.12.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2024] [Revised: 12/17/2024] [Accepted: 12/20/2024] [Indexed: 02/10/2025]
130
Quek RT, Shirazinejad CR, Young CL, Hardy KS, Lim S, Elms PJ, McSwiggen DT, Mitchison TJ, Silver PA. Comparative evaluation of cell-based assay technologies for scoring drug-induced condensation of SARS-CoV-2 nucleocapsid protein. SLAS DISCOVERY : ADVANCING LIFE SCIENCES R & D 2025;31:100220. [PMID: 39894078 DOI: 10.1016/j.slasd.2025.100220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2024] [Revised: 01/23/2025] [Accepted: 01/30/2025] [Indexed: 02/04/2025]
131
Song H, Cui J, Hu G, Xiong L, Wutthinitikornkit Y, Lei H, Li J. Scale-free Spatio-temporal Correlations in Conformational Fluctuations of Intrinsically Disordered Proteins. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2025;12:e2412989. [PMID: 39807013 PMCID: PMC11884614 DOI: 10.1002/advs.202412989] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Revised: 12/21/2024] [Indexed: 01/16/2025]
132
Gordon R, Levenson R, Malady B, Al Sabeh Y, Nguyen A, Morse DE. Charge screening and hydrophobicity drive progressive assembly and liquid-liquid phase separation of reflectin protein. J Biol Chem 2025;301:108277. [PMID: 39922493 PMCID: PMC11927725 DOI: 10.1016/j.jbc.2025.108277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2024] [Revised: 01/17/2025] [Accepted: 01/27/2025] [Indexed: 02/10/2025]  Open
133
Pei G, Lyons H, Li P, Sabari BR. Transcription regulation by biomolecular condensates. Nat Rev Mol Cell Biol 2025;26:213-236. [PMID: 39516712 DOI: 10.1038/s41580-024-00789-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/30/2024] [Indexed: 11/16/2024]
134
Kinghorn AB, Guo W, Wang L, Tang MYH, Wang F, Shiu SC, Lau KK, Jinata C, Poonam AD, Shum HC, Tanner JA. Evolution Driven Microscale Combinatorial Chemistry in Intracellular Mimicking Droplets to Engineer Thermostable RNA for Cellular Imaging. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2025;21:e2409911. [PMID: 39865936 PMCID: PMC11878259 DOI: 10.1002/smll.202409911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2024] [Revised: 01/01/2025] [Indexed: 01/28/2025]
135
Kobayashi M, Minagawa Y, Noji H. Metastable phase-separated droplet generation and long-time DNA enrichment by laser-induced Soret effect. Commun Chem 2025;8:61. [PMID: 40021810 PMCID: PMC11871339 DOI: 10.1038/s42004-025-01438-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2024] [Accepted: 01/28/2025] [Indexed: 03/03/2025]  Open
136
Zan N, Li J, Yao J, Wu S, Li J, Chen F, Song B, Song R. Rational design of phytovirucide inhibiting nucleocapsid protein aggregation in tomato spotted wilt virus. Nat Commun 2025;16:2034. [PMID: 40016246 PMCID: PMC11868578 DOI: 10.1038/s41467-025-57281-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Accepted: 02/17/2025] [Indexed: 03/01/2025]  Open
137
Chowdhary S, Paracha S, Dyer L, Pincus D. Emergent 3D genome reorganization from the stepwise assembly of transcriptional condensates. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.02.23.639564. [PMID: 40060634 PMCID: PMC11888319 DOI: 10.1101/2025.02.23.639564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 03/20/2025]
138
Wang MF, Li MY, Yang YC, Chuang YC, Tsai CY, Binder MC, Ma L, Lin SW, Li HW, Smith G, Chi P. Mug20-Rec25-Rec27 binds DNA and enhances meiotic DNA break formation via phase-separated condensates. Nucleic Acids Res 2025;53:gkaf123. [PMID: 40037704 PMCID: PMC11879393 DOI: 10.1093/nar/gkaf123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Revised: 01/26/2025] [Accepted: 02/07/2025] [Indexed: 03/06/2025]  Open
139
R. Tejedor A, Aguirre Gonzalez A, Maristany MJ, Chew PY, Russell K, Ramirez J, Espinosa JR, Collepardo-Guevara R. Chemically Informed Coarse-Graining of Electrostatic Forces in Charge-Rich Biomolecular Condensates. ACS CENTRAL SCIENCE 2025;11:302-321. [PMID: 40028356 PMCID: PMC11869137 DOI: 10.1021/acscentsci.4c01617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/26/2024] [Revised: 01/10/2025] [Accepted: 01/24/2025] [Indexed: 03/05/2025]
140
Jussupow A, Bartley D, Lapidus LJ, Feig M. COCOMO2: A Coarse-Grained Model for Interacting Folded and Disordered Proteins. J Chem Theory Comput 2025;21:2095-2107. [PMID: 39908323 PMCID: PMC11866933 DOI: 10.1021/acs.jctc.4c01460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2024] [Revised: 01/24/2025] [Accepted: 01/31/2025] [Indexed: 02/07/2025]
141
Sahu N, Guchhait C, Mohanta I, Suriyaa V, Adhikari B. Cu(I)-Induced G-Quartets: Robust Supramolecular Polymers Exhibiting Heating-Induced Aqueous Phase Transitions Into Gel or Precipitate. Angew Chem Int Ed Engl 2025;64:e202417508. [PMID: 39832125 DOI: 10.1002/anie.202417508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2024] [Revised: 12/29/2024] [Accepted: 01/17/2025] [Indexed: 01/22/2025]
142
Khandwala CB, Sarkar P, Schmidt HB, Ma M, Pusapati GV, Lamoliatte F, Kinnebrew M, Patel BB, Tillo D, Lebensohn AM, Rohatgi R. Direct ionic stress sensing and mitigation by the transcription factor NFAT5. SCIENCE ADVANCES 2025;11:eadu3194. [PMID: 39970224 PMCID: PMC11838016 DOI: 10.1126/sciadv.adu3194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2024] [Accepted: 01/14/2025] [Indexed: 02/21/2025]
143
Ding M, Wang D, Chen H, Kesner B, Grimm NB, Weissbein U, Lappala A, Jiang J, Rivera C, Lou J, Li P, Lee JT. A biophysical basis for the spreading behavior and limited diffusion of Xist. Cell 2025;188:978-997.e25. [PMID: 39824183 PMCID: PMC11863002 DOI: 10.1016/j.cell.2024.12.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2024] [Revised: 11/04/2024] [Accepted: 12/06/2024] [Indexed: 01/20/2025]
144
Ahn JH, Guo Y, Lyons H, Mackintosh SG, Lau BK, Edmondson RD, Byrum SD, Storey AJ, Tackett AJ, Cai L, Sabari BR, Wang GG. The phenylalanine-and-glycine repeats of NUP98 oncofusions form condensates that selectively partition transcriptional coactivators. Mol Cell 2025;85:708-725.e9. [PMID: 39922194 DOI: 10.1016/j.molcel.2024.12.026] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Revised: 10/21/2024] [Accepted: 12/30/2024] [Indexed: 02/10/2025]
145
Arbiol Enguita AM, Zöller L, Tomberg T, Heikkilä MJ, Saarinen JKS, Wurr L, Konings T, Correia A, Saal C, Dressman J, Strachan CJ. Chemically Specific Coherent Raman Imaging of Liquid-Liquid Phase Separation and Its Sequelae. Anal Chem 2025;97:3242-3252. [PMID: 39918270 PMCID: PMC11840799 DOI: 10.1021/acs.analchem.4c03923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2024] [Revised: 01/31/2025] [Accepted: 01/31/2025] [Indexed: 02/19/2025]
146
Song S, Ivanov T, Doan-Nguyen TP, da Silva LC, Xie J, Landfester K, Cao S. Synthetic Biomolecular Condensates: Phase-Separation Control, Cytomimetic Modelling and Emerging Biomedical Potential. Angew Chem Int Ed Engl 2025;64:e202418431. [PMID: 39575859 DOI: 10.1002/anie.202418431] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2024] [Indexed: 01/24/2025]
147
Kong H, Xie X, Bao Y, Zhang F, Bian L, Cheng K, Zhao Y, Xia J. Phase-Separated Spiropyran Coacervates as Dual-Wavelength-Switchable Reactive Oxygen Generators. Angew Chem Int Ed Engl 2025;64:e202419538. [PMID: 39746885 PMCID: PMC11833283 DOI: 10.1002/anie.202419538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2024] [Revised: 01/02/2025] [Accepted: 01/02/2025] [Indexed: 01/04/2025]
148
Duan Z, Lian G, Duan C, Lou X, Huang F, Xia F. Comprehensive review of protein imaging with AIEgens conjugated probes: From concentration to conformation. Biosens Bioelectron 2025;270:116979. [PMID: 39613513 DOI: 10.1016/j.bios.2024.116979] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Revised: 09/28/2024] [Accepted: 11/19/2024] [Indexed: 12/01/2024]
149
Ventura-Gomes A, Carmo-Fonseca M. The spatial choreography of mRNA biosynthesis. J Cell Sci 2025;138:JCS263504. [PMID: 40019352 DOI: 10.1242/jcs.263504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/01/2025]  Open
150
Maristany MJ, Gonzalez AA, Espinosa JR, Huertas J, Collepardo-Guevara R, Joseph JA. Decoding phase separation of prion-like domains through data-driven scaling laws. eLife 2025;13:RP99068. [PMID: 39937084 PMCID: PMC11820118 DOI: 10.7554/elife.99068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/13/2025]  Open
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