• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4832034)   Today's Articles (5687)
For: Torres J, Briggs JAG, Arkin IT. Multiple site-specific infrared dichroism of CD3-zeta, a transmembrane helix bundle. J Mol Biol 2002;316:365-74. [PMID: 11851344 DOI: 10.1006/jmbi.2001.5267] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Number Cited by Other Article(s)
1
Salamatova E, Cunha AV, Bloem R, Roeters SJ, Woutersen S, Jansen TLC, Pshenichnikov MS. Hydrophobic Collapse in N-Methylacetamide-Water Mixtures. J Phys Chem A 2018;122:2468-2478. [PMID: 29425450 PMCID: PMC6028151 DOI: 10.1021/acs.jpca.8b00276] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2018] [Revised: 02/02/2018] [Indexed: 11/28/2022]
2
Surya W, Li Y, Torres J. Structural model of the SARS coronavirus E channel in LMPG micelles. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2018;1860:1309-1317. [PMID: 29474890 PMCID: PMC7094280 DOI: 10.1016/j.bbamem.2018.02.017] [Citation(s) in RCA: 121] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/01/2017] [Revised: 02/14/2018] [Accepted: 02/16/2018] [Indexed: 01/27/2023]
3
Ghosh A, Ostrander JS, Zanni MT. Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy. Chem Rev 2017;117:10726-10759. [PMID: 28060489 PMCID: PMC5500453 DOI: 10.1021/acs.chemrev.6b00582] [Citation(s) in RCA: 192] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
4
Manor J, Arbely E, Beerlink A, Akkawi M, Arkin IT. Use of Isotope-Edited FTIR to Derive a Backbone Structure of a Transmembrane Protein. J Phys Chem Lett 2014;5:2573-2579. [PMID: 26277945 DOI: 10.1021/jz501055d] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
5
Castro M, van Santen HM, Férez M, Alarcón B, Lythe G, Molina-París C. Receptor Pre-Clustering and T cell Responses: Insights into Molecular Mechanisms. Front Immunol 2014;5:132. [PMID: 24817867 PMCID: PMC4012210 DOI: 10.3389/fimmu.2014.00132] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2013] [Accepted: 03/15/2014] [Indexed: 11/13/2022]  Open
6
Dunbar KL, Mitchell DA. Insights into the mechanism of peptide cyclodehydrations achieved through the chemoenzymatic generation of amide derivatives. J Am Chem Soc 2013;135:8692-701. [PMID: 23721104 DOI: 10.1021/ja4029507] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
7
Manor J, Arkin IT. Gaining insight into membrane protein structure using isotope-edited FTIR. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2012. [PMID: 23196348 DOI: 10.1016/j.bbamem.2012.11.020] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
8
Hohlweg W, Kosol S, Zangger K. Determining the orientation and localization of membrane-bound peptides. Curr Protein Pept Sci 2012;13:267-79. [PMID: 22044140 PMCID: PMC3394173 DOI: 10.2174/138920312800785049] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2010] [Revised: 10/01/2011] [Accepted: 10/10/2011] [Indexed: 01/06/2023]
9
Manor J, Feldblum ES, Zanni MT, Arkin IT. Environment Polarity in Proteins Mapped Noninvasively by FTIR Spectroscopy. J Phys Chem Lett 2012;3:939-944. [PMID: 22563521 PMCID: PMC3341589 DOI: 10.1021/jz300150v] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
10
Thielges MC, Axup JY, Wong D, Lee HS, Chung JK, Schultz PG, Fayer MD. Two-dimensional IR spectroscopy of protein dynamics using two vibrational labels: a site-specific genetically encoded unnatural amino acid and an active site ligand. J Phys Chem B 2011;115:11294-304. [PMID: 21823631 PMCID: PMC3261801 DOI: 10.1021/jp206986v] [Citation(s) in RCA: 83] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
11
Smith EE, Linderman BY, Luskin AC, Brewer SH. Probing Local Environments with the Infrared Probe: l-4-Nitrophenylalanine. J Phys Chem B 2011;115:2380-5. [DOI: 10.1021/jp109288j] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
12
A Transmembrane Polar Interaction Is Involved in the Functional Regulation of Integrin αLβ2. J Mol Biol 2010;398:569-83. [DOI: 10.1016/j.jmb.2010.03.027] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2010] [Revised: 03/11/2010] [Accepted: 03/15/2010] [Indexed: 01/30/2023]
13
Bordag N, Keller S. α-Helical transmembrane peptides: A “Divide and Conquer” approach to membrane proteins. Chem Phys Lipids 2010;163:1-26. [PMID: 19682979 DOI: 10.1016/j.chemphyslip.2009.07.009] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2009] [Revised: 07/21/2009] [Accepted: 07/21/2009] [Indexed: 11/26/2022]
14
Peng WC, Lin X, Torres J. The strong dimerization of the transmembrane domain of the fibroblast growth factor receptor (FGFR) is modulated by C-terminal juxtamembrane residues. Protein Sci 2009;18:450-9. [PMID: 19165726 DOI: 10.1002/pro.65] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
15
Miyake-Stoner SJ, Miller AM, Hammill JT, Peeler JC, Hess KR, Mehl RA, Brewer SH. Probing Protein Folding Using Site-Specifically Encoded Unnatural Amino Acids as FRET Donors with Tryptophan. Biochemistry 2009;48:5953-62. [DOI: 10.1021/bi900426d] [Citation(s) in RCA: 102] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
16
Two-dimensional IR spectroscopy and isotope labeling defines the pathway of amyloid formation with residue-specific resolution. Proc Natl Acad Sci U S A 2009;106:6614-9. [PMID: 19346479 DOI: 10.1073/pnas.0805957106] [Citation(s) in RCA: 245] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]  Open
17
Lin YS, Shorb JM, Mukherjee P, Zanni MT, Skinner JL. Empirical amide I vibrational frequency map: application to 2D-IR line shapes for isotope-edited membrane peptide bundles. J Phys Chem B 2009;113:592-602. [PMID: 19053670 PMCID: PMC2633092 DOI: 10.1021/jp807528q] [Citation(s) in RCA: 124] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
18
Parthasarathy K, Lin X, Tan SM, Law SKA, Torres J. Transmembrane helices that form two opposite homodimeric interactions: an asparagine scan study of alphaM and beta2 integrins. Protein Sci 2008;17:930-8. [PMID: 18369198 DOI: 10.1110/ps.073234208] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
19
Cho M. Coherent two-dimensional optical spectroscopy. Chem Rev 2008;108:1331-418. [PMID: 18363410 DOI: 10.1021/cr078377b] [Citation(s) in RCA: 548] [Impact Index Per Article: 32.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
20
Marecek J, Song B, Brewer S, Belyea J, Dyer RB, Raleigh DP. A Simple and Economical Method for the Production of 13C,18O-Labeled Fmoc-Amino Acids with High Levels of Enrichment:  Applications to Isotope-Edited IR Studies of Proteins. Org Lett 2007;9:4935-7. [DOI: 10.1021/ol701913p] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
21
Gan SW, Xin L, Torres J. The transmembrane homotrimer of ADAM 1 in model lipid bilayers. Protein Sci 2006;16:285-92. [PMID: 17189481 PMCID: PMC2203282 DOI: 10.1110/ps.062494307] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
22
Mukherjee P, Kass I, Arkin IT, Zanni MT. Structural disorder of the CD3zeta transmembrane domain studied with 2D IR spectroscopy and molecular dynamics simulations. J Phys Chem B 2006;110:24740-9. [PMID: 17134238 PMCID: PMC2722928 DOI: 10.1021/jp0640530] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
23
Mukherjee P, Krummel AT, Fulmer EC, Kass I, Arkin IT, Zanni MT. Site-specific vibrational dynamics of the CD3zeta membrane peptide using heterodyned two-dimensional infrared photon echo spectroscopy. J Chem Phys 2006;120:10215-24. [PMID: 15268045 DOI: 10.1063/1.1718332] [Citation(s) in RCA: 94] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
24
Arkin IT. Isotope-edited IR spectroscopy for the study of membrane proteins. Curr Opin Chem Biol 2006;10:394-401. [PMID: 16935550 PMCID: PMC7185810 DOI: 10.1016/j.cbpa.2006.08.013] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2006] [Accepted: 08/15/2006] [Indexed: 11/25/2022]
25
Torres J, Parthasarathy K, Lin X, Saravanan R, Kukol A, Liu DX. Model of a putative pore: the pentameric alpha-helical bundle of SARS coronavirus E protein in lipid bilayers. Biophys J 2006;91:938-47. [PMID: 16698774 PMCID: PMC1563757 DOI: 10.1529/biophysj.105.080119] [Citation(s) in RCA: 83] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]  Open
26
Mukherjee P, Kass I, Arkin IT, Zanni MT. Picosecond dynamics of a membrane protein revealed by 2D IR. Proc Natl Acad Sci U S A 2006;103:3528-33. [PMID: 16505377 PMCID: PMC1383493 DOI: 10.1073/pnas.0508833103] [Citation(s) in RCA: 177] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
27
Manor J, Khattari Z, Salditt T, Arkin IT. Disorder influence on linear dichroism analyses of smectic phases. Biophys J 2005;89:563-71. [PMID: 15834005 PMCID: PMC1366556 DOI: 10.1529/biophysj.104.058842] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
28
Kass I, Arbely E, Arkin IT. Modeling sample disorder in site-specific dichroism studies of uniaxial systems. Biophys J 2004;86:2502-7. [PMID: 15041686 PMCID: PMC1304097 DOI: 10.1016/s0006-3495(04)74305-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]  Open
29
Arbely E, Kass I, Arkin IT. Site-specific dichroism analysis utilizing transmission FTIR. Biophys J 2004;85:2476-83. [PMID: 14507710 PMCID: PMC1303471 DOI: 10.1016/s0006-3495(03)74670-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
30
Marsh D. Infrared Dichroism of Isotope-edited α-Helices and β-Sheets. J Mol Biol 2004;338:353-67. [PMID: 15066437 DOI: 10.1016/j.jmb.2004.02.061] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2003] [Revised: 02/23/2004] [Accepted: 02/24/2004] [Indexed: 10/26/2022]
31
Kochva U, Leonov H, Arkin IT, Adams PD. Modeling Membrane Proteins Utilizing Information from Silent Amino Acid Substitutions. ACTA ACUST UNITED AC 2004;Chapter 5:Unit5.3. [DOI: 10.1002/0471250953.bi0503s04] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
32
Torres J, Stevens TJ, Samsó M. Membrane proteins: the 'Wild West' of structural biology. Trends Biochem Sci 2003;28:137-44. [PMID: 12633993 DOI: 10.1016/s0968-0004(03)00026-4] [Citation(s) in RCA: 106] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
33
Arkin IT. Structural aspects of oligomerization taking place between the transmembrane alpha-helices of bitopic membrane proteins. BIOCHIMICA ET BIOPHYSICA ACTA 2002;1565:347-63. [PMID: 12409206 DOI: 10.1016/s0005-2736(02)00580-1] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
34
Torres J, Briggs JAG, Arkin IT. Convergence of experimental, computational and evolutionary approaches predicts the presence of a tetrameric form for CD3-zeta. J Mol Biol 2002;316:375-84. [PMID: 11851345 DOI: 10.1006/jmbi.2001.5268] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
PrevPage 1 of 1 1Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA