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For: Katoh K, Standley DM. A simple method to control over-alignment in the MAFFT multiple sequence alignment program. Bioinformatics 2016;32:1933-42. [PMID: 27153688 PMCID: PMC4920119 DOI: 10.1093/bioinformatics/btw108] [Citation(s) in RCA: 360] [Impact Index Per Article: 40.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2015] [Accepted: 02/19/2016] [Indexed: 12/17/2022]  Open
Number Cited by Other Article(s)
201
Dearlove B, Tovanabutra S, Owen CL, Lewitus E, Li Y, Sanders-Buell E, Bose M, O’Sullivan AM, Kijak G, Miller S, Poltavee K, Lee J, Bonar L, Harbolick E, Ahani B, Pham P, Kibuuka H, Maganga L, Nitayaphan S, Sawe FK, Kim JH, Eller LA, Vasan S, Gramzinski R, Michael NL, Robb ML, Rolland M, the RV217 Study Team. Factors influencing estimates of HIV-1 infection timing using BEAST. PLoS Comput Biol 2021;17:e1008537. [PMID: 33524022 PMCID: PMC7877758 DOI: 10.1371/journal.pcbi.1008537] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2019] [Revised: 02/11/2021] [Accepted: 11/13/2020] [Indexed: 12/15/2022]  Open
202
Michael TP, Ernst E, Hartwick N, Chu P, Bryant D, Gilbert S, Ortleb S, Baggs EL, Sree KS, Appenroth KJ, Fuchs J, Jupe F, Sandoval JP, Krasileva KV, Borisjuk L, Mockler TC, Ecker JR, Martienssen RA, Lam E. Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control. Genome Res 2021;31:225-238. [PMID: 33361111 PMCID: PMC7849404 DOI: 10.1101/gr.266429.120] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Accepted: 12/16/2020] [Indexed: 11/24/2022]
203
Majure LC, Barrios D, Díaz E, Zumwalde BA, Testo W, Negrón-Ortíz V. Pleistocene aridification underlies the evolutionary history of the Caribbean endemic, insular, giant Consolea (Opuntioideae). AMERICAN JOURNAL OF BOTANY 2021;108:200-215. [PMID: 33598914 DOI: 10.1002/ajb2.1610] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Accepted: 01/12/2021] [Indexed: 06/12/2023]
204
Neretina AN, Karabanov DP, Sacherova V, Kotov AA. Unexpected mitochondrial lineage diversity within the genus Alonella Sars, 1862 (Crustacea: Cladocera) across the Northern Hemisphere. PeerJ 2021;9:e10804. [PMID: 33585083 PMCID: PMC7860113 DOI: 10.7717/peerj.10804] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Accepted: 12/30/2020] [Indexed: 02/05/2023]  Open
205
Meng CR, Zhang Q, Yang ZF, Geng K, Zeng XY, Thilini Chethana KW, Wang Y. Lasiodiplodia syzygii sp. nov. (Botryosphaeriaceae) causing post-harvest water-soaked brown lesions on Syzygium samarangense in Chiang Rai, Thailand. Biodivers Data J 2021;9:e60604. [PMID: 33510578 PMCID: PMC7809010 DOI: 10.3897/bdj.9.e60604] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Accepted: 12/23/2020] [Indexed: 11/12/2022]  Open
206
An YY, Zeng XY, Geng K, Hyde KD, Wang Y. One new species and one new record of Zasmidium in China. Biodivers Data J 2021;9:e59001. [PMID: 33510577 PMCID: PMC7809012 DOI: 10.3897/bdj.9.e59001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2020] [Accepted: 12/08/2020] [Indexed: 01/22/2023]  Open
207
Majure LC, Encarnación Y, Clase T, Peguero B, Ho K, Barrios D. Phylogenetics of Leptocereus (Cactaceae) on Hispaniola: clarifying species limits in the L. weingartianus complex and a new species from the Sierra de Bahoruco. PHYTOKEYS 2021;172:17-37. [PMID: 33597828 PMCID: PMC7864899 DOI: 10.3897/phytokeys.172.59497] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Accepted: 12/15/2020] [Indexed: 05/08/2023]
208
González-Domínguez J. Fast and Accurate Multiple Sequence Alignment with MSAProbs-MPI. Methods Mol Biol 2021;2231:39-47. [PMID: 33289885 DOI: 10.1007/978-1-0716-1036-7_3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
209
Tagliamonte MS, Abid N, Borocci S, Sangiovanni E, Ostrov DA, Kosakovsky Pond SL, Salemi M, Chillemi G, Mavian C. Multiple Recombination Events and Strong Purifying Selection at the Origin of SARS-CoV-2 Spike Glycoprotein Increased Correlated Dynamic Movements. Int J Mol Sci 2020;22:E80. [PMID: 33374797 PMCID: PMC7794730 DOI: 10.3390/ijms22010080] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2020] [Revised: 12/17/2020] [Accepted: 12/18/2020] [Indexed: 01/12/2023]  Open
210
Zekri ARN, Easa Amer K, Hafez MM, Hassan ZK, Ahmed OS, Soliman HK, Bahnasy AA, Abdel Hamid W, Gad A, Ali M, Ali Hassan W, Samir Madboly M, Abdel Raouf A, Khattab AA, Salah El Din Hamdy M, Sherif Soliman M, Hamdi El Sissy M, Mohamed El Khateeb S, Hosny Ezzelarab M, Fathalla LA, Abouelhoda M. Genomic characterization of SARS-CoV-2 in Egypt. J Adv Res 2020;30:123-132. [PMID: 33262895 PMCID: PMC7688418 DOI: 10.1016/j.jare.2020.11.012] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Revised: 11/20/2020] [Accepted: 11/24/2020] [Indexed: 02/07/2023]  Open
211
Muliyar RK, Chowdappa P, Behera SK, Kasaragod S, Gangaraj KP, Kotimoole CN, Nekrakalaya B, Mohanty V, Sampgod RB, Banerjee G, Das AJ, Niral V, Karun A, Mahato AK, Gaikwad K, Singh NK, Prasad TSK. Assembly and Annotation of the Nuclear and Organellar Genomes of a Dwarf Coconut (Chowghat Green Dwarf) Possessing Enhanced Disease Resistance. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 2020;24:726-742. [PMID: 33170083 DOI: 10.1089/omi.2020.0147] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
212
Proposal for a subdivision of the family Psathyrellaceae based on a taxon-rich phylogenetic analysis with iterative multigene guide tree. Mycol Prog 2020. [DOI: 10.1007/s11557-020-01606-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
213
Botnen SS, Thoen E, Eidesen PB, Krabberød AK, Kauserud H. Community composition of arctic root-associated fungi mirrors host plant phylogeny. FEMS Microbiol Ecol 2020;96:fiaa185. [PMID: 32918451 PMCID: PMC7840110 DOI: 10.1093/femsec/fiaa185] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 09/08/2020] [Indexed: 12/15/2022]  Open
214
Hugouvieux-Cotte-Pattat N, Brochier-Armanet C, Flandrois JP, Reverchon S. Dickeya poaceiphila sp. nov., a plant-pathogenic bacterium isolated from sugar cane (Saccharum officinarum). Int J Syst Evol Microbiol 2020;70:4508-4514. [PMID: 32628105 DOI: 10.1099/ijsem.0.004306] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
215
Identification and Distribution of Novel Cressdnaviruses and Circular molecules in Four Penguin Species in South Georgia and the Antarctic Peninsula. Viruses 2020;12:v12091029. [PMID: 32947826 PMCID: PMC7551938 DOI: 10.3390/v12091029] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Revised: 09/11/2020] [Accepted: 09/14/2020] [Indexed: 12/26/2022]  Open
216
De Carli S, Wolf JM, Gräf T, Lehmann FKM, Fonseca ASK, Canal CW, Lunge VR, Ikuta N. Genotypic characterization and molecular evolution of avian reovirus in poultry flocks from Brazil. Avian Pathol 2020;49:611-620. [PMID: 32746617 DOI: 10.1080/03079457.2020.1804528] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
217
Watson ZL, Ward FR, Méheust R, Ad O, Schepartz A, Banfield JF, Cate JH. Structure of the bacterial ribosome at 2 Å resolution. eLife 2020;9:60482. [PMID: 32924932 DOI: 10.1101/2020.06.26.174334] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2020] [Accepted: 09/11/2020] [Indexed: 05/24/2023]  Open
218
Watson ZL, Ward FR, Méheust R, Ad O, Schepartz A, Banfield JF, Cate JHD. Structure of the bacterial ribosome at 2 Å resolution. eLife 2020;9:e60482. [PMID: 32924932 PMCID: PMC7550191 DOI: 10.7554/elife.60482] [Citation(s) in RCA: 175] [Impact Index Per Article: 35.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2020] [Accepted: 09/11/2020] [Indexed: 12/31/2022]  Open
219
