• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5080897)   Today's Articles (1074)
For: Nakano S, Chadalavada DM, Bevilacqua PC. General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme. Science 2000;287:1493-7. [PMID: 10688799 DOI: 10.1126/science.287.5457.1493] [Citation(s) in RCA: 301] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Number Cited by Other Article(s)
151
Blose JM, Proctor DJ, Veeraraghavan N, Misra VK, Bevilacqua PC. Contribution of the closing base pair to exceptional stability in RNA tetraloops: roles for molecular mimicry and electrostatic factors. J Am Chem Soc 2009;131:8474-84. [PMID: 19476351 DOI: 10.1021/ja900065e] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
152
Frederiksen JK, Piccirilli JA. Identification of catalytic metal ion ligands in ribozymes. Methods 2009;49:148-66. [PMID: 19651216 DOI: 10.1016/j.ymeth.2009.07.005] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2009] [Revised: 07/20/2009] [Accepted: 07/29/2009] [Indexed: 01/05/2023]  Open
153
Fedor MJ. Comparative enzymology and structural biology of RNA self-cleavage. Annu Rev Biophys 2009;38:271-99. [PMID: 19416070 DOI: 10.1146/annurev.biophys.050708.133710] [Citation(s) in RCA: 107] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
154
Liu L, Cottrell JW, Scott LG, Fedor MJ. Direct measurement of the ionization state of an essential guanine in the hairpin ribozyme. Nat Chem Biol 2009;5:351-7. [PMID: 19330013 PMCID: PMC2670934 DOI: 10.1038/nchembio.156] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2008] [Accepted: 02/18/2009] [Indexed: 11/08/2022]
155
Rizzetto M. Hepatitis D: thirty years after. J Hepatol 2009;50:1043-50. [PMID: 19285743 DOI: 10.1016/j.jhep.2009.01.004] [Citation(s) in RCA: 140] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
156
Hollenstein M, Hipolito CJ, Lam CH, Perrin DM. A self-cleaving DNA enzyme modified with amines, guanidines and imidazoles operates independently of divalent metal cations (M2+). Nucleic Acids Res 2009;37:1638-49. [PMID: 19153138 PMCID: PMC2655665 DOI: 10.1093/nar/gkn1070] [Citation(s) in RCA: 103] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2008] [Revised: 12/18/2008] [Accepted: 12/19/2008] [Indexed: 12/04/2022]  Open
157
Araki L, Morita K, Yamaguchi M, Zhao ZY, Wilson TJ, Lilley DMJ, Harusawa S. Synthesis of novel C4-linked C2-imidazole ribonucleoside phosphoramidite and its application to probing the catalytic mechanism of a ribozyme. J Org Chem 2009;74:2350-6. [PMID: 19220046 DOI: 10.1021/jo802556s] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
158
The structure and function of catalytic RNAs. ACTA ACUST UNITED AC 2009;52:232-44. [DOI: 10.1007/s11427-009-0038-z] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2008] [Accepted: 12/25/2008] [Indexed: 11/26/2022]
159
Wilson TJ, Lilley DMJ. Biochemistry. The evolution of ribozyme chemistry. Science 2009;323:1436-8. [PMID: 19286542 DOI: 10.1126/science.1169231] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/31/2025]
160
Chen JH, Gong B, Bevilacqua PC, Carey PR, Golden BL. A catalytic metal ion interacts with the cleavage Site G.U wobble in the HDV ribozyme. Biochemistry 2009;48:1498-507. [PMID: 19178151 PMCID: PMC2645270 DOI: 10.1021/bi8020108] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
161
Walter NG, Perumal S. The Small Ribozymes: Common and Diverse Features Observed through the FRET Lens. SPRINGER SERIES IN BIOPHYSICS 2009;13:103-127. [PMID: 21796234 DOI: 10.1007/978-3-540-70840-7_5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
162
Thomas JM, Perrin DM. Probing General Base Catalysis in the Hammerhead Ribozyme. J Am Chem Soc 2008;130:15467-75. [DOI: 10.1021/ja804496z] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
163
