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Miller T, Michoński G, Durlik I, Kozlovska P, Biczak P. Artificial Intelligence in Aquatic Biodiversity Research: A PRISMA-Based Systematic Review. BIOLOGY 2025; 14:520. [PMID: 40427709 PMCID: PMC12109572 DOI: 10.3390/biology14050520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/10/2025] [Revised: 04/30/2025] [Accepted: 05/06/2025] [Indexed: 05/29/2025]
Abstract
Freshwater ecosystems are increasingly threatened by climate change and anthropogenic activities, necessitating innovative and scalable monitoring solutions. Artificial intelligence (AI) has emerged as a transformative tool in aquatic biodiversity research, enabling automated species identification, predictive habitat modeling, and conservation planning. This systematic review follows the PRISMA framework to analyze AI applications in freshwater biodiversity studies. Using a structured literature search across Scopus, Web of Science, and Google Scholar, we identified 312 relevant studies published between 2010 and 2024. This review categorizes AI applications into species identification, habitat assessment, ecological risk evaluation, and conservation strategies. A risk of bias assessment was conducted using QUADAS-2 and RoB 2 frameworks, highlighting methodological challenges, such as measurement bias and inconsistencies in the model validation. The citation trends demonstrate exponential growth in AI-driven biodiversity research, with leading contributions from China, the United States, and India. Despite the growing use of AI in this field, this review also reveals several persistent challenges, including limited data availability, regional imbalances, and concerns related to model generalizability and transparency. Our findings underscore AI's potential in revolutionizing biodiversity monitoring but also emphasize the need for standardized methodologies, improved data integration, and interdisciplinary collaboration to enhance ecological insights and conservation efforts.
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Affiliation(s)
- Tymoteusz Miller
- Institute of Marine and Environmental Sciences, University of Szczecin, 71-415 Szczecin, Poland;
| | - Grzegorz Michoński
- Institute of Marine and Environmental Sciences, University of Szczecin, 71-415 Szczecin, Poland;
| | - Irmina Durlik
- Polish Society of Bioinformatics and Data Science, Biodata, 71-214 Szczecin, Poland; (I.D.); (P.B.)
- Faculty of Navigation, Maritime University of Szczecin, 70-500 Szczecin, Poland
| | - Polina Kozlovska
- Faculty of Economics, Finance and Management, University of Szczecin, 71-412 Szczecin, Poland;
| | - Paweł Biczak
- Polish Society of Bioinformatics and Data Science, Biodata, 71-214 Szczecin, Poland; (I.D.); (P.B.)
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2
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Hemraj DA, Carstensen J. Towards ecosystem-based techniques for tipping point detection. Biol Rev Camb Philos Soc 2025; 100:892-919. [PMID: 39564927 DOI: 10.1111/brv.13167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 11/08/2024] [Accepted: 11/08/2024] [Indexed: 11/21/2024]
Abstract
An ecosystem shifts to an alternative stable state when a threshold of accumulated pressure (i.e. direct impact of environmental change or human activities) is exceeded. Detecting this threshold in empirical data remains a challenge because ecosystems are governed by complex interlinkages and feedback loops between their components and pressures. In addition, multiple feedback mechanisms exist that can make an ecosystem resilient to state shifts. Therefore, unless a broad ecological perspective is used to detect state shifts, it remains questionable to what extent current detection methods really capture ecosystem state shifts and whether inferences made from smaller scale analyses can be implemented into ecosystem management. We reviewed the techniques currently used for retrospective detection of state shifts detection from empirical data. We show that most techniques are not suitable for taking a broad ecosystem perspective because approximately 85% do not combine intervariable non-linear relationships and high-dimensional data from multiple ecosystem variables, but rather tend to focus on one subsystem of the ecosystem. Thus, our perception of state shifts may be limited by methods that are often used on smaller data sets, unrepresentative of whole ecosystems. By reviewing the characteristics, advantages, and limitations of the current techniques, we identify methods that provide the potential to incorporate a broad ecosystem-based approach. We therefore provide perspectives into developing techniques better suited for detecting ecosystem state shifts that incorporate intervariable interactions and high-dimensionality data.
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Affiliation(s)
- Deevesh Ashley Hemraj
- Department of Ecoscience, Aarhus University, Frederiksborgvej 399, Roskilde, DK-4000, Denmark
| | - Jacob Carstensen
- Department of Ecoscience, Aarhus University, Frederiksborgvej 399, Roskilde, DK-4000, Denmark
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3
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Milligan MC, Coates PS, Brussee BE, O'Neil ST, Mathews SR, Espinosa SP, Miller K, Skalos D, Wiechman LA, Abele S, Boone J, Boatner K, Stone H, Casazza ML. Linking resource selection to population performance spatially to identify species' habitat across broad scales: An example of greater sage-grouse in a distinct population segment. Ecol Evol 2024; 14:e10891. [PMID: 39391817 PMCID: PMC11464893 DOI: 10.1002/ece3.10891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 11/30/2023] [Accepted: 12/16/2023] [Indexed: 10/12/2024] Open
Abstract
Management decisions often focus on the habitat selection of marked individuals without considering the contribution to demographic performance in selected habitats. Because habitat selection is not always adaptive, understanding the spatial relationship between habitat selection and demographic performance is critical to management decisions. Mapping both habitat selection and demographic performance for species of conservation concern can help guide population-scale conservation efforts. We demonstrate a quantitative approach to differentiate areas supporting selection and survival at large spatial extents. As a case study, we applied this approach to greater sage-grouse (Centrocercus urophasianus; hereafter, sage-grouse), an indicator species for sagebrush ecosystems. We evaluated both habitat selection and survival across multiple reproductive life stages (nesting, brood-rearing) in the Bi-State Distinct Population Segment, a genetically distinct and geographically isolated population of sage-grouse on the southwestern edge of the species' range. Our approach allowed us to identify both mismatches between selection and survival and trade-offs between reproductive life stages. These findings suggest resource demands vary across time, with predation risk being a dominant driver of habitat selection during nesting and early brood-rearing periods when chicks are smaller and flightless, whereas access to forage resources becomes more important during late brood rearing when resources become increasingly limited. Moving beyond identifying and managing habitat solely based on species occupancy or use by incorporating demographic measures allows managers to tailor actions to their specific goals; for example, protections of areas that support high selection and high survival and restoration actions focused on increasing survival in areas of high selection and low survival.
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Affiliation(s)
- Megan C. Milligan
- U.S. Geological SurveyWestern Ecological Research CenterDixonCaliforniaUSA
| | - Peter S. Coates
- U.S. Geological SurveyWestern Ecological Research CenterDixonCaliforniaUSA
| | - Brianne E. Brussee
- U.S. Geological SurveyWestern Ecological Research CenterDixonCaliforniaUSA
| | - Shawn T. O'Neil
- U.S. Geological SurveyWestern Ecological Research CenterDixonCaliforniaUSA
| | - Steven R. Mathews
- U.S. Geological SurveyWestern Ecological Research CenterDixonCaliforniaUSA
| | | | - Katherine Miller
- California Department of Fish and WildlifeSacramentoCaliforniaUSA
| | - Daniel Skalos
- California Department of Fish and WildlifeSacramentoCaliforniaUSA
| | - Lief A. Wiechman
- U.S. Geological SurveyFort Collins Science CenterFort CollinsColoradoUSA
| | | | - John Boone
- Great Basin Bird ObservatoryRenoNevadaUSA
| | | | | | - Michael L. Casazza
- U.S. Geological SurveyWestern Ecological Research CenterDixonCaliforniaUSA
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4
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Carlisle JD, Smith KT, Beck JL, Murphy MA, Chalfoun AD. Beyond overlap: Considering habitat preference and fitness outcomes in the umbrella species concept. Anim Conserv 2024; 27:212-225. [PMID: 38933688 PMCID: PMC11196921 DOI: 10.1111/acv.12899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Accepted: 07/20/2023] [Indexed: 06/28/2024]
Abstract
Umbrella species and other surrogate-species approaches to conservation provide an appealing framework to extend the reach of conservation efforts beyond single species. For the umbrella species concept to be effective, populations of multiple species of concern must persist in areas protected on behalf of the umbrella species. Most assessments of the concept, however, focus exclusively on geographic overlap among umbrella and background species, and not measures that affect population persistence (e.g., habitat quality or fitness). We quantified the congruence between the habitat preferences and nesting success of a high-profile umbrella species (greater sage-grouse, Centrocercus urophasianus, hereafter "sage-grouse"), and three sympatric species of declining songbirds (Brewer's sparrow Spizella breweri, sage thasher Oreoscoptes montanus, and vesper sparrow Pooecetes gramineus) in central Wyoming, USA during 2012 - 2013. We used machine-learning methods to create data-driven predictions of sage-grouse nest-site selection and nest survival probabilities by modeling field-collected sage-grouse data relative to habitat attributes. We then used field-collected songbird data to assess whether high-quality sites for songbirds aligned with those of sage-grouse. Nest sites selected by songbirds did not coincide with sage-grouse nesting preferences, with the exception that Brewer's sparrows preferred similar nest sites to sage-grouse in 2012. Moreover, the areas that produced higher rates of songbird nest survival were unrelated to those for sage-grouse. Our findings suggest that management actions at local scales that prioritize sage-grouse nesting habitat will not necessarily enhance the reproductive success of sagebrush-associated songbirds. Measures implemented to conserve sage-grouse and other purported umbrella species at broad spatial scales likely overlap the distribution of many species, however, broad-scale overlap may not translate to fine-scale conservation benefit beyond the umbrella species itself. The maintenance of microhabitat heterogeneity important for a diversity of species of concern will be critical for a more-holistic application of the umbrella species concept.
