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Lovegrove BG. Obligatory Nocturnalism in Triassic Archaic Mammals: Preservation of Sperm Quality? Physiol Biochem Zool 2019; 92:544-553. [DOI: 10.1086/705440] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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202
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Bertrand OC, Shelley SL, Wible JR, Williamson TE, Holbrook LT, Chester SGB, Butler IB, Brusatte SL. Virtual endocranial and inner ear endocasts of the Paleocene 'condylarth' Chriacus: new insight into the neurosensory system and evolution of early placental mammals. J Anat 2019; 236:21-49. [PMID: 31667836 DOI: 10.1111/joa.13084] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/08/2019] [Indexed: 02/06/2023] Open
Abstract
The end-Cretaceous mass extinction allowed placental mammals to diversify ecologically and taxonomically as they filled ecological niches once occupied by non-avian dinosaurs and more basal mammals. Little is known, however, about how the neurosensory systems of mammals changed after the extinction, and what role these systems played in mammalian diversification. We here use high-resolution computed tomography (CT) scanning to describe the endocranial and inner ear endocasts of two species, Chriacus pelvidens and Chriacus baldwini, which belong to a cluster of 'archaic' placental mammals called 'arctocyonid condylarths' that thrived during the ca. 10 million years after the extinction (the Paleocene Epoch), but whose relationships to extant placentals are poorly understood. The endocasts provide new insight into the paleobiology of the long-mysterious 'arctocyonids', and suggest that Chriacus was an animal with an encephalization quotient (EQ) range of 0.12-0.41, which probably relied more on its sense of smell than vision, because the olfactory bulbs are proportionally large but the neocortex and petrosal lobules are less developed. Agility scores, estimated from the dimensions of the semicircular canals of the inner ear, indicate that Chriacus was slow to moderately agile, and its hearing capabilities, estimated from cochlear dimensions, suggest similarities with the extant aardvark. Chriacus shares many brain features with other Paleocene mammals, such as a small lissencephalic brain, large olfactory bulbs and small petrosal lobules, which are likely plesiomorphic for Placentalia. The inner ear of Chriacus also shares derived characteristics of the elliptical and spherical recesses with extinct species that belong to Euungulata, the extant placental group that includes artiodactyls and perissodactyls. This lends key evidence to the hypothesized close relationship between Chriacus and the extant ungulate groups, and demonstrates that neurosensory features can provide important insight into both the paleobiology and relationships of early placental mammals.
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Affiliation(s)
- Ornella C Bertrand
- School of GeoSciences, University of Edinburgh, Grant Institute, Edinburgh, UK
| | - Sarah L Shelley
- Section of Mammals, Carnegie Museum of Natural History, Pittsburgh, PA, USA
| | - John R Wible
- Section of Mammals, Carnegie Museum of Natural History, Pittsburgh, PA, USA
| | | | - Luke T Holbrook
- Department of Biological Sciences, Rowan University, Glassboro, NJ, USA
| | - Stephen G B Chester
- Department of Anthropology and Archaeology, Brooklyn College, City University of New York, Brooklyn, NY, USA.,Department of Anthropology, The Graduate Center, City University of New York, New York, NY, USA.,New York Consortium in Evolutionary Primatology, New York, NY, USA
| | - Ian B Butler
- School of GeoSciences, University of Edinburgh, Grant Institute, Edinburgh, UK
| | - Stephen L Brusatte
- School of GeoSciences, University of Edinburgh, Grant Institute, Edinburgh, UK.,New Mexico Museum of Natural History and Science, Albuquerque, NM, USA
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203
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Lyson TR, Miller IM, Bercovici AD, Weissenburger K, Fuentes AJ, Clyde WC, Hagadorn JW, Butrim MJ, Johnson KR, Fleming RF, Barclay RS, Maccracken SA, Lloyd B, Wilson GP, Krause DW, Chester SGB. Exceptional continental record of biotic recovery after the Cretaceous–Paleogene mass extinction. Science 2019; 366:977-983. [DOI: 10.1126/science.aay2268] [Citation(s) in RCA: 73] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Accepted: 10/15/2019] [Indexed: 11/02/2022]
Abstract
We report a time-calibrated stratigraphic section in Colorado that contains unusually complete fossils of mammals, reptiles, and plants and elucidates the drivers and tempo of biotic recovery during the poorly known first million years after the Cretaceous–Paleogene mass extinction (KPgE). Within ~100 thousand years (ka) post-KPgE, mammalian taxonomic richness doubled, and maximum mammalian body mass increased to near pre-KPgE levels. A threefold increase in maximum mammalian body mass and dietary niche specialization occurred at ~300 ka post-KPgE, concomitant with increased megafloral standing species richness. The appearance of additional large mammals occurred by ~700 ka post-KPgE, coincident with the first appearance of Leguminosae (the bean family). These concurrent plant and mammal originations and body-mass shifts coincide with warming intervals, suggesting that climate influenced post-KPgE biotic recovery.
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204
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Marcovitz A, Turakhia Y, Chen HI, Gloudemans M, Braun BA, Wang H, Bejerano G. A functional enrichment test for molecular convergent evolution finds a clear protein-coding signal in echolocating bats and whales. Proc Natl Acad Sci U S A 2019; 116:21094-21103. [PMID: 31570615 PMCID: PMC6800341 DOI: 10.1073/pnas.1818532116] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
Distantly related species entering similar biological niches often adapt by evolving similar morphological and physiological characters. How much genomic molecular convergence (particularly of highly constrained coding sequence) contributes to convergent phenotypic evolution, such as echolocation in bats and whales, is a long-standing fundamental question. Like others, we find that convergent amino acid substitutions are not more abundant in echolocating mammals compared to their outgroups. However, we also ask a more informative question about the genomic distribution of convergent substitutions by devising a test to determine which, if any, of more than 4,000 tissue-affecting gene sets is most statistically enriched with convergent substitutions. We find that the gene set most overrepresented (q-value = 2.2e-3) with convergent substitutions in echolocators, affecting 18 genes, regulates development of the cochlear ganglion, a structure with empirically supported relevance to echolocation. Conversely, when comparing to nonecholocating outgroups, no significant gene set enrichment exists. For aquatic and high-altitude mammals, our analysis highlights 15 and 16 genes from the gene sets most affected by molecular convergence which regulate skin and lung physiology, respectively. Importantly, our test requires that the most convergence-enriched set cannot also be enriched for divergent substitutions, such as in the pattern produced by inactivated vision genes in subterranean mammals. Showing a clear role for adaptive protein-coding molecular convergence, we discover nearly 2,600 convergent positions, highlight 77 of them in 3 organs, and provide code to investigate other clades across the tree of life.
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Affiliation(s)
- Amir Marcovitz
- Department of Developmental Biology, Stanford University, Stanford, CA 94305
| | - Yatish Turakhia
- Department of Electrical Engineering, Stanford University, Stanford, CA 94305
| | - Heidi I Chen
- Department of Developmental Biology, Stanford University, Stanford, CA 94305
| | | | - Benjamin A Braun
- Department of Computer Science, Stanford University, Stanford, CA 94305
| | - Haoqing Wang
- Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305
| | - Gill Bejerano
- Department of Developmental Biology, Stanford University, Stanford, CA 94305;
- Department of Computer Science, Stanford University, Stanford, CA 94305
- Department of Pediatrics, Stanford University, Stanford, CA 94305
- Department of Biomedical Data Science, Stanford University, Stanford, CA 94305
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205
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Abstract
The poor translational record of pain research has suggested to some observers that species differences in pain biology might be to blame. In this review, I consider the evidence for species similarity and differences in the pain research literature. Impressive feats of translation have been demonstrated in relation to certain genetic effects, social modulation of pain and pain memory. The degree to which pain biology in rodents predicts pain biology in humans has important implications both for evolutionary accounts of pain, but also the success of analgesic drug development going forward. This article is part of the Theo Murphy meeting issue 'Evolution of mechanisms and behaviour important for pain'.
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Affiliation(s)
- Jeffrey S Mogil
- Departments of Psychology and Anesthesia, McGill University, Montreal, Quebec, Canada H3A 1B1
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206
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Cui YM, Wang W, Ferguson DK, Yang J, Wang YF. Fossil evidence reveals how plants responded to cooling during the Cretaceous-Paleogene transition. BMC PLANT BIOLOGY 2019; 19:402. [PMID: 31519148 PMCID: PMC6743113 DOI: 10.1186/s12870-019-1980-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/27/2019] [Accepted: 08/15/2019] [Indexed: 06/10/2023]
Abstract
BACKGROUND Around the Cretaceous-Paleogene (K-Pg) boundary, an obvious global cooling occurred, which resulted in dramatic changes in terrestrial ecosystems and the evolutionary trends of numerous organisms. However, how plant lineages responded to the cooling has remained unknown until now. Between ca. 70-60 Ma Mesocyparis McIver & Basinger (Cupressaceae), an extinct conifer genus, was distributed from eastern Asia to western North America and provides an excellent opportunity to solve this riddle. RESULTS Here we report a new species, Mesocyparis sinica from the early Paleocene of Jiayin, Heilongjiang, northeastern China. By integrating lines of evidence from phylogeny and comparative morphology of Mesocyparis, we found that during ca.70-60 Ma, the size of seed cone of Mesocyparis more than doubled, probably driven by the cooling during the K-Pg transition, which might be an effective adaptation for seed dispersal by animals. More importantly, we discovered that the northern limit of this genus, as well as those of two other arboreal taxa Metasequoia Miki ex Hu et Cheng (gymnosperm) and Nordenskioldia Heer (angiosperm), migrated ca.4-5° southward in paleolatitude during this time interval. CONCLUSIONS Our results suggest that the cooling during the K-Pg transition may have been responsible for the increase in size of the seed cone of Mesocyparis and have driven the migration of plants southwards.
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Affiliation(s)
- Yi-Ming Cui
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093 China
- State Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing, 210008 China
| | - Wei Wang
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093 China
- University of Chinese Academy of Sciences, Beijing, 100049 China
| | - David K. Ferguson
- Department of Palaeontology, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria
| | - Jian Yang
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093 China
- University of Chinese Academy of Sciences, Beijing, 100049 China
| | - Yu-Fei Wang
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093 China
- University of Chinese Academy of Sciences, Beijing, 100049 China
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207
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Sato JJ, Bradford TM, Armstrong KN, Donnellan SC, Echenique-Diaz LM, Begué-Quiala G, Gámez-Díez J, Yamaguchi N, Nguyen ST, Kita M, Ohdachi SD. Post K-Pg diversification of the mammalian order Eulipotyphla as suggested by phylogenomic analyses of ultra-conserved elements. Mol Phylogenet Evol 2019; 141:106605. [PMID: 31479732 DOI: 10.1016/j.ympev.2019.106605] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2018] [Revised: 08/26/2019] [Accepted: 08/27/2019] [Indexed: 11/26/2022]
Abstract
The origin of the mammalian order Eulipotyphla has been debated intensively with arguments around whether they began diversifying before or after the Cretaceous-Palaeogene (K-Pg) boundary at 66 Ma. Here, we used an in-solution nucleotide capture method and next generation DNA sequencing to determine the sequence of hundreds of ultra-conserved elements (UCEs), and conducted phylogenomic and molecular dating analyses for the four extant eulipotyphlan lineages-Erinaceidae, Solenodontidae, Soricidae, and Talpidae. Concatenated maximum-likelihood analyses with single or partitioned models and a coalescent species-tree analysis showed that divergences among the four major eulipotyphlan lineages occurred within a short period of evolutionary time, but did not resolve the interrelationships among them. Alternative suboptimal phylogenetic hypotheses received consistently the same amount of support from different UCE loci, and were not significantly different from the maximum likelihood tree topology, suggesting the prevalence of stochastic lineage sorting. Molecular dating analyses that incorporated among-lineage evolutionary rate differences supported a scenario where the four eulipotyphlan families diversified between 57.8 and 63.2 Ma. Given short branch lengths with low support values, traces of rampant genome-wide stochastic lineage sorting, and post K-Pg diversification, we concluded that the crown eulipotyphlan lineages arose through a rapid diversification after the K-Pg boundary when novel niches were created by the mass extinction of species.
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Affiliation(s)
- Jun J Sato
- Laboratory of Animal Cell Technology, Faculty of Life Science and Technology, Fukuyama University, Higashimuracho, Aza, Sanzo, 985, Fukuyama 729-0292, Japan; School of Biological Sciences, University of Adelaide, Adelaide, South Australia 5005, Australia.
| | - Tessa M Bradford
- School of Biological Sciences, University of Adelaide, Adelaide, South Australia 5005, Australia; South Australian Museum, North Terrace, Adelaide, South Australia 5000, Australia
| | - Kyle N Armstrong
- School of Biological Sciences, University of Adelaide, Adelaide, South Australia 5005, Australia; South Australian Museum, North Terrace, Adelaide, South Australia 5000, Australia
| | - Stephen C Donnellan
- School of Biological Sciences, University of Adelaide, Adelaide, South Australia 5005, Australia; South Australian Museum, North Terrace, Adelaide, South Australia 5000, Australia
| | - Lazaro M Echenique-Diaz
- Environmental Education Center, Miyagi University of Education, Aramaki Aza-Aoba, Aoba-ku, Sendai 980-0845, Japan
| | - Gerardo Begué-Quiala
- Unidad Presupuestada Parque Nacional Alejandro de Humboldt (CITMA), Calle Abogado 14 e/12 y 13 Norte, Guantanamo 95200, Cuba
| | - Jorgelino Gámez-Díez
- Estación Ecológica La Melba, Unidad Presupuestada Parque Nacional Alejandro de Humboldt, CITMA-Guantánamo, Cuba
| | - Nobuyuki Yamaguchi
- Department of Biological and Environmental Sciences, College of Arts and Sciences, Qatar University, PO Box 2713, Doha, Qatar
| | - Son Truong Nguyen
- Institute of Ecology and Biological Resources and Graduate University of Science and Technology, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Hanoi, Viet Nam
| | - Masaki Kita
- Graduate School of Bioagricultural Sciences, Nagoya University Furo-cho, Chikusa, Nagoya 464-8601, Japan
| | - Satoshi D Ohdachi
- Institute of Low Temperature Science, Hokkaido University, Kita-19 Nishi-8, Kita-ku, Sapporo 060-0819, Japan
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208
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209
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Total-Evidence Framework Reveals Complex Morphological Evolution in Nightbirds (Strisores). DIVERSITY-BASEL 2019. [DOI: 10.3390/d11090143] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Strisores is a clade of neoavian birds that include diurnal aerial specialists such as swifts and hummingbirds, as well as several predominantly nocturnal lineages such as nightjars and potoos. Despite the use of genome-scale molecular datasets, the phylogenetic interrelationships among major strisorean groups remain controversial. Given the availability of next-generation sequence data for Strisores and the clade’s rich fossil record, we reassessed the phylogeny of Strisores by incorporating a large-scale sequence dataset with anatomical data from living and fossil strisoreans within a Bayesian total-evidence framework. Combined analyses of molecular and morphological data resulted in a phylogenetic topology for Strisores that is congruent with the findings of two recent molecular phylogenomic studies, supporting nightjars (Caprimulgidae) as the extant sister group of the remainder of Strisores. This total-evidence framework allowed us to identify morphological synapomorphies for strisorean clades previously recovered using molecular-only datasets. However, a combined analysis of molecular and morphological data highlighted strong signal conflict between sequence and anatomical data in Strisores. Furthermore, simultaneous analysis of molecular and morphological data recovered differing placements for some fossil taxa compared with analyses of morphological data under a molecular scaffold, highlighting the importance of analytical decisions when conducting morphological phylogenetic analyses of taxa with molecular phylogenetic data. We suggest that multiple strisorean lineages have experienced convergent evolution across the skeleton, obfuscating the phylogenetic position of certain fossils, and that many distinctive specializations of strisorean subclades were acquired early in their evolutionary history. Despite this apparent complexity in the evolutionary history of Strisores, our results provide fossil support for aerial foraging as the ancestral ecological strategy of Strisores, as implied by recent phylogenetic topologies derived from molecular data.
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210
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211
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Harper T, Rougier GW. Petrosal morphology and cochlear function in Mesozoic stem therians. PLoS One 2019; 14:e0209457. [PMID: 31412094 PMCID: PMC6693738 DOI: 10.1371/journal.pone.0209457] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2018] [Accepted: 06/07/2019] [Indexed: 11/19/2022] Open
Abstract
Here we describe the bony anatomy of the inner ear and surrounding structures seen in three plesiomorphic crown mammalian petrosal specimens. Our study sample includes the triconodont Priacodon fruitaensis from the Upper Jurassic of North America, and two isolated stem therian petrosal specimens colloquially known as the Höövör petrosals, recovered from Aptian-Albian sediments in Mongolia. The second Höövör petrosal is here described at length for the first time. All three of these petrosals and a comparative sample of extant mammalian taxa have been imaged using micro-CT, allowing for detailed anatomical descriptions of the osteological correlates of functionally significant neurovascular features, especially along the abneural wall of the cochlear canal. The high resolution imaging provided here clarifies several hypotheses regarding the mosaic evolution of features of the cochlear endocast in early mammals. In particular, these images demonstrate that the membranous cochlear duct adhered to the bony cochlear canal abneurally to a secondary bony lamina before the appearance of an opposing primary bony lamina or tractus foraminosus. Additionally, while corroborating the general trend of reduction of venous sinuses and plexuses within the pars cochlearis seen in crownward mammaliaforms generally, the Höövör petrosals show the localized enlargement of a portion of the intrapetrosal venous plexus. This new vascular feature is here interpreted as the bony accommodation for the vein of cochlear aqueduct, a structure that is solely, or predominantly, responsible for the venous drainage of the cochlear apparatus in extant therians. Given that our fossil stem therian inner ear specimens appear to have very limited high-frequency capabilities, the development of these modern vascular features of the cochlear endocast suggest that neither the initiation or enlargement of the stria vascularis (a unique mammalian organ) was originally associated with the capacity for high-frequency hearing or precise sound-source localization.
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Affiliation(s)
- Tony Harper
- Center for Functional Anatomy and Evolution, Johns Hopkins University, Baltimore, Maryland, United States of America
| | - Guillermo W. Rougier
- Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, Kentucky, United States of America
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212
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Lorente M. What are the most accurate categories for mammal tarsus arrangement? A review with attention to South American Notoungulata and Litopterna. J Anat 2019; 235:1024-1035. [PMID: 31373392 DOI: 10.1111/joa.13065] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/28/2019] [Indexed: 11/28/2022] Open
Abstract
The arrangement of the tarsus has been used to differentiate afrotherian and laurasiatherian ungulates for more than a century, and it is often present in morphological matrices that include appendicular features. Traditionally, it has two states: (i) an alternating tarsus, where proximal elements are interlocked with central and distal elements positioned like the bricks of a wall; and (ii) a serial tarsus, where elements are not interlocked. Over the years, these states became synonymous with the presence or absence of an astragalocuboid contact. Within the South American order Notoungulata, a third disposition was recognized: the reversed alternating tarsus, associated with a calcaneonavicular contact. This state was considered to be a synapomorphy of 'advanced' Toxodontia families (Notohippidae, Leontiniidae and Toxodontidae), but a further inspection of its distribution shows that it occurs throughout Mammalia. Additionally, it overlaps the serial tarsus condition as originally defined, and it probably has no functional or phylogenetic significance. Calcaneonavicular and astragalocuboid contacts are non-exclusive, and their presence within a species, genus or family is not constant. Serial and alternating imply movements of the articulations of the mid-tarsus in the transverse axis, while reverse alternating refers to a small calcaneonavicular contact that sometimes occurs in a serial condition or to a significant displacement of the tarsal articulations in a different (proximodistal) axis. The proximodistal arrangement of the joints could be functionally significant. Two new states are observed and defined: (i) 'flipped serial', present in Macropodidae, in which the calcaneocuboid articulation is medially displaced and significantly larger than the astragalonavicular contact, but the relationships between proximal and central elements are one to one; and (ii) 'distal cuboid', an extreme proximodistal displacement of the astragalonavicular joint. Serial and alternating, as originally defined (i.e. without any reference to which bone contacts which), seem to be the best states for classifying tarsal arrangement though as the disposition of distal or central bones in relationship to proximal bones.
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Affiliation(s)
- Malena Lorente
- Consejo Nacional de Investigaciones Científicas y Técnicas, División Paleontología Vertebrados, Museo de La Plata, La Plata, Buenos Aires, Argentina
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Gaudry MJ, Keuper M, Jastroch M. Molecular evolution of thermogenic uncoupling protein 1 and implications for medical intervention of human disease. Mol Aspects Med 2019; 68:6-17. [DOI: 10.1016/j.mam.2019.06.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Revised: 06/20/2019] [Accepted: 06/21/2019] [Indexed: 12/12/2022]
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214
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Ni X, Flynn JJ, Wyss AR, Zhang C. Cranial endocast of a stem platyrrhine primate and ancestral brain conditions in anthropoids. SCIENCE ADVANCES 2019; 5:eaav7913. [PMID: 31457077 PMCID: PMC6703862 DOI: 10.1126/sciadv.aav7913] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/22/2018] [Accepted: 07/15/2019] [Indexed: 06/10/2023]
Abstract
Understanding of ancestral conditions for anthropoids has been hampered by the paucity of well-preserved early fossils. Here, we provide an unprecedented view of the cerebral morphology of the 20-million-year-old Chilecebus carrascoensis, the best-preserved early diverging platyrrhine known, obtained via high-resolution CT scanning and 3D digital reconstruction. These analyses are crucial for reconstructing ancestral brain conditions in platyrrhines and anthropoids given the early diverging position of Chilecebus. Although small, the brain of Chilecebus is not lissencephalic and presents at least seven pairs of sulci on its endocast. Comparisons of Chilecebus and other basal anthropoids indicate that the major brain subdivisions of these early anthropoids exhibit no consistent scaling pattern relative to the overall brain size. Many gross cerebral features appear to have transformed in a mosaic fashion and probably have originated in platyrrhine and catarrhine anthropoids independently, involving multiple, independent instances of size increase, as well as some secondary decreases.