Elliott TF, Nelsen DJ, Karunarathna SC, Stephenson SL. Entoloma sequestratum, a new species from northern Thailand, and a worldwide key to sequestrate taxa of Entoloma (Entolomataceae). Fungal Syst Evol 2020;6:253-263. [PMID: 32904160 PMCID: PMC7451772 DOI: 10.3114/fuse.2020.06.12] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]  Open
220
Andrews RJ, O’Leary CA, Moss WN. A survey of RNA secondary structural propensity encoded within human herpesvirus genomes: global comparisons and local motifs. PeerJ 2020;8:e9882. [PMID: 32974099 PMCID: PMC7487152 DOI: 10.7717/peerj.9882] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Accepted: 08/16/2020] [Indexed: 12/13/2022]  Open
221
Smith SA, Walker-Hale N, Walker JF. Intragenic Conflict in Phylogenomic Data Sets. Mol Biol Evol 2020;37:3380-3388. [DOI: 10.1093/molbev/msaa170] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
222
Fu YT, Dong Y, Wang W, Nie Y, Liu GH, Shao R. Fragmented mitochondrial genomes evolved in opposite directions between closely related macaque louse Pedicinus obtusus and colobus louse Pedicinus badii. Genomics 2020;112:4924-4933. [PMID: 32898640 DOI: 10.1016/j.ygeno.2020.09.005] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Revised: 08/08/2020] [Accepted: 09/03/2020] [Indexed: 02/06/2023]
223
Viral diversity in oral cavity from Sapajus nigritus by metagenomic analyses. Braz J Microbiol 2020;51:1941-1951. [PMID: 32780265 DOI: 10.1007/s42770-020-00350-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Accepted: 07/25/2020] [Indexed: 01/14/2023]  Open
224
Sharaf MR, Gotzek D, Guénard B, Fisher BL, Aldawood AS, Al Dhafer HM, Mohamed AA. Molecular phylogenetic analysis and morphological reassessments of thief ants identify a new potential case of biological invasions. Sci Rep 2020;10:12040. [PMID: 32694527 PMCID: PMC7374620 DOI: 10.1038/s41598-020-69029-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Accepted: 07/01/2020] [Indexed: 11/13/2022]  Open
225
Méheust R, Castelle CJ, Matheus Carnevali PB, Farag IF, He C, Chen LX, Amano Y, Hug LA, Banfield JF. Groundwater Elusimicrobia are metabolically diverse compared to gut microbiome Elusimicrobia and some have a novel nitrogenase paralog. ISME JOURNAL 2020;14:2907-2922. [PMID: 32681159 DOI: 10.1038/s41396-020-0716-1] [Citation(s) in RCA: 61] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Revised: 06/15/2020] [Accepted: 07/08/2020] [Indexed: 01/09/2023]
226
Arya GC, Srivastava DA, Pandaranayaka EPJ, Manasherova E, Prusky DB, Elad Y, Frenkel O, Dvir H, Harel A. Characterization of the Role of a Non-GPCR Membrane-Bound CFEM Protein in the Pathogenicity and Germination of Botrytis cinerea. Microorganisms 2020;8:microorganisms8071043. [PMID: 32674341 PMCID: PMC7409268 DOI: 10.3390/microorganisms8071043] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 07/10/2020] [Accepted: 07/11/2020] [Indexed: 01/01/2023]  Open
227
Vidovszky MZ, Tan Z, Carr MJ, Boldogh S, Harrach B, Gonzalez G. Bat-borne polyomaviruses in Europe reveal an evolutionary history of intrahost divergence with horseshoe bats distributed across the African and Eurasian continents. J Gen Virol 2020;101:1119-1130. [PMID: 32644038 DOI: 10.1099/jgv.0.001467] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
228
Gao Y, Lv M, Cui T, Wan X. The complete chloroplast genome of Caryota obtusa, an endangered and economically important species. Mitochondrial DNA B Resour 2020;5:2176-2177. [PMID: 33366959 PMCID: PMC7510677 DOI: 10.1080/23802359.2020.1768944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 05/09/2020] [Indexed: 11/23/2022]  Open
229
Li J, Xu B, Yang Q, Liu ZL. The complete chloroplast genome sequence of Picea schrenkiana (Pinaceae). Mitochondrial DNA B Resour 2020;5:2191-2192. [PMID: 33366966 PMCID: PMC7510663 DOI: 10.1080/23802359.2020.1768960] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Accepted: 05/09/2020] [Indexed: 11/30/2022]  Open