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Affiliation(s)
- J D Carlisle
- Wyoming Cooperative Fish and Wildlife Research Unit, Department of Zoology and Physiology, Program in Ecology, University of Wyoming, Laramie, WY, USA
- Science, Research, and Analytical Support Unit, Wyoming Game and Fish Department, Laramie, WY, USA
| | - K T Smith
- Department of Ecosystem Science and Management, Program in Ecology and Evolution, University of Wyoming, Laramie, WY, USA
| | - J L Beck
- Department of Ecosystem Science and Management, Program in Ecology and Evolution, University of Wyoming, Laramie, WY, USA
| | - M A Murphy
- Department of Ecosystem Science and Management, Program in Ecology and Evolution, University of Wyoming, Laramie, WY, USA
| | - A D Chalfoun
- U.S. Geological Survey Wyoming Cooperative Fish and Wildlife Research Unit, Department of Zoology and Physiology and Program in Ecology and Evolution, University of Wyoming, Laramie, WY, USA
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5
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Cross TB, Tack JD, Naugle DE, Schwartz MK, Doherty KE, Oyler-McCance SJ, Pritchert RD, Fedy BC. The ties that bind the sagebrush biome: integrating genetic connectivity into range-wide conservation of greater sage-grouse. ROYAL SOCIETY OPEN SCIENCE 2023; 10:220437. [PMID: 36844808 PMCID: PMC9943888 DOI: 10.1098/rsos.220437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Accepted: 01/31/2023] [Indexed: 06/18/2023]
Abstract
Conserving genetic connectivity is fundamental to species persistence, yet rarely is made actionable into spatial planning for imperilled species. Climate change and habitat degradation have added urgency to embrace connectivity into networks of protected areas. Our two-step process integrates a network model with a functional connectivity model, to identify population centres important to maintaining genetic connectivity then to delineate those pathways most likely to facilitate connectivity thereamong for the greater sage-grouse (Centrocercus urophasianus), a species of conservation concern ranging across eleven western US states and into two Canadian provinces. This replicable process yielded spatial action maps, able to be prioritized by importance to maintaining range-wide genetic connectivity. We used these maps to investigate the efficacy of 3.2 million ha designated as priority areas for conservation (PACs) to encompass functional connectivity. We discovered that PACs encompassed 41.1% of cumulative functional connectivity-twice the amount of connectivity as random-and disproportionately encompassed the highest-connectivity landscapes. Comparing spatial action maps to impedances to connectivity such as cultivation and woodland expansion allows both planning for future management and tracking outcomes from past efforts.
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Affiliation(s)
- Todd B. Cross
- School of Environment, Resources and Sustainability, University of Waterloo, Waterloo, Ontario, Canada
| | - Jason D. Tack
- Habitat and Population Evaluation Team, US Fish and Wildlife Service, 32 Campus Drive, Missoula, MT, USA
| | - David E. Naugle
- W.A. Franke College of Forestry and Conservation, University of Montana, Missoula, MT, USA
| | - Michael K. Schwartz
- USDA Forest Service, National Genomics Center for Wildlife and Fish Conservation, Rocky Mountain Research Station, 800 East Beckwith Avenue, Missoula, MT, USA
| | | | | | - Ronald D. Pritchert
- Habitat and Population Evaluation Team, US Fish and Wildlife Service, 3425 Miriam Avenue, Bismarck, ND, USA
| | - Bradley C. Fedy
- School of Environment, Resources and Sustainability, University of Waterloo, Waterloo, Ontario, Canada
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6
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Wann GT, Van Schmidt ND, Shyvers JE, Tarbox BC, McLachlan MM, O’Donnell MS, Titolo AJ, Coates PS, Edmunds DR, Heinrichs JA, Monroe AP, Aldridge CL. A regionally varying habitat model to inform management for greater sage-grouse persistence across their range. Glob Ecol Conserv 2022. [DOI: 10.1016/j.gecco.2022.e02349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
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7
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Monroe AP, Heinrichs JA, Whipple AL, O'Donnell MS, Edmunds DR, Aldridge CL. Spatial scale selection for informing species conservation in a changing landscape. Ecosphere 2022. [DOI: 10.1002/ecs2.4320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Affiliation(s)
- Adrian P. Monroe
- U.S. Geological Survey Fort Collins Science Center Fort Collins Colorado USA
| | - Julie A. Heinrichs
- Natural Resource Ecology Laboratory Colorado State University, in cooperation with the U.S. Geological Survey, Fort Collins Science Center Fort Collins Colorado USA
| | - Ashley L. Whipple
- U.S. Geological Survey Fort Collins Science Center Fort Collins Colorado USA
| | | | - David R. Edmunds
- U.S. Geological Survey Fort Collins Science Center Fort Collins Colorado USA
| | - Cameron L. Aldridge
- U.S. Geological Survey Fort Collins Science Center Fort Collins Colorado USA
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8
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Hennig JD, Scasta JD, Pratt AC, Wanner CP, Beck JL. Habitat selection and space use overlap between feral horses, pronghorn, and greater sage‐grouse in cold arid steppe. J Wildl Manage 2022. [DOI: 10.1002/jwmg.22329] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Jacob D. Hennig
- Department of Ecosystem Science and Management, University of Wyoming 1000 E. University Avenue Laramie WY 82071 USA
| | - J. D. Scasta
- Department of Ecosystem Science and Management, University of Wyoming 1000 E. University Avenue Laramie WY 82071 USA
| | - Aaron C. Pratt
- Department of Ecosystem Science and Management, University of Wyoming 1000 E. University Avenue Laramie WY 82071 USA
| | - Caitlyn P. Wanner
- Department of Ecosystem Science and Management, University of Wyoming 1000 E. University Avenue Laramie WY 82071 USA
| | - Jeffrey L. Beck
- Department of Ecosystem Science and Management, University of Wyoming 1000 E. University Avenue Laramie WY 82071 USA
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9
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O'Donnell MS, Edmunds DR, Aldridge CL, Heinrichs JA, Monroe AP, Coates PS, Prochazka BG, Hanser SE, Wiechman LA. Defining fine‐scaled population structure among continuously distributed populations. Methods Ecol Evol 2022. [DOI: 10.1111/2041-210x.13949] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
| | - David R. Edmunds
- U.S. Geological Survey Fort Collins Science Center Fort Collins Colorado USA
| | - Cameron L. Aldridge
- U.S. Geological Survey Fort Collins Science Center Fort Collins Colorado USA
| | - Julie A. Heinrichs
- Natural Resource Ecology Laboratory Colorado State University, Fort Collins, CO in cooperation with the U.S. Geological Survey, Fort Collins Science Center Fort Collins Colorado USA
| | - Adrian P. Monroe
- U.S. Geological Survey Fort Collins Science Center Fort Collins Colorado USA
| | - Peter S. Coates
- U.S. Geological Survey, Western Ecological Research Center Dixon Field Station Dixon California USA
| | - Brian G. Prochazka
- U.S. Geological Survey, Western Ecological Research Center Dixon Field Station Dixon California USA
| | - Steve E. Hanser
- U.S. Geological Survey Fort Collins Science Center Fort Collins Colorado USA
| | - Lief A. Wiechman
- U.S. Geological Survey Ecosystems Mission Area Fort Collins Colorado USA
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10
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Roth CL, O'Neil ST, Coates PS, Ricca MA, Pyke DA, Aldridge CL, Heinrichs JA, Espinosa SP, Delehanty DJ. Targeting Sagebrush (Artemisia Spp.) Restoration Following Wildfire with Greater Sage-Grouse (Centrocercus Urophasianus) Nest Selection and Survival Models. ENVIRONMENTAL MANAGEMENT 2022; 70:288-306. [PMID: 35687203 PMCID: PMC9252971 DOI: 10.1007/s00267-022-01649-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Accepted: 04/10/2022] [Indexed: 06/15/2023]
Abstract
Unprecedented conservation efforts for sagebrush (Artemisia spp.) ecosystems across the western United States have been catalyzed by risks from escalated wildfire activity that reduces habitat for sagebrush-obligate species such as Greater Sage-Grouse (Centrocercus urophasianus). However, post-fire restoration is challenged by spatial variation in ecosystem processes influencing resilience to disturbance and resistance to non-native invasive species, and spatial and temporal lags between slower sagebrush recovery processes and faster demographic responses of sage-grouse to loss of important habitat. Decision-support frameworks that account for these factors can help users strategically apply restoration efforts by predicting short and long-term ecological benefits of actions. Here, we developed a framework that strategically targets burned areas for restoration actions (e.g., seeding or planting sagebrush) that have the greatest potential to positively benefit sage-grouse populations through time. Specifically, we estimated sagebrush recovery following wildfire and risk of non-native annual grass invasion under four scenarios: passive recovery, grazing exclusion, active restoration with seeding, and active restoration with seedling transplants. We then applied spatial predictions of integrated nest site selection and survival models before wildfire, immediately following wildfire, and at 30 and 50 years post-wildfire based on each restoration scenario and measured changes in habitat. Application of this framework coupled with strategic planting designs aimed at developing patches of nesting habitat may help increase operational resilience for fire-impacted sagebrush ecosystems.
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Affiliation(s)
- Cali L Roth
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA, 95620, USA
| | - Shawn T O'Neil
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA, 95620, USA
| | - Peter S Coates
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA, 95620, USA.
| | - Mark A Ricca
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA, 95620, USA
| | - David A Pyke
- U.S. Geological Survey, Forest and Rangeland Ecosystem Science Center, 777 NW 9th Street, Suite 400, Corvallis, OR, 97330, USA
| | - Cameron L Aldridge
- U.S. Geological Survey, Fort Collins Science Center, 2150 Centre Avenue, Building C, Fort Collins, CO, 80526-8118, USA
| | - Julie A Heinrichs
- Natural Resource Ecology Laboratory, in cooperation with U.S. Geological Survey, Fort Collins Science Center, Colorado State University, 2150 Centre Avenue, Building C, Fort Collins, CO, 80526-8118, USA
| | - Shawn P Espinosa
- Nevada Department of Wildlife, 6980 Sierra Center Parkway #120, Reno, NV, 89511, USA
| | - David J Delehanty
- Department of Biological Sciences, Idaho State University, Pocatello, ID, USA
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11
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Beers AT, Frey SN. Greater sage‐grouse habitat selection varies across the marginal habitat of its lagging range margin. Ecosphere 2022. [DOI: 10.1002/ecs2.4146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Affiliation(s)
- Aidan T. Beers
- Department of Wildland Resources Utah State University Logan Utah USA
| | - Shandra N. Frey
- Department of Wildland Resources Utah State University Logan Utah USA
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12
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Walker BL. Resource selection by greater sage‐grouse varies by season and infrastructure type in a Colorado oil and gas field. Ecosphere 2022. [DOI: 10.1002/ecs2.4018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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13
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Row JR, Holloran MJ, Fedy BC. Quantifying the temporal stability in seasonal habitat for sage‐grouse using regression and ensemble tree approaches. Ecosphere 2022. [DOI: 10.1002/ecs2.4034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Affiliation(s)
- Jeffrey R. Row
- School of Environment, Resources and Sustainability University of Waterloo Waterloo Ontario Canada
| | | | - Bradley C. Fedy
- School of Environment, Resources and Sustainability University of Waterloo Waterloo Ontario Canada
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14
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Invasion of annual grasses following wildfire corresponds to maladaptive habitat selection by a sagebrush ecosystem indicator species. Glob Ecol Conserv 2022. [DOI: 10.1016/j.gecco.2022.e02147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
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15
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Chandler HC, Jenkins CL, Bauder JM. Accounting for geographic variation in species-habitat associations during habitat suitability modeling. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2022; 32:e2504. [PMID: 34866273 DOI: 10.1002/eap.2504] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 06/04/2021] [Indexed: 06/13/2023]
Abstract
Range-wide species conservation efforts are facilitated by spatially explicit estimates of habitat suitability. However, species-environment relationships often vary geographically and models assuming geographically constant relationships may result in misleading inferences. We present the first range-wide habitat suitability model (HSM) for the federally threatened eastern indigo snake (Drymarchon couperi) as a case study illustrating an approach to account for known latitudinal variation in habitat associations. Specifically, we modeled habitat suitability using interactive relationships between minimum winter temperature and several a priori environmental covariates and compared our results to those from models assuming geographically constant relationships. We found that multi-scale models including interactive effects with winter temperature outperformed single-scale models and models not including interactive effects with winter temperature. Our top-ranked model had suitable range-wide predictive performance and identified numerous large (i.e., ≥1000 ha) potential habitat patches throughout the indigo snake range. Predictive performance was greatest in southern Georgia and northern Florida likely reflecting more restrictive indigo snake habitat associations in these regions. This study illustrates how modeling interactive effects between temperature and environmental covariates can improve the performance of HSMs across geographically varying environmental gradients.
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Affiliation(s)
- Houston C Chandler
- The Orianne Society, Tiger, Georgia, USA
- Department of Fish and Wildlife Conservation, Virginia Tech, Blacksburg, Virginia, USA
| | | | - Javan M Bauder
- The Orianne Society, Tiger, Georgia, USA
- Illinois Natural History Survey, Prairie Research Institute, University of Illinois, Champaign, Illinois, USA
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16
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Scholtz R, Twidwell D. The last continuous grasslands on Earth: Identification and conservation importance. CONSERVATION SCIENCE AND PRACTICE 2022. [DOI: 10.1111/csp2.626] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Affiliation(s)
- Rheinhardt Scholtz
- Department of Agronomy and Horticulture University of Nebraska–Lincoln Lincoln Nebraska USA
| | - Dirac Twidwell
- Department of Agronomy and Horticulture University of Nebraska–Lincoln Lincoln Nebraska USA
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17
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The significance of region-specific habitat models as revealed by habitat shifts of grey-faced buzzard in response to different agricultural schedules. Sci Rep 2021; 11:22889. [PMID: 34819585 PMCID: PMC8613252 DOI: 10.1038/s41598-021-02315-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2021] [Accepted: 10/27/2021] [Indexed: 11/08/2022] Open
Abstract
To determine large scales habitat suitability for focal species, habitat models derived from one region are often extrapolated to others. However, extrapolation can be inappropriate due to regional variation of habitat selection. Accounting for the ecological mechanisms causing such variation is necessary to resolve this problem. We focused on grey-faced buzzards in agricultural landscapes of Japan, which show geographically different habitat selection. To determine whether this variation is caused by the difference in climatic conditions at geographical scales or the difference in agricultural practices at smaller regional scales, we surveyed distributions of buzzards and their major prey (frogs/orthopterans) in regions differing in rice-transplanting schedules within the same climatic zone. We found that buzzards preferred paddy-forest landscapes in the early transplanting regions, but grassland-forest landscapes in the late transplanting regions. Frogs were more abundant in the early transplanting regions due to flooded paddies, while the abundance of orthopterans did not differ. The regional variation in habitat selection of buzzards may be due to different prey availabilities caused by different agricultural schedules. We propose that habitat suitability assessments of organisms inhabiting agricultural landscapes should consider differences in production systems at regional scales and such regional partitioning is effective for accurate assessments.
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18
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Dinkins JB, Duchardt CJ, Hennig JD, Beck JL. Changes in hunting season regulations (1870s-2019) reduce harvest exposure on greater and Gunnison sage-grouse. PLoS One 2021; 16:e0253635. [PMID: 34610035 PMCID: PMC8491912 DOI: 10.1371/journal.pone.0253635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Accepted: 06/09/2021] [Indexed: 11/21/2022] Open
Abstract
Hunter harvest is a potential factor contributing to population declines of sage-grouse (Centrocercus spp.). As a result, wildlife agencies throughout western North America have set increasingly more conservative harvest regulations over the past 25 years to reduce or eliminate hunter success and concomitant numbers of harvested greater (C. urophasianus) and Gunnison (C. minimus) sage-grouse. Sage-grouse hunting has varied widely over time and space, which has made a comprehensive summary of hunting management challenging. We compiled data on harvest regulations among 11 western U.S. states and 2 Canadian provinces from 1870–2019 to create a timeline representative of hunting regulations. We compared annual harvest boundaries and area-weighted average hunting regulations, 1995–2018, relative to administrative boundaries and areas of high probability of sage-grouse occupation. We also summarized estimated numbers of birds harvested and hunters afield, 1995–2018, across both species’ ranges. From 1995–2018, there was a 30% reduction in administrative harvest boundaries across the greater sage-grouse range compared to a 16.6% reduction in area open to harvest within 8 km from active leks. Temporary closures occurred in response to wildfires, disease outbreaks, low population numbers, and two research projects; whereas, permanent closures primarily occurred in small populations and areas on the periphery of the species distribution. Similarly, area-weighted possession limits and season length for greater sage-grouse decreased 52.6% and 61.0%, respectively, while season start date stayed relatively stable (mean start date ~259 [mid-September]). In contrast, hunting of the now federally-threatened Gunnison sage-grouse ended after 1999. While restrictions in harvest regulations were large in area, closures near areas of high greater sage-grouse occupancy were relatively smaller with the same trend for Gunnison sage-grouse until hunting ceased. For greater sage-grouse, most states reduced bag and possession limits and appeared to adhere to recommendations for later and shorter hunting seasons, reducing potential for additive mortality.
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Affiliation(s)
- Jonathan B Dinkins
- Department of Animal and Rangeland Sciences, Oregon State University, Corvallis, Oregon, United States of America.,Department of Ecosystem Science and Management, University of Wyoming, Laramie, Wyoming, United States of America
| | - Courtney J Duchardt
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, Wyoming, United States of America
| | - Jacob D Hennig
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, Wyoming, United States of America
| | - Jeffrey L Beck
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, Wyoming, United States of America
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19
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Palmquist KA, Schlaepfer DR, Renne RR, Torbit SC, Doherty KE, Remington TE, Watson G, Bradford JB, Lauenroth WK. Divergent climate change effects on widespread dryland plant communities driven by climatic and ecohydrological gradients. GLOBAL CHANGE BIOLOGY 2021; 27:5169-5185. [PMID: 34189797 DOI: 10.1111/gcb.15776] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Accepted: 05/28/2021] [Indexed: 06/13/2023]
Abstract
Plant community response to climate change will be influenced by individual plant responses that emerge from competition for limiting resources that fluctuate through time and vary across space. Projecting these responses requires an approach that integrates environmental conditions and species interactions that result from future climatic variability. Dryland plant communities are being substantially affected by climate change because their structure and function are closely tied to precipitation and temperature, yet impacts vary substantially due to environmental heterogeneity, especially in topographically complex regions. Here, we quantified the effects of climate change on big sagebrush (Artemisia tridentata Nutt.) plant communities that span 76 million ha in the western United States. We used an individual-based plant simulation model that represents intra- and inter-specific competition for water availability, which is represented by a process-based soil water balance model. For dominant plant functional types, we quantified changes in biomass and characterized agreement among 52 future climate scenarios. We then used a multivariate matching algorithm to generate fine-scale interpolated surfaces of functional type biomass for our study area. Results suggest geographically divergent responses of big sagebrush to climate change (changes in biomass of -20% to +27%), declines in perennial C3 grass and perennial forb biomass in most sites, and widespread, consistent, and sometimes large increases in perennial C4 grasses. The largest declines in big sagebrush, perennial C3 grass and perennial forb biomass were simulated in warm, dry sites. In contrast, we simulated no change or increases in functional type biomass in cold, moist sites. There was high agreement among climate scenarios on climate change impacts to functional type biomass, except for big sagebrush. Collectively, these results suggest divergent responses to warming in moisture-limited versus temperature-limited sites and potential shifts in the relative importance of some of the dominant functional types that result from competition for limiting resources.
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Affiliation(s)
- Kyle A Palmquist
- Department of Biological Sciences, Marshall University, Huntington, WV, USA
| | - Daniel R Schlaepfer
- US Geological Survey, Southwest Biological Science Center, Flagstaff, AZ, USA
- Center for Adaptable Western Landscapes, Northern Arizona University, Flagstaff, AZ, USA
- School of Forestry and Environmental Studies, Yale University, New Haven, CT, USA
| | - Rachel R Renne
- US Geological Survey, Southwest Biological Science Center, Flagstaff, AZ, USA
- School of Forestry and Environmental Studies, Yale University, New Haven, CT, USA
| | - Stephen C Torbit
- US Fish and Wildlife Service, Mountain-Prairie Region, Lakewood, CO, USA
| | - Kevin E Doherty
- US Fish and Wildlife Service, Mountain-Prairie Region, Lakewood, CO, USA
| | | | - Greg Watson
- US Fish and Wildlife Service, Mountain-Prairie Region, Lakewood, CO, USA
| | - John B Bradford
- US Geological Survey, Southwest Biological Science Center, Flagstaff, AZ, USA
- Center for Adaptable Western Landscapes, Northern Arizona University, Flagstaff, AZ, USA
| | - William K Lauenroth
- School of Forestry and Environmental Studies, Yale University, New Haven, CT, USA
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20
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Dinkins JB, Lawson KJ, Beck JL. Influence of environmental change, harvest exposure, and human disturbance on population trends of greater sage-grouse. PLoS One 2021; 16:e0257198. [PMID: 34559848 PMCID: PMC8462709 DOI: 10.1371/journal.pone.0257198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2021] [Accepted: 08/25/2021] [Indexed: 11/29/2022] Open
Abstract
Hunter harvest of greater sage-grouse (Centrocercus urophasianus; hereafter “sage-grouse”) has been regulated by wildlife agencies during most of the past century. Hunting season regulations were maintained with the intention of providing sustainable hunting opportunities. Sage-grouse populations oscillate over time, and population growth can be influenced by seasonal weather and habitat disturbance. From 1995–2013, we compared sage-grouse lek trends from 22 relatively distinct sage-grouse population segments in 9 western U.S. states and 2 Canadian provinces. We stratified these populations into 3 broad categories (non-hunted [n = 8], continuously hunted [n = 10], and hunting season discontinued between 1996–2003 [n = 4]) with 8 different regulation histories to evaluate the potential impact of harvest on sage-grouse populations. Concomitantly, we assessed the effects of proportion burned, forested and cropland habitat; winter, spring, and summer precipitation; and human population, road, and oil and gas well densities on initial and time-varying lek counts. Density-dependent models fit lek trend data best for all regulation histories. In general, higher proportions of burnt, forested, and cropland habitat; and greater human population and oil and gas well densities were associated with lower equilibrium abundance (K). We found mixed results regarding the effect of hunting regulations on instantaneous growth rate (r). The cessation of harvest from 1996–2001 in approximately half of the largest sage-grouse population in our analysis was associated with higher r. Continuously harvested sage-grouse populations with permit hunting seasons had higher r during years with higher proportion of area exposed to permitted hunting rather than general upland game seasons. However, more liberal hunting regulations were positively associated with higher r in populations continuously harvested under general upland game hunts. Our results suggest that discontinuing harvest in the largest population resulted in greater population growth rates; however, this was not consistently the case for smaller populations. To no surprise, not all sage-grouse populations were influenced by the same environmental change or human disturbance factors. Our results will assist managers to understand factors associated with K, which provides the best targets for conservation efforts.
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Affiliation(s)
- Jonathan B. Dinkins
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, Wyoming, United States of America
- Department of Animal and Rangeland Sciences, Oregon State University, Corvallis, Oregon, United States of America
- * E-mail:
| | - Kirstie J. Lawson
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, Wyoming, United States of America
| | - Jeffrey L. Beck
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, Wyoming, United States of America
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21
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Doherty KE, Boyd CS, Kerby JD, Sitz AL, Foster LJ, Cahill MC, Johnson DD, Sparklin BD. Threat‐Based State and Transition Models Predict Sage‐Grouse Occurrence while Promoting Landscape Conservation. WILDLIFE SOC B 2021. [DOI: 10.1002/wsb.1200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
| | - Chad S. Boyd
- USDA Agricultural Research Service & Eastern Oregon Agricultural Research Center Burns OR 97720 USA
| | | | - Angela L. Sitz
- United States Fish and Wildlife Service Bend OR 97701 USA
| | - Lee J. Foster
- Oregon Department of Fish and Wildlife Hines OR 97738 USA
| | | | - Dustin D. Johnson
- Oregon State University & Eastern Oregon Agricultural Research Center Burns OR 97720 USA
| | - Bill D. Sparklin
- United States Fish and Wildlife Service Great Falls MT 59404 USA
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22
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Coates PS, O'neil ST, MuÑoz DA, Dwight IA, Tull JC. Sage‐Grouse Population Dynamics are Adversely Affected by Overabundant Feral Horses. J Wildl Manage 2021. [DOI: 10.1002/jwmg.22089] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Peter S. Coates
- U.S. Geological Survey Western Ecological Research Center Dixon Field Station, 800 Business Park Road Dixon CA 95620 USA
| | - Shawn T. O'neil
- U.S. Geological Survey Western Ecological Research Center Dixon Field Station, 800 Business Park Road Dixon CA 95620 USA
| | - Diana A. MuÑoz
- U.S. Geological Survey Western Ecological Research Center Dixon Field Station, 800 Business Park Road Dixon CA 95620 USA
| | - Ian A. Dwight
- U.S. Geological Survey Western Ecological Research Center Dixon Field Station, 800 Business Park Road Dixon CA 95620 USA
| | - John C. Tull
- U.S. Fish and Wildlife Service Science Applications, Pacific Southwest Region 1340 Financial Boulevard Reno NV 89502 USA
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Lazenby KD, Coates PS, O’Neil ST, Kohl MT, Dahlgren DK. Nesting, brood rearing, and summer habitat selection by translocated greater sage-grouse in North Dakota, USA. Ecol Evol 2021; 11:2741-2760. [PMID: 33767833 PMCID: PMC7981223 DOI: 10.1002/ece3.7228] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Revised: 10/15/2020] [Accepted: 11/17/2020] [Indexed: 11/16/2022] Open
Abstract
Human enterprise has led to large-scale changes in landscapes and altered wildlife population distribution and abundance, necessitating efficient and effective conservation strategies for impacted species. Greater sage-grouse (Centrocercus urophasianus; hereafter sage-grouse) are a widespread sagebrush (Artemisia spp.) obligate species that has experienced population declines since the mid-1900s resulting from habitat loss and expansion of anthropogenic features into sagebrush ecosystems. Habitat loss is especially evident in North Dakota, USA, on the northeastern fringe of sage-grouse' distribution, where a remnant population remains despite recent development of energy-related infrastructure. Resource managers in this region have determined a need to augment sage-grouse populations using translocation techniques that can be important management tools for countering species decline from range contraction. Although translocations are a common tool for wildlife management, very little research has evaluated habitat following translocation, to track individual behaviors such as habitat selection and fidelity to the release site, which can help inform habitat requirements to guide selection of future release sites. We provide an example where locations from previously released radio-marked sage-grouse are used in a resource selection function framework to evaluate habitat selection following translocation and identify areas of seasonal habitat to inform habitat management and potential restoration needs. We also evaluated possible changes in seasonal habitat since the late 1980s using spatial data provided by the Rangeland Analysis Platform coupled with resource selection modeling results. Our results serve as critical baseline information for habitat used by translocated individuals across life stages in this study area, and will inform future evaluations of population performance and potential for long-term recovery.
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Affiliation(s)
- Kade D. Lazenby
- Department of Wildland ResourcesJack H. Berryman InstituteS. J. Quinney College of Natural ResourcesUtah State UniversityLoganUTUSA
| | - Peter S. Coates
- Western Ecological Research CenterDixon Field StationU.S. Geological SurveyDixonCAUSA
| | - Shawn T. O’Neil
- Western Ecological Research CenterDixon Field StationU.S. Geological SurveyDixonCAUSA
| | - Michel T. Kohl
- Department of Wildland ResourcesJack H. Berryman InstituteS. J. Quinney College of Natural ResourcesUtah State UniversityLoganUTUSA
| | - David K. Dahlgren
- Department of Wildland ResourcesJack H. Berryman InstituteS. J. Quinney College of Natural ResourcesUtah State UniversityLoganUTUSA
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24
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Picardi S, Messmer T, Crabb B, Kohl M, Dahlgren D, Frey N, Larsen R, Baxter R. Predicting greater sage-grouse habitat selection at the southern periphery of their range. Ecol Evol 2020; 10:13451-13463. [PMID: 33304551 PMCID: PMC7713982 DOI: 10.1002/ece3.6950] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Revised: 09/25/2020] [Accepted: 10/02/2020] [Indexed: 11/10/2022] Open
Abstract
Mapping suitable habitat is an important process in wildlife conservation planning. Species distribution reflects habitat selection processes occurring across multiple spatio-temporal scales. Because habitat selection may be driven by different factors at different scales, conservation planners require information at the scale of the intervention to plan effective management actions. Previous research has described habitat selection processes shaping the distribution of greater sage-grouse (Centrocercus urophasianus; sage-grouse) at the range-wide scale. Finer-scale information for applications within jurisdictional units inside the species range is lacking, yet necessary, because state wildlife agencies are the management authority for sage-grouse in the United States. We quantified seasonal second-order habitat selection for sage-grouse across the state of Utah to produce spatio-temporal predictions of their distribution at the southern periphery of the species range. We used location data obtained from sage-grouse marked with very-high-frequency radio-transmitters and lek location data collected between 1998 and 2013 to quantify species habitat selection in relation to a suite of topographic, edaphic, climatic, and anthropogenic variables using random forest algorithms. Sage-grouse selected for greater sagebrush (Artemisia spp.) cover, higher elevations, and gentler slopes and avoided lower precipitations and higher temperatures. The strength of responses to habitat variables varied across seasons. Anthropogenic variables previously reported as affecting their range-wide distribution (i.e., roads, powerlines, communication towers, and agricultural development) were not ranked as top predictors at our focal scale. Other than strong selection for sagebrush cover, the responses we observed differed from what has been reported at the range-wide scale. These differences likely reflect the unique climatic, geographic, and topographic context found in the southern peripheral area of the species distribution compared to range-wide environmental gradients. Our results highlight the importance of considering appropriateness of scale when planning conservation actions for wide-ranging species.
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Affiliation(s)
- Simona Picardi
- Jack H. Berryman Institute, Department of Wildland ResourcesUtah State UniversityLoganUTUSA
| | - Terry Messmer
- Jack H. Berryman Institute, Department of Wildland ResourcesUtah State UniversityLoganUTUSA
| | - Ben Crabb
- Jack H. Berryman Institute, Department of Wildland ResourcesUtah State UniversityLoganUTUSA
| | - Michel Kohl
- Warnell School of Forestry and Natural ResourcesUniversity of GeorgiaAthensGAUSA
| | - David Dahlgren
- Jack H. Berryman Institute, Department of Wildland ResourcesUtah State UniversityLoganUTUSA
| | - Nicki Frey
- Jack H. Berryman Institute, Department of Wildland ResourcesUtah State UniversityLoganUTUSA
| | - Randy Larsen
- Department of Plant and Wildlife SciencesBrigham Young UniversityProvoUTUSA
| | - Rick Baxter
- Department of Plant and Wildlife SciencesBrigham Young UniversityProvoUTUSA
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25
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O’Neil ST, Coates PS, Brussee BE, Ricca MA, Espinosa SP, Gardner SC, Delehanty DJ. Wildfire and the ecological niche: Diminishing habitat suitability for an indicator species within semi-arid ecosystems. GLOBAL CHANGE BIOLOGY 2020; 26:6296-6312. [PMID: 32741106 PMCID: PMC7693117 DOI: 10.1111/gcb.15300] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2020] [Accepted: 06/05/2020] [Indexed: 05/23/2023]
Abstract
Globally accelerating frequency and extent of wildfire threatens the persistence of specialist wildlife species through direct loss of habitat and indirect facilitation of exotic invasive species. Habitat specialists may be especially prone to rapidly changing environmental conditions because their ability to adapt lags behind the rate of habitat alteration. As a result, these populations may become increasingly susceptible to ecological traps by returning to suboptimal breeding habitats that were dramatically altered by disturbance. We demonstrate a multistage modeling approach that integrates habitat selection and survival during the key nesting life-stage of a bird species of high conservation concern, the greater sage-grouse (Centrocercus urophasianus; hereafter, sage-grouse). We applied these spatially explicit models to a spatiotemporally robust dataset of sage-grouse nest locations and fates across wildfire-altered sagebrush ecosystems of the Great Basin ecoregion, western United States. Female sage-grouse exhibited intricate habitat selection patterns that varied across regional gradients of ecological productivity among sagebrush communities, but often selected nest sites that disproportionately resulted in nest failure. For example, 23% of nests occurred in wildfire-affected habitats characterized by reduced sagebrush cover and greater composition of invasive annual grasses. We found survival of nests was negatively associated with wildfire-affected areas, but positively associated with higher elevations with increased ruggedness and overall shrub cover. Strong site fidelity likely drove sage-grouse to continue nesting in habitats degraded by wildfire. Hence, increasing frequency and extent of wildfire may contribute disproportionately to reduced reproductive success by creating ecological traps that act as population sinks. Identifying such habitat mismatches between selection and survival facilitates deeper understanding of the mechanisms driving reduced geographic niche space and population decline at broad spatiotemporal scales, while guiding management actions to areas that would be most beneficial to the species.
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Affiliation(s)
- Shawn T. O’Neil
- Western Ecological Research CenterU.S. Geological SurveyDixonCAUSA
| | - Peter S. Coates
- Western Ecological Research CenterU.S. Geological SurveyDixonCAUSA
| | | | - Mark A. Ricca
- Western Ecological Research CenterU.S. Geological SurveyDixonCAUSA
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26
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Pyke DA, Shriver RK, Arkle RS, Pilliod DS, Aldridge CL, Coates PS, Germino MJ, Heinrichs JA, Ricca MA, Shaff SE. Postfire growth of seeded and planted big sagebrush—strategic designs for restoring greater sage‐grouse nesting habitat. Restor Ecol 2020. [DOI: 10.1111/rec.13264] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- David A. Pyke
- U.S. Geological Survey, Forest and Rangeland Ecosystem Science Center 3200 SW Jefferson Way Corvallis OR 97331 USA
| | - Robert K. Shriver
- U.S. Geological Survey, Southwest Biological Science Center 2255 N Gemini Road Flagstaff AZ 86001 USA
- University of Nevada Reno, Department of Natural Resources & Environmental Science, 1664 N. Virginia St Reno NV 89557 USA
| | - Robert S. Arkle
- U.S. Geological Survey, Forest and Rangeland Ecosystem Science Center 970 S Lusk St Boise ID 83706 USA
| | - David S. Pilliod
- U.S. Geological Survey, Forest and Rangeland Ecosystem Science Center 970 S Lusk St Boise ID 83706 USA
| | - Cameron L. Aldridge
- U.S. Geological Survey, Fort Collins Science Center 2150 Centre Avenue, Building C Fort Collins CO 80526‐8118 USA
| | - Peter S. Coates
- U.S. Geological Survey, Western Ecological Research Center Dixon Field Station, 800 Business Park Drive, Suite D Dixon CA 95620 USA
| | - Matthew J. Germino
- U.S. Geological Survey, Forest and Rangeland Ecosystem Science Center 970 S Lusk St Boise ID 83706 USA
| | - Julie A. Heinrichs
- Natural Resource Ecology Laboratory, Colorado State University; in cooperation with U.S. Geological Survey, Fort Collins Science Center 2150 Centre Avenue, Building C Fort Collins CO 80526‐8118 USA
| | - Mark A. Ricca
- U.S. Geological Survey, Western Ecological Research Center Dixon Field Station, 800 Business Park Drive, Suite D Dixon CA 95620 USA
| | - Scott E. Shaff
- U.S. Geological Survey, Forest and Rangeland Ecosystem Science Center 3200 SW Jefferson Way Corvallis OR 97331 USA
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27
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Duchardt CJ, Augustine DJ, Beck JL. Anthropogenic and Natural Disturbance Differentially Affect Sagebrush Bird Habitat Use. J Wildl Manage 2020. [DOI: 10.1002/jwmg.21907] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Courtney J. Duchardt
- Department of Ecosystem Science and Management and Program in Ecology University of Wyoming 1000 E University Avenue Laramie WY 82070 USA
| | - David J. Augustine
- USDA‐ARS Rangeland Resources and Systems Research Unit 1701 Centre Avenue Fort Collins CO 80526 USA
| | - Jeffrey L. Beck
- Department of Ecosystem Science and Management and Program in Ecology University of Wyoming 1000 E University Avenue Laramie WY 82070 USA
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28
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Kirol CP, Smith KT, Graf NE, Dinkins JB, Lebeau CW, Maechtle TL, Sutphin AL, Beck JL. Greater Sage‐Grouse Response to the Physical Footprint of Energy Development. J Wildl Manage 2020. [DOI: 10.1002/jwmg.21854] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Christopher P. Kirol
- Department of Ecosystem Science and Management University of Wyoming Laramie WY 82071 USA
| | - Kurt T. Smith
- Department of Ecosystem Science and Management University of Wyoming Laramie WY 82071 USA
| | - Nicholas E. Graf
- Wyoming Geographic Information Science Center University of Wyoming Laramie WY 82071 USA
| | - Jonathan B. Dinkins
- Department of Ecosystem Science and Management University of Wyoming Laramie WY 82071 USA
| | - Chad W. Lebeau
- Western EcoSystems Technology, Inc. 200 South 2nd St., Suite B Laramie WY 82070 USA
| | | | - Andrew L. Sutphin
- Big Horn Environmental Consultants 730 E. Burkitt Sheridan WY 82801 USA
| | - Jeffrey L. Beck
- Department of Ecosystem Science and Management University of Wyoming Laramie WY 82071 USA
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29
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Ricca MA, Coates PS. Integrating Ecosystem Resilience and Resistance Into Decision Support Tools for Multi-Scale Population Management of a Sagebrush Indicator Species. Front Ecol Evol 2020. [DOI: 10.3389/fevo.2019.00493] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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30
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Coates PS, Brussee BE, Ricca MA, Severson JP, Casazza ML, Gustafson KB, Espinosa SP, Gardner SC, Delehanty DJ. Spatially explicit models of seasonal habitat for greater sage-grouse at broad spatial scales: Informing areas for management in Nevada and northeastern California. Ecol Evol 2020; 10:104-118. [PMID: 31993115 PMCID: PMC6972839 DOI: 10.1002/ece3.5842] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2018] [Revised: 04/01/2019] [Accepted: 05/11/2019] [Indexed: 11/30/2022] Open
Abstract
Defining boundaries of species' habitat across broad spatial scales is often necessary for management decisions, and yet challenging for species that demonstrate differential variation in seasonal habitat use. Spatially explicit indices that incorporate temporal shifts in selection can help overcome such challenges, especially for species of high conservation concern. Greater sage-grouse Centrocercus urophasianus (hereafter, sage-grouse), a sagebrush obligate species inhabiting the American West, represents an important case study because sage-grouse exhibit seasonal habitat patterns, populations are declining in most portions of their range and are central to contemporary national land use policies. Here, we modeled spatiotemporal selection patterns for telemetered sage-grouse across multiple study sites (1,084 sage-grouse; 30,690 locations) in the Great Basin. We developed broad-scale spatially explicit habitat indices that elucidated space use patterns (spring, summer/fall, and winter) and accounted for regional climatic variation using previously published hydrographic boundaries. We then evaluated differences in selection/avoidance of each habitat characteristic between seasons and hydrographic regions. Most notably, sage-grouse consistently selected areas dominated by sagebrush with few or no conifers but varied in type of sagebrush selected by season and region. Spatiotemporal variation was most apparent based on availability of water resources and herbaceous cover, where sage-grouse strongly selected upland natural springs in xeric regions but selected larger wet meadows in mesic regions. Additionally, during the breeding period in spring, herbaceous cover was selected strongly in the mesic regions. Lastly, we expanded upon an existing joint-index framework by combining seasonal habitat indices with a probabilistic index of sage-grouse abundance and space use to produce habitat maps useful for sage-grouse management. These products can serve as conservation planning tools that help predict expected benefits of restoration activities, while highlighting areas most critical to sustaining sage-grouse populations. Our joint-index framework can be applied to other species that exhibit seasonal shifts in habitat requirements to help better guide conservation actions.
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Affiliation(s)
- Peter S. Coates
- Western Ecological Research CenterU.S. Geological SurveyDixonCAUSA
| | | | - Mark A. Ricca
- Western Ecological Research CenterU.S. Geological SurveyDixonCAUSA
| | - John P. Severson
- Western Ecological Research CenterU.S. Geological SurveyDixonCAUSA
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31
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Dahlgren DK, Messmer TA, Crabb BA, Kohl MT, Frey SN, Thacker ET, Larsen RT, Baxter RJ. Sage‐grouse breeding and late brood‐rearing habitat guidelines in Utah. WILDLIFE SOC B 2019. [DOI: 10.1002/wsb.1029] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- David K. Dahlgren
- Jack H. Berryman Institute, Department of Wildland ResourcesUtah State University Logan UT 84322 USA
| | - Terry A. Messmer
- Jack H. Berryman Institute, Department of Wildland ResourcesUtah State University Logan UT 84322 USA
| | - Benjamin A. Crabb
- Remote Sensing/GIS Laboratory, Quinney College of Natural ResourcesUtah State UniversityLogan UT 84322 USA
| | - Michel T. Kohl
- Jack H. Berryman Institute, Department of Wildland ResourcesUtah State University Logan UT 84322 USA
| | - Shandra N. Frey
- Jack H. Berryman Institute, Department of Wildland ResourcesUtah State University Logan UT 84322 USA
| | - Eric T. Thacker
- Jack H. Berryman Institute, Department of Wildland ResourcesUtah State University Logan UT 84322 USA
| | - Randy T. Larsen
- The Monte L. Bean Life Sciences MuseumBrigham Young University Provo UT 84602 USA
| | - Rick J. Baxter
- Department of Plant and Wildlife SciencesBrigham Young University Provo Utah 84602 USA
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32
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Barlow NL, Kirol CP, Doherty KE, Fedy BC. Evaluation of the Umbrella Species Concept at Fine Spatial Scales. J Wildl Manage 2019. [DOI: 10.1002/jwmg.21791] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Natasha L. Barlow
- University of Waterloo 200 University Avenue West Waterloo ON N2L 3G1 Canada
| | | | - Kevin E. Doherty
- U.S. Fish and Wildlife Service 134 Union Blvd 400 Lakewood CO 80228 USA
| | - Bradley C. Fedy
- University of Waterloo 200 University Avenue West Waterloo ON N2L 3G1 Canada
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33
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Crosby AD, Bayne EM, Cumming SG, Schmiegelow FKA, Dénes FV, Tremblay JA. Differential habitat selection in boreal songbirds influences estimates of population size and distribution. DIVERS DISTRIB 2019. [DOI: 10.1111/ddi.12991] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Affiliation(s)
- Andrew D. Crosby
- Boreal Avian Modelling Project University of Alberta Edmonton AB Canada
- Department of Biological Sciences University of Alberta Edmonton AB Canada
| | - Erin M. Bayne
- Boreal Avian Modelling Project University of Alberta Edmonton AB Canada
- Department of Biological Sciences University of Alberta Edmonton AB Canada
| | - Steven G. Cumming
- Boreal Avian Modelling Project University of Alberta Edmonton AB Canada
- Department of Wood and Forest Science Laval University Quebec City QC Canada
| | - Fiona K. A. Schmiegelow
- Boreal Avian Modelling Project University of Alberta Edmonton AB Canada
- Department of Renewable Resources University of Alberta Edmonton AB Canada
| | - Francisco V. Dénes
- Boreal Avian Modelling Project University of Alberta Edmonton AB Canada
- Department of Renewable Resources University of Alberta Edmonton AB Canada
| | - Junior A. Tremblay
- Boreal Avian Modelling Project University of Alberta Edmonton AB Canada
- Sciences and Technology Branch Environment and Climate Change Canada Quebec City QC Canada
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Dunk JR, Woodbridge B, Lickfett TM, Bedrosian G, Noon BR, LaPlante DW, Brown JL, Tack JD. Modeling spatial variation in density of golden eagle nest sites in the western United States. PLoS One 2019; 14:e0223143. [PMID: 31568505 PMCID: PMC6768475 DOI: 10.1371/journal.pone.0223143] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Accepted: 09/13/2019] [Indexed: 11/19/2022] Open
Abstract
In order to contribute to conservation planning efforts for golden eagles (Aquila chrysaetos) in the western U.S., we developed nest site models using >6,500 nest site locations throughout a >3,483,000 km2 area of the western U.S. We developed models for twelve discrete modeling regions, and estimated relative density of nest sites for each region. Cross-validation showed that, in general, models accurately estimated relative nest site densities within regions and sub-regions. Areas estimated to have the highest densities of breeding golden eagles had from 132-2,660 times greater densities compared to the lowest density areas. Observed nest site densities were very similar to those reported from published studies. Large extents of each modeling region consisted of low predicted nest site density, while a small percentage of each modeling region contained disproportionately high nest site density. For example, we estimated that areas with relative nest density values <0.3 represented from 62.8-97.8% ([Formula: see text] = 82.5%) of each modeling area, and those areas contained from 14.7-30.0% ([Formula: see text] = 22.1%) of the nest sites. In contrast, areas with relative nest density values >0.5 represented from 1.0-12.8% ([Formula: see text] = 6.3%) of modeling areas, and those areas contained from 47.7-66.9% ([Formula: see text] = 57.3%) of the nest sites. Our findings have direct application to: 1) large-scale conservation planning efforts, 2) risk analyses for land-use proposals such as recreational trails or wind power development, and 3) identifying mitigation areas to offset the impacts of human disturbance.
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Affiliation(s)
- Jeffrey R. Dunk
- Department of Environmental Science and Management, Humboldt State University, Arcata, CA, United States of America
| | - Brian Woodbridge
- U.S. Fish and Wildlife Service, Corvallis, Oregon, United States of America
| | - Todd M. Lickfett
- U.S. Fish and Wildlife Service, Denver Federal Center, Denver, Colorado, United States of America
| | - Geoffrey Bedrosian
- U.S. Fish and Wildlife Service, Denver Federal Center, Denver, Colorado, United States of America
| | - Barry R. Noon
- Department of Fish, Wildlife, and Conservation Biology and Graduate Degree Program in Ecology, Colorado State University, Fort Collins, CO, United States of America
| | | | - Jessi L. Brown
- Department of Biology, University of Nevada Reno, Reno, NV, United States of America
| | - Jason D. Tack
- U.S. Fish and Wildlife Service, Missoula, Montana, United States of America
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35
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Smith KT, Dinkins JB, Beck JL. Approaches to delineate greater sage‐grouse winter concentration areas. J Wildl Manage 2019. [DOI: 10.1002/jwmg.21738] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Kurt T. Smith
- Department of Ecosystem Science and ManagementUniversity of Wyoming, 1000 E University Avenue Laramie WY 82071 USA
| | - Jonathan B. Dinkins
- Department of Animal and Rangeland SciencesOregon State University, 112 Withycombe Hall, 2921 SW Campus Way, CorvallisOregon 97331 USA
| | - Jeffrey L. Beck
- Department of Ecosystem Science and ManagementUniversity of Wyoming, 1000 E University AvenueLaramie WY 82071 USA
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36
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Henderson EB, Bell DM, Gregory MJ. Vegetation mapping to support greater sage‐grouse habitat monitoring and management: multi‐ or univariate approach? Ecosphere 2019. [DOI: 10.1002/ecs2.2838] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Affiliation(s)
- Emilie B. Henderson
- Institute for Natural Resources Oregon State University Portland Oregon 97207 USA
| | - David M. Bell
- USDA Forest Service, Pacific Northwest Research Station Corvallis Oregon 97331 USA
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37
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Chambers JC, Allen CR, Cushman SA. Operationalizing Ecological Resilience Concepts for Managing Species and Ecosystems at Risk. Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00241] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Chambers JC, Brooks ML, Germino MJ, Maestas JD, Board DI, Jones MO, Allred BW. Operationalizing Resilience and Resistance Concepts to Address Invasive Grass-Fire Cycles. Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00185] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Wann GT, Coates PS, Prochazka BG, Severson JP, Monroe AP, Aldridge CL. Assessing lek attendance of male greater sage‐grouse using fine‐resolution GPS data: Implications for population monitoring of lek mating grouse. POPUL ECOL 2019. [DOI: 10.1002/1438-390x.1019] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Gregory T. Wann
- U.S. Geological Survey Western Ecological Research Center Dixon California
| | - Peter S. Coates
- U.S. Geological Survey Western Ecological Research Center Dixon California
| | - Brian G. Prochazka
- U.S. Geological Survey Western Ecological Research Center Dixon California
| | - John P. Severson
- U.S. Geological Survey Western Ecological Research Center Dixon California
| | - Adrian P. Monroe
- Natural Resource Ecology Laboratory, Department of Ecosystem Science and Sustainability Colorado State University in cooperation with the US Geological Survey, Fort Collins Science Center Fort Collins Colorado
| | - Cameron L. Aldridge
- Natural Resource Ecology Laboratory, Department of Ecosystem Science and Sustainability Colorado State University in cooperation with the US Geological Survey, Fort Collins Science Center Fort Collins Colorado
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40
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O'Neil ST, Coates PS, Brussee BE, Jackson PJ, Howe KB, Moser AM, Foster LJ, Delehanty DJ. Broad‐scale occurrence of a subsidized avian predator: Reducing impacts of ravens on sage‐grouse and other sensitive prey. J Appl Ecol 2018. [DOI: 10.1111/1365-2664.13249] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Shawn T. O'Neil
- U.S. Geological Survey Western Ecological Research Center Dixon California
| | - Peter S. Coates
- U.S. Geological Survey Western Ecological Research Center Dixon California
| | - Brianne E. Brussee
- U.S. Geological Survey Western Ecological Research Center Dixon California
| | | | | | | | | | - David J. Delehanty
- Department of Biological Sciences Idaho State University Pocatello Idaho
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41
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Row JR, Doherty KE, Cross TB, Schwartz MK, Oyler‐McCance SJ, Naugle DE, Knick ST, Fedy BC. Quantifying functional connectivity: The role of breeding habitat, abundance, and landscape features on range-wide gene flow in sage-grouse. Evol Appl 2018; 11:1305-1321. [PMID: 30151042 PMCID: PMC6099827 DOI: 10.1111/eva.12627] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2017] [Accepted: 02/21/2018] [Indexed: 01/06/2023] Open
Abstract
Functional connectivity, quantified using landscape genetics, can inform conservation through the identification of factors linking genetic structure to landscape mechanisms. We used breeding habitat metrics, landscape attributes, and indices of grouse abundance, to compare fit between structural connectivity and genetic differentiation within five long-established Sage-Grouse Management Zones (MZ) I-V using microsatellite genotypes from 6,844 greater sage-grouse (Centrocercus urophasianus) collected across their 10.7 million-km2 range. We estimated structural connectivity using a circuit theory-based approach where we built resistance surfaces using thresholds dividing the landscape into "habitat" and "nonhabitat" and nodes were clusters of sage-grouse leks (where feather samples were collected using noninvasive techniques). As hypothesized, MZ-specific habitat metrics were the best predictors of differentiation. To our surprise, inclusion of grouse abundance-corrected indices did not greatly improve model fit in most MZs. Functional connectivity of breeding habitat was reduced when probability of lek occurrence dropped below 0.25 (MZs I, IV) and 0.5 (II), thresholds lower than those previously identified as required for the formation of breeding leks, which suggests that individuals are willing to travel through undesirable habitat. The individual MZ landscape results suggested terrain roughness and steepness shaped functional connectivity across all MZs. Across respective MZs, sagebrush availability (<10%-30%; II, IV, V), tree canopy cover (>10%; I, II, IV), and cultivation (>25%; I, II, IV, V) each reduced movement beyond their respective thresholds. Model validations confirmed variation in predictive ability across MZs with top resistance surfaces better predicting gene flow than geographic distance alone, especially in cases of low and high differentiation among lek groups. The resultant resistance maps we produced spatially depict the strength and redundancy of range-wide gene flow and can help direct conservation actions to maintain and restore functional connectivity for sage-grouse.
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Affiliation(s)
- Jeffrey R. Row
- School of Environment, Resources and SustainabilityUniversity of WaterlooWaterlooONCanada
| | | | - Todd B. Cross
- Rocky Mountain Research StationUSDA Forest ServiceNational Genomics Center for Wildlife and Fish ConservationMissoulaMTUSA
- College of Forestry and ConservationUniversity of MontanaMissoulaMTUSA
| | - Michael K. Schwartz
- Rocky Mountain Research StationUSDA Forest ServiceNational Genomics Center for Wildlife and Fish ConservationMissoulaMTUSA
| | | | - Dave E. Naugle
- College of Forestry and ConservationUniversity of MontanaMissoulaMTUSA
| | - Steven T. Knick
- Forest and Rangeland Ecosystem Science CenterU.S. Geological SurveyBoiseIDUSA
- Present address:
2140 White Pine Pl.BoiseID83706USA
| | - Bradley C. Fedy
- School of Environment, Resources and SustainabilityUniversity of WaterlooWaterlooONCanada
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42
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Palmquist KA, Bradford JB, Martyn TE, Schlaepfer DR, Lauenroth WK. STEPWAT
2: an individual‐based model for exploring the impact of climate and disturbance on dryland plant communities. Ecosphere 2018. [DOI: 10.1002/ecs2.2394] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Affiliation(s)
- Kyle A. Palmquist
- Department of Botany University of Wyoming Laramie Wyoming 82071 USA
| | - John B. Bradford
- U.S. Geological Survey, Southwest Biological Science Center Flagstaff Arizona 86001 USA
| | - Trace E. Martyn
- School of Biological Sciences The University of Queensland St. Lucia Queensland 4072 Australia
| | - Daniel R. Schlaepfer
- School of Forestry and Environmental Studies Yale University New Haven Connecticut 06511 USA
| | - William K. Lauenroth
- Department of Botany University of Wyoming Laramie Wyoming 82071 USA
- School of Forestry and Environmental Studies Yale University New Haven Connecticut 06511 USA
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43
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Ramey RR, Thorley JL, Ivey AS. Local and population-level responses of Greater sage-grouse to oil and gas development and climatic variation in Wyoming. PeerJ 2018; 6:e5417. [PMID: 30128198 PMCID: PMC6097500 DOI: 10.7717/peerj.5417] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2017] [Accepted: 07/19/2018] [Indexed: 11/20/2022] Open
Abstract
BACKGROUND Spatial scale is important when studying ecological processes. The Greater sage-grouse (Centrocercus urophasianus) is a large sexually dimorphic tetraonid that is endemic to the sagebrush biome of western North America. The impacts of oil and gas (OAG) development at individual leks has been well-documented. However, no previous studies have quantified the population-level response. METHODS Hierarchical models were used to estimate the effects of the areal disturbance due to well pads as well as climatic variation on individual lek counts and Greater sage-grouse populations (management units) over 32 years. The lek counts were analyzed using generalized linear mixed models while the management units were analyzed using Gompertz population dynamic models. The models were fitted using frequentist and Bayesian methods. An information-theoretic approach was used to identify the most important spatial scale and time lags. The relative importance of OAG and climate at the local and population-level scales was assessed using information-theoretic (Akaike's weights) and estimation (effect size) statistics. RESULTS At the local scale, OAG was an important negative predictor of the lek count. At the population scale, there was only weak support for OAG as a predictor of density changes but the estimated impacts on the long-term carrying capacity were consistent with summation of the local impacts. Regional climatic variation, as indexed by the Pacific Decadal Oscillation, was an important positive predictor of density changes at both the local and population level (particularly in the most recent part of the time series). CONCLUSIONS Additional studies to reduce the uncertainty in the range of possible effects of OAG at the population scale are required. Wildlife agencies need to account for the effects of regional climatic variation when managing sage-grouse populations.
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Affiliation(s)
- Rob R Ramey
- Wildlife Science International, Nederland, CO, USA
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44
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Ricca MA, Coates PS, Gustafson KB, Brussee BE, Chambers JC, Espinosa SP, Gardner SC, Lisius S, Ziegler P, Delehanty DJ, Casazza ML. A conservation planning tool for Greater Sage-grouse using indices of species distribution, resilience, and resistance. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2018; 28:878-896. [PMID: 29441692 DOI: 10.1002/eap.1690] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Revised: 11/13/2017] [Accepted: 12/08/2017] [Indexed: 06/08/2023]
Abstract
Managers require quantitative yet tractable tools that identify areas for restoration yielding effective benefits for targeted wildlife species and the ecosystems they inhabit. As a contemporary example of high national significance for conservation, the persistence of Greater Sage-grouse (Centrocercus urophasianus) in the Great Basin is compromised by strongly interacting stressors of conifer expansion, annual grass invasion, and more frequent wildfires occurring in sagebrush ecosystems. Associated restoration treatments to a sagebrush-dominated state are often costly and may yield relatively little ecological benefit to sage-grouse if implemented without estimating how Sage-grouse may respond to treatments, or do not consider underlying processes influencing sagebrush ecosystem resilience to disturbance and resistance to invasive species. Here, we describe example applications of a spatially explicit conservation planning tool (CPT) to inform prioritization of: (1) removal of conifers (i.e., pinyon-juniper); and (2) wildfire restoration aimed at improving habitat conditions for the Bi-State Distinct Population Segment of Sage-grouse along the California-Nevada state line. The CPT measures ecological benefits to sage-grouse for a given management action through a composite index comprised of resource selection functions and estimates of abundance and space use. For pinyon-juniper removal, we simulated changes in land-cover composition following the removal of sparse trees with intact understories, and ranked treatments on the basis of changes in ecological benefits per dollar-unit of cost. For wildfire restoration, we formulated a conditional model to simulate scenarios for land cover changes (e.g., sagebrush to annual grass) given estimated fire severity and underlying ecosystem processes influencing resilience to disturbance and resistance to invasion by annual grasses. For both applications, we compared CPT rankings to land cover changes along with sagebrush resistance and resilience metrics. Model results demonstrated how the CPT can be an important step in identifying management projects that yield the highest quantifiable benefit to Sage-grouse while avoiding costly misallocation of resources, and highlight the importance of considering changes in sage-grouse ecological response and factors influencing sagebrush ecosystem resilience to disturbance and resistance to invasion. This unique framework can be adopted to help inform other management questions aimed at improving habitat for other species across sagebrush and other ecosystems.