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Affiliation(s)
- Xijun Ni
- Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, 142 Xi Zhi Men Wai Street, Beijing 100044, China
- Division of Paleontology and Richard Gilder Graduate School, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA
- CAS Center for Excellence in Life and Paleoenvironment, Beijing 100044, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - John J. Flynn
- Division of Paleontology and Richard Gilder Graduate School, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA
| | - André R. Wyss
- Department of Earth Science, University of California, Santa Barbara, Santa Barbara, CA 93106, USA
| | - Chi Zhang
- Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, 142 Xi Zhi Men Wai Street, Beijing 100044, China
- CAS Center for Excellence in Life and Paleoenvironment, Beijing 100044, China
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215
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Lamichhaney S, Card DC, Grayson P, Tonini JFR, Bravo GA, Näpflin K, Termignoni-Garcia F, Torres C, Burbrink F, Clarke JA, Sackton TB, Edwards SV. Integrating natural history collections and comparative genomics to study the genetic architecture of convergent evolution. Philos Trans R Soc Lond B Biol Sci 2019; 374:20180248. [PMID: 31154982 PMCID: PMC6560268 DOI: 10.1098/rstb.2018.0248] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/25/2019] [Indexed: 12/20/2022] Open
Abstract
Evolutionary convergence has been long considered primary evidence of adaptation driven by natural selection and provides opportunities to explore evolutionary repeatability and predictability. In recent years, there has been increased interest in exploring the genetic mechanisms underlying convergent evolution, in part, owing to the advent of genomic techniques. However, the current 'genomics gold rush' in studies of convergence has overshadowed the reality that most trait classifications are quite broadly defined, resulting in incomplete or potentially biased interpretations of results. Genomic studies of convergence would be greatly improved by integrating deep 'vertical', natural history knowledge with 'horizontal' knowledge focusing on the breadth of taxonomic diversity. Natural history collections have and continue to be best positioned for increasing our comprehensive understanding of phenotypic diversity, with modern practices of digitization and databasing of morphological traits providing exciting improvements in our ability to evaluate the degree of morphological convergence. Combining more detailed phenotypic data with the well-established field of genomics will enable scientists to make progress on an important goal in biology: to understand the degree to which genetic or molecular convergence is associated with phenotypic convergence. Although the fields of comparative biology or comparative genomics alone can separately reveal important insights into convergent evolution, here we suggest that the synergistic and complementary roles of natural history collection-derived phenomic data and comparative genomics methods can be particularly powerful in together elucidating the genomic basis of convergent evolution among higher taxa. This article is part of the theme issue 'Convergent evolution in the genomics era: new insights and directions'.
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Affiliation(s)
- Sangeet Lamichhaney
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
- Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA
| | - Daren C. Card
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
- Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA
- Department of Biology, University of Texas Arlington, Arlington, TX 76019, USA
| | - Phil Grayson
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
- Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA
| | - João F. R. Tonini
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
- Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA
| | - Gustavo A. Bravo
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
- Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA
| | - Kathrin Näpflin
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
- Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA
| | - Flavia Termignoni-Garcia
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
- Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA
| | - Christopher Torres
- Department of Biology, The University of Texas at Austin, Austin, MA 78712, USA
- Department of Geological Sciences, The University of Texas at Austin, Austin, MA 78712, USA
| | - Frank Burbrink
- Department of Herpetology, The American Museum of Natural History, New York, NY 10024, USA
| | - Julia A. Clarke
- Department of Biology, The University of Texas at Austin, Austin, MA 78712, USA
- Department of Geological Sciences, The University of Texas at Austin, Austin, MA 78712, USA
| | | | - Scott V. Edwards
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
- Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA
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216
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Nations JA, Heaney LR, Demos TC, Achmadi AS, Rowe KC, Esselstyn JA. A simple skeletal measurement effectively predicts climbing behaviour in a diverse clade of small mammals. Biol J Linn Soc Lond 2019. [DOI: 10.1093/biolinnean/blz085] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
AbstractArboreal locomotion allows access to above-ground resources and might have fostered the diversification of mammals. Nevertheless, simple morphological measurements that consistently correlate with arboreality remain indefinable. As such, the climbing habits of many species of mammals, living and extinct, remain speculative. We collected quantitative data on the climbing tendencies of 20 species of murine rodents, an ecologically and morphologically diverse clade. We leveraged Bayesian phylogenetic mixed models (BPMMs), incorporating intraspecific variation and phylogenetic uncertainty, to determine which, if any, traits (17 skeletal indices) predict climbing frequency. We used ordinal BPMMs to test the ability of the indices to place 48 murine species that lack quantitative climbing data into three qualitative locomotor categories (terrestrial, general and arboreal). Only two indices (both measures of relative digit length) accurately predict locomotor styles, with manus digit length showing the best fit. Manus digit length has low phylogenetic signal, is largely explained by locomotor ecology and might effectively predict locomotion across a multitude of small mammals, including extinct species. Surprisingly, relative tail length, a common proxy for locomotion, was a poor predictor of climbing. In general, detailed, quantitative natural history data, such as those presented here, are needed to enhance our understanding of the evolutionary and ecological success of clades.
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Affiliation(s)
- Jonathan A Nations
- Museum of Natural Science, Louisiana State University, Baton Rouge, LA, USA
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
| | | | | | - Anang S Achmadi
- Museum Zoologicum Bogoriense, Research Centre for Biology, Cibinong, Jawa Barat, Indonesia
| | - Kevin C Rowe
- Sciences Department, Museum Victoria, Melbourne, VIC, Australia
| | - Jacob A Esselstyn
- Museum of Natural Science, Louisiana State University, Baton Rouge, LA, USA
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
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217
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Coiro M, Doyle JA, Hilton J. How deep is the conflict between molecular and fossil evidence on the age of angiosperms? THE NEW PHYTOLOGIST 2019; 223:83-99. [PMID: 30681148 DOI: 10.1111/nph.15708] [Citation(s) in RCA: 72] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Accepted: 01/04/2019] [Indexed: 05/06/2023]
Abstract
The timing of the origin of angiosperms is a hotly debated topic in plant evolution. Molecular dating analyses that consistently retrieve pre-Cretaceous ages for crown-group angiosperms have eroded confidence in the fossil record, which indicates a radiation and possibly also origin in the Early Cretaceous. Here, we evaluate paleobotanical evidence on the age of the angiosperms, showing how fossils provide crucial data for clarifying the situation. Pollen floras document a Northern Gondwanan appearance of monosulcate angiosperms in the Valanginian and subsequent poleward spread of monosulcates and tricolpate eudicots, accelerating in the Albian. The sequence of pollen types agrees with molecular phylogenetic inferences on the course of pollen evolution, but it conflicts strongly with Triassic and early Jurassic molecular ages, and the discrepancy is difficult to explain by geographic or taphonomic biases. Critical scrutiny shows that supposed pre-Cretaceous angiosperms either represent other plant groups or lack features that might confidently assign them to the angiosperms. However, the record may allow the Late Jurassic existence of ecologically restricted angiosperms, like those seen in the basal ANITA grade. Finally, we examine recently recognized biases in molecular dating and argue that a thoughtful integration of fossil and molecular evidence could help resolve these conflicts.
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Affiliation(s)
- Mario Coiro
- Department of Systematic and Evolutionary Botany, University of Zurich, 8008, Zurich, Switzerland
| | - James A Doyle
- Department of Evolution and Ecology, University of California, Davis, CA, 95616, USA
| | - Jason Hilton
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
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218
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Sim J, Sockolosky JT, Sangalang E, Izquierdo S, Pedersen D, Harriman W, Wibowo AS, Carter J, Madan A, Doyle L, Harrabi O, Kauder SE, Chen A, Kuo TC, Wan H, Pons J. Discovery of high affinity, pan-allelic, and pan-mammalian reactive antibodies against the myeloid checkpoint receptor SIRPα. MAbs 2019; 11:1036-1052. [PMID: 31257988 PMCID: PMC6748616 DOI: 10.1080/19420862.2019.1624123] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
Targeting the CD47-signal-regulatory protein α (SIRPα) pathway represents a novel therapeutic approach to enhance anti-cancer immunity by promoting both innate and adaptive immune responses. Unlike CD47, which is expressed ubiquitously, SIRPα expression is mainly restricted to myeloid cells and neurons. Therefore, compared to CD47-targeted therapies, targeting SIRPα may result in differential safety and efficacy profiles, potentially enabling lower effective doses and improved pharmacokinetics and pharmacodynamics. The development of effective SIRPα antagonists is restricted by polymorphisms within the CD47-binding domain of SIRPα, necessitating pan-allele reactive anti-SIRPα antibodies for therapeutic intervention in diverse patient populations. We immunized wild-type and human antibody transgenic chickens with a multi-allele and multi-species SIRPα regimen in order to discover pan-allelic and pan-mammalian reactive anti-SIRPα antibodies suitable for clinical translation. A total of 200 antibodies were isolated and screened for SIRPα reactivity from which approximately 70 antibodies with diverse SIRPα binding profiles, sequence families, and epitopes were selected for further characterization. A subset of anti-SIRPα antibodies bound to both human SIRPα v1 and v2 alleles with high affinity ranging from low nanomolar to picomolar, potently antagonized the CD47/SIRPα interaction, and potentiated macrophage-mediated antibody-dependent cellular phagocytosis in vitro. X-ray crystal structures of five anti-SIRPα antigen-binding fragments, each with unique epitopes, in complex with SIRPα (PDB codes 6NMV, 6NMU, 6NMT, 6NMS, and 6NMR) are reported. Furthermore, some of the anti-SIRPα antibodies cross-react with cynomolgus SIRPα and various mouse SIRPα alleles (BALB/c, NOD, BL/6), which can facilitate preclinical to clinical development. These properties provide an attractive rationale to advance the development of these anti-SIRPα antibodies as a novel therapy for advanced malignancies. Abbreviations: ADCC: antibody-dependent cellular cytotoxicity; ADCP: antibody-dependent cellular phagocytosis; CFSE: carboxyfluorescein succinimidyl ester; Fab: fragment antigen binding; Fc: fragment crystallizable; FcγR: Fcγ receptor; Ig: immunoglobulin; IND: investigational new drug; MDM⊘: monocyte-derived macrophage; NOD: non-obese diabetic; scFv: single chain fragment variable; SCID: severe combined immunodeficiency; SIRP: signal-regulatory protein.