230
Genetic Characterization of Influenza A Viruses in Japanese Swine in 2015 to 2019. J Virol 2020;94:JVI.02169-19. [PMID: 32350072 PMCID: PMC7343197 DOI: 10.1128/jvi.02169-19] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2019] [Accepted: 04/10/2020] [Indexed: 11/20/2022]  Open
231
Yaravirus: A novel 80-nm virus infecting Acanthamoeba castellanii. Proc Natl Acad Sci U S A 2020;117:16579-16586. [PMID: 32601223 DOI: 10.1073/pnas.2001637117] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
232
He Z, Long P, Fang F, Li S, Zhang P, Chen Z. Diversity of MSDIN family members in amanitin-producing mushrooms and the phylogeny of the MSDIN and prolyl oligopeptidase genes. BMC Genomics 2020;21:440. [PMID: 32590929 PMCID: PMC7318481 DOI: 10.1186/s12864-020-06857-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Accepted: 06/22/2020] [Indexed: 11/14/2022]  Open
233
Pyrih J, Rašková V, Škodová-Sveráková I, Pánek T, Lukeš J. ZapE/Afg1 interacts with Oxa1 and its depletion causes a multifaceted phenotype. PLoS One 2020;15:e0234918. [PMID: 32579605 PMCID: PMC7314023 DOI: 10.1371/journal.pone.0234918] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2020] [Accepted: 06/04/2020] [Indexed: 11/19/2022]  Open
234
ADEBALİ O, BİRCAN A, ÇİRCİ D, İŞLEK B, KILINÇ Z, SELÇUK B, TURHAN B. Phylogenetic analysis of SARS-CoV-2 genomes in Turkey. Turk J Biol 2020;44:146-156. [PMID: 32595351 PMCID: PMC7314511 DOI: 10.3906/biy-2005-35] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]  Open
235
Kotov AA, Garibian PG, Bekker EI, Taylor DJ, Karabanov DP. A new species group from the Daphnia curvirostris species complex (Cladocera: Anomopoda) from the eastern Palaearctic: taxonomy, phylogeny and phylogeography. Zool J Linn Soc 2020. [DOI: 10.1093/zoolinnean/zlaa046] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
236
Tufféry P, de Vries S. The search of sequence variants using a constrained protein evolution simulation approach. Comput Struct Biotechnol J 2020;18:1790-1799. [PMID: 32695271 PMCID: PMC7355721 DOI: 10.1016/j.csbj.2020.06.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2020] [Revised: 05/15/2020] [Accepted: 06/09/2020] [Indexed: 10/25/2022]  Open
237
Sharrar AM, Crits-Christoph A, Méheust R, Diamond S, Starr EP, Banfield JF. Bacterial Secondary Metabolite Biosynthetic Potential in Soil Varies with Phylum, Depth, and Vegetation Type. mBio 2020;11:e00416-20. [PMID: 32546614 PMCID: PMC7298704 DOI: 10.1128/mbio.00416-20] [Citation(s) in RCA: 105] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Accepted: 05/08/2020] [Indexed: 01/12/2023]  Open
238
Kieper SN, Almendros C, Brouns SJJ. Conserved motifs in the CRISPR leader sequence control spacer acquisition levels in Type I-D CRISPR-Cas systems. FEMS Microbiol Lett 2020;366:5525085. [PMID: 31252430 PMCID: PMC6607411 DOI: 10.1093/femsle/fnz129] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Accepted: 06/27/2019] [Indexed: 12/20/2022]  Open
239
Ren L, Zhang X, Li Y, Shang Y, Chen S, Wang S, Qu Y, Cai J, Guo Y. Comparative analysis of mitochondrial genomes among the subfamily Sarcophaginae (Diptera: Sarcophagidae) and phylogenetic implications. Int J Biol Macromol 2020;161:214-222. [PMID: 32526299 DOI: 10.1016/j.ijbiomac.2020.06.043] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Revised: 05/25/2020] [Accepted: 06/05/2020] [Indexed: 12/16/2022]
240
Mavian C, Marini S, Prosperi M, Salemi M. A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis. JMIR Public Health Surveill 2020;6:e19170. [PMID: 32412415 PMCID: PMC7265655 DOI: 10.2196/19170] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Revised: 05/09/2020] [Accepted: 05/12/2020] [Indexed: 01/07/2023]  Open
241
Herisse M, Ishida K, Porter JL, Howden B, Hertweck C, Stinear TP, Pidot SJ. Identification and Mobilization of a Cryptic Antibiotic Biosynthesis Gene Locus from a Human-Pathogenic Nocardia Isolate. ACS Chem Biol 2020;15:1161-1168. [PMID: 31697466 DOI: 10.1021/acschembio.9b00763] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
242
Boyles SM, Mavian CN, Finol E, Ukhanova M, Stephenson CJ, Hamerlinck G, Kang S, Baumgartner C, Geesey M, Stinton I, Williams K, Mathias DK, Prosperi M, Mai V, Salemi M, Buckner EA, Lednicky JA, Rivers AR, Dinglasan RR. Under-the-Radar Dengue Virus Infections in Natural Populations of Aedes aegypti Mosquitoes. mSphere 2020;5:e00316-20. [PMID: 32350095 PMCID: PMC7193045 DOI: 10.1128/msphere.00316-20] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Accepted: 04/12/2020] [Indexed: 12/30/2022]  Open
243
Hofmann-Sieber H, Gonzalez G, Spohn M, Dobner T, Kajon AE. Genomic and phylogenetic analysis of two guinea pig adenovirus strains recovered from archival lung tissue. Virus Res 2020;285:197965. [PMID: 32311385 DOI: 10.1016/j.virusres.2020.197965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Revised: 04/06/2020] [Accepted: 04/07/2020] [Indexed: 11/13/2022]
244
Sabrialabed S, Yang JG, Yariv E, Ben-Tal N, Lewinson O. Substrate recognition and ATPase activity of the E. coli cysteine/cystine ABC transporter YecSC-FliY. J Biol Chem 2020;295:5245-5256. [PMID: 32144203 PMCID: PMC7170509 DOI: 10.1074/jbc.ra119.012063] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2019] [Revised: 03/03/2020] [Indexed: 12/20/2022]  Open
245
Hehenberger E, Eitel M, Fortunato SAV, Miller DJ, Keeling PJ, Cahill MA. Early eukaryotic origins and metazoan elaboration of MAPR family proteins. Mol Phylogenet Evol 2020;148:106814. [PMID: 32278076 DOI: 10.1016/j.ympev.2020.106814] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Revised: 03/24/2020] [Accepted: 04/01/2020] [Indexed: 01/01/2023]
246
Martínez-Aquino A, García-Teh JG, Ceccarelli FS, Aguilar-Aguilar R, Vidal-Martinez VM, Leopoldina Aguirre-Macedo M. New morphological and molecular data for Xystretrum solidum (Gorgoderidae, Gorgoderinae) from Sphoeroides testudineus (Tetraodontiformes, Tetraodontidae) in Mexican waters. Zookeys 2020;925:141-161. [PMID: 32317854 PMCID: PMC7160187 DOI: 10.3897/zookeys.925.49503] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Accepted: 02/21/2020] [Indexed: 11/12/2022]  Open
247
Dong W, Hyde KD, Doilom M, Yu XD, Bhat DJ, Jeewon R, Boonmee S, Wang GN, Nalumpang S, Zhang H. Pseudobactrodesmium (Dactylosporaceae, Eurotiomycetes, Fungi) a Novel Lignicolous Genus. Front Microbiol 2020;11:456. [PMID: 32300334 PMCID: PMC7144566 DOI: 10.3389/fmicb.2020.00456] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Accepted: 03/03/2020] [Indexed: 11/13/2022]  Open
248
Nguyen DH, Lemieux C, Turmel M, Pham TB, Nguyen VD, Mouget JL, Tremblay R, Gastineau R. Complete mitogenome of the noble volute Cymbiola nobilis from the Vietnamese Island of Phú Quốc. Mitochondrial DNA B Resour 2020. [DOI: 10.1080/23802359.2020.1747369] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]  Open
249
Damodaran L, de Bernardi Schneider A, Chen S, Janies D. Evolution of endemic and sylvatic lineages of dengue virus. Cladistics 2020;36:115-128. [PMID: 34618965 DOI: 10.1111/cla.12402] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/02/2019] [Indexed: 11/30/2022]  Open
250
Yang X, Feng T, Li S, Zhao H, Zhao S, Ma C, Jenks MA, Lü S. CER16 Inhibits Post-Transcriptional Gene Silencing of CER3 to Regulate Alkane Biosynthesis. PLANT PHYSIOLOGY 2020;182:1211-1221. [PMID: 31941670 PMCID: PMC7054879 DOI: 10.1104/pp.19.01002] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Accepted: 01/03/2020] [Indexed: 05/05/2023]
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