Whistle variation in Mediterranean common bottlenose dolphin: The role of geographical, anthropogenic, social, and behavioral factors

Observational study on the non-linear response of dolphins to the presence of vessels

With the large increase in human marine activity, our seas have become populated with vessels that can be overheard from distances of even 20 km. Prior investigations showed that such a dense presence of vessels impacts the behaviour of marine animals, and in particular dolphins. While previous explorations were based on a linear observation for changes in the features of dolphin whistles, in this work we examine non-linear responses of bottlenose dolphins (Tursiops Truncatus) to the presence of vessels. We explored the response of dolphins to vessels by continuously recording acoustic data using two long-term acoustic recorders deployed near a shipping lane and a dolphin habitat in Eilat, Israel. Using deep learning methods we detected a large number of 50,000 whistles, which were clustered to associate whistle traces and to characterize their features to discriminate vocalizations of dolphins: both structure and quantities. Using a non-linear classifier, the whistles were categorized into two classes representing the presence or absence of a nearby vessel. Although our database does not show linear observable change in the features of the whistles, we obtained true positive and true negative rates exceeding 90% accuracy on separate, left-out test sets. We argue that this success in classification serves as a statistical proof for a non-linear response of dolphins to the presence of vessels.

Whistle repertoire and structure reflect ecotype distinction of pantropical spotted dolphins in the Eastern Tropical Pacific

The pantropical spotted dolphin in the Eastern Tropical Pacific (ETP) is found in two genetically and phenotypically diverged ecotypes, coastal and offshore. These habitats have distinct acoustic characteristics, which can lead to the evolution of distinct acoustic communication. Whistles are sounds widely used by dolphins to mediate species and individual recognition and social interactions. Here, we study the whistle acoustic structure and repertoire diversity of offshore and coastal pantropical spotted dolphins. Our results show that there is significantly more within- and across-group variation in whistle fundamental frequency between ecotypes than between offshore groups and between coastal groups. A Random Forest classification analysis performed with an accuracy of 83.99% and identified duration, peak and minimum frequency as the most informative variables for distinguishing between ecotypes. Overall, coastal spotted dolphins produced significantly shorter whistles that were significantly lower in frequency (peak, minimum and maximum, and start and end) than offshore dolphins. Ecotypes produced whistle repertoires that were similar in diversity, but different in contour composition, with the coastal ecotype producing more upsweep whistles than offshore dolphins. The results of this study suggest that acoustic adaptations to coastal and offshore environments could be important contributors to intraspecific variation of dolphin whistle repertoires.

J, Martínez-Aguilar S, Antichi S. Whistle characterization of long-beaked common dolphin (Delphinus delphis bairdii) in La Paz Bay, Gulf of California

Long-beaked common dolphin (Delphinus delphis bairdii) distribution is limited to the Eastern North Pacific Ocean. Its whistle repertoire is poorly investigated, with no studies in the Gulf of California. The aim of the present study is to characterize the whistles of this species and compare their parameters with different populations. Acoustic monitoring was conducted in La Paz Bay, Gulf of California. Recordings were inspected in spectrogram view in Raven Pro, selecting good quality whistles (n = 270). In the software Luscinia, contours were manually traced to obtain whistle frequencies and duration. Number of steps, inflection points and contour type were visually determined. We calculated the descriptive statistics of the selected whistle parameters and we compared the results with a dolphins population from the Eastern Pacific Ocean. Permutational multivariate analysis of variance (PERMANOVA) was performed to test the intraspecific variation of the whistle parameters among groups. In the present study the mean values (±SD) of the whistle parameters were: maximum frequency = 14.13 ± 3.71 kHz, minimum frequency = 8.44 ± 2.58 kHz and duration = 0.44 ± 0.31 s. Whistles with the upsweep contour were the most common ones (34.44%). The coefficient of variation (CV) values for modulation parameters were high (>100%), in accordance with other studies on dolphins. Whistle parameters showed significant differences among groups. Finally, ending and maximum frequencies, duration and inflection points of the whistles recorded in the present study were lower compared with the parameters of the long-beaked common dolphins from the Eastern Pacific Ocean. This study provides the first whistle characterization of long-beaked common dolphin from the Gulf of California and it will help future passive acoustic monitoring applications in the study area.

Robust unsupervised Tursiops aduncus whistle enhancement based on complete ensembled empirical optimal envelope local mean decomposition with adaptive noise

Whistle enhancement is an essential preprocessing step in studying dolphin behavior and population distributions. We propose a robust unsupervised whistle enhancement scheme based on improved local mean decomposition using adaptive noise estimation and logarithmic spectral amplitude. First, to further mitigate the mode aliasing problem effect in whistle signal decomposition and achieve better spectral separation of modes, we present a complete ensembled empirical optimal envelope local mean decomposition with adaptive noise algorithm. According to the envelope characteristics of the whistle signals, the proposed algorithm optimally and adaptively decomposes the noisy signal into product functions (PFs) with amplitude and frequency modulation. Second, the whistle enhancement framework consists of the improved minima-controlled recursive averaging for adaptive noise estimation, optimally modified log-spectral amplitude for each noisy product function enhancement, and the Hurst index for reconstructing pure whistle signal estimations with the least damaged PFs. Finally, the proposed scheme is applied to a dataset of long calls from two Tursiops aduncus individuals. After constructing the pure whistle dataset, the experimental results show that the proposed scheme performs better than other compared whistle enhancement schemes under different signal-to-noise ratios.

J, Martínez-Aguilar S, Viloria-Gómora L. Changes in whistle parameters of two common bottlenose dolphin ecotypes as a result of the physical presence of the research vessel

In the presence of vessels, dolphins have been found to change their habitat, behavior, group composition and whistle repertoire. The modification of the whistle parameters is generally considered to be a response to the engine noise. Little is known about the impact of the physical presence of vessels on dolphin acoustics. Whistle parameters of the coastal and oceanic ecotypes of common bottlenose dolphins in La Paz Bay, Mexico, were measured after the approach of the research vessel and its engine shutdown. Recordings of 10 min were made immediately after turning off the engine. For analysis, these recordings were divided from minute 0 to minute 5, and from minute 5:01 to minute 10. The whistles of the oceanic ecotype showed higher maximum, minimum and peak frequency in the second time interval compared to the first one. The whistle rate decreased in the second time interval. The whistles of the coastal ecotype showed no difference between the two time intervals. The physical presence of the research vessel could have induced a change in the whistle parameters of the oceanic dolphins until habituation to the vessel disturbance. The oceanic ecotype could increase the whistle rate and decrease the whistle frequencies to maintain acoustic contact more frequently and for longer distances. The coastal ecotype, showing no significant changes in the whistle parameters, could be more habituated to the presence of vessels and display a higher tolerance.

First Report of Epimeletic and Acoustic Behavior in Mediterranean Common Bottlenose Dolphins (Tursiops truncatus) Carrying Dead Calves

Simple Summary

Death-related behaviors have been often observed in cetaceans, frequently with a female caregiver (presumed mother) supporting a dead calf by carrying, lifting, or sinking it, generally accompanied by other escorting individuals. However, how cetaceans experience death and if their behavior could be compared to human grieving is still largely unknown, as well as their acoustic production in such contexts. This report describes two cases of an adult common bottlenose dolphin (Tursiops truncatus) supporting a dead newborn and associated acoustic behavior in the Tiber River estuary area (Rome, Mediterranean Sea, Italy). In both cases, a main supporter (putative mother) was observed interacting with the carcass of a newborn by lifting (case 1) and sinking it (case 2), always escorted by another adult individual. Several vocalizations were recorded, including a signature whistle (a tonal sound with a repeated, stereotyped, individual-specific frequency modulation pattern) in the first case, likely emitted by the putative mother to seek aid from other individuals. This result appears reasonable since bottlenose dolphins are a highly vocal species, that communicates mainly through acoustic signals. These observations confirm the occurrence of death-related supportive behavior in bottlenose dolphins and report a preliminary description of associated vocalizations, providing additional information on this largely unknown topic.

Abstract

Epimeletic behavior toward dead calves has been frequently reported in cetaceans, mostly with females (presumed mothers) showing supportive behaviors such as carrying, lifting, or sinking, often assisted by “escort” individuals. However, information on acoustic production in such contexts is scarce. This report describes two observations of epimeletic behavior toward dead newborns in bottlenose dolphins and associated acoustic production. Data were collected at the Tiber River estuary (Rome, Mediterranean Sea, Italy) with one hydrophone for passive acoustic monitoring and two digital cameras. In both cases, an individual (presumed mother) acting as the main supporter and directly interacting with the carcass by lifting it (case 1) or sinking it (case 2) was observed. Another adult individual (escort) was present in both encounters showing standing-by and excitement behaviors (case 1) and supportive behavior (case 2). In both encounters, whistles, pulsed sounds, and bray-call elements were recorded. The consistent vocal activity observed likely conveyed context-specific information. A signature whistle in the first encounter was also recorded, likely emitted by the putative mother as a distress call. This report confirms the occurrence of epimeletic behavior in bottlenose dolphins and reports a preliminary description of the acoustic production when a dead calf is involved, providing additional information on this largely unknown topic.

Marine soundscape and fish biophony of a Mediterranean marine protected area

BACKGROUND

Marine soundscape is the aggregation of sound sources known as geophony, biophony, and anthrophony. The soundscape analysis, in terms of collection and analysis of acoustic signals, has been proposed as a tool to evaluate the specific features of ecological assemblages and to estimate their acoustic variability over space and time. This study aimed to characterise the Capo Caccia-Isola Piana Marine Protected Area (Italy, Western Mediterranean Sea) soundscape over short temporal (few days) and spatial scales (few km) and to quantify the main anthropogenic and biological components, with a focus on fish biophonies.

METHODS

Within the MPA, three sites were chosen each in a different protection zone (A for the integral protection, B as the partial protection, and C as the general protection). In each site, two underwater autonomous acoustic recorders were deployed in July 2020 at a depth of about 10 m on rocky bottoms. To characterise the contribution of both biophonies and anthrophonies, sea ambient noise (SAN) levels were measured as sound pressure level (SPL dB re: 1 μ Pa-rms) at eight 1/3 octave bands, centred from 125 Hz to 16 kHz, and biological and anthropogenic sounds were noted. Fish sounds were classified and counted following a catalogue of known fish sounds from the Mediterranean Sea based on the acoustic characteristic of sound types. A contemporary fish visual census had been carried out at the test sites.

RESULTS

SPL were different by site, time (day vs. night), and hour. SPLs bands centred at 125, 250, and 500 Hz were significantly higher in the daytime, due to the high number of boats per minute whose noise dominated the soundscapes. The loudest man-made noise was found in the A zone, followed by the B and the C zone, confirming that MPA current regulations do not provide protection from acoustic pollution. The dominant biological components of the MPA soundscape were the impulsive sounds generated by some invertebrates, snapping shrimps and fish. The vast majority of fish sounds were recorded at the MPA site characterized by the highest sound richness, abundance, and Shannon-Wiener index, coherently with the results of a fish visual census. Moreover, the acoustic monitoring detected a sound associated with a cryptic species (Ophidion spp.) never reported in the study area before, further demonstrating the usefulness of passive acoustic monitoring as a complementary technique to species census. This study provides baseline data to detect future changes of the marine soundscapes and some suggestions to reduce the impact of noise on marine biodiversity.

Automated classification of tursiops aduncus whistles based on a depth-wise separable convolutional neural network and data augmentation

Whistle classification plays an essential role in studying the habitat and social behaviours of cetaceans. We obtained six categories of sweep whistles of two Tursiops aduncus individual signals using the passive acoustic mornitoring technique over a period of eight months in the Xiamen area. First, we propose a depthwise separable convolutional neural network for whistle classification. The proposed model adopts the depthwise convolution combined with the followed point-by-point convolution instead of the conventional convolution. As a result, it brings a better classification performance in sample sets with relatively independent features between different channels. Meanwhile, it leads to less computational complexity and fewer model parameters. Second, in order to solve the problem of an imbalance in the number of samples under each whistle category, we propose a random series method with five audio augmentation algorithms. The generalization ability of the trained model was improved by using an opening probability for each algorithm and the random selection of each augmentation factor within specific ranges. Finally, we explore the effect of the proposed augmentation method on the performance of our proposed architecture and find that it enhances the accuracy up to 98.53% for the classification of Tursiops aduncus whistles.

Birds of a feather speak together: Understanding the different dialects of animals can help to decipher their communication

As humans, many animal species that communicate via vocalization show a wide range of accents and dialects driven by environmental and social factors.

Dolphin whistles can be useful tools in identifying units of conservation

Background

Prioritizing groupings of organisms or ‘units’ below the species level is a critical issue for conservation purposes. Several techniques encompassing different time-frames, from genetics to ecological markers, have been considered to evaluate existing biological diversity at a sufficient temporal resolution to define conservation units. Given that acoustic signals are expressions of phenotypic diversity, their analysis may provide crucial information on current differentiation patterns within species. Here, we tested whether differences previously delineated within dolphin species based on i) geographic isolation, ii) genetics regardless isolation, and iii) habitat, regardless isolation and genetics, can be detected through acoustic monitoring. Recordings collected from 104 acoustic encounters of Stenella coeruleoalba, Delphinus delphis and Tursiops truncatus in the Azores, Canary Islands, the Alboran Sea and the Western Mediterranean basin between 1996 and 2012 were analyzed. The acoustic structure of communication signals was evaluated by analyzing parameters of whistles in relation to the known genetic and habitat-driven population structure.

Results

Recordings from the Atlantic and Mediterranean were accurately assigned to their respective basins of origin through Discriminant Function Analysis, with a minimum 83.8% and a maximum 93.8% classification rate. A parallel pattern between divergence in acoustic features and in the genetic and ecological traits within the basins was highlighted through Random Forest analysis. Although it is not yet possible to establish a causal link between each driver and acoustic differences between basins, we showed that signal variation reflects fine-scale diversity and may be used as a proxy for recognizing discrete units.

Conclusion

We recommend that acoustic analysis be included in assessments of delphinid population structure, together with genetics and ecological tracer analysis. This cost-efficient non-invasive method can be applied to uncover distinctiveness and local adaptation in other wide-ranging marine species.