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Affiliation(s)
- Janet Sim
- a ALX Oncology, Departments of Protein Sciences and Translational Biology , Burlingame , CA , USA
| | - Jonathan T Sockolosky
- a ALX Oncology, Departments of Protein Sciences and Translational Biology , Burlingame , CA , USA
| | - Emma Sangalang
- a ALX Oncology, Departments of Protein Sciences and Translational Biology , Burlingame , CA , USA
| | | | | | | | | | | | - Anup Madan
- d Covance Genomics Laboratory , Redmond , WA , USA
| | - Laura Doyle
- a ALX Oncology, Departments of Protein Sciences and Translational Biology , Burlingame , CA , USA
| | - Ons Harrabi
- a ALX Oncology, Departments of Protein Sciences and Translational Biology , Burlingame , CA , USA
| | - Steven E Kauder
- a ALX Oncology, Departments of Protein Sciences and Translational Biology , Burlingame , CA , USA
| | - Amy Chen
- a ALX Oncology, Departments of Protein Sciences and Translational Biology , Burlingame , CA , USA
| | - Tracy C Kuo
- a ALX Oncology, Departments of Protein Sciences and Translational Biology , Burlingame , CA , USA
| | - Hong Wan
- a ALX Oncology, Departments of Protein Sciences and Translational Biology , Burlingame , CA , USA
| | - Jaume Pons
- a ALX Oncology, Departments of Protein Sciences and Translational Biology , Burlingame , CA , USA
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219
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Monson TA, Boisserie J, Brasil MF, Clay SM, Dvoretzky R, Ravindramurthy S, Schmitt CA, Souron A, Takenaka R, Ungar PS, Yoo S, Zhou M, Zuercher ME, Hlusko LJ. Evidence of strong stabilizing effects on the evolution of boreoeutherian (Mammalia) dental proportions. Ecol Evol 2019; 9:7597-7612. [PMID: 31346425 PMCID: PMC6635932 DOI: 10.1002/ece3.5309] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2019] [Revised: 04/25/2019] [Accepted: 04/28/2019] [Indexed: 11/28/2022] Open
Abstract
The dentition is an extremely important organ in mammals with variation in timing and sequence of eruption, crown morphology, and tooth size enabling a range of behavioral, dietary, and functional adaptations across the class. Within this suite of variable mammalian dental phenotypes, relative sizes of teeth reflect variation in the underlying genetic and developmental mechanisms. Two ratios of postcanine tooth lengths capture the relative size of premolars to molars (premolar-molar module, PMM), and among the three molars (molar module component, MMC), and are known to be heritable, independent of body size, and to vary significantly across primates. Here, we explore how these dental traits vary across mammals more broadly, focusing on terrestrial taxa in the clade of Boreoeutheria (Euarchontoglires and Laurasiatheria). We measured the postcanine teeth of N = 1,523 boreoeutherian mammals spanning six orders, 14 families, 36 genera, and 49 species to test hypotheses about associations between dental proportions and phylogenetic relatedness, diet, and life history in mammals. Boreoeutherian postcanine dental proportions sampled in this study carry conserved phylogenetic signal and are not associated with variation in diet. The incorporation of paleontological data provides further evidence that dental proportions may be slower to change than is dietary specialization. These results have implications for our understanding of dental variation and dietary adaptation in mammals.
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Affiliation(s)
- Tesla A. Monson
- Department of Integrative BiologyUniversity of CaliforniaBerkeleyCalifornia
- Human Evolution Research CenterUniversity of CaliforniaBerkeleyCalifornia
- Museum of Vertebrate ZoologyUniversity of CaliforniaBerkeleyCalifornia
- Anthropologisches Institut und MuseumUniversität ZürichZürichSwitzerland
| | | | - Marianne F. Brasil
- Department of Integrative BiologyUniversity of CaliforniaBerkeleyCalifornia
- Human Evolution Research CenterUniversity of CaliforniaBerkeleyCalifornia
| | - Selene M. Clay
- Department of Integrative BiologyUniversity of CaliforniaBerkeleyCalifornia
- Department of Human GeneticsUniversity of ChicagoChicagoIllinois
| | - Rena Dvoretzky
- Department of Integrative BiologyUniversity of CaliforniaBerkeleyCalifornia
| | | | | | | | - Risa Takenaka
- Department of Integrative BiologyUniversity of CaliforniaBerkeleyCalifornia
- Museum of Vertebrate ZoologyUniversity of CaliforniaBerkeleyCalifornia
| | - Peter S. Ungar
- Department of AnthropologyUniversity of ArkansasFayettevilleArkansas
| | - Sunwoo Yoo
- Department of Integrative BiologyUniversity of CaliforniaBerkeleyCalifornia
| | - Michael Zhou
- Department of Integrative BiologyUniversity of CaliforniaBerkeleyCalifornia
| | | | - Leslea J. Hlusko
- Department of Integrative BiologyUniversity of CaliforniaBerkeleyCalifornia
- Human Evolution Research CenterUniversity of CaliforniaBerkeleyCalifornia
- Museum of Vertebrate ZoologyUniversity of CaliforniaBerkeleyCalifornia
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220
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O'leary MA, Bouaré ML, Claeson KM, Heilbronn K, Hill RV, Mccartney J, Sessa JA, Sissoko F, Tapanila L, Wheeler E, Roberts EM. Stratigraphy and Paleobiology of the Upper Cretaceous-Lower Paleogene Sediments from the Trans-Saharan Seaway in Mali. BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY 2019. [DOI: 10.1206/0003-0090.436.1.1] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Maureen A. O'leary
- Department of Anatomical Sciences, Renaissance School of Medicine, Stony Brook University; Division of Paleontology, American Museum of Natural History
| | | | - Kerin M. Claeson
- Department of Bio-Medical Sciences, Philadelphia College of Osteopathic Medicine
| | - Kelly Heilbronn
- Geosciences, College of Science and Engineering, James Cook University, Townsville, Australia
| | - Robert V. Hill
- Department of Science Education, Zucker School of Medicine at Hofstra/Northwell, Hofstra University, Hempstead, New York
| | - Jacob Mccartney
- Department of Biology, State University of New York College at Geneseo
| | - Jocelyn A. Sessa
- Academy of Natural Sciences of Drexel University, Philadelphia Division of Paleontology, American Museum of Natural History
| | - Famory Sissoko
- Institut des Sciences Humaines, Bamako, Republic of Mali
| | - Leif Tapanila
- Department of Geosciences, Idaho State University, Pocatello; Division of Earth Science, Idaho Museum of Natural History
| | - Elisabeth Wheeler
- Department of Research and Collections, North Carolina Museum of Natural Sciences; Department of Forest Biomaterials, North Carolina State University, Raleigh
| | - Eric M. Roberts
- Geosciences, College of Science and Engineering, James Cook University, Townsville, Australia
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221
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Huang JP, Kraichak E, Leavitt SD, Nelsen MP, Lumbsch HT. Accelerated diversifications in three diverse families of morphologically complex lichen-forming fungi link to major historical events. Sci Rep 2019; 9:8518. [PMID: 31253825 PMCID: PMC6599062 DOI: 10.1038/s41598-019-44881-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Accepted: 05/20/2019] [Indexed: 11/09/2022] Open
Abstract
Historical mass extinction events had major impacts on biodiversity patterns. The most recent and intensively studied event is the Cretaceous - Paleogene (K-Pg) boundary (ca. 66 million years ago [MYA]). However, the factors that may have impacted diversification dynamics vary across lineages. We investigated the macroevolutionary dynamics with a specific focus on the impact of major historical events such as the K-Pg mass extinction event on two major subclasses - Lecanoromycetidae and Ostropomycetidae - of lichen-forming fungi and tested whether variation in the rate of diversification can be associated with the evolution of a specific trait state - macrolichen. Our results reveal accelerated diversification events in three families of morphologically complex lichen-forming fungi - Cladoniaceae, Parmeliaceae, and Peltigeraceae - which are from the subclass Lecanoromycetidae and mostly composed of macrolichens, those that form three dimensional structures. Our RTT plot result for the subclass Lecanoromycetidae also reveals accelerated diversification. Changes in diversification rates occurred around the transition between Mesozoic and Cenozoic eras and was likely related to the K-Pg mass extinction event. The phylogenetic positions for rate increases estimated based on marginal shift probability are, however, scattered from 100 to 40 MYA preventing us from making explicit inference. Although we reveal that the phenotypic state of macrolichens is associated with a higher diversification rate than microlichens, we also show that the evolution of macrolichens predated the K-Pg event. Furthermore, the association between macrolichens and increased diversification is not universal and can be explained, in part, by phylogenetic relatedness. By investigating the macroevolutionary dynamics of lichen-forming fungi our study provides a new empirical system suitable to test the effect of major historical event on shaping biodiversity patterns and to investigate why changes in biodiversity patterns are not in concordance across clades. Our results imply that multiple historical events during the transition from Mesozoic to Cenozoic eras, including the K-Pg mass extinction event, impacted the evolutionary dynamics in lichen-forming fungi. However, future studies focusing on individual lichen-forming fungal families are required to ascertain whether diversification rates are associated with growth form and certain geological events.
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Affiliation(s)
- Jen-Pan Huang
- Integrative Research Center, The Field Museum, Chicago, IL, 60605, USA. .,Biodiversity Research Center, Academia Sinica, Taipei, Taiwan.
| | - Ekaphan Kraichak
- Department of Botany, Faculty of Science, Kasetsart University, Bangkok, Thailand
| | - Steven D Leavitt
- Department of Biology and M. L. Bean Life Science Museum, Brigham Young University, Provo, UT, 84602, USA
| | - Matthew P Nelsen
- Integrative Research Center, The Field Museum, Chicago, IL, 60605, USA
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222
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Grossnickle DM, Smith SM, Wilson GP. Untangling the Multiple Ecological Radiations of Early Mammals. Trends Ecol Evol 2019; 34:936-949. [PMID: 31229335 DOI: 10.1016/j.tree.2019.05.008] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2019] [Revised: 05/14/2019] [Accepted: 05/21/2019] [Indexed: 11/16/2022]
Abstract
The ecological diversification of early mammals is one of the most globally transformative events in Earth's history and the Cretaceous Terrestrial Revolution (KTR) and end-Cretaceous mass extinction are commonly hailed as catalysts. However, a confounding issue when examining this diversification is that it comprised nested radiations of mammalian subclades within the broader scope of mammalian evolution. In the past 200 million years, various independent groups experienced large-scale radiations, each involving ecological diversification from ancestral lineages of small insectivores; examples include Jurassic mammaliaforms, Late Cretaceous metatherians, and Cenozoic placentals. Here, we review these ecological radiations, highlighting the nuanced complexity of early mammal evolution, the value of ecomorphological fossil data, and the importance of phylogenetic context in macroevolutionary studies.
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Affiliation(s)
| | - Stephanie M Smith
- Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA
| | - Gregory P Wilson
- Department of Biology, University of Washington, Seattle, WA, USA
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223
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Lanzetti A. Prenatal developmental sequence of the skull of minke whales and its implications for the evolution of mysticetes and the teeth-to-baleen transition. J Anat 2019; 235:725-748. [PMID: 31216066 DOI: 10.1111/joa.13029] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/15/2019] [Indexed: 12/13/2022] Open
Abstract
Baleen whales (Mysticeti) have an extraordinary fossil record documenting the transition from toothed raptorial taxa to modern species that bear baleen plates, keratinous bristles employed in filter-feeding. Remnants of their toothed ancestry can be found in their ontogeny, as they still develop tooth germs in utero. Understanding the developmental transition from teeth to baleen and the associated skull modifications in prenatal specimens of extant species can enhance our understanding of the evolutionary history of this lineage by using ontogeny as a relative proxy of the evolutionary changes observed in the fossil record. Although at present very little information is available on prenatal development of baleen whales, especially regarding tooth resorption and baleen formation, due to a lack of specimens. Here I present the first detailed description of prenatal specimens of minke whales (Balaenoptera acutorostrata and Balaenoptera bonaerensis), focusing on the skull anatomy and tooth germ development, resorption, and baleen growth. The ontogenetic sequence described consists of 10 specimens of both minke whale species, from the earliest fetal stages to full term. The internal skull anatomy of the specimens was visualized using traditional and iodine-enhanced computed tomography scanning. These high-quality data allow detailed description of skull development both qualitatively and quantitatively using three-dimensional landmark analysis. I report distinctive external anatomical changes and the presence of a denser tissue medial to the tooth germs in specimens from the final portion of gestation, which can be interpreted as the first signs of baleen formation (baleen rudiments). Tooth germs are only completely resorbed just before the eruption of the baleen from the gums, and they are still present for a brief period with baleen rudiments. Skull shape development is characterized by progressive elongation of the rostrum relative to the braincase and by the relative anterior movement of the supraoccipital shield, contributing to a defining feature of cetaceans, telescoping. These data aid the interpretation of fossil morphologies, especially of those extinct taxa where there is no direct evidence of presence of baleen, even if caution is needed when comparing prenatal extant specimens with adult fossils. The ontogeny of other mysticete species needs to be analyzed before drawing definitive conclusions about the influence of development on the evolution of this group. Nonetheless, this work is the first step towards a deeper understanding of the most distinctive patterns in prenatal skull development of baleen whales, and of the anatomical changes that accompany the transition from tooth germs to baleen. It also presents comprehensive hypotheses to explain the influence of developmental processes on the evolution of skull morphology and feeding adaptations of mysticetes.
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Affiliation(s)
- Agnese Lanzetti
- Department of Biology, San Diego State University, San Diego, CA, USA
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224
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Forasiepi AM, Macphee RD, Pino SHD. Caudal Cranium of Thylacosmilus atrox (Mammalia, Metatheria, Sparassodonta), a South American Predaceous Sabertooth. BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY 2019. [DOI: 10.1206/0003-0090.433.1.1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
| | - Ross D.E. Macphee
- Department of Mammalogy, American Museum of Natural History, New York
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225
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Sixty-six million years along the road of mammalian ecomorphological specialization. Proc Natl Acad Sci U S A 2019; 116:12698-12703. [PMID: 31182613 DOI: 10.1073/pnas.1821825116] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The fossil record of the large terrestrial mammals of the North American Cenozoic has previously been quantitatively summarized in six sequential episodes of faunal associations-"evolutionary faunas"-that correspond well with previously proposed qualitative "Chronofaunas." Here, we investigate the ecological spectrum of these faunas by classifying their major taxonomic components into discrete ecomorphological categories of diet, locomotion, and body size. To specifically address the potential influence of long-term climatic shifts on the ecomorphological composition of these faunas, we analyze via contingency tables and detrended correspondence analyses the frequency distribution of ecomorph types within faunas. We show that each evolutionary fauna has a unique, nonrandom association of ecomorphs, and we identify a long-term trend toward greater ecomorphological specialization over successive faunas during the past 66 My. Major vegetation shifts induced by climatic changes appear to underlie the ecomorphological dynamics of these six temporal associations that summarize Cenozoic North American mammalian evolutionary history.
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226
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Johnson KP, Nguyen NP, Sweet AD, Boyd BM, Warnow T, Allen JM. Simultaneous radiation of bird and mammal lice following the K-Pg boundary. Biol Lett 2019; 14:rsbl.2018.0141. [PMID: 29794007 DOI: 10.1098/rsbl.2018.0141] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2018] [Accepted: 04/27/2018] [Indexed: 12/30/2022] Open
Abstract
The diversification of parasite groups often occurs at the same time as the diversification of their hosts. However, most studies demonstrating this concordance only examine single host-parasite groups. Multiple diverse lineages of ectoparasitic lice occur across both birds and mammals. Here, we describe the evolutionary history of lice based on analyses of 1107 single-copy orthologous genes from sequenced genomes of 46 species of lice. We identify three major diverse groups of lice: one exclusively on mammals, one almost exclusively on birds and one on both birds and mammals. Each of these groups radiated just after the Cretaceous-Paleogene (K-Pg) boundary, the time of the mass extinction event of the dinosaurs and rapid diversification of most of the modern lineages of birds and mammals.
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Affiliation(s)
- Kevin P Johnson
- Illinois Natural History Survey, Prairie Research Institute, University of Illinois, 1816 South Oak Street, Champaign, IL 61820, USA
| | - Nam-Phuong Nguyen
- Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA 92093, USA
| | - Andrew D Sweet
- Illinois Natural History Survey, Prairie Research Institute, University of Illinois, 1816 South Oak Street, Champaign, IL 61820, USA.,Program in Ecology, Evolution, and Conservation Biology, School of Integrative Biology, University of Illinois, Urbana, IL 61801, USA
| | - Bret M Boyd
- Illinois Natural History Survey, Prairie Research Institute, University of Illinois, 1816 South Oak Street, Champaign, IL 61820, USA.,Department of Entomology, University of Georgia, Athens, GA 30602, USA
| | - Tandy Warnow
- Department of Computer Science, University of Illinois, Urbana, IL 61801, USA.,Department of Bioengineering, University of Illinois, Urbana, IL 61801, USA
| | - Julie M Allen
- Illinois Natural History Survey, Prairie Research Institute, University of Illinois, 1816 South Oak Street, Champaign, IL 61820, USA.,Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA
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227
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Al Sayad S, Yassin A. Quantifying the extent of morphological homoplasy: A phylogenetic analysis of 490 characters in Drosophila. Evol Lett 2019; 3:286-298. [PMID: 31171984 PMCID: PMC6546384 DOI: 10.1002/evl3.115] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2018] [Revised: 03/28/2019] [Accepted: 04/05/2019] [Indexed: 12/31/2022] Open
Abstract
Homoplasy is a fundamental phenomenon in evolutionary biology but an appraisal of its extent at the morphological level is still lacking. Here, we analyzed the evolution of 490 morphological characters conceptualized among 56 drosophilid species. We found that two thirds of morphological changes were homoplastic and that the level of homoplasy depended on the stage of development and the type of the organ, with the adult terminalia being the least homoplastic. In spite of its predominance at the character change level, homoplasy accounts for only ∼13% of between species similarities in pairwise comparisons. These results provide empirical insights on the limits of morphological changes and the frequency of recurrent evolution.
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Affiliation(s)
- Sinan Al Sayad
- Institut Systématique Evolution Biodiversité (ISYEB)Centre National de la Recherche Scientifique, MNHN, Sorbonne Université, EPHE57 rue Cuvier, CP 50,75005ParisFrance
| | - Amir Yassin
- Institut Systématique Evolution Biodiversité (ISYEB)Centre National de la Recherche Scientifique, MNHN, Sorbonne Université, EPHE57 rue Cuvier, CP 50,75005ParisFrance
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228
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Booth W. Evolution: Bedbugs Evolved before Their Assumed Ancestral Host. Curr Biol 2019; 29:R413-R415. [DOI: 10.1016/j.cub.2019.04.051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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229
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Mongle CS, Strait DS, Grine FE. Expanded character sampling underscores phylogenetic stability of Ardipithecus ramidus as a basal hominin. J Hum Evol 2019; 131:28-39. [DOI: 10.1016/j.jhevol.2019.03.006] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2018] [Revised: 02/24/2019] [Accepted: 03/01/2019] [Indexed: 11/16/2022]
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230
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Ashwell KWS, Gurovich Y. Quantitative analysis of forebrain pallial morphology in monotremes and comparison with that in therians. ZOOLOGY 2019; 134:38-57. [PMID: 31146906 DOI: 10.1016/j.zool.2019.04.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Revised: 04/02/2019] [Accepted: 04/03/2019] [Indexed: 10/27/2022]
Abstract
We have made quantitative volumetric analyses of cerebral cortical (pallial) structures in the brains of three species of monotreme (Ornithorhynchus anatinus, Tachyglossus aculeatus, Zaglossus bruijni) and compared the findings with similar measurements in a range of therian mammals (6 marsupials and 50 placentals). We have found that although the iso- and periallocortical grey matter volume of the monotremes is about what would be expected for their brain size, the proportion of iso- and periallocortical white matter in monotremes is substantially lower than that in the forebrains of therians. This suggests that the forebrains of the three monotremes have fewer association, commissural and/or projection connections than those of similarly sized forebrains of therian mammals. We also found that the iso- and periallocortex of the platypus is relatively smooth-surfaced compared to similarly sized brains of therian mammals, with a distinct caudal shift in the positioning of cortical white matter in the forebrain, consistent with expansion of the posterior thalamic radiation. Central laminated olfactory structures (anterior olfactory nucleus and piriform cortex) are large in the tachyglossid monotremes (Tachyglossus aculeatus and Zaglossus bruijni) and large in xenarthran placental mammals, suggesting convergence of the forebrain structure of monotreme formivores with that of similarly specialized therians like the xenarthrans Myrmecophaga tridactyla and Dasypus novemcinctus.
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Affiliation(s)
- Ken W S Ashwell
- Department of Anatomy, School of Medical Sciences, The University of New South Wales, 2052, New South Wales, Australia.
| | - Yamila Gurovich
- Department of Anatomy, School of Medical Sciences, The University of New South Wales, 2052, New South Wales, Australia; CIEMEP, CONICET-UNPSJB, Roca 780, Esquel, 9200, Chubut, Argentina.
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231
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Eldridge MDB, Beck RMD, Croft DA, Travouillon KJ, Fox BJ. An emerging consensus in the evolution, phylogeny, and systematics of marsupials and their fossil relatives (Metatheria). J Mammal 2019. [DOI: 10.1093/jmammal/gyz018] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Affiliation(s)
- Mark D B Eldridge
- Australian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia
| | - Robin M D Beck
- School of Environment and Life Sciences, University of Salford, Manchester, United Kingdom
| | - Darin A Croft
- School of Medicine, Case Western Reserve University, Cleveland, OH, USA
| | | | - Barry J Fox
- School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales, Australia
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232
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Solari S, Sotero-Caio CG, Baker RJ. Advances in systematics of bats: towards a consensus on species delimitation and classifications through integrative taxonomy. J Mammal 2019. [DOI: 10.1093/jmammal/gyy168] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Affiliation(s)
- Sergio Solari
- Instituto de Biología, Universidad de Antioquia, Medellín, Colombia
| | - Cibele G Sotero-Caio
- Departamento de Genética, Universidade Federal de Pernambuco, Cidade Universitária, Recife, PE, Brazil
| | - Robert J Baker
- Department of Biological Sciences, Texas Tech University, Lubbock, TX, USA
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233
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Sookias RB. Exploring the effects of character construction and choice, outgroups and analytical method on phylogenetic inference from discrete characters in extant crocodilians. Zool J Linn Soc 2019. [DOI: 10.1093/zoolinnean/zlz015] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Abstract
Phylogenies for fossil taxa must be inferred from morphology, but accuracy of inference is questionable. Here, morphological characters for extant crocodilians are investigated to assess how to improve inference accuracy. The homoplasy of characters is assessed against a DNA-based phylogenetic tree. Cranial characters are significantly less homoplastic, but this result is perhaps confounded by research effort. Meristic characters are significantly more homoplastic and should be used with caution. Characters were reassessed first hand and documented. Those characters passing tests of robust construction are significantly less homoplastic. Suggestions are made for means to improve coding of discrete characters. Phylogenies inferred using only robust characters and a reassessed matrix, including corrected scorings, were not overall closer to the DNA tree, but did often place the gharial (Gavialis) in a position agreeing with or closer to it. The effects of the choice of analytical method were modest, but Bayesian analysis of the reassessed matrix placed Gavialis and Mecistops (slender-snouted crocodile) in DNA-concordant positions. Use of extant rather than extinct outgroups, even with the original matrix, placed Gavialis in a more DNA-concordant position, as did factoring out 3D skull shape. The morphological case for placement of Gavialis outside other extant crocodilians is arguably overstated, with many characters linked to skull shape.
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Affiliation(s)
- Roland B Sookias
- Museum für Naturkunde, Leibniz-Institut für Evolutions- und Biodiversitätsforschung, Invalidenstraße, Berlin, Germany
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234
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Comparative morphology of the primate tongue. Ann Anat 2019; 223:19-31. [DOI: 10.1016/j.aanat.2019.01.008] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2018] [Accepted: 01/15/2019] [Indexed: 10/27/2022]
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235
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Xiao Y, Xiao G, Liu H, Zhao X, Sun C, Tan X, Sun K, Liu S, Feng J. Captivity causes taxonomic and functional convergence of gut microbial communities in bats. PeerJ 2019; 7:e6844. [PMID: 31106061 PMCID: PMC6499062 DOI: 10.7717/peerj.6844] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2018] [Accepted: 03/18/2019] [Indexed: 12/22/2022] Open
Abstract
Background Diet plays a crucial role in sculpting microbial communities. Similar diets appear to drive convergence of gut microbial communities between host species. Captivity usually provides an identical diet and environment to different animal species that normally have similar diets. Whether different species’ microbial gut communities can be homogenized by a uniform diet in captivity remains unclear. Methods In this study, we compared gut microbial communities of three insectivorous bat species (Rhinolophus ferrumequinum, Vespertilio sinensis, and Hipposideros armiger) in captivity and in the wild using 16S rDNA sequencing. In captivity, R. ferrumequinum and V. sinensis were fed yellow mealworms, while H. armiger was fed giant mealworms to rule out the impact of an identical environment on the species’ gut microbial communities. Results We found that the microbial communities of the bat species we studied clustered by species in the wild, while the microbial communities of R. ferrumequinum and V. sinensis in captivity clustered together. All microbial functions found in captive V. sinensis were shared by R. ferrumequinum. Moreover, the relative abundances of all metabolism related KEGG pathways did not significantly differ between captive R. ferrumequinum and V. sinensis; however, the relative abundance of “Glycan Biosynthesis and Metabolism” differed significantly between wild R. ferrumequinum and V. sinensis. Conclusion Our results suggest that consuming identical diets while in captivity tends to homogenize the gut microbial communities among bat species. This study further highlights the importance of diet in shaping animal gut microbiotas.
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Affiliation(s)
- Yanhong Xiao
- Jilin Provincial Key Laboratory of Animal Resource Conservation and Utilization, Northeast Normal University, Changchun, Jilin, China
| | - Guohong Xiao
- Jilin Provincial Key Laboratory of Animal Resource Conservation and Utilization, Northeast Normal University, Changchun, Jilin, China
| | - Heng Liu
- Jilin Provincial Key Laboratory of Animal Resource Conservation and Utilization, Northeast Normal University, Changchun, Jilin, China
| | - Xin Zhao
- Jilin Provincial Key Laboratory of Animal Resource Conservation and Utilization, Northeast Normal University, Changchun, Jilin, China
| | - Congnan Sun
- Jilin Provincial Key Laboratory of Animal Resource Conservation and Utilization, Northeast Normal University, Changchun, Jilin, China
| | - Xiao Tan
- Jilin Provincial Key Laboratory of Animal Resource Conservation and Utilization, Northeast Normal University, Changchun, Jilin, China
| | - Keping Sun
- Jilin Provincial Key Laboratory of Animal Resource Conservation and Utilization, Northeast Normal University, Changchun, Jilin, China
| | - Sen Liu
- Institute of Resources & Environment, Henan Polytechnic University, Jiaozuo, Henan, China
| | - Jiang Feng
- Jilin Provincial Key Laboratory of Animal Resource Conservation and Utilization, Northeast Normal University, Changchun, Jilin, China.,College of Life Science, Jilin Agricultural University, Changchun, Jilin, China
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Heck CT, Varricchio DJ, Gaudin TJ, Woodward HN, Horner JR. Ontogenetic changes in the long bone microstructure in the nine-banded armadillo (Dasypus novemcinctus). PLoS One 2019; 14:e0215655. [PMID: 31022247 PMCID: PMC6483220 DOI: 10.1371/journal.pone.0215655] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2019] [Accepted: 04/07/2019] [Indexed: 12/22/2022] Open
Abstract
Analysis of ontogenetic changes in long bone microstructure aid in vertebrate life history reconstructions. Specifically, osteohistological examination of common fauna can be used to infer growth strategies of biologically uncommon, threatened, or extinct vertebrates. Although nine-banded armadillo biology has been studied extensively, work on growth history is limited. Here we describe long bone microstructure in tibiae and femora of a limited ontogenetic series of nine- banded armadillos (Dasypus novemcinctus) to elucidate patterns of bone growth. The cortex of the smallest individual is composed of compacted coarse cancellous bone (CCCB) and woven tissue. Extensive cortical drift is driven by periosteal erosion and further compaction of trabeculae resulting in an increase in the amount of CCCB. The cortex of the largest specimens is primarily CCCB with thickened endosteal bone and thin outer cortices of lamellar and parallel-fibered tissue. The outer cortices of the largest individuals are interpreted as an external fundamental system (EFS) indicating a cessation of appositional bone growth corresponding to skeletal maturity (i.e. asymptotic or adult size). The EFS forms in femora prior to tibiae, indicating femoral growth rates begin decreasing earlier than tibial in D. novemcinctus. Growth trends in common fauna like the nine-banded armadillo can be used as a foundation for understanding life histories of related, but uncommon or extinct, species of cingulates.
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Affiliation(s)
- Christian Thomas Heck
- Department of Anatomy and Cell Biology, Oklahoma State University Center for Health Sciences, Tulsa, Oklahoma, United States of America
| | - David J Varricchio
- Department of Earth Sciences, Montana State University, Bozeman, Montana, United States of America
| | - Timothy J Gaudin
- Department of Biology, Geology, and Environmental Science, University of Tennessee at Chattanooga, Chattanooga, Tennessee, United States of America
| | - Holly N Woodward
- Department of Anatomy and Cell Biology, Oklahoma State University Center for Health Sciences, Tulsa, Oklahoma, United States of America
| | - John R Horner
- Chapman University, Orange, California, United States of America
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237
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Cotts L, Amaral RV, Laeta M, Cunha-Filho CA, Moratelli R. Pathology in the appendicular bones of southern tamandua, Tamandua tetradactyla (Xenarthra, Pilosa): injuries to the locomotor system and first case report of osteomyelitis in anteaters. BMC Vet Res 2019; 15:120. [PMID: 31023313 PMCID: PMC6485120 DOI: 10.1186/s12917-019-1869-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2018] [Accepted: 04/12/2019] [Indexed: 11/30/2022] Open
Abstract
BACKGROUND The southern tamandua, Tamandua tetradactyla (Linnaeus, 1758), is the most common species of anteater. Even though much is known about its ecology, behavior, and parasites, there is very limited information about bone diseases in Tamandua and other anteaters. Here, we examined postcranial skeletons of 64 T. tetradactyla museum specimens covering most of the material available in Brazilian collections. RESULTS The following bone diseases were identified for the first time in Tamandua and other extant and fossil vermilinguans: osteophytes, osteitis, osteoarthritis, periostitis, exostoses, enthesopathies, and a severe chronic pyogenic osteomyelitis associated with fistulae, cloacae (pus), bone loss, and neoformation processes. Musculoskeletal reconstruction revealed that an old specimen was restricted to terrestrial locomotion due to osteopathological processes that impaired its climbing. CONCLUSIONS New osteopathological informations are presented for T. tetradactyla, favoring a better understanding of the expression of some bone diseases in wild animals. In addition, the diagnosis of these bone diseases in living anteaters provides useful information for studies on animal health and welfare, as well as contributing to the more effective recognition of paleodiseases in fossil xenarthrans.
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Affiliation(s)
- Leonardo Cotts
- Programa de Pós-graduação em Biodiversidade e Biologia Evolutiva da Universidade Federal do Rio de Janeiro (UFRJ), Instituto de Biologia, Centro de Ciências da Saúde (CCS), Interbloco B/C, Campus Ilha do Fundão, Av. Carlos Chagas Filho, 373, Cidade Universitária, Rio de Janeiro, RJ, Brazil.
- Fiocruz Mata Atlântica, Fundação Oswaldo Cruz (FIOCRUZ), Estrada Rodrigues Caldas, 3400 - Curicica, Rio de Janeiro, RJ, Brazil.
| | - Roberta V Amaral
- Departamento de Geologia e Paleontologia, Museu Nacional, Universidade Federal do Rio de Janeiro (UFRJ), Quinta da Boa Vista, S, Rio de Janeiro, RJ, /N, Brazil
| | - Maíra Laeta
- Programa de Pós-graduação em Biodiversidade e Biologia Evolutiva da Universidade Federal do Rio de Janeiro (UFRJ), Instituto de Biologia, Centro de Ciências da Saúde (CCS), Interbloco B/C, Campus Ilha do Fundão, Av. Carlos Chagas Filho, 373, Cidade Universitária, Rio de Janeiro, RJ, Brazil
- Departamento de Vertebrados, Setor de Mastozoologia, Museu Nacional, Universidade Federal do Rio de Janeiro (UFRJ), Quinta da Boa Vista, S/N, Rio de Janeiro, RJ, Brazil
- Grupo de Estudos de Mamíferos Marinhos da Região dos Lagos (GEMM-Lagos), Rio de Janeiro, RJ, Brazil
| | - Carlos A Cunha-Filho
- Programa de Pós-graduação em Ciências Ambientais e Conservação do Campus Macaé da Universidade Federal do Rio de Janeiro (UFRJ), Institute of Biodiversity and Sustainability at the Federal University of Rio de Janeiro (NUPEM/UFRJ), Av. São José Barreto, 764 - São José do Barreto, Macaé, RJ, Brazil
| | - Ricardo Moratelli
- Fiocruz Mata Atlântica, Fundação Oswaldo Cruz (FIOCRUZ), Estrada Rodrigues Caldas, 3400 - Curicica, Rio de Janeiro, RJ, Brazil
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238
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Navarro-Díaz A, Esteve-Altava B, Rasskin-Gutman D. Disconnecting bones within the jaw-otic network modules underlies mammalian middle ear evolution. J Anat 2019; 235:15-33. [PMID: 30977522 DOI: 10.1111/joa.12992] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/06/2019] [Indexed: 01/08/2023] Open
Abstract
The origin of the mammalian middle ear ossicles from the craniomandibular articulation of their synapsid ancestors is a key event in the evolution of vertebrates. The richness of the fossil record and the multitude of developmental studies have provided a stepwise reconstruction of this evolutionary innovation, highlighting the homology between the quadrate, articular, pre-articular and angular bones of early synapsids with the incus, malleus, gonial and ectotympanic bones of derived mammals, respectively. There are several aspects involved in this functional exaptation: (i) an increase of the masticatory musculature; (ii) the separation of the quadrate bone from the cranium; and (iii) the disconnection of the post-dentary bones from the dentary. Here, we compared the jaw-otic complex for 43 synapsid taxa using anatomical network analysis, showing that the disconnection of mandibular bones was a key step in the mammalian middle ear evolution, changing the skull anatomical modularity concomitant to the acquisition of new functions. Furthermore, our analysis allows the identification of three types of anatomical modules evolving through five evolutionary stages during the anatomical transformation of the jawbones into middle ear bones, with the ossification and degradation of Meckel's cartilage in mammals as the key ontogenetic event leading the change of anatomical modularity.
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Affiliation(s)
- Aitor Navarro-Díaz
- Paleobiology and Theoretical biology (Theoretical Biology), Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia, Valencia, Spain
| | - Borja Esteve-Altava
- Institute of Evolutionary Biology (UPF-CSIC), Department of Experimental and Health Sciences, University Pompeu Fabra, Barcelona, Spain
| | - Diego Rasskin-Gutman
- Paleobiology and Theoretical biology (Theoretical Biology), Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia, Valencia, Spain
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239
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Caccavo A, Weksler M. Mesial hyperdontia in Sigmodontinae (Rodentia: Cricetidae), with comments on the evolution of the anteroconid in Myomorpha. MAMMALIA 2019. [DOI: 10.1515/mammalia-2018-0162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Supernumerary teeth are common dental anomalies reported in rodents, mainly occurring distally to molars. We report the first case of mesial hyperdontia in wild-caught sigmodontine: a simplified tooth anterior to the right first lower molar in Neacomys amoenus. It affected the first molar morphology, which exhibits an underdeveloped mesial region with a reduced anterior conulid, a similar pattern observed in early known myomorph fossils, including lineages that still possess the last premolar. However, only lineages without premolar display an elongated first lower molar with a large anteroconid, as observed in extant Myomorpha. During the odontogenesis in myomorphs, the posteriormost vestigial diastemal tooth bud, located at the same locus of the last lower premolar, has its development arrested and merges with the cap of the first molar. This process might have contributed to the development of an increased anteroconid in this lineage. The abnormal Neacomys’ atavistic phenotype corroborates the hypothesis that the absorption of the primordium of the last lower premolar had played an important role in the development of first molar’s mesial region. Additionally, it also might have promoted the evolutionary transition from a reduced conulid into an enlarged anteroconid, as deduced from the fossil record and developmental evidence
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Affiliation(s)
- Aldo Caccavo
- Universidade Federal do Rio de Janeiro, Museu Nacional , Programa de Pós-Graduação em Zoologia , Rio de Janeiro, RJ 20940-040 , Brazil
- Universidade Federal do Rio de Janeiro, Museu Nacional , Departamento de Vertebrados, Setor de Mastozoologia , Rio de Janeiro, RJ 20940-040 , Brazil
| | - Marcelo Weksler
- Universidade Federal do Rio de Janeiro, Museu Nacional , Departamento de Vertebrados, Setor de Mastozoologia , Rio de Janeiro, RJ 20940-040 , Brazil
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240
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Carter AM. Hans Bluntschli in Berne: Researching reproduction in hedgehog tenrecs (Afrosoricida, Tenrecidae). J Morphol 2019; 280:841-848. [DOI: 10.1002/jmor.20988] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2019] [Revised: 03/20/2019] [Accepted: 03/21/2019] [Indexed: 12/30/2022]
Affiliation(s)
- Anthony M. Carter
- Cardiovascular and Renal ResearchInstitute of Molecular Medicine, University of Southern Denmark Odense Denmark
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241
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Six Impossible Things before Breakfast: Assumptions, Models, and Belief in Molecular Dating. Trends Ecol Evol 2019; 34:474-486. [PMID: 30904189 DOI: 10.1016/j.tree.2019.01.017] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2018] [Revised: 01/29/2019] [Accepted: 01/31/2019] [Indexed: 01/16/2023]
Abstract
Confidence in molecular dating analyses has grown with the increasing sophistication of the methods. Some problematic cases where molecular dates disagreed with paleontological estimates appear to have been resolved with a growing agreement between molecules and fossils. But we cannot relax just yet. The growing analytical sophistication of many molecular dating methods relies on an increasingly large number of assumptions about evolutionary history and processes. Many of these assumptions are based on statistical tractability rather than being informed by improved understanding of molecular evolution, yet changing the assumptions can influence molecular dates. How can we tell if the answers we get are driven more by the assumptions we make than by the molecular data being analyzed?
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242
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Halliday TJD, dos Reis M, Tamuri AU, Ferguson-Gow H, Yang Z, Goswami A. Rapid morphological evolution in placental mammals post-dates the origin of the crown group. Proc Biol Sci 2019; 286:20182418. [PMID: 30836875 PMCID: PMC6458320 DOI: 10.1098/rspb.2018.2418] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2018] [Accepted: 02/12/2019] [Indexed: 12/28/2022] Open
Abstract
Resolving the timing and pattern of early placental mammal evolution has been confounded by conflict among divergence date estimates from interpretation of the fossil record and from molecular-clock dating studies. Despite both fossil occurrences and molecular sequences favouring a Cretaceous origin for Placentalia, no unambiguous Cretaceous placental mammal has been discovered. Investigating the differing patterns of evolution in morphological and molecular data reveals a possible explanation for this conflict. Here, we quantified the relationship between morphological and molecular rates of evolution. We show that, independent of divergence dates, morphological rates of evolution were slow relative to molecular evolution during the initial divergence of Placentalia, but substantially increased during the origination of the extant orders. The rapid radiation of placentals into a highly morphologically disparate Cenozoic fauna is thus not associated with the origin of Placentalia, but post-dates superordinal origins. These findings predict that early members of major placental groups may not be easily distinguishable from one another or from stem eutherians on the basis of skeleto-dental morphology. This result supports a Late Cretaceous origin of crown placentals with an ordinal-level adaptive radiation in the early Paleocene, with the high relative rate permitting rapid anatomical change without requiring unreasonably fast molecular evolutionary rates. The lack of definitive Cretaceous placental mammals may be a result of morphological similarity among stem and early crown eutherians, providing an avenue for reconciling the fossil record with molecular divergence estimates for Placentalia.
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Affiliation(s)
- Thomas J. D. Halliday
- Department of Genetics, Evolution, and Environment, University College London, Gower Street, London WC1E 6BT, UK
- School of Geography, Earth, and Environmental Science, University of Birmingham, Edgbaston B15 2TT, UK
| | - Mario dos Reis
- School of Biological and Chemical Sciences, Queen Mary University London, Mile End Road, London E1 4NS, UK
| | - Asif U. Tamuri
- Research IT Services, University College London, Gower Street, London WC1E 6BT, UK
- European Molecular Biology Laboratory, European Bioinformatics, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK
| | - Henry Ferguson-Gow
- Department of Genetics, Evolution, and Environment, University College London, Gower Street, London WC1E 6BT, UK
| | - Ziheng Yang
- Department of Genetics, Evolution, and Environment, University College London, Gower Street, London WC1E 6BT, UK
| | - Anjali Goswami
- Department of Genetics, Evolution, and Environment, University College London, Gower Street, London WC1E 6BT, UK
- Department of Earth Sciences, University College London, Gower Street, London WC1E 6BT, UK
- Faculty of Life Sciences, Natural History Museum, Cromwell Road, London SW9 5DJ, UK
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243
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Ecological niche modelling does not support climatically-driven dinosaur diversity decline before the Cretaceous/Paleogene mass extinction. Nat Commun 2019; 10:1091. [PMID: 30842410 PMCID: PMC6403247 DOI: 10.1038/s41467-019-08997-2] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2018] [Accepted: 02/13/2019] [Indexed: 02/07/2023] Open
Abstract
In the lead-up to the Cretaceous/Paleogene mass extinction, dinosaur diversity is argued to have been either in long-term decline, or thriving until their sudden demise. The latest Cretaceous (Campanian-Maastrichtian [83-66 Ma]) of North America provides the best record to address this debate, but even here diversity reconstructions are biased by uneven sampling. Here we combine fossil occurrences with climatic and environmental modelling to quantify latest Cretaceous North American dinosaur habitat. Ecological niche modelling shows a Campanian-to-Maastrichtian habitability decrease in areas with present-day rock-outcrop. However, a continent-wide projection demonstrates habitat stability, or even a Campanian-to-Maastrichtian increase, that is not preserved. This reduction of the spatial sampling window resulted from formation of the proto-Rocky Mountains and sea-level regression. We suggest that Maastrichtian North American dinosaur diversity is therefore likely to be underestimated, with the apparent decline a product of sampling bias, and not due to a climatically-driven decrease in habitability as previously hypothesised.
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244
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Grunstra NDS, Zachos FE, Herdina AN, Fischer B, Pavličev M, Mitteroecker P. Humans as inverted bats: A comparative approach to the obstetric conundrum. Am J Hum Biol 2019; 31:e23227. [PMID: 30810261 PMCID: PMC6492174 DOI: 10.1002/ajhb.23227] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2018] [Revised: 02/03/2019] [Accepted: 02/06/2019] [Indexed: 01/19/2023] Open
Abstract
OBJECTIVES The narrow human birth canal evolved in response to multiple opposing selective forces on the pelvis. These factors cannot be sufficiently disentangled in humans because of the limited range of relevant variation. Here, we outline a comparative strategy to study the evolution of human childbirth and to test existing hypotheses in primates and other mammals. METHODS We combined a literature review with comparative analyses of neonatal and female body and brain mass, using three existing datasets. We also present images of bony pelves of a diverse sample of taxa. RESULTS Bats, certain non-human primates, seals, and most ungulates, including whales, have much larger relative neonatal masses than humans, and they all differ in their anatomical adaptations for childbirth. Bats, as a group, are particularly interesting in this context as they give birth to the relatively largest neonates, and their pelvis is highly dimorphic: Whereas males have a fused symphysis, a ligament bridges a large pubic gap in females. The resulting strong demands on the widened and vulnerable pelvic floor likely are relaxed by roosting head-down. CONCLUSIONS Parturition has constituted a strong selective force in many non-human placentals. We illustrated how the demands on pelvic morphology resulting from locomotion, pelvic floor stability, childbirth, and perhaps also erectile function in males have been traded off differently in mammals, depending on their locomotion and environment. Exploiting the power of a comparative approach, we present new hypotheses and research directions for resolving the obstetric conundrum in humans.
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Affiliation(s)
- Nicole D. S. Grunstra
- Department of Theoretical BiologyUniversity of ViennaViennaAustria
- Mammal CollectionNatural History Museum ViennaViennaAustria
| | - Frank E. Zachos
- Mammal CollectionNatural History Museum ViennaViennaAustria
- Department of Integrative ZoologyUniversity of ViennaViennaAustria
| | | | - Barbara Fischer
- Konrad Lorenz Institute for Evolution and Cognition ResearchKlosterneuburgAustria
| | - Mihaela Pavličev
- Cincinnati Children's Hospital Medical CenterCincinnatiOhio
- Department of PediatricsUniversity of Cincinnati College of MedicineCincinnatiOhio
- Department of PhilosophyUniversity of CincinnatiCincinnatiOhio
| | - Philipp Mitteroecker
- Department of Theoretical BiologyUniversity of ViennaViennaAustria
- Konrad Lorenz Institute for Evolution and Cognition ResearchKlosterneuburgAustria
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Youlatos D, Widayati KA, Tsuji Y. Foot postures and grasping of free-ranging Sunda colugos (Galeopterus variegatus) in West Java, Indonesia. Mamm Biol 2019. [DOI: 10.1016/j.mambio.2018.06.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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246
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Rolling of the jaw is essential for mammalian chewing and tribosphenic molar function. Nature 2019; 566:528-532. [DOI: 10.1038/s41586-019-0940-x] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2018] [Accepted: 01/18/2019] [Indexed: 11/08/2022]
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247
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Lin MK, Takahashi YS, Huo BX, Hanada M, Nagashima J, Hata J, Tolpygo AS, Ram K, Lee BC, Miller MI, Rosa MGP, Sasaki E, Iriki A, Okano H, Mitra P. A high-throughput neurohistological pipeline for brain-wide mesoscale connectivity mapping of the common marmoset. eLife 2019; 8:e40042. [PMID: 30720427 PMCID: PMC6384052 DOI: 10.7554/elife.40042] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Accepted: 02/04/2019] [Indexed: 11/13/2022] Open
Abstract
Understanding the connectivity architecture of entire vertebrate brains is a fundamental but difficult task. Here we present an integrated neuro-histological pipeline as well as a grid-based tracer injection strategy for systematic mesoscale connectivity mapping in the common marmoset (Callithrix jacchus). Individual brains are sectioned into ~1700 20 µm sections using the tape transfer technique, permitting high quality 3D reconstruction of a series of histochemical stains (Nissl, myelin) interleaved with tracer labeled sections. Systematic in-vivo MRI of the individual animals facilitates injection placement into reference-atlas defined anatomical compartments. Further, by combining the resulting 3D volumes, containing informative cytoarchitectonic markers, with in-vivo and ex-vivo MRI, and using an integrated computational pipeline, we are able to accurately map individual brains into a common reference atlas despite the significant individual variation. This approach will facilitate the systematic assembly of a mesoscale connectivity matrix together with unprecedented 3D reconstructions of brain-wide projection patterns in a primate brain.
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Affiliation(s)
- Meng Kuan Lin
- Laboratory for Marmoset Neural ArchitectureRIKEN Center for Brain ScienceWakoJapan
| | | | - Bing-Xing Huo
- Laboratory for Marmoset Neural ArchitectureRIKEN Center for Brain ScienceWakoJapan
| | - Mitsutoshi Hanada
- Laboratory for Marmoset Neural ArchitectureRIKEN Center for Brain ScienceWakoJapan
| | - Jaimi Nagashima
- Laboratory for Marmoset Neural ArchitectureRIKEN Center for Brain ScienceWakoJapan
| | - Junichi Hata
- Laboratory for Marmoset Neural ArchitectureRIKEN Center for Brain ScienceWakoJapan
| | | | | | - Brian C Lee
- Center for Imaging ScienceJohns Hopkins UniversityMarylandUnited States
| | - Michael I Miller
- Center for Imaging ScienceJohns Hopkins UniversityMarylandUnited States
| | - Marcello GP Rosa
- Department of Physiology and Biomedicine, Discovery InstituteMonash UniversityMelbourneAustralia
- Australian Research Council Centre of Excellence for Integrative Brain FunctionClaytonAustralia
| | - Erika Sasaki
- Central Institute for Experimental AnimalsKawasakiJapan
| | - Atsushi Iriki
- Laboratory for Symbolic Cognitive DevelopmentRIKEN Center for Brain ScienceWakoJapan
| | - Hideyuki Okano
- Laboratory for Marmoset Neural ArchitectureRIKEN Center for Brain ScienceWakoJapan
- Department of PhysiologyKeio University School of MedicineTokyoJapan
| | - Partha Mitra
- Laboratory for Marmoset Neural ArchitectureRIKEN Center for Brain ScienceWakoJapan
- Cold Spring Harbor LaboratoryCold Spring HarborUnited States
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248
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Jalovecka M, Sojka D, Ascencio M, Schnittger L. Babesia Life Cycle - When Phylogeny Meets Biology. Trends Parasitol 2019; 35:356-368. [PMID: 30733093 DOI: 10.1016/j.pt.2019.01.007] [Citation(s) in RCA: 132] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2018] [Revised: 01/11/2019] [Accepted: 01/14/2019] [Indexed: 10/27/2022]
Abstract
Although Babesia represents an important worldwide veterinary threat and an emerging risk to humans, this parasite has been poorly studied as compared to Plasmodium, its malaria-causing relative. In fact, Babesia employs highly specific survival strategies during its intraerythrocytic development and its intricate journey through the tick vector. This review introduces a substantially extended molecular phylogeny of the order Piroplasmida, challenging previous taxonomic classifications. The intriguing developmental proficiencies of Babesia are highlighted and compared with those of other haemoparasitic Apicomplexa. Molecular mechanisms associated with distinctive events in the Babesia life cycle are emphasized as potential targets for the development of Babesia-specific treatments.
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Affiliation(s)
- Marie Jalovecka
- Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, CZ-370 05 Ceske Budejovice, Czech Republic; Faculty of Science, University of South Bohemia, CZ-370 05 Ceske Budejovice, Czech Republic.
| | - Daniel Sojka
- Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, CZ-370 05 Ceske Budejovice, Czech Republic
| | - Mariano Ascencio
- Instituto de Patobiología Veterinaria, Centro de Investigaciones en Ciencias Veterinarias y Agronómicas (CICVyA), INTA-Castelar, Los Reseros y Nicolas Repetto s/n, Hurlingham 1686, Argentina; National Council of Scientific and Technological Research (CONICET), Ciudad Autónoma de Buenos Aires C1033AAJ, Argentina
| | - Leonhard Schnittger
- Instituto de Patobiología Veterinaria, Centro de Investigaciones en Ciencias Veterinarias y Agronómicas (CICVyA), INTA-Castelar, Los Reseros y Nicolas Repetto s/n, Hurlingham 1686, Argentina; National Council of Scientific and Technological Research (CONICET), Ciudad Autónoma de Buenos Aires C1033AAJ, Argentina
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249
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Attig J, Ule J. Genomic Accumulation of Retrotransposons Was Facilitated by Repressive RNA-Binding Proteins: A Hypothesis. Bioessays 2019; 41:e1800132. [DOI: 10.1002/bies.201800132] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2018] [Revised: 11/14/2018] [Indexed: 12/19/2022]
Affiliation(s)
- Jan Attig
- Dr. J. Attig, Prof. J. Ule; The Francis Crick Institute; 1 Midland Road London NW1 1AT UK
| | - Jernej Ule
- Dr. J. Attig, Prof. J. Ule; The Francis Crick Institute; 1 Midland Road London NW1 1AT UK
- Prof. J. Ule; Department of Molecular Neuroscience; UCL Institute of Neurology; Queen Square London WC1N 3BG UK
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250
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Caldas IV, Schrago CG. Data partitioning and correction for ascertainment bias reduce the uncertainty of placental mammal divergence times inferred from the morphological clock. Ecol Evol 2019; 9:2255-2262. [PMID: 30847109 PMCID: PMC6392387 DOI: 10.1002/ece3.4921] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Revised: 12/12/2018] [Accepted: 12/13/2018] [Indexed: 01/17/2023] Open
Abstract
Bayesian estimates of divergence times based on the molecular clock yield uncertainty of parameter estimates measured by the width of posterior distributions of node ages. For the relaxed molecular clock, previous works have reported that some of the uncertainty inherent to the variation of rates among lineages may be reduced by partitioning data. Here we test this effect for the purely morphological clock, using placental mammals as a case study. We applied the uncorrelated lognormal relaxed clock to morphological data of 40 extant mammalian taxa and 4,533 characters, taken from the largest published matrix of discrete phenotypic characters. The morphologically derived timescale was compared to divergence times inferred from molecular and combined data. We show that partitioning data into anatomical units significantly reduced the uncertainty of divergence time estimates for morphological data. For the first time, we demonstrate that ascertainment bias has an impact on the precision of morphological clock estimates. While analyses including molecular data suggested most divergences between placental orders occurred near the K-Pg boundary, the partitioned morphological clock recovered older interordinal splits and some younger intraordinal ones, including significantly later dates for the radiation of bats and rodents, which accord to the short-fuse hypothesis.
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Affiliation(s)
- Ian V. Caldas
- Department of GeneticsFederal University of Rio de JaneiroRio de JaneiroBrazil
| | - Carlos G. Schrago
- Department of GeneticsFederal University of Rio de JaneiroRio de JaneiroBrazil
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