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Affiliation(s)
- Mark A Ricca
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, California, 95620, USA
| | - Peter S Coates
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, California, 95620, USA
| | - K Benjamin Gustafson
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, California, 95620, USA
| | - Brianne E Brussee
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, California, 95620, USA
| | - Jeanne C Chambers
- USDA Forest Service, Rocky Mountain Research Station, 920 Valley Road, Reno, Nevada, 89512, USA
| | - Shawn P Espinosa
- Nevada Department of Wildlife, 6980 Sierra Center Pkwy #120, Reno, Nevada, 89511, USA
| | - Scott C Gardner
- California Department of Fish and Wildlife, 1812 9th Street, Sacramento, California, 95814, USA
| | - Sherri Lisius
- Bureau of Land Management, 351 Pacu Lane, Suite 100, Bishop, California, 93514, USA
| | - Pilar Ziegler
- Bureau of Land Management, Carson City District, Sierra Front Field Office, 5665 Morgan Mill Road, Carson City, Nevada, 89701, USA
| | - David J Delehanty
- Department of Biological Sciences, Idaho State University, 921 S. 8th Avenue, Pocatello, Idaho, 83209, USA
| | - Michael L Casazza
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, California, 95620, USA
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Doherty KE, Hennig JD, Dinkins JB, Griffin KA, Cook AA, Maestas JD, Naugle DE, Beck JL. Understanding biological effectiveness before scaling up range-wide restoration investments for Gunnison sage-grouse. Ecosphere 2018. [DOI: 10.1002/ecs2.2144] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Affiliation(s)
| | - Jacob D. Hennig
- Department of Ecosystem Science and Management; University of Wyoming; Laramie Wyoming 82071 USA
| | - Jonathan B. Dinkins
- Department of Animal and Rangeland Sciences; Oregon State University; Corvallis Oregon 97331 USA
| | | | - Avery A. Cook
- Utah Division of Wildlife Resources; Salt Lake City Utah 84116 USA
| | - Jeremy D. Maestas
- Natural Resources Conservation Service; West National Technology Support Center; Portland Oregon 97232 USA
| | - David E. Naugle
- Wildlife Biology Program; University of Montana; Missoula Montana 59812 USA
| | - Jeffrey L. Beck
- Department of Ecosystem Science and Management; University of Wyoming; Laramie Wyoming 82071 USA
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46
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Smith JT, Tack JD, Doherty KE, Allred BW, Maestas JD, Berkeley LI, Dettenmaier SJ, Messmer TA, Naugle DE. Phenology largely explains taller grass at successful nests in greater sage-grouse. Ecol Evol 2018; 8:356-364. [PMID: 29321877 PMCID: PMC5756841 DOI: 10.1002/ece3.3679] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2017] [Revised: 10/02/2017] [Accepted: 11/08/2017] [Indexed: 01/20/2023] Open
Abstract
Much interest lies in the identification of manageable habitat variables that affect key vital rates for species of concern. For ground‐nesting birds, vegetation surrounding the nest may play an important role in mediating nest success by providing concealment from predators. Height of grasses surrounding the nest is thought to be a driver of nest survival in greater sage‐grouse (Centrocercus urophasianus; sage‐grouse), a species that has experienced widespread population declines throughout their range. However, a growing body of the literature has found that widely used field methods can produce misleading inference on the relationship between grass height and nest success. Specifically, it has been demonstrated that measuring concealment following nest fate (failure or hatch) introduces a temporal bias whereby successful nests are measured later in the season, on average, than failed nests. This sampling bias can produce inference suggesting a positive effect of grass height on nest survival, though the relationship arises due to the confounding effect of plant phenology, not an effect on predation risk. To test the generality of this finding for sage‐grouse, we reanalyzed existing datasets comprising >800 sage‐grouse nests from three independent studies across the range where there was a positive relationship found between grass height and nest survival, including two using methods now known to be biased. Correcting for phenology produced equivocal relationships between grass height and sage‐grouse nest survival. Viewed in total, evidence for a ubiquitous biological effect of grass height on sage‐grouse nest success across time and space is lacking. In light of these findings, a reevaluation of land management guidelines emphasizing specific grass height targets to promote nest success may be merited.
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Affiliation(s)
- Joseph T Smith
- Wildlife Biology Program University of Montana Missoula MT USA
| | - Jason D Tack
- US Fish & Wildlife Service, Habitat and Population Evaluation Team Missoula MT USA
| | | | - Brady W Allred
- W.A. Franke College of Forestry and Conservation University of Montana Missoula MT USA
| | - Jeremy D Maestas
- USDA Natural Resources Conservation Service West National Technology Support Center Portland OR USA
| | | | - Seth J Dettenmaier
- Department of Wildland Resources Jack H. Berryman Institute Utah State University Logan UT USA
| | - Terry A Messmer
- Department of Wildland Resources Jack H. Berryman Institute Utah State University Logan UT USA
| | - David E Naugle
- Wildlife Biology Program University of Montana Missoula MT USA
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Carlisle JD, Stewart DR, Chalfoun AD. AN INVERTEBRATE ECOSYSTEM ENGINEER UNDER THE UMBRELLA OF SAGE-GROUSE CONSERVATION. WEST N AM NATURALIST 2017; 77:450-463. [PMID: 37799165 PMCID: PMC10552609 DOI: 10.3398/064.077.0406] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/07/2023]
Abstract
Conservation practitioners often rely on areas designed to protect species of greatest conservation priority to also conserve co-occurring species (i.e., the umbrella species concept). The extent to which vertebrate species may serve as suitable umbrellas for invertebrate species, however, has rarely been explored. Sage-grouse (Centrocercus spp.) have high conservation priority throughout much of the rangelands of western North America and are considered an umbrella species through which the conservation of entire rangeland ecosystems can be accomplished. Harvester ants are ecosystem engineers and play important roles in the maintenance and function of rangeland ecosystems. We compared indices of the abundance of western harvester ants (Pogonomyrmex occidentalis) and Greater Sage-Grouse (Centrocercus urophasianus) at 72 sites in central Wyoming, USA in 2012. The abundance of harvester ant mounds was best predicted by a regression model that included a combination of local habitat characteristics and the abundance of sage-grouse. When controlling for habitat-related factors, areas with higher abundances of sage-grouse pellets (an index of sage-grouse abundance and/or habitat use) had higher abundances of ant mounds than areas with lower abundances of sage-grouse pellets. The causal mechanism underlying this positive relationship between sage-grouse and ant mound abundance at the fine scale could be indirect (e.g., both species prefer similar environmental conditions) or direct (e.g., sage-grouse prefer areas with a high abundance of ant mounds because ants are an important prey item during certain life stages). We observed no relationship between a broad-scale index of breeding sage-grouse density and the abundance of ant mounds. We suspect that consideration of the non-breeding habitat of sage-grouse and finer-scale measures of sage-grouse abundance are critical to the utility of sage-grouse as an umbrella species for the conservation of harvester ants and their important role in rangeland ecosystems.
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Affiliation(s)
- Jason D Carlisle
- Wyoming Cooperative Fish & Wildlife Research Unit, Department of Zoology & Physiology, Program in Ecology, University of Wyoming, Dept. 3166, 1000 E. University Ave., Laramie, WY 82071, USA
- Present address: Western EcoSystems Technology, Inc., 200 S. 2nd St., Laramie, WY 82070, USA
| | - David R Stewart
- U.S. Fish and Wildlife Service, Division of Biological Sciences, P.O. Box 1306, Albuquerque, NM 87103, USA
| | - Anna D Chalfoun
- U.S. Geological Survey Wyoming Cooperative Fish & Wildlife Research Unit, Department of Zoology & Physiology, Program in Ecology, University of Wyoming, Dept. 3166, 1000 E. University Ave., Laramie, WY 82071, USA
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48
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Dinkins JB, Lawson KJ, Smith KT, Beck JL, Kirol CP, Pratt AC, Conover MR, Blomquist FC. Quantifying overlap and fitness consequences of migration strategy with seasonal habitat use and a conservation policy. Ecosphere 2017. [DOI: 10.1002/ecs2.1991] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Affiliation(s)
- Jonathan B. Dinkins
- Department of Ecosystem Science and Management; University of Wyoming; Laramie Wyoming 82071 USA
| | - Kirstie J. Lawson
- Department of Ecosystem Science and Management; University of Wyoming; Laramie Wyoming 82071 USA
| | - Kurt T. Smith
- Department of Ecosystem Science and Management; University of Wyoming; Laramie Wyoming 82071 USA
| | - Jeffrey L. Beck
- Department of Ecosystem Science and Management; University of Wyoming; Laramie Wyoming 82071 USA
| | - Christopher P. Kirol
- Department of Ecosystem Science and Management; University of Wyoming; Laramie Wyoming 82071 USA
| | - Aaron C. Pratt
- Department of Ecosystem Science and Management; University of Wyoming; Laramie Wyoming 82071 USA
| | - Michael R. Conover
- Department of Wildland Resources; Utah State University; 5230 Old Main Hill Logan Utah 84322 USA
| | - Frank C. Blomquist
- Bureau of Land Management; Rawlins Field Office Rawlins Wyoming 82301 USA
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49
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Row JR, Fedy BC. Spatial and temporal variation in the range-wide cyclic dynamics of greater sage-grouse. Oecologia 2017; 185:687-698. [PMID: 29052009 DOI: 10.1007/s00442-017-3970-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2016] [Accepted: 09/27/2017] [Indexed: 01/17/2023]
Abstract
Periodic changes in abundance, or population cycles, are common in a variety of species and is one of the most widely studied ecological phenomena. The strength of, and synchrony between population cycles can vary across time and space and understanding these patterns can provide insight into the mechanisms generating population cycles and their variability within and among species. Here, we used wavelet and spectral analysis on a range-wide dataset of abundance for the greater sage-grouse (Centrocercus urophasianus) to test for regional differences in temporal cyclicity. Overall, we found that most populations (11 of 15) were cyclic at some point in a 50-year time series (1965-2015), but the patterns varied over both time and space. Several peripheral populations demonstrated amplitude dampening or loss of cyclicity following population lows in the mid-1990s. Populations through the core of the range in the Great and Wyoming Basins had more consistent cyclic dynamics, but period length appeared to shorten from 10-12 to 6-8 years. In one time period, where cyclicity was greatest overall, increased pairwise population synchrony was correlated with cycle intensity. Our work represents a comprehensive range-wide assessment of cyclic dynamics and revealed substantial variation in temporal and spatial trends of cyclic dynamics across populations.
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Affiliation(s)
- Jeffrey R Row
- School of Environment, Resources and Sustainability, University of Waterloo, 200 University Ave. West, Waterloo, ON, N2L 3G1, Canada.
| | - Bradley C Fedy
- School of Environment, Resources and Sustainability, University of Waterloo, 200 University Ave. West, Waterloo, ON, N2L 3G1, Canada
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Reinhardt JR, Naugle DE, Maestas JD, Allred B, Evans J, Falkowski M. Next‐generation restoration for sage‐grouse: a framework for visualizing local conifer cuts within a landscape context. Ecosphere 2017. [DOI: 10.1002/ecs2.1888] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Affiliation(s)
- Jason R. Reinhardt
- Department of Forest Resources University of Minnesota Minneapolis Minnesota 55108 USA
| | - David E. Naugle
- Wildlife Biology Program University of Montana Missoula Montana 59812 USA
| | | | - Brady Allred
- College of Forestry and Conservation University of Montana Missoula Montana 59812 USA
| | | | - Michael Falkowski
- Department of Forest Resources University of Minnesota Minneapolis Minnesota 55108 USA
- Department of Ecosystem Science and Sustainability Colorado State University Colorado 80523 USA
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