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For: Li F, Li C, Chen Y, Liu J, Zhang C, Irving B, Fitzsimmons C, Plastow G, Guan LL. Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle. Microbiome 2019;7:92. [PMID: 31196178 PMCID: PMC6567441 DOI: 10.1186/s40168-019-0699-1] [Citation(s) in RCA: 253] [Impact Index Per Article: 42.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/09/2018] [Accepted: 05/19/2019] [Indexed: 05/27/2023]
Number Cited by Other Article(s)
201
Dai Q, Ma J, Cao G, Hu R, Zhu Y, Li G, Zou H, Wang Z, Peng Q, Xue B, Wang L. Comparative study of growth performance, nutrient digestibility, and ruminal and fecal bacterial community between yaks and cattle-yaks raised by stall-feeding. AMB Express 2021;11:98. [PMID: 34191139 PMCID: PMC8245608 DOI: 10.1186/s13568-021-01259-9] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2021] [Accepted: 06/17/2021] [Indexed: 12/22/2022]  Open
202
Kaplan-Shabtai V, Indugu N, Hennessy ML, Vecchiarelli B, Bender JS, Stefanovski D, De Assis Lage CF, Räisänen SE, Melgar A, Nedelkov K, Fetter ME, Fernandez A, Spitzer A, Hristov AN, Pitta DW. Using Structural Equation Modeling to Understand Interactions Between Bacterial and Archaeal Populations and Volatile Fatty Acid Proportions in the Rumen. Front Microbiol 2021;12:611951. [PMID: 34220728 PMCID: PMC8248675 DOI: 10.3389/fmicb.2021.611951] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Accepted: 05/12/2021] [Indexed: 01/01/2023]  Open
203
Wen C, Yan W, Mai C, Duan Z, Zheng J, Sun C, Yang N. Joint contributions of the gut microbiota and host genetics to feed efficiency in chickens. MICROBIOME 2021;9:126. [PMID: 34074340 PMCID: PMC8171024 DOI: 10.1186/s40168-021-01040-x] [Citation(s) in RCA: 87] [Impact Index Per Article: 21.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Accepted: 02/22/2021] [Indexed: 05/19/2023]
204
Daghio M, Ciucci F, Buccioni A, Cappucci A, Casarosa L, Serra A, Conte G, Viti C, McAmmond BM, Van Hamme JD, Mele M. Correlation of Breed, Growth Performance, and Rumen Microbiota in Two Rustic Cattle Breeds Reared Under Different Conditions. Front Microbiol 2021;12:652031. [PMID: 33995309 PMCID: PMC8117017 DOI: 10.3389/fmicb.2021.652031] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Accepted: 03/19/2021] [Indexed: 01/04/2023]  Open
205
Mavrommatis A, Sotirakoglou K, Skliros D, Flemetakis E, Tsiplakou E. Dose and time response of dietary supplementation with Schizochytrium sp. on the abundances of several microorganisms in the rumen liquid of dairy goats. Livest Sci 2021. [DOI: 10.1016/j.livsci.2021.104489] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
206
Islam M, Kim SH, Son AR, Ramos SC, Jeong CD, Yu Z, Kang SH, Cho YI, Lee SS, Cho KK, Lee SS. Seasonal Influence on Rumen Microbiota, Rumen Fermentation, and Enteric Methane Emissions of Holstein and Jersey Steers under the Same Total Mixed Ration. Animals (Basel) 2021;11:1184. [PMID: 33924248 PMCID: PMC8074768 DOI: 10.3390/ani11041184] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2021] [Revised: 04/16/2021] [Accepted: 04/17/2021] [Indexed: 01/16/2023]  Open
207
Evidence of a hormonal reshuffle in the cecal metabolome fingerprint of a strain of rats resistant to decompression sickness. Sci Rep 2021;11:8317. [PMID: 33859311 PMCID: PMC8050073 DOI: 10.1038/s41598-021-87952-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Accepted: 04/07/2021] [Indexed: 02/02/2023]  Open
