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For: Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Glastad KM, Hagen DE, Viljakainen L, Reese JT, Hunt BG, Graur D, Elhaik E, Kriventseva EV, Wen J, Parker BJ, Cash E, Privman E, Childers CP, Muñoz-Torres MC, Boomsma JJ, Bornberg-Bauer E, Currie CR, Elsik CG, Suen G, Goodisman MAD, Keller L, Liebig J, Rawls A, Reinberg D, Smith CD, Smith CR, Tsutsui N, Wurm Y, Zdobnov EM, Berger SL, Gadau J. Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality. Genome Res 2013;23:1235-47. [PMID: 23636946 PMCID: PMC3730098 DOI: 10.1101/gr.155408.113] [Citation(s) in RCA: 170] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Number Cited by Other Article(s)
151
Waterhouse RM. A maturing understanding of the composition of the insect gene repertoire. CURRENT OPINION IN INSECT SCIENCE 2015;7:15-23. [PMID: 32846661 DOI: 10.1016/j.cois.2015.01.004] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2014] [Accepted: 01/07/2015] [Indexed: 06/11/2023]
152
Mikheyev AS, Linksvayer TA. Genes associated with ant social behavior show distinct transcriptional and evolutionary patterns. eLife 2015;4:e04775. [PMID: 25621766 PMCID: PMC4383337 DOI: 10.7554/elife.04775] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2014] [Accepted: 01/23/2015] [Indexed: 11/24/2022]  Open
153
Yan H, Bonasio R, Simola DF, Liebig J, Berger SL, Reinberg D. DNA methylation in social insects: how epigenetics can control behavior and longevity. ANNUAL REVIEW OF ENTOMOLOGY 2015;60:435-52. [PMID: 25341091 DOI: 10.1146/annurev-ento-010814-020803] [Citation(s) in RCA: 94] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
154
Park D, Jung JW, Choi BS, Jayakodi M, Lee J, Lim J, Yu Y, Choi YS, Lee ML, Park Y, Choi IY, Yang TJ, Edwards OR, Nah G, Kwon HW. Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing. BMC Genomics 2015;16:1. [PMID: 25553907 PMCID: PMC4326529 DOI: 10.1186/1471-2164-16-1] [Citation(s) in RCA: 469] [Impact Index Per Article: 46.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2014] [Accepted: 12/02/2014] [Indexed: 12/03/2022]  Open
155
Molodtsova D, Harpur BA, Kent CF, Seevananthan K, Zayed A. Pleiotropy constrains the evolution of protein but not regulatory sequences in a transcription regulatory network influencing complex social behaviors. Front Genet 2014;5:431. [PMID: 25566318 PMCID: PMC4275039 DOI: 10.3389/fgene.2014.00431] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2014] [Accepted: 11/21/2014] [Indexed: 11/13/2022]  Open
156
Berens AJ, Hunt JH, Toth AL. Comparative Transcriptomics of Convergent Evolution: Different Genes but Conserved Pathways Underlie Caste Phenotypes across Lineages of Eusocial Insects. Mol Biol Evol 2014;32:690-703. [DOI: 10.1093/molbev/msu330] [Citation(s) in RCA: 132] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
157
Helmkampf M, Cash E, Gadau J. Evolution of the insect desaturase gene family with an emphasis on social Hymenoptera. Mol Biol Evol 2014;32:456-71. [PMID: 25425561 PMCID: PMC4298175 DOI: 10.1093/molbev/msu315] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
158
Elhaik E, Graur D. A comparative study and a phylogenetic exploration of the compositional architectures of mammalian nuclear genomes. PLoS Comput Biol 2014;10:e1003925. [PMID: 25375262 PMCID: PMC4222635 DOI: 10.1371/journal.pcbi.1003925] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2014] [Accepted: 09/18/2014] [Indexed: 11/18/2022]  Open
159
Kelstrup HC, Hartfelder K, Nascimento FS, Riddiford LM. The role of juvenile hormone in dominance behavior, reproduction and cuticular pheromone signaling in the caste-flexible epiponine wasp, Synoeca surinama. Front Zool 2014;11:78. [PMID: 25371699 PMCID: PMC4219083 DOI: 10.1186/s12983-014-0078-5] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2014] [Accepted: 10/15/2014] [Indexed: 11/29/2022]  Open
160
Poelchau M, Childers C, Moore G, Tsavatapalli V, Evans J, Lee CY, Lin H, Lin JW, Hackett K. The i5k Workspace@NAL--enabling genomic data access, visualization and curation of arthropod genomes. Nucleic Acids Res 2014;43:D714-9. [PMID: 25332403 DOI: 10.1093/nar/gku983] [Citation(s) in RCA: 119] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
161
Li Q, Wang Z, Lian J, Schiøtt M, Jin L, Zhang P, Zhang Y, Nygaard S, Peng Z, Zhou Y, Deng Y, Zhang W, Boomsma JJ, Zhang G. Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior. Nat Commun 2014;5:4943. [PMID: 25266559 PMCID: PMC4200514 DOI: 10.1038/ncomms5943] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2013] [Accepted: 08/08/2014] [Indexed: 01/16/2023]  Open
162
Eusocial insects as emerging models for behavioural epigenetics. Nat Rev Genet 2014;15:677-88. [PMID: 25200663 DOI: 10.1038/nrg3787] [Citation(s) in RCA: 112] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
163
Helanterä H, Uller T. Neutral and adaptive explanations for an association between caste-biased gene expression and rate of sequence evolution. Front Genet 2014;5:297. [PMID: 25221570 PMCID: PMC4148897 DOI: 10.3389/fgene.2014.00297] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2014] [Accepted: 08/08/2014] [Indexed: 12/30/2022]  Open
164
Roux J, Privman E, Moretti S, Daub JT, Robinson-Rechavi M, Keller L. Patterns of positive selection in seven ant genomes. Mol Biol Evol 2014;31:1661-85. [PMID: 24782441 PMCID: PMC4069625 DOI: 10.1093/molbev/msu141] [Citation(s) in RCA: 112] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
165
Glastad KM, Hunt BG, Goodisman MA. Evolutionary insights into DNA methylation in insects. CURRENT OPINION IN INSECT SCIENCE 2014;1:25-30. [PMID: 32846726 DOI: 10.1016/j.cois.2014.04.001] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2014] [Revised: 04/18/2014] [Accepted: 04/24/2014] [Indexed: 06/11/2023]
166
Terrapon N, Li C, Robertson HM, Ji L, Meng X, Booth W, Chen Z, Childers CP, Glastad KM, Gokhale K, Gowin J, Gronenberg W, Hermansen RA, Hu H, Hunt BG, Huylmans AK, Khalil SMS, Mitchell RD, Munoz-Torres MC, Mustard JA, Pan H, Reese JT, Scharf ME, Sun F, Vogel H, Xiao J, Yang W, Yang Z, Yang Z, Zhou J, Zhu J, Brent CS, Elsik CG, Goodisman MAD, Liberles DA, Roe RM, Vargo EL, Vilcinskas A, Wang J, Bornberg-Bauer E, Korb J, Zhang G, Liebig J. Molecular traces of alternative social organization in a termite genome. Nat Commun 2014;5:3636. [PMID: 24845553 DOI: 10.1038/ncomms4636] [Citation(s) in RCA: 277] [Impact Index Per Article: 25.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2013] [Accepted: 03/13/2014] [Indexed: 01/28/2023]  Open
167
Sumner S. The importance of genomic novelty in social evolution. Mol Ecol 2014;23:26-8. [PMID: 24372753 DOI: 10.1111/mec.12580] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2013] [Revised: 09/11/2013] [Accepted: 10/29/2013] [Indexed: 02/02/2023]
168
Roth KM, Beekman M, Allsopp MH, Goudie F, Wossler TC, Oldroyd BP. Cheating workers with large activated ovaries avoid risky foraging. Behav Ecol 2014. [DOI: 10.1093/beheco/aru043] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
169
Romiguier J, Lourenco J, Gayral P, Faivre N, Weinert LA, Ravel S, Ballenghien M, Cahais V, Bernard A, Loire E, Keller L, Galtier N. Population genomics of eusocial insects: the costs of a vertebrate-like effective population size. J Evol Biol 2014;27:593-603. [DOI: 10.1111/jeb.12331] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2013] [Revised: 12/27/2013] [Accepted: 01/02/2014] [Indexed: 12/15/2022]
170
Population genomics of the honey bee reveals strong signatures of positive selection on worker traits. Proc Natl Acad Sci U S A 2014;111:2614-9. [PMID: 24488971 DOI: 10.1073/pnas.1315506111] [Citation(s) in RCA: 158] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]  Open
171
Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, Devreese B, Elhaik E, Evans JD, Foster LJ, Graur D, Guigo R, Hoff KJ, Holder ME, Hudson ME, Hunt GJ, Jiang H, Joshi V, Khetani RS, Kosarev P, Kovar CL, Ma J, Maleszka R, Moritz RFA, Munoz-Torres MC, Murphy TD, Muzny DM, Newsham IF, Reese JT, Robertson HM, Robinson GE, Rueppell O, Solovyev V, Stanke M, Stolle E, Tsuruda JM, Vaerenbergh MV, Waterhouse RM, Weaver DB, Whitfield CW, Wu Y, Zdobnov EM, Zhang L, Zhu D, Gibbs RA. Finding the missing honey bee genes: lessons learned from a genome upgrade. BMC Genomics 2014;15:86. [PMID: 24479613 PMCID: PMC4028053 DOI: 10.1186/1471-2164-15-86] [Citation(s) in RCA: 292] [Impact Index Per Article: 26.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2013] [Accepted: 01/27/2014] [Indexed: 11/21/2022]  Open
172
Bonasio R. The role of chromatin and epigenetics in the polyphenisms of ant castes. Brief Funct Genomics 2014;13:235-45. [PMID: 24462993 DOI: 10.1093/bfgp/elt056] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]  Open
173
Sackton TB, Werren JH, Clark AG. Characterizing the infection-induced transcriptome of Nasonia vitripennis reveals a preponderance of taxonomically-restricted immune genes. PLoS One 2013;8:e83984. [PMID: 24386321 PMCID: PMC3873987 DOI: 10.1371/journal.pone.0083984] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2013] [Accepted: 11/10/2013] [Indexed: 12/19/2022]  Open
174
Johansson H, Dhaygude K, Lindström S, Helanterä H, Sundström L, Trontti K. A metatranscriptomic approach to the identification of microbiota associated with the ant Formica exsecta. PLoS One 2013;8:e79777. [PMID: 24260298 PMCID: PMC3832538 DOI: 10.1371/journal.pone.0079777] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2013] [Accepted: 09/25/2013] [Indexed: 11/19/2022]  Open
175
Wang X, Wheeler D, Avery A, Rago A, Choi JH, Colbourne JK, Clark AG, Werren JH. Function and evolution of DNA methylation in Nasonia vitripennis. PLoS Genet 2013;9:e1003872. [PMID: 24130511 PMCID: PMC3794928 DOI: 10.1371/journal.pgen.1003872] [Citation(s) in RCA: 124] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2013] [Accepted: 08/27/2013] [Indexed: 12/22/2022]  Open
176
Dunwell TL, McGuffin LJ, Dunwell JM, Pfeifer GP. The mysterious presence of a 5-methylcytosine oxidase in the Drosophila genome: possible explanations. Cell Cycle 2013;12:3357-65. [PMID: 24091536 DOI: 10.4161/cc.26540] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]  Open
177
Libbrecht R, Oxley PR, Kronauer DJC, Keller L. Ant genomics sheds light on the molecular regulation of social organization. Genome Biol 2013;14:212. [PMID: 23895728 PMCID: PMC4053786 DOI: 10.1186/gb-2013-14-7-212] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
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