Wildfire immediately reduces nest and adult survival of greater sage-grouse

Wildfire events are becoming more frequent and severe on a global scale. Rising temperatures, prolonged drought, and the presence of pyrophytic invasive grasses are contributing to the degradation of native vegetation communities. Within the Great Basin region of the western U.S., increasing wildfire frequency is transforming the ecosystem toward a higher degree of homogeneity, one dominated by invasive annual grasses and declining landscape productivity. Greater sage-grouse (Centrocercus urophasianus; hereafter sage-grouse) are a species of conservation concern that rely on large tracts of structurally and functionally diverse sagebrush (Artemisia spp.) communities. Using a 12-year (2008-2019) telemetry dataset, we documented immediate impacts of wildfire on demographic rates of a population of sage-grouse that were exposed to two large wildfire events (Virginia Mountains Fire Complex-2016; Long Valley Fire-2017) near the border of California and Nevada. Spatiotemporal heterogeneity in demographic rates were accounted for using a Before-After Control-Impact Paired Series (BACIPS) study design. Results revealed a 40% reduction in adult survival and a 79% reduction in nest survival within areas impacted by wildfires. Our results indicate that wildfire has strong and immediate impacts to two key life stages of a sagebrush indicator species and underscores the importance of fire suppression and immediate restoration following wildfire events.

A retrospective assessment of fuel break effectiveness for containing rangeland wildfires in the sagebrush biome

Escalated wildfire activity within the western U.S. has widespread societal impacts and long-term consequences for the imperiled sagebrush (Artemisia spp.) biome. Shifts from historical fire regimes and the interplay between frequent disturbance and invasive annual grasses may initiate permanent state transitions as wildfire frequency outpaces sagebrush communities' innate capacity to recover. Therefore, wildfire management is at the core of conservation plans for sagebrush ecosystems, especially critical habitat for species of conservation concern such as the greater sage-grouse (Centrocercus urophasianus; hereafter sage-grouse). Fuel breaks help facilitate wildfire suppression by modifying behavior through fuels modification and allowing safe access points for containment by firefighters. The Bureau of Land Management has proposed to roughly double the existing fuel break network in the western U.S., centered on the Great Basin. To our knowledge, no broad-scale examination of fuel break effectiveness or the environmental conditions under which fuel breaks are expected to be most effective has been conducted. We performed a retrospective assessment of probability of fuel break contributing to wildfire containment on recorded wildfire and fuel break interactions from 1985 to 2018 within the western U.S. We characterized environmental, fuels, and weather conditions within 500 m of wildfire contact, and within 5 km of the approaching wildfire. We used a binomial mixed model within a Bayesian framework to identify relationships between these variables and fuel break success. Fuel breaks were least successful in areas classified as having low resilience to disturbance and low resistance to invasion, in areas composed of primarily woody fuels, and when operating in high temperature and low precipitation conditions. Fuel breaks were most effective in areas where fine fuels dominated and in areas that were readily accessible. Maintenance history and fuel break type also contributed to the probability of containment. Overall results indicate a complex and sometimes paradoxical relationship between landscape characteristics that promote wildfire spread and those that impact fuel break effectiveness. Finally, we developed predictive maps of fuel break effectiveness by fuel break type to further elucidate these complex relationships and to inform urgently needed fuel break placement and maintenance priorities across the sagebrush biome.

Wildfire and the ecological niche: Diminishing habitat suitability for an indicator species within semi-arid ecosystems

Globally accelerating frequency and extent of wildfire threatens the persistence of specialist wildlife species through direct loss of habitat and indirect facilitation of exotic invasive species. Habitat specialists may be especially prone to rapidly changing environmental conditions because their ability to adapt lags behind the rate of habitat alteration. As a result, these populations may become increasingly susceptible to ecological traps by returning to suboptimal breeding habitats that were dramatically altered by disturbance. We demonstrate a multistage modeling approach that integrates habitat selection and survival during the key nesting life-stage of a bird species of high conservation concern, the greater sage-grouse (Centrocercus urophasianus; hereafter, sage-grouse). We applied these spatially explicit models to a spatiotemporally robust dataset of sage-grouse nest locations and fates across wildfire-altered sagebrush ecosystems of the Great Basin ecoregion, western United States. Female sage-grouse exhibited intricate habitat selection patterns that varied across regional gradients of ecological productivity among sagebrush communities, but often selected nest sites that disproportionately resulted in nest failure. For example, 23% of nests occurred in wildfire-affected habitats characterized by reduced sagebrush cover and greater composition of invasive annual grasses. We found survival of nests was negatively associated with wildfire-affected areas, but positively associated with higher elevations with increased ruggedness and overall shrub cover. Strong site fidelity likely drove sage-grouse to continue nesting in habitats degraded by wildfire. Hence, increasing frequency and extent of wildfire may contribute disproportionately to reduced reproductive success by creating ecological traps that act as population sinks. Identifying such habitat mismatches between selection and survival facilitates deeper understanding of the mechanisms driving reduced geographic niche space and population decline at broad spatiotemporal scales, while guiding management actions to areas that would be most beneficial to the species.

