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For: Gurevich A, Saveliev V, Vyahhi N, Tesler G. QUAST: quality assessment tool for genome assemblies. ACTA ACUST UNITED AC 2013;29:1072-5. [PMID: 23422339 DOI: 10.1093/bioinformatics/btt086] [Citation(s) in RCA: 6436] [Impact Index Per Article: 536.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Number Cited by Other Article(s)
151
Liang H, Zou Y, Wang M, Hu T, Wang H, He W, Ju Y, Guo R, Chen J, Guo F, Zeng T, Dong Y, Zhang Y, Wang B, Liu C, Jin X, Zhang W, Xu X, Xiao L. Efficiently constructing complete genomes with CycloneSEQ to fill gaps in bacterial draft assemblies. GIGABYTE 2025;2025:gigabyte154. [PMID: 40329937 PMCID: PMC12051259 DOI: 10.46471/gigabyte.154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2024] [Accepted: 04/22/2025] [Indexed: 05/08/2025]  Open
152
Yang YQ, Li X, Wang ZF, Deng YL, Wang ZZ, Fang XY, Zhang MD, Sun W, Zhao XQ, Liu ZQ, Zhang FL. Whole Genome Sequencing of Kodamaea ohmeri SSK and Its Characterization for Degradation of Inhibitors from Lignocellulosic Biomass. BIOLOGY 2025;14:458. [PMID: 40427648 PMCID: PMC12109290 DOI: 10.3390/biology14050458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/02/2025] [Revised: 04/11/2025] [Accepted: 04/18/2025] [Indexed: 05/29/2025]
153
Hakimi M, Ye F, Saxena A, Hu X, Shen H, Elankumaran P, Stinman CC, Macedo N, Sahin O, Burrough ER, Li G. Genomic insights into the population structure, antimicrobial resistance, and virulence of Brachyspira hyodysenteriae from diverse geographical regions. Microbiol Spectr 2025:e0338624. [PMID: 40272172 DOI: 10.1128/spectrum.03386-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2025] [Accepted: 04/04/2025] [Indexed: 04/25/2025]  Open
154
Ayoub H, Kumar MS, Mehta R, Sethuraj SE, Thomas P, Dhanze H, Dubey M, Salih HM, Chandrashekaraiah GB, Cull CA, Veeranna RP, Amachawadi RG. Genomic insights into Brucella melitensis in India: stability of ST8 and the role of virulence genes in regional adaptations. Microbiol Spectr 2025:e0264724. [PMID: 40272150 DOI: 10.1128/spectrum.02647-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2024] [Accepted: 03/23/2025] [Indexed: 04/25/2025]  Open
155
Sun Y, Cai Q, Li T, Chen J, Fang Y. Genome assembly of Klebsiella michiganensis based on metagenomic next-generation sequencing reveals its genomic characteristics in population genetics and molecular epidemiology. Front Microbiol 2025;16:1546594. [PMID: 40342595 PMCID: PMC12058774 DOI: 10.3389/fmicb.2025.1546594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2024] [Accepted: 04/02/2025] [Indexed: 05/11/2025]  Open
156
Alnaimat SM, Abushattal S, Dmour SM, Al-Awaida WJ, Ayyash AM, Goh KW. Genomic insights into the taxonomic status and bioactive gene cluster profiling of Bacillus velezensis RVMD2 isolated from desert rock varnish in Ma'an, Jordan. PLoS One 2025;20:e0319345. [PMID: 40273114 PMCID: PMC12021177 DOI: 10.1371/journal.pone.0319345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2024] [Accepted: 01/30/2025] [Indexed: 04/26/2025]  Open
157
Chaggar HK, Hudson LK, Orejuela K, Thomas L, Spann M, Garman KN, Dunn JR, Denes TG. Salmonella enterica serovar Braenderup shows clade-specific source associations and a high proportion of molecular epidemiological clustering. Appl Environ Microbiol 2025;91:e0259424. [PMID: 40116507 PMCID: PMC12016519 DOI: 10.1128/aem.02594-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2025] [Accepted: 01/24/2025] [Indexed: 03/23/2025]  Open
158