Suydam IT, Strobel SA. Fluorine substituted adenosines as probes of nucleobase protonation in functional RNAs. J Am Chem Soc 2008;130:13639-48. [PMID: 18803382 PMCID: PMC2633102 DOI: 10.1021/ja803336y] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
164
Mucha A, Knobloch B, Jezowska-Bojczuk M, Kozłowski H, Sigel RKO. Comparison of the acid-base properties of ribose and 2'-deoxyribose nucleotides. Chemistry 2008;14:6663-71. [PMID: 18567033 DOI: 10.1002/chem.200800496] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
165
Cerrone-Szakal AL, Siegfried NA, Bevilacqua PC. Mechanistic characterization of the HDV genomic ribozyme: solvent isotope effects and proton inventories in the absence of divalent metal ions support C75 as the general acid. J Am Chem Soc 2008;130:14504-20. [PMID: 18842044 DOI: 10.1021/ja801816k] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
166
Fedoruk-Wyszomirska A, Giel-Pietraszuk M, Wyszko E, Szymański M, Ciesiołka J, Barciszewska MZ, Barciszewski J. The mechanism of acidic hydrolysis of esters explains the HDV ribozyme activity. Mol Biol Rep 2008;36:1647-50. [PMID: 18810653 DOI: 10.1007/s11033-008-9364-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2008] [Accepted: 09/11/2008] [Indexed: 10/21/2022]
167
Banáš P, Rulíšek L, Hánošová V, Svozil D, Walter NG, Šponer J, Otyepka M. General base catalysis for cleavage by the active-site cytosine of the hepatitis delta virus ribozyme: QM/MM calculations establish chemical feasibility. J Phys Chem B 2008;112:11177-87. [PMID: 18686993 PMCID: PMC2566740 DOI: 10.1021/jp802592z] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
168
Cerrone-Szakal AL, Chadalavada DM, Golden BL, Bevilacqua PC. Mechanistic characterization of the HDV genomic ribozyme: the cleavage site base pair plays a structural role in facilitating catalysis. RNA (NEW YORK, N.Y.) 2008;14:1746-60. [PMID: 18658121 PMCID: PMC2525964 DOI: 10.1261/rna.1140308] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
169
Smith MD, Mehdizadeh R, Olive JE, Collins RA. The ionic environment determines ribozyme cleavage rate by modulation of nucleobase pK a. RNA (NEW YORK, N.Y.) 2008;14:1942-9. [PMID: 18697921 PMCID: PMC2525962 DOI: 10.1261/rna.1102308] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2008] [Accepted: 06/02/2008] [Indexed: 05/20/2023]
170
MacElrevey C, Salter JD, Krucinska J, Wedekind JE. Structural effects of nucleobase variations at key active site residue Ade38 in the hairpin ribozyme. RNA (NEW YORK, N.Y.) 2008;14:1600-16. [PMID: 18596253 PMCID: PMC2491461 DOI: 10.1261/rna.1055308] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 03/02/2008] [Accepted: 05/01/2008] [Indexed: 05/04/2023]
171
Lippert B. Ligand-pKaShifts through Metals: Potential Relevance to Ribozyme Chemistry. Chem Biodivers 2008;5:1455-1474. [DOI: 10.1002/cbdv.200890135] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
172
Cochrane JC, Strobel SA. Catalytic strategies of self-cleaving ribozymes. Acc Chem Res 2008;41:1027-35. [PMID: 18652494 DOI: 10.1021/ar800050c] [Citation(s) in RCA: 125] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
173
Galabov B, Ilieva S, Hadjieva B, Atanasov Y, Schaefer HF. Predicting Reactivities of Organic Molecules. Theoretical and Experimental Studies on the Aminolysis of Phenyl Acetates. J Phys Chem A 2008;112:6700-7. [DOI: 10.1021/jp8007514] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
174
Jaikaran D, Smith MD, Mehdizadeh R, Olive J, Collins RA. An important role of G638 in the cis-cleavage reaction of the Neurospora VS ribozyme revealed by a novel nucleotide analog incorporation method. RNA (NEW YORK, N.Y.) 2008;14:938-49. [PMID: 18356538 PMCID: PMC2327350 DOI: 10.1261/rna.936508] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
175