208
Zhu Z, Difford GF, Noel SJ, Lassen J, Løvendahl P, Højberg O. Stability Assessment of the Rumen Bacterial and Archaeal Communities in Dairy Cows Within a Single Lactation and Its Association With Host Phenotype. Front Microbiol 2021;12:636223. [PMID: 33927700 PMCID: PMC8076905 DOI: 10.3389/fmicb.2021.636223] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Accepted: 02/28/2021] [Indexed: 01/09/2023]  Open
209
Sha Y, Hu J, Shi B, Dingkao R, Wang J, Li S, Zhang W, Luo Y, Liu X. Supplementary feeding of cattle-yak in the cold season alters rumen microbes, volatile fatty acids, and expression of SGLT1 in the rumen epithelium. PeerJ 2021;9:e11048. [PMID: 33777531 PMCID: PMC7982075 DOI: 10.7717/peerj.11048] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Accepted: 02/10/2021] [Indexed: 01/01/2023]  Open
210
Torres RNS, Paschoaloto JR, Ezequiel JMB, da Silva DAV, Almeida MTC. Meta-analysis of the effects of essential oil as an alternative to monensin in diets for beef cattle. Vet J 2021;272:105659. [PMID: 33941330 DOI: 10.1016/j.tvjl.2021.105659] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Revised: 03/15/2021] [Accepted: 03/19/2021] [Indexed: 01/10/2023]
211
Islam M, Kim SH, Ramos SC, Mamuad LL, Son AR, Yu Z, Lee SS, Cho YI, Lee SS. Holstein and Jersey Steers Differ in Rumen Microbiota and Enteric Methane Emissions Even Fed the Same Total Mixed Ration. Front Microbiol 2021;12:601061. [PMID: 33868186 PMCID: PMC8044996 DOI: 10.3389/fmicb.2021.601061] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Accepted: 02/15/2021] [Indexed: 12/17/2022]  Open
212
De La Guardia-Hidrogo VM, Paz HA. Influence of industry standard feeding frequencies on behavioral patterns and rumen and fecal bacterial communities in Holstein and Jersey cows. PLoS One 2021;16:e0248147. [PMID: 33667259 PMCID: PMC7935240 DOI: 10.1371/journal.pone.0248147] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Accepted: 02/22/2021] [Indexed: 01/02/2023]  Open
213
Huang S, Ji S, Suen G, Wang F, Li S. The Rumen Bacterial Community in Dairy Cows Is Correlated to Production Traits During Freshening Period. Front Microbiol 2021;12:630605. [PMID: 33746924 PMCID: PMC7969525 DOI: 10.3389/fmicb.2021.630605] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Accepted: 02/11/2021] [Indexed: 12/18/2022]  Open
214
Host genetics exerts lifelong effects upon hindgut microbiota and its association with bovine growth and immunity. ISME JOURNAL 2021;15:2306-2321. [PMID: 33649551 PMCID: PMC8319427 DOI: 10.1038/s41396-021-00925-x] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Revised: 01/26/2021] [Accepted: 02/03/2021] [Indexed: 12/22/2022]
215
Terry SA, Basarab JA, Guan LL, McAllister TA. Strategies to improve the efficiency of beef cattle production. CANADIAN JOURNAL OF ANIMAL SCIENCE 2021. [DOI: 10.1139/cjas-2020-0022] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
216
Manafiazar G, Flesch T, Baron V, McKeown L, Byron B, Block H, Ominski K, Plastow G, Basarab J. Methane and carbon dioxide emissions and grazed forage intake from pregnant beef heifers previously classified for residual feed intake under drylot conditions. CANADIAN JOURNAL OF ANIMAL SCIENCE 2021. [DOI: 10.1139/cjas-2019-0182] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