Foysal MJ, Neilan BA, Timms V. The impact of anthropogenic activities on antimicrobial and heavy metal resistance in aquatic environments. Appl Environ Microbiol 2025;91:e0231724. [PMID: 40071918 PMCID: PMC12016542 DOI: 10.1128/aem.02317-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2024] [Accepted: 02/18/2025] [Indexed: 04/24/2025]  Open
159
Ivanova M, Laage Kragh M, Szarvas J, Tosun ES, Holmud NF, Gmeiner A, Amar C, Guldimann C, Huynh TN, Karpíšková R, Rota C, Gomez D, Aboagye E, Etter A, Centorame P, Torresi M, De Angelis ME, Pomilio F, Okholm AH, Xiao Y, Kleta S, Lüth S, Pietzka A, Kovacevic J, Pagotto F, Rychli K, Zdovc I, Papić B, Heir E, Langsrud S, Møretrø T, Brown P, Kathariou S, Stephan R, Tasara T, Dalgaard P, Njage PMK, Fagerlund A, Aarestrup F, Truelstrup Hansen L, Leekitcharoenphon P. Large-scale phenotypic and genomic analysis of Listeria monocytogenes reveals diversity in the sensitivity to quaternary ammonium compounds but not to peracetic acid. Appl Environ Microbiol 2025;91:e0182924. [PMID: 40035557 PMCID: PMC12016499 DOI: 10.1128/aem.01829-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2024] [Accepted: 02/05/2025] [Indexed: 03/05/2025]  Open
160
Kaminsky LM, Burghardt L, Bell TH. Evolving a plant-beneficial bacterium in soil vs. nutrient-rich liquid culture has contrasting effects on in-soil fitness. Appl Environ Microbiol 2025;91:e0208524. [PMID: 40067020 PMCID: PMC12016532 DOI: 10.1128/aem.02085-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2024] [Accepted: 02/12/2025] [Indexed: 04/24/2025]  Open
161
Gao FZ, Hu LX, Liu YS, Yang HY, He LY, Bai H, Liu F, Jin XW, Ying GG. Unveiling the prevalence of metal resistance genes and their associations with antibiotic resistance genes in heavy metal-contaminated rivers. WATER RESEARCH 2025;281:123699. [PMID: 40280009 DOI: 10.1016/j.watres.2025.123699] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2024] [Revised: 04/15/2025] [Accepted: 04/21/2025] [Indexed: 04/29/2025]
162
Chi W, Zhang H, Li X, Zhou Y, Meng Q, He L, Yang Y, Liu S, Shi K. Comparative genomic analysis of 255 Oenococcus oeni isolates from China: unveiling strain diversity and genotype-phenotype associations of acid resistance. Microbiol Spectr 2025:e0326524. [PMID: 40261018 DOI: 10.1128/spectrum.03265-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2024] [Accepted: 03/17/2025] [Indexed: 04/24/2025]  Open
163
Zhang H, Yamamoto E, Markell A, Carrillo C, Locas A. Prevalence of Shiga Toxin-Producing Escherichia coli (STEC) and Risk Characterization Based on Virulence Genes in Retail Raw Ground Meat of Beef, Veal, and Lamb in Canada. J Food Prot 2025;88:100483. [PMID: 40081812 DOI: 10.1016/j.jfp.2025.100483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2024] [Revised: 02/24/2025] [Accepted: 03/08/2025] [Indexed: 03/16/2025]
164
Liu B, Niu X, Zhang C, Zheng S, Gao L, Han M, Feng T, Wu J, Jiang C, Kang S, Xu D, Liu Y. Chromosome-level genome assembly and annotation of Chinese herring (Ilisha elongata). Sci Data 2025;12:668. [PMID: 40258812 PMCID: PMC12012206 DOI: 10.1038/s41597-025-04790-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2024] [Accepted: 03/07/2025] [Indexed: 04/23/2025]  Open
165
Bozkurt EB, Baysal Ö, Marzec-Grządziel A, Silme RS, Can A, Belen İN, Çapar Ü, Korkut A. Genomic Characterization of Serratia fonticola (EBS19) as a Biocontrol Agent against Botrytis cinerea. Curr Microbiol 2025;82:252. [PMID: 40252089 DOI: 10.1007/s00284-025-04224-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2024] [Accepted: 04/01/2025] [Indexed: 04/21/2025]
166