Vicens Q, Allen MA, Gilbert SD, Reznik B, Gooding AR, Batey RT. The Cech Symposium: a celebration of 25 years of ribozymes, 10 years of TERT, and 60 years of Tom. RNA (NEW YORK, N.Y.) 2008;14:397-403. [PMID: 18203922 PMCID: PMC2248266 DOI: 10.1261/rna.910008] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
176
Walter NG. Ribozyme catalysis revisited: is water involved? Mol Cell 2007;28:923-9. [PMID: 18158891 PMCID: PMC2575846 DOI: 10.1016/j.molcel.2007.12.001] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
177
Chadalavada DM, Cerrone-Szakal AL, Bevilacqua PC. Wild-type is the optimal sequence of the HDV ribozyme under cotranscriptional conditions. RNA (NEW YORK, N.Y.) 2007;13:2189-2201. [PMID: 17956974 PMCID: PMC2080589 DOI: 10.1261/rna.778107] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2007] [Accepted: 09/11/2007] [Indexed: 05/25/2023]
178
Strobel SA, Cochrane JC. RNA catalysis: ribozymes, ribosomes, and riboswitches. Curr Opin Chem Biol 2007;11:636-43. [PMID: 17981494 PMCID: PMC2184879 DOI: 10.1016/j.cbpa.2007.09.010] [Citation(s) in RCA: 80] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2007] [Accepted: 09/26/2007] [Indexed: 10/22/2022]
179
Gong B, Chen JH, Chase E, Chadalavada DM, Yajima R, Golden BL, Bevilacqua PC, Carey PR. Direct measurement of a pK(a) near neutrality for the catalytic cytosine in the genomic HDV ribozyme using Raman crystallography. J Am Chem Soc 2007;129:13335-42. [PMID: 17924627 DOI: 10.1021/ja0743893] [Citation(s) in RCA: 84] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
180
Anderson VE, Ruszczycky MW, Harris ME. Activation of oxygen nucleophiles in enzyme catalysis. Chem Rev 2007;106:3236-51. [PMID: 16895326 DOI: 10.1021/cr050281z] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
181
Sefcikova J, Krasovska MV, Spacková N, Sponer J, Walter NG. Impact of an extruded nucleotide on cleavage activity and dynamic catalytic core conformation of the hepatitis delta virus ribozyme. Biopolymers 2007;85:392-406. [PMID: 17253610 DOI: 10.1002/bip.20693] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
182
Lilley DMJ. A chemo-genetic approach for the study of nucleobase participation in nucleolytic ribozymes. Biol Chem 2007;388:699-704. [PMID: 17570822 DOI: 10.1515/bc.2007.069] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
183
Ye JD, Barth CD, Anjaneyulu PSR, Tuschl T, Piccirilli JA. Reactions of phosphate and phosphorothiolate diesters with nucleophiles: comparison of transition state structures. Org Biomol Chem 2007;5:2491-7. [PMID: 17637971 DOI: 10.1039/b707205h] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
184
Roychowdhury-Saha M, Burke DH. Distinct reaction pathway promoted by non-divalent-metal cations in a tertiary stabilized hammerhead ribozyme. RNA (NEW YORK, N.Y.) 2007;13:841-8. [PMID: 17456566 PMCID: PMC1869042 DOI: 10.1261/rna.339207] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
185
Wilson TJ, McLeod AC, Lilley DMJ. A guanine nucleobase important for catalysis by the VS ribozyme. EMBO J 2007;26:2489-500. [PMID: 17464286 PMCID: PMC1868910 DOI: 10.1038/sj.emboj.7601698] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2006] [Accepted: 04/02/2007] [Indexed: 11/08/2022]  Open
186
Taylor MS, Jacobsen EN. Asymmetric catalysis by chiral hydrogen-bond donors. Angew Chem Int Ed Engl 2007;45:1520-43. [PMID: 16491487 DOI: 10.1002/anie.200503132] [Citation(s) in RCA: 1570] [Impact Index Per Article: 87.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
187
Smith MD, Collins RA. Evidence for proton transfer in the rate-limiting step of a fast-cleaving Varkud satellite ribozyme. Proc Natl Acad Sci U S A 2007;104:5818-23. [PMID: 17389378 PMCID: PMC1851575 DOI: 10.1073/pnas.0608864104] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2006] [Indexed: 11/18/2022]  Open