217
Aliakbari A, Zemb O, Billon Y, Barilly C, Ahn I, Riquet J, Gilbert H. Genetic relationships between feed efficiency and gut microbiome in pig lines selected for residual feed intake. J Anim Breed Genet 2021;138:491-507. [PMID: 33634901 PMCID: PMC8248129 DOI: 10.1111/jbg.12539] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2020] [Revised: 01/10/2021] [Accepted: 01/24/2021] [Indexed: 12/21/2022]
218
Xue MY, Xie YY, Zhong YF, Liu JX, Guan LL, Sun HZ. Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits. Anim Microbiome 2021;3:18. [PMID: 33568223 PMCID: PMC7877042 DOI: 10.1186/s42523-021-00081-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Accepted: 01/27/2021] [Indexed: 12/15/2022]  Open
219
Mizrahi I, Jami E. A method to the madness: Disentangling the individual forces that shape the rumen microbiome. EMBO Rep 2021;22:e52269. [PMID: 33528098 PMCID: PMC7857420 DOI: 10.15252/embr.202052269] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Accepted: 01/04/2021] [Indexed: 11/09/2022]  Open
220
Amin N, Seifert J. Dynamic progression of the calf's microbiome and its influence on host health. Comput Struct Biotechnol J 2021;19:989-1001. [PMID: 33613865 PMCID: PMC7868804 DOI: 10.1016/j.csbj.2021.01.035] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 01/20/2021] [Accepted: 01/20/2021] [Indexed: 02/07/2023]  Open
221
Palumbo F, Squartini A, Barcaccia G, Macolino S, Pornaro C, Pindo M, Sturaro E, Ramanzin M. A multi-kingdom metabarcoding study on cattle grazing Alpine pastures discloses intra-seasonal shifts in plant selection and faecal microbiota. Sci Rep 2021;11:889. [PMID: 33441587 PMCID: PMC7806629 DOI: 10.1038/s41598-020-79474-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Accepted: 12/09/2020] [Indexed: 12/15/2022]  Open
222
Kim HS, Whon TW, Sung H, Jeong YS, Jung ES, Shin NR, Hyun DW, Kim PS, Lee JY, Lee CH, Bae JW. Longitudinal evaluation of fecal microbiota transplantation for ameliorating calf diarrhea and improving growth performance. Nat Commun 2021;12:161. [PMID: 33420064 PMCID: PMC7794225 DOI: 10.1038/s41467-020-20389-5] [Citation(s) in RCA: 107] [Impact Index Per Article: 26.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Accepted: 12/01/2020] [Indexed: 12/26/2022]  Open
223
Palombo V, Pegolo S, Conte G, Cesarani A, Macciotta NPP, Stefanon B, Ajmone Marsan P, Mele M, Cecchinato A, D'Andrea M. Genomic prediction for latent variables related to milk fatty acid composition in Holstein, Simmental and Brown Swiss dairy cattle breeds. J Anim Breed Genet 2020;138:389-402. [PMID: 33331079 DOI: 10.1111/jbg.12532] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Revised: 11/27/2020] [Accepted: 12/02/2020] [Indexed: 12/19/2022]
224
Liu K, Zhang Y, Yu Z, Xu Q, Zheng N, Zhao S, Huang G, Wang J. Ruminal microbiota-host interaction and its effect on nutrient metabolism. ACTA ACUST UNITED AC 2020;7:49-55. [PMID: 33997331 PMCID: PMC8110878 DOI: 10.1016/j.aninu.2020.12.001] [Citation(s) in RCA: 85] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Revised: 09/21/2020] [Accepted: 12/02/2020] [Indexed: 12/13/2022]
225
Bai S, Zhang P, Lin M, Lin W, Yang Z, Li S. Microbial diversity and structure in the gastrointestinal tracts of two stranded short-finned pilot whales (Globicephala macrorhynchus) and a pygmy sperm whale (Kogia breviceps). Integr Zool 2020;16:324-335. [PMID: 33174288 PMCID: PMC9292824 DOI: 10.1111/1749-4877.12502] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
226
Brito LF, Oliveira HR, Houlahan K, Fonseca PA, Lam S, Butty AM, Seymour DJ, Vargas G, Chud TC, Silva FF, Baes CF, Cánovas A, Miglior F, Schenkel FS. Genetic mechanisms underlying feed utilization and implementation of genomic selection for improved feed efficiency in dairy cattle. CANADIAN JOURNAL OF ANIMAL SCIENCE 2020. [DOI: 10.1139/cjas-2019-0193] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
227
Aguilar-Marin SB, Betancur-Murillo CL, Isaza GA, Mesa H, Jovel J. Lower methane emissions were associated with higher abundance of ruminal Prevotella in a cohort of Colombian buffalos. BMC Microbiol 2020;20:364. [PMID: 33246412 PMCID: PMC7694292 DOI: 10.1186/s12866-020-02037-6] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 11/05/2020] [Indexed: 01/27/2023]  Open
228
Hassan FU, Arshad MA, Ebeid HM, Rehman MSU, Khan MS, Shahid S, Yang C. Phytogenic Additives Can Modulate Rumen Microbiome to Mediate Fermentation Kinetics and Methanogenesis Through Exploiting Diet-Microbe Interaction. Front Vet Sci 2020;7:575801. [PMID: 33263013 PMCID: PMC7688522 DOI: 10.3389/fvets.2020.575801] [Citation(s) in RCA: 58] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Accepted: 10/06/2020] [Indexed: 12/11/2022]  Open
229
Ross EM, Hayes BJ, Tucker D, Bond J, Denman SE, Oddy VH. Genomic predictions for enteric methane production are improved by metabolome and microbiome data in sheep (Ovis aries). J Anim Sci 2020;98:5894828. [PMID: 32815548 DOI: 10.1093/jas/skaa262] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Accepted: 08/12/2020] [Indexed: 12/31/2022]  Open
230
Mote RS, Filipov NM. Use of Integrative Interactomics for Improvement of Farm Animal Health and Welfare: An Example with Fescue Toxicosis. Toxins (Basel) 2020;12:toxins12100633. [PMID: 33019560 PMCID: PMC7600642 DOI: 10.3390/toxins12100633] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Revised: 09/18/2020] [Accepted: 09/24/2020] [Indexed: 02/07/2023]  Open
231
Wu D, Vinitchaikul P, Deng M, Zhang G, Sun L, Gou X, Mao H, Yang S. Host and altitude factors affect rumen bacteria in cattle. Braz J Microbiol 2020;51:1573-1583. [PMID: 32949385 DOI: 10.1007/s42770-020-00380-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 09/09/2020] [Indexed: 01/15/2023]  Open
232
Influence of host genetics in shaping the rumen bacterial community in beef cattle. Sci Rep 2020;10:15101. [PMID: 32934296 PMCID: PMC7493918 DOI: 10.1038/s41598-020-72011-9] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2020] [Accepted: 08/19/2020] [Indexed: 01/04/2023]  Open
233
Zhou A, Xie S, Sun D, Zhang P, Dong H, Zuo Z, Li X, Zou J. A First Insight into the Structural and Functional Comparison of Environmental Microbiota in Freshwater Turtle Chinemys reevesii at Different Growth Stages under Pond and Greenhouse Cultivation. Microorganisms 2020;8:E1277. [PMID: 32825672 PMCID: PMC7564371 DOI: 10.3390/microorganisms8091277] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Revised: 08/04/2020] [Accepted: 08/19/2020] [Indexed: 02/01/2023]  Open
234