Bini F, Soffritti I, D'Accolti M, Mazziga E, Caballero JD, David S, Argimon S, Aanensen DM, Volta A, Bisi M, Mazzacane S, Caselli E. Profiling the resistome and virulome of Bacillus strains used for probiotic-based sanitation: a multicenter WGS analysis. BMC Genomics 2025;26:382. [PMID: 40251489 PMCID: PMC12007294 DOI: 10.1186/s12864-025-11582-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2024] [Accepted: 04/08/2025] [Indexed: 04/20/2025]  Open
167
de Mattos JS, Keepers K, Innes PA, de Mesquita CPB, Quandt CA, Kane NC, Brandvain Y, Turner K. The first chromosome-scale genome assembly of a microcyclic rust, Puccinia silphii. BMC Genomics 2025;26:390. [PMID: 40251471 PMCID: PMC12007239 DOI: 10.1186/s12864-025-11593-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2024] [Accepted: 04/10/2025] [Indexed: 04/20/2025]  Open
168
PALOMINO HUARCAYA ROGERA, Castillo-Vilcahuaman C, Martel-Torres SB, Merino Rafael FA, Gutiérrez Moreno SM. Comparative Genomics of Rhamnolipid Synthesis and Monoaromatic Hydrocarbon Tolerance Genes in Environmental Pseudomonas aeruginosa strains. F1000Res 2025;13:1519. [PMID: 40297566 PMCID: PMC12035672 DOI: 10.12688/f1000research.158761.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 03/24/2025] [Indexed: 04/30/2025]  Open
169
Schell T, Greve C, Podsiadlowski L. Establishing genome sequencing and assembly for non-model and emerging model organisms: a brief guide. Front Zool 2025;22:7. [PMID: 40247279 PMCID: PMC12004614 DOI: 10.1186/s12983-025-00561-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2024] [Accepted: 03/23/2025] [Indexed: 04/19/2025]  Open
170
Pinto OHB, Biazotti BB, de Souza RSC, Yassitepe JÉDCT, Arruda P, Dante RA, Gerhardt IR. Seasonal bacterial profiles of Vellozia with distinct drought adaptations in the megadiverse campos rupestres. Sci Data 2025;12:636. [PMID: 40240384 PMCID: PMC12003806 DOI: 10.1038/s41597-025-04984-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2024] [Accepted: 04/10/2025] [Indexed: 04/18/2025]  Open
171
Di Pierro F, Sagheddu V, Galletti S, Casaroli A, Labrini E, Soldi S, Cazzaniga M, Bertuccioli A, Matera M, Cavecchia I, Palazzi CM, Tanda ML, Zerbinati N. Selection, Comparative Genomics, and Potential Probiotic Features of Escherichia coli 5C, a pks-Negative Strain Isolated from Healthy Infant Donor Feces. Probiotics Antimicrob Proteins 2025:10.1007/s12602-025-10522-5. [PMID: 40238037 DOI: 10.1007/s12602-025-10522-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/10/2025] [Indexed: 04/18/2025]
172
Nebenführ M, Hamadou AB, Aguilar A, Borrell A, Gkafas GA, Janke A. Mediterranean monk seal (Monachus monachus) and leopard seal (Hydrurga leptonyx) de novo genomes to study the demographic history and genetic diversity of southern seals. BMC Biol 2025;23:102. [PMID: 40241156 PMCID: PMC12004778 DOI: 10.1186/s12915-025-02207-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2024] [Accepted: 04/04/2025] [Indexed: 04/18/2025]  Open
173
Guo D, Li Y, Lu H, Zhao Y, Kurata N, Wei X, Wang A, Wang Y, Zhan Q, Fan D, Zhou C, Lu Y, Tian Q, Weng Q, Feng Q, Huang T, Zhang L, Gu Z, Wang C, Wang Z, Wang Z, Huang X, Zhao Q, Han B. A pangenome reference of wild and cultivated rice. Nature 2025:10.1038/s41586-025-08883-6. [PMID: 40240605 DOI: 10.1038/s41586-025-08883-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Accepted: 03/11/2025] [Indexed: 04/18/2025]
174
Shi C, Gu M, Huang Y, You C, Bao S, Xie S, Gong J, Deng G, Wu P, Wu W, Zhu C, Sun X, Zeng J. Integrated genomic and transcriptomic analysis reveals the mechanisms underlying leaf variegation in 'Gonggan' mandarin. BMC PLANT BIOLOGY 2025;25:472. [PMID: 40229686 PMCID: PMC11998453 DOI: 10.1186/s12870-025-06496-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2025] [Accepted: 04/01/2025] [Indexed: 04/16/2025]