Spatially explicit models of seasonal habitat for greater sage-grouse at broad spatial scales: Informing areas for management in Nevada and northeastern California

Defining boundaries of species' habitat across broad spatial scales is often necessary for management decisions, and yet challenging for species that demonstrate differential variation in seasonal habitat use. Spatially explicit indices that incorporate temporal shifts in selection can help overcome such challenges, especially for species of high conservation concern. Greater sage-grouse Centrocercus urophasianus (hereafter, sage-grouse), a sagebrush obligate species inhabiting the American West, represents an important case study because sage-grouse exhibit seasonal habitat patterns, populations are declining in most portions of their range and are central to contemporary national land use policies. Here, we modeled spatiotemporal selection patterns for telemetered sage-grouse across multiple study sites (1,084 sage-grouse; 30,690 locations) in the Great Basin. We developed broad-scale spatially explicit habitat indices that elucidated space use patterns (spring, summer/fall, and winter) and accounted for regional climatic variation using previously published hydrographic boundaries. We then evaluated differences in selection/avoidance of each habitat characteristic between seasons and hydrographic regions. Most notably, sage-grouse consistently selected areas dominated by sagebrush with few or no conifers but varied in type of sagebrush selected by season and region. Spatiotemporal variation was most apparent based on availability of water resources and herbaceous cover, where sage-grouse strongly selected upland natural springs in xeric regions but selected larger wet meadows in mesic regions. Additionally, during the breeding period in spring, herbaceous cover was selected strongly in the mesic regions. Lastly, we expanded upon an existing joint-index framework by combining seasonal habitat indices with a probabilistic index of sage-grouse abundance and space use to produce habitat maps useful for sage-grouse management. These products can serve as conservation planning tools that help predict expected benefits of restoration activities, while highlighting areas most critical to sustaining sage-grouse populations. Our joint-index framework can be applied to other species that exhibit seasonal shifts in habitat requirements to help better guide conservation actions.

Spatially explicit models of seasonal habitat for greater sage-grouse at broad spatial scales: Informing areas for management in Nevada and northeastern California

Defining boundaries of species' habitat across broad spatial scales is often necessary for management decisions, and yet challenging for species that demonstrate differential variation in seasonal habitat use. Spatially explicit indices that incorporate temporal shifts in selection can help overcome such challenges, especially for species of high conservation concern. Greater sage-grouse Centrocercus urophasianus (hereafter, sage-grouse), a sagebrush obligate species inhabiting the American West, represents an important case study because sage-grouse exhibit seasonal habitat patterns, populations are declining in most portions of their range and are central to contemporary national land use policies. Here, we modeled spatiotemporal selection patterns for telemetered sage-grouse across multiple study sites (1,084 sage-grouse; 30,690 locations) in the Great Basin. We developed broad-scale spatially explicit habitat indices that elucidated space use patterns (spring, summer/fall, and winter) and accounted for regional climatic variation using previously published hydrographic boundaries. We then evaluated differences in selection/avoidance of each habitat characteristic between seasons and hydrographic regions. Most notably, sage-grouse consistently selected areas dominated by sagebrush with few or no conifers but varied in type of sagebrush selected by season and region. Spatiotemporal variation was most apparent based on availability of water resources and herbaceous cover, where sage-grouse strongly selected upland natural springs in xeric regions but selected larger wet meadows in mesic regions. Additionally, during the breeding period in spring, herbaceous cover was selected strongly in the mesic regions. Lastly, we expanded upon an existing joint-index framework by combining seasonal habitat indices with a probabilistic index of sage-grouse abundance and space use to produce habitat maps useful for sage-grouse management. These products can serve as conservation planning tools that help predict expected benefits of restoration activities, while highlighting areas most critical to sustaining sage-grouse populations. Our joint-index framework can be applied to other species that exhibit seasonal shifts in habitat requirements to help better guide conservation actions.

A conservation planning tool for Greater Sage-grouse using indices of species distribution, resilience, and resistance

Managers require quantitative yet tractable tools that identify areas for restoration yielding effective benefits for targeted wildlife species and the ecosystems they inhabit. As a contemporary example of high national significance for conservation, the persistence of Greater Sage-grouse (Centrocercus urophasianus) in the Great Basin is compromised by strongly interacting stressors of conifer expansion, annual grass invasion, and more frequent wildfires occurring in sagebrush ecosystems. Associated restoration treatments to a sagebrush-dominated state are often costly and may yield relatively little ecological benefit to sage-grouse if implemented without estimating how Sage-grouse may respond to treatments, or do not consider underlying processes influencing sagebrush ecosystem resilience to disturbance and resistance to invasive species. Here, we describe example applications of a spatially explicit conservation planning tool (CPT) to inform prioritization of: (1) removal of conifers (i.e., pinyon-juniper); and (2) wildfire restoration aimed at improving habitat conditions for the Bi-State Distinct Population Segment of Sage-grouse along the California-Nevada state line. The CPT measures ecological benefits to sage-grouse for a given management action through a composite index comprised of resource selection functions and estimates of abundance and space use. For pinyon-juniper removal, we simulated changes in land-cover composition following the removal of sparse trees with intact understories, and ranked treatments on the basis of changes in ecological benefits per dollar-unit of cost. For wildfire restoration, we formulated a conditional model to simulate scenarios for land cover changes (e.g., sagebrush to annual grass) given estimated fire severity and underlying ecosystem processes influencing resilience to disturbance and resistance to invasion by annual grasses. For both applications, we compared CPT rankings to land cover changes along with sagebrush resistance and resilience metrics. Model results demonstrated how the CPT can be an important step in identifying management projects that yield the highest quantifiable benefit to Sage-grouse while avoiding costly misallocation of resources, and highlight the importance of considering changes in sage-grouse ecological response and factors influencing sagebrush ecosystem resilience to disturbance and resistance to invasion. This unique framework can be adopted to help inform other management questions aimed at improving habitat for other species across sagebrush and other ecosystems.

Long-term and widespread changes in agricultural practices influence ring-necked pheasant abundance in California

Declines in bird populations in agricultural regions of North America and Europe have been attributed to agricultural industrialization, increases in use of agrochemical application, and increased predation related to habitat modification. Based on count data compiled from Breeding Bird Survey (BBS) from 1974 to 2012, Christmas Bird Count (CBC) collected from 1914 to 2013, and hunter data from Annual Game Take Survey (AGTS) for years 1948–2010, ring‐necked pheasants (Phasianus colchicus) in California have experienced substantial declines in agricultural environments. Using a modeling approach that integrates all three forms of survey data into a joint response abundance index, we found pheasant abundance was related to the amount of harvested and unharvested crop land, types of crops produced, amount of total pesticide applied, minimum temperature, precipitation, and numbers of avian competitors and predators. Specifically, major changes in agricultural practices over the last three decades were associated with declines in pheasant numbers and likely reflected widespread loss of habitat. For example, increases in cropland were associated with increased pheasant abundance during early years of study but this effect decreased through time, such that no association in recent years was evidenced. A post hoc analysis revealed that crops beneficial to pheasant abundance (e.g., barley) have declined substantially in recent decades and were replaced by less advantageous crops (e.g., nut trees). An additional analysis using a restricted data set (1990–2013) indicated recent negative impacts on pheasant numbers associated with land use practices were also associated with relatively high levels of pesticide application. Our results may provide valuable information for management policies aimed at reducing widespread declines in pheasant populations in California and may be applicable to other avian species within agricultural settings. Furthermore, this general analytical approach is not limited to pheasants and could be applied to other taxa for which multiple survey data sources exist.

Integrating spatially explicit indices of abundance and habitat quality: an applied example for greater sage-grouse management

Predictive species distributional models are a cornerstone of wildlife conservation planning. Constructing such models requires robust underpinning science that integrates formerly disparate data types to achieve effective species management.

Greater sage‐grouse Centrocercus urophasianus, hereafter ‘sage‐grouse’ populations are declining throughout sagebrush‐steppe ecosystems in North America, particularly within the Great Basin, which heightens the need for novel management tools that maximize the use of available information.

Herein, we improve upon existing species distribution models by combining information about sage‐grouse habitat quality, distribution and abundance from multiple data sources. To measure habitat, we created spatially explicit maps depicting habitat selection indices (HSI) informed by >35 500 independent telemetry locations from >1600 sage‐grouse collected over 15 years across much of the Great Basin. These indices were derived from models that accounted for selection at different spatial scales and seasons. A region‐wide HSI was calculated using the HSI surfaces modelled for 12 independent subregions and then demarcated into distinct habitat quality classes.

We also employed a novel index to describe landscape patterns of sage‐grouse abundance and space use (AUI). The AUI is a probabilistic composite of the following: (i) breeding density patterns based on the spatial configuration of breeding leks and associated trends in male attendance; and (ii) year‐round patterns of space use indexed by the decreasing probability of use with increasing distance to leks. The continuous AUI surface was then reclassified into two classes representing high and low/no use and abundance.

Synthesis and applications. Using the example of sage‐grouse, we demonstrate how the joint application of indices of habitat selection, abundance and space use derived from multiple data sources yields a composite map that can guide effective allocation of management intensity across multiple spatial scales. As applied to sage‐grouse, the composite map identifies spatially explicit management categories within sagebrush steppe that are most critical to sustaining sage‐grouse populations as well as those areas where changes in land use would likely have minimal impact. Importantly, collaborative efforts among stakeholders guide which intersections of habitat selection indices and abundance and space use classes are used to define management categories. Because sage‐grouse are an umbrella species, our joint‐index modelling approach can help target effective conservation for other sagebrush obligate species and can be readily applied to species in other ecosystems with similar life histories, such as central‐placed breeding.

Using the example of sage‐grouse, we demonstrate how the joint application of indices of habitat selection, abundance and space use derived from multiple data sources yields a composite map that can guide effective allocation of management intensity across multiple spatial scales. As applied to sage‐grouse, the composite map identifies spatially explicit management categories within sagebrush steppe that are most critical to sustaining sage‐grouse populations as well as those areas where changes in land use would likely have minimal impact. Importantly, collaborative efforts among stakeholders guide which intersections of habitat selection indices and abundance and space use classes are used to define management categories. Because sage‐grouse are an umbrella species, our joint‐index modelling approach can help target effective conservation for other sagebrush obligate species and can be readily applied to species in other ecosystems with similar life histories, such as central‐placed breeding.

Metals and trace elements in giant garter snakes (Thamnophis gigas) from the Sacramento Valley, California, USA

The giant garter snake (GGS; Thamnophis gigas) is a federally listed threatened species endemic to wetlands of the Central Valley of California. Habitat destruction has been the main factor in the decline of GGS populations, but the effects of contaminants on this species are unknown. To contribute to the recovery of these snakes, the U.S. Geological Survey (USGS) began studies of the life history and habitat use of GGSs in 1995. During a series of investigations conducted from 1995 to the present, specimens of dead GGSs were opportunistically collected from the Colusa National Wildlife Refuge (CNWR), the Natomas Basin, and other sites in northern California. Whole snakes were stored frozen for potential future analysis. As funding became available, we analyzed tissues of 23 GGSs to determine the concentrations of total mercury (Hg) and other trace elements in livers and concentrations of Hg in brains and tail clips. Mercury concentrations (microg/g, wet weight) ranged from 0.08 to 1.64 in livers, 0.01 to 0.18 in brains, and 0.02 to 0.32 in tail clips. In livers, geometric mean concentrations (microg/g, dry weight) of arsenic (25.7) and chromium (1.02) were higher than most values from studies of other snakes. Mercury concentrations in tail clips were positively correlated with concentrations in livers and brains, with the most significant correlations occurring at the Natomas Basin and when Natomas and CNWR were combined. Results indicate the value of using tail clips as a nonlethal bioindicator of contaminant concentrations.