Validating the Use of Bovine Buccal Sampling as a Proxy for the Rumen Microbiota by Using a Time Course and Random Forest Classification Approach. Appl Environ Microbiol 2020;86:AEM.00861-20. [PMID: 32591382 DOI: 10.1128/aem.00861-20] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2020] [Accepted: 06/13/2020] [Indexed: 02/01/2023]  Open
235
Quijada NM, Bodas R, Lorenzo JM, Schmitz-Esser S, Rodríguez-Lázaro D, Hernández M. Dietary Supplementation with Sugar Beet Fructooligosaccharides and Garlic Residues Promotes Growth of Beneficial Bacteria and Increases Weight Gain in Neonatal Lambs. Biomolecules 2020;10:E1179. [PMID: 32823755 PMCID: PMC7465112 DOI: 10.3390/biom10081179] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Revised: 08/04/2020] [Accepted: 08/08/2020] [Indexed: 11/25/2022]  Open
236
Bronzo V, Lopreiato V, Riva F, Amadori M, Curone G, Addis MF, Cremonesi P, Moroni P, Trevisi E, Castiglioni B. The Role of Innate Immune Response and Microbiome in Resilience of Dairy Cattle to Disease: The Mastitis Model. Animals (Basel) 2020;10:E1397. [PMID: 32796642 PMCID: PMC7459693 DOI: 10.3390/ani10081397] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Revised: 08/07/2020] [Accepted: 08/09/2020] [Indexed: 02/07/2023]  Open
237
Rumen metaproteomics: Closer to linking rumen microbial function to animal productivity traits. Methods 2020;186:42-51. [PMID: 32758682 DOI: 10.1016/j.ymeth.2020.07.011] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Revised: 06/12/2020] [Accepted: 07/27/2020] [Indexed: 12/28/2022]  Open
238
O'Hara E, Neves ALA, Song Y, Guan LL. The Role of the Gut Microbiome in Cattle Production and Health: Driver or Passenger? Annu Rev Anim Biosci 2020;8:199-220. [PMID: 32069435 DOI: 10.1146/annurev-animal-021419-083952] [Citation(s) in RCA: 140] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
239
Si J, Feng L, Gao J, Huang Y, Zhang G, Mo J, Zhu S, Qi W, Liang J, Lan G. Evaluating the association between feed efficiency and the fecal microbiota of early-life Duroc pigs using 16S rRNA sequencing. AMB Express 2020;10:115. [PMID: 32562009 PMCID: PMC7305293 DOI: 10.1186/s13568-020-01050-2] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Accepted: 06/12/2020] [Indexed: 12/19/2022]  Open
240
Hoque MN, Istiaq A, Clement RA, Gibson KM, Saha O, Islam OK, Abir RA, Sultana M, Siddiki AMAMZ, Crandall KA, Hossain MA. Insights Into the Resistome of Bovine Clinical Mastitis Microbiome, a Key Factor in Disease Complication. Front Microbiol 2020;11:860. [PMID: 32582039 PMCID: PMC7283587 DOI: 10.3389/fmicb.2020.00860] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2019] [Accepted: 04/09/2020] [Indexed: 12/23/2022]  Open
241
Lin D, Lacey EA, Bach BH, Bi K, Conroy CJ, Suvorov A, Bowie RCK. Gut microbial diversity across a contact zone for California voles: Implications for lineage divergence of hosts and mitonuclear mismatch in the assembly of the mammalian gut microbiome. Mol Ecol 2020;29:1873-1889. [PMID: 32282951 DOI: 10.1111/mec.15443] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2019] [Accepted: 03/27/2020] [Indexed: 12/29/2022]
242
Ahmad AA, Yang C, Zhang J, Kalwar Q, Liang Z, Li C, Du M, Yan P, Long R, Han J, Ding X. Effects of Dietary Energy Levels on Rumen Fermentation, Microbial Diversity, and Feed Efficiency of Yaks (Bos grunniens). Front Microbiol 2020;11:625. [PMID: 32670204 PMCID: PMC7326093 DOI: 10.3389/fmicb.2020.00625] [Citation(s) in RCA: 73] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2019] [Accepted: 03/19/2020] [Indexed: 01/21/2023]  Open
243
Xue MY, Sun HZ, Wu XH, Liu JX, Guan LL. Multi-omics reveals that the rumen microbiome and its metabolome together with the host metabolome contribute to individualized dairy cow performance. MICROBIOME 2020;8:64. [PMID: 32398126 PMCID: PMC7218573 DOI: 10.1186/s40168-020-00819-8] [Citation(s) in RCA: 242] [Impact Index Per Article: 48.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Accepted: 03/02/2020] [Indexed: 05/19/2023]
244
Bayesian modeling reveals host genetics associated with rumen microbiota jointly influence methane emission in dairy cows. ISME JOURNAL 2020;14:2019-2033. [PMID: 32366970 PMCID: PMC7368015 DOI: 10.1038/s41396-020-0663-x] [Citation(s) in RCA: 52] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Revised: 03/25/2020] [Accepted: 04/15/2020] [Indexed: 12/11/2022]
245
Gebreyesus G, Difford GF, Buitenhuis B, Lassen J, Noel SJ, Højberg O, Plichta DR, Zhu Z, Poulsen NA, Sundekilde UK, Løvendahl P, Sahana G. Predictive ability of host genetics and rumen microbiome for subclinical ketosis. J Dairy Sci 2020;103:4557-4569. [PMID: 32197852 DOI: 10.3168/jds.2019-17824] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Accepted: 01/28/2020] [Indexed: 12/27/2022]
246
Zhang Y, Li F, Chen Y, Wu H, Meng Q, Guan LL. Metatranscriptomic Profiling Reveals the Effect of Breed on Active Rumen Eukaryotic Composition in Beef Cattle With Varied Feed Efficiency. Front Microbiol 2020;11:367. [PMID: 32231647 PMCID: PMC7082318 DOI: 10.3389/fmicb.2020.00367] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2019] [Accepted: 02/19/2020] [Indexed: 01/09/2023]  Open
247
Prabhu VR, Wasimuddin, Kamalakkannan R, Arjun MS, Nagarajan M. Consequences of Domestication on Gut Microbiome: A Comparative Study Between Wild Gaur and Domestic Mithun. Front Microbiol 2020;11:133. [PMID: 32158434 PMCID: PMC7051944 DOI: 10.3389/fmicb.2020.00133] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2019] [Accepted: 01/21/2020] [Indexed: 12/12/2022]  Open
248
Ramayo‐Caldas Y, Zingaretti L, Popova M, Estellé J, Bernard A, Pons N, Bellot P, Mach N, Rau A, Roume H, Perez‐Enciso M, Faverdin P, Edouard N, Ehrlich D, Morgavi DP, Renand G. Identification of rumen microbial biomarkers linked to methane emission in Holstein dairy cows. J Anim Breed Genet 2020;137:49-59. [PMID: 31418488 PMCID: PMC6972549 DOI: 10.1111/jbg.12427] [Citation(s) in RCA: 54] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Revised: 07/12/2019] [Accepted: 07/13/2019] [Indexed: 12/29/2022]
249
Renand G, Vinet A, Decruyenaere V, Maupetit D, Dozias D. Methane and Carbon Dioxide Emission of Beef Heifers in Relation with Growth and Feed Efficiency. Animals (Basel) 2019;9:ani9121136. [PMID: 31842507 PMCID: PMC6940808 DOI: 10.3390/ani9121136] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Accepted: 12/09/2019] [Indexed: 12/23/2022]  Open
250
Lv X, Chai J, Diao Q, Huang W, Zhuang Y, Zhang N. The Signature Microbiota Drive Rumen Function Shifts in Goat Kids Introduced to Solid Diet Regimes. Microorganisms 2019;7:microorganisms7110516. [PMID: 31683646 PMCID: PMC6921049 DOI: 10.3390/microorganisms7110516] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2019] [Revised: 10/21/2019] [Accepted: 10/29/2019] [Indexed: 11/24/2022]  Open
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