175
Carmona-Salido H, López-Solís S, López-Hontangas JL, Amaro C. First Report of a Fatal Septicemia Case Caused by Vibrio metoecus: A Comprehensive Functional and Genomic Study. J Infect Dis 2025;231:894-901. [PMID: 39405190 DOI: 10.1093/infdis/jiae481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2024] [Accepted: 09/26/2024] [Indexed: 04/17/2025]  Open
176
Salvà-Serra F, Nimje P, Piñeiro-Iglesias B, Alarcón LA, Cardew S, Inganäs E, Jensie-Markopoulos S, Ohlén M, Sailer HS, Unosson C, Fernández-Juárez V, Pacherres CO, Kühl M, Moore ERB, Marathe NP. Description of Pseudomonas imrae sp. nov., carrying a novel class C β-lactamase gene variant, isolated from gut samples of Atlantic mackerel (Scomber scombrus). Front Microbiol 2025;16:1530878. [PMID: 40336828 PMCID: PMC12057487 DOI: 10.3389/fmicb.2025.1530878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2024] [Accepted: 03/18/2025] [Indexed: 05/09/2025]  Open
177
Luo Q, Chang M, Lu P, Guo Q, Jiang X, Xiao T, Zhang H, Ma Y, Zhang Y, Yu W, Zhang E, Chen Y, Shen P, Ji J, Ying C, Liu Z, Zhu H, Xiao Y. Genomic epidemiology and phylodynamics of Acinetobacter baumannii bloodstream isolates in China. Nat Commun 2025;16:3536. [PMID: 40229304 PMCID: PMC11997098 DOI: 10.1038/s41467-025-58772-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2024] [Accepted: 04/01/2025] [Indexed: 04/16/2025]  Open
178
Chakravarty S, Logsdon G, Lonardi S. RAmbler resolves complex repeats in human Chromosomes 8, 19, and X. Genome Res 2025;35:863-876. [PMID: 40037839 PMCID: PMC12047272 DOI: 10.1101/gr.279308.124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Accepted: 02/06/2025] [Indexed: 03/06/2025]
179
Gutiérrez R, Elizondo-Álvarez T, Ramírez-Cardoce M, Duarte-Martínez F, Cordero-Laurent E, Segura-Retana E, Cascante-Serrano D, Walters-Mais R, Melano RG, Jiménez-Pearson MA. First identification and whole-genome characterization of human-associated Enterobacter roggenkampii and Enterobacter sichuanensis carrying blaIMI-4 carbapenemase in Costa Rica. J Glob Antimicrob Resist 2025;43:68-75. [PMID: 40239923 DOI: 10.1016/j.jgar.2025.04.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2024] [Revised: 04/04/2025] [Accepted: 04/10/2025] [Indexed: 04/18/2025]  Open
180
Kocer K, Göpel L, Gisch S, Tueffers L, Hauswaldt S, Rupp J, Boutin S, Nurjadi D. Detection of a novel SME-6 Carbapenemase in Serratia ureilytica in Germany. J Antimicrob Chemother 2025:dkaf121. [PMID: 40219834 DOI: 10.1093/jac/dkaf121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2025] [Accepted: 03/28/2025] [Indexed: 04/14/2025]  Open
181
He T, Li X, Flores-Vallejo RDC, Radu AM, van Dijl JM, Haslinger K. The endophytic fungus Cosmosporella sp. VM-42 from Vinca minor is a source of bioactive compounds with potent activity against drug-resistant bacteria. CURRENT RESEARCH IN MICROBIAL SCIENCES 2025;8:100390. [PMID: 40297407 PMCID: PMC12036058 DOI: 10.1016/j.crmicr.2025.100390] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/30/2025]  Open
182
Chemao-Elfihri MW, Hakmi M, Abbou H, Kartti S, Fahime EE, Belyamani L, Boutayeb S. Staphylococcus hominis as a source of antimicrobial peptides: identification of a new peptide with potential antimicrobial properties using in silico approach. Arch Microbiol 2025;207:119. [PMID: 40214775 DOI: 10.1007/s00203-025-04323-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2025] [Revised: 03/28/2025] [Accepted: 03/31/2025] [Indexed: 04/30/2025]
183
Kim J, Han A, Chu KH. Draft genomes of three bacteria capable of growing on cocamidopropyl betaine or N,N,N-trimethylglycine (betaine): Cupriavidus sp. CuC1, Variovorax sp. VaC1, and Pseudomonas sp. PsB. Microbiol Resour Announc 2025;14:e0126924. [PMID: 40062870 PMCID: PMC11984117 DOI: 10.1128/mra.01269-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2024] [Accepted: 02/06/2025] [Indexed: 04/11/2025]  Open
184
London LY, Lim CH, Modliszewski JL, Siddiqui NY, Sysoeva TA. Draft genomes of Klebsiella pneumoniae and Streptococcus anginosus strains found in the urine of the same female patient. Microbiol Resour Announc 2025;14:e0131124. [PMID: 40047509 PMCID: PMC11984145 DOI: 10.1128/mra.01311-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2024] [Accepted: 02/07/2025] [Indexed: 04/11/2025]  Open
185
Kumar M, Sayavedra L, Baker DJ, Shouche YS, Narbad A. Genome sequence of Eubacterium callanderi AM6, isolated from a Parkinson's disease patient. Microbiol Resour Announc 2025;14:e0003925. [PMID: 40079595 PMCID: PMC11984119 DOI: 10.1128/mra.00039-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2025] [Accepted: 03/02/2025] [Indexed: 03/15/2025]  Open
186
Heng YC, Lee JKY, Lim ACH, Kittelmann S. Draft genome sequences of a strain of Clostridium neuense and four Candidatus Clostridium species. Microbiol Resour Announc 2025;14:e0127424. [PMID: 40111070 PMCID: PMC11984146 DOI: 10.1128/mra.01274-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2024] [Accepted: 02/03/2025] [Indexed: 03/22/2025]  Open
187
Smith J, Manou M, Milgram J, Hoey S, Warde S, Kirby B, Gordon SV, Kenny K, Kelly PA. Complete genome and transcriptome of Mycobacterium bovis 3488, a clinical isolate with a novel deletion at the RD1 locus. Microbiol Resour Announc 2025;14:e0083724. [PMID: 40062876 PMCID: PMC11984153 DOI: 10.1128/mra.00837-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2024] [Accepted: 01/09/2025] [Indexed: 04/11/2025]  Open
188
Passos GS, Pellegrinetti TA, Fiore MF. Metagenome-assembled bacterial genomes from long accurate reads associated with Capilliphycus salinus ALCB114379. Microbiol Resour Announc 2025;14:e0080724. [PMID: 40079640 PMCID: PMC11984139 DOI: 10.1128/mra.00807-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2024] [Accepted: 02/07/2025] [Indexed: 03/15/2025]  Open
189
Kim JS, Seo CW, Lim YW. Draft genome sequences of five glacial fungi from Styx Glacier, Antarctica. Microbiol Resour Announc 2025;14:e0117524. [PMID: 40013813 PMCID: PMC11984203 DOI: 10.1128/mra.01175-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2024] [Accepted: 02/07/2025] [Indexed: 02/28/2025]  Open
190
Lautert-Dutra W, dos Santos FM, Pasinato Napp A, Lovato Melo C. Draft genome sequence of Vreelandella stevensii strain BS235 isolated from hypersaline lakes from Brazilian pantanal. Microbiol Resour Announc 2025;14:e0074824. [PMID: 40079592 PMCID: PMC11984170 DOI: 10.1128/mra.00748-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Accepted: 01/16/2025] [Indexed: 03/15/2025]  Open
191
Dasgupta A, Saikia R, Kakoti BB, Handique PJ. Draft genome sequence of benzo[a]pyrene degrading Bacillus altitudinis strain AR19 isolated from Digboi oil refinery (India). Microbiol Resour Announc 2025;14:e0095724. [PMID: 40079616 PMCID: PMC11984180 DOI: 10.1128/mra.00957-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2024] [Accepted: 02/15/2025] [Indexed: 03/15/2025]  Open
192
Carascal MB, Gonzales JEM, Tañedo MMJT, Papa DMD, Destura RV, Henson KER. Draft genomes of six methicillin-resistant Staphylococcus aureus in a Philippine tertiary hospital with insights on putative antimicrobial and phage resistance mechanisms. Microbiol Resour Announc 2025;14:e0009725. [PMID: 39998186 PMCID: PMC11984118 DOI: 10.1128/mra.00097-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2025] [Accepted: 02/05/2025] [Indexed: 02/26/2025]  Open
193
Lantican NB, Barredo GAT, Rosana AR, Siababa ACS, Montecillo AD. Draft genomes of five putative biosurfactant-producing Serratia sp. isolates from Laguna de Bay, Philippines. Microbiol Resour Announc 2025;14:e0126824. [PMID: 40062877 PMCID: PMC11984192 DOI: 10.1128/mra.01268-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2024] [Accepted: 02/07/2025] [Indexed: 04/11/2025]  Open
194
Rodriguez-Grados PM, Arbizu CI, Castillo G, Camel V, Conteras-Liza S. Draft genome sequence of the Serratia liquefaciens strain UNJFSC002, isolated from the soil of a potato field of the Bicentenaria variety. Microbiol Resour Announc 2025;14:e0049524. [PMID: 39998198 PMCID: PMC11984176 DOI: 10.1128/mra.00495-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Accepted: 02/04/2025] [Indexed: 02/26/2025]  Open
195
Goddard M, Leiva S. Draft genome sequence of a novel species of Radiobacillus (strain PE A8.2) isolated from a red Antarctic seaweed. Microbiol Resour Announc 2025;14:e0127624. [PMID: 40047494 PMCID: PMC11984126 DOI: 10.1128/mra.01276-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2024] [Accepted: 02/10/2025] [Indexed: 04/11/2025]  Open
196
Ho D, Gali S, Phua HH, Seabra N, Cutfield WS, O'Sullivan JM, the Gut Bugs Study GroupWilsonBrooke C.LeongKarenPortlockTheoAlbertBenPookChrisCreaghChristineSvirskisDarren M.HollandDavidDayFrankieVickersMarkDepczynskiMarysiaEdwardsTaygenFreudlspergerSteffiCatoRoseOkanLilaJayasingheThiliniChiavaroliValentinaSchierdingWilliamConlonCathrynJiangYannan, Pahalagedara ASNW. Complete genome sequence of Escherichia marmotae F12YCO47 isolated from a healthy human fecal sample. Microbiol Resour Announc 2025;14:e0124124. [PMID: 40130925 PMCID: PMC12017327 DOI: 10.1128/mra.01241-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2024] [Accepted: 02/24/2025] [Indexed: 03/26/2025]  Open
197
Al-Shiti AY, Faisal RM, Salih TS, Zylstra GJ. Draft genome sequence of the naphthalene-degrading bacterium Rhodococcus pyridinivorans RA1 isolated from an industrial soil sample in Mosul, Iraq. Microbiol Resour Announc 2025;14:e0061124. [PMID: 40105338 PMCID: PMC11984159 DOI: 10.1128/mra.00611-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Accepted: 01/04/2025] [Indexed: 03/20/2025]  Open
198
Moreland RB, Choi BI, Fontes Noronha M, Baker J, Kaindl J, Wolfe AJ. Complete genome sequence of Trueperella bernardiae strain UMB8254, isolated from the bladder of a female with metabolic syndrome and nephrolithiasis. Microbiol Resour Announc 2025;14:e0126524. [PMID: 40116497 PMCID: PMC11984175 DOI: 10.1128/mra.01265-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2024] [Accepted: 02/13/2025] [Indexed: 03/23/2025]  Open
199
Alam M, Hassan T, Nizami TA, Akter L, Rakib TM. Draft genome sequences of four lactic acid bacteria from fermented chicken meat unveil biosynthetic gene clusters for antimicrobial compounds. Microbiol Resour Announc 2025;14:e0003825. [PMID: 40062850 PMCID: PMC11984134 DOI: 10.1128/mra.00038-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2025] [Accepted: 02/07/2025] [Indexed: 04/11/2025]  Open
200
Ma Z, Liu F, Tsui CKM, Cai L. Phylogenomics and adaptive evolution of the Colletotrichum gloeosporioides species complex. Commun Biol 2025;8:593. [PMID: 40204844 PMCID: PMC11982366 DOI: 10.1038/s42003-025-08024-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2024] [Accepted: 03/31/2025] [Indexed: 04/11/2025]  Open
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