188
Sefcikova J, Krasovska MV, Šponer J, Walter NG. The genomic HDV ribozyme utilizes a previously unnoticed U-turn motif to accomplish fast site-specific catalysis. Nucleic Acids Res 2007;35:1933-46. [PMID: 17337436 PMCID: PMC1874588 DOI: 10.1093/nar/gkl1104] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
189
Ke A, Ding F, Batchelor JD, Doudna JA. Structural Roles of Monovalent Cations in the HDV Ribozyme. Structure 2007;15:281-7. [PMID: 17355864 DOI: 10.1016/j.str.2007.01.017] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2006] [Revised: 12/22/2006] [Accepted: 01/09/2007] [Indexed: 11/22/2022]
190
McDowell SE, Špačková N, Šponer J, Walter NG. Molecular dynamics simulations of RNA: an in silico single molecule approach. Biopolymers 2007;85:169-84. [PMID: 17080418 PMCID: PMC2018183 DOI: 10.1002/bip.20620] [Citation(s) in RCA: 114] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
191
Wei K, Liu L, Cheng YH, Fu Y, Guo QX. Theoretical Examination of Two Opposite Mechanisms Proposed for Hepatitis Delta Virus Ribozyme. J Phys Chem B 2007;111:1514-6. [PMID: 17263576 DOI: 10.1021/jp070120u] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
192
Przybilski R, Hammann C. The hammerhead ribozyme structure brought in line. Chembiochem 2007;7:1641-4. [PMID: 16991176 DOI: 10.1002/cbic.200600312] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
193
Tinsley RA, Walter NG. Long-range impact of peripheral joining elements on structure and function of the hepatitis delta virus ribozyme. Biol Chem 2007;388:705-15. [PMID: 17570823 DOI: 10.1515/bc.2007.088] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
194
Wilson TJ, Nahas M, Araki L, Harusawa S, Ha T, Lilley DMJ. RNA folding and the origins of catalytic activity in the hairpin ribozyme. Blood Cells Mol Dis 2007;38:8-14. [PMID: 17150385 DOI: 10.1016/j.bcmd.2006.10.004] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2006] [Accepted: 10/10/2006] [Indexed: 11/26/2022]
195
Leung EKY, Sen D. Electron Hole Flow Patterns through the RNA-Cleaving 8-17 Deoxyribozyme Yield Unusual Information about Its Structure and Folding. ACTA ACUST UNITED AC 2007;14:41-51. [PMID: 17254951 DOI: 10.1016/j.chembiol.2006.11.006] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2006] [Revised: 10/31/2006] [Accepted: 11/06/2006] [Indexed: 11/21/2022]
196
Liu H, Robinet JJ, Ananvoranich S, Gauld JW. Density Functional Theory Investigation on the Mechanism of the Hepatitis Delta Virus Ribozyme. J Phys Chem B 2006;111:439-45. [PMID: 17214496 DOI: 10.1021/jp064292n] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
197
Tang CL, Alexov E, Pyle AM, Honig B. Calculation of pKas in RNA: on the structural origins and functional roles of protonated nucleotides. J Mol Biol 2006;366:1475-96. [PMID: 17223134 DOI: 10.1016/j.jmb.2006.12.001] [Citation(s) in RCA: 122] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2006] [Revised: 11/29/2006] [Accepted: 12/01/2006] [Indexed: 12/01/2022]
198
Klein DJ, Ferré-D'Amaré AR. Structural basis of glmS ribozyme activation by glucosamine-6-phosphate. Science 2006;313:1752-6. [PMID: 16990543 DOI: 10.1126/science.1129666] [Citation(s) in RCA: 301] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
199
Salehi-Ashtiani K, Lupták A, Litovchick A, Szostak JW. A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene. Science 2006;313:1788-92. [PMID: 16990549 DOI: 10.1126/science.1129308] [Citation(s) in RCA: 220] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
200
Been MD. MOLECULAR BIOLOGY: Versatility of Self-Cleaving Ribozymes. Science 2006;313:1745-7. [PMID: 16990539 DOI: 10.1126/science.1133259] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
PrevPage 4 of 7 1234567Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA