Nitrate and Nitrogen Oxides: Sources, Health Effects and Their Remediation

Nitric oxide synthase expression in Pseudomonas koreensis MME3 improves plant growth promotion traits

The development of novel biotechnologies that promote a better use of N to optimize crop yield is a central goal for sustainable agriculture. Phytostimulation, biofertilization, and bioprotection through the use of bio-inputs are promising technologies for this purpose. In this study, the plant growth-promoting rhizobacteria Pseudomonas koreensis MME3 was genetically modified to express a nitric oxide synthase of Synechococcus SyNOS, an atypical enzyme with a globin domain that converts nitric oxide to nitrate. A cassette for constitutive expression of synos was introduced as a single insertion into the genome of P. koreensis MME3 using a miniTn7 system. The resulting recombinant strain MME3:SyNOS showed improved growth, motility, and biofilm formation. The impact of MME3:SyNOS inoculation on Brachypodium distachyon growth and N uptake and use efficiencies under different N availability situations was analyzed, in comparison to the control strain MME3:c. After 35 days of inoculation, plants treated with MME3:SyNOS had a higher root dry weight, both under semi-hydroponic and greenhouse conditions. At harvest, both MME3:SyNOS and MME3:c increased N uptake and use efficiency of plants grown under low N soil. Our results indicate that synos expression is a valid strategy to boost the phytostimulatory capacity of plant-associated bacteria and improve the adaptability of plants to N deficiency. KEY POINTS: • synos expression improves P. koreensis MME3 traits important for rhizospheric colonization • B. distachyon inoculated with MME3:SyNOS shows improved root growth • MME3 inoculation improves plant N uptake and use efficiencies in N-deficient soil.

Air Pollution and Lung Cancer: Contributions of Extracellular Vesicles as Pathogenic Mechanisms and Clinical Utility

PURPOSE OF REVIEW

This review addresses the pressing issue of air pollution's threat to human health, focusing on its connection to non-small cell lung cancer (NSCLC) development. The aim is to explore the role of extracellular vesicles (EVs) as potential pathogenic mechanisms in lung cancer, including NSCLC, induced by air pollutants.

RECENT FINDINGS

Recent research highlights EVs as vital mediators of intercellular communication and key contributors to cancer progression. Notably, this review emphasizes the cargo of EVs released by both cancerous and non-cancerous lung cells, shedding light on their potential role in promoting various aspects of tumor development. The review underscores the importance of comprehending the intricate interplay between air pollution, biological damage mechanisms, and EV-mediated communication during NSCLC development. Major takeaways emphasize the significance of this understanding in addressing air pollution-related lung cancer. Future research avenues are also highlighted, aiming to enhance the applicability of EVs for diagnosis and targeted therapies, ultimately mitigating the inevitable impact of air pollution on NSCLC development and treatment.

Pollutants in aquatic system: a frontier perspective of emerging threat and strategies to solve the crisis for safe drinking water

Water is an indispensable natural resource and is the most vital substance for the existence of life on earth. However, due to anthropogenic activities, it is being polluted at an alarming rate which has led to serious concern about water shortage across the world. Moreover, toxic contaminants released into water bodies from various industrial and domestic activities negatively affect aquatic and terrestrial organisms and cause serious diseases such as cancer, renal problems, gastroenteritis, diarrhea, and nausea in humans. Therefore, water treatments that can eliminate toxins are very crucial. Unfortunately, pollution treatment remains a difficulty when four broad considerations are taken into account: effectiveness, reusability, environmental friendliness, and affordability. In this situation, protecting water from contamination or creating affordable remedial techniques has become a serious issue. Although traditional wastewater treatment technologies have existed since antiquity, they are both expensive and inefficient. Nowadays, advanced sustainable technical approaches are being created to replace traditional wastewater treatment processes. The present study reviews the sources, toxicity, and possible remediation techniques of the water contaminants.

Automated versus Chemically Intuitive Deconvolution of Density Functional Theory (DFT)-Based Gas-Phase Errors in Nitrogen Compounds

Catalysis models involving metal surfaces and gases are regularly based on density functional theory (DFT) calculations at the generalized gradient approximation (GGA). Such models may have large errors in view of the poor DFT-GGA description of gas-phase molecules with multiple bonds. Here, we analyze three correction schemes for the PBE-calculated Gibbs energies of formation of 13 nitrogen compounds. The first scheme is sequential and based on chemical intuition, the second one is an automated optimization based on chemical bonds, and the third one is an automated optimization that capitalizes on the errors found by the first scheme. The mean and maximum absolute errors are brought down close to chemical accuracy by the third approach by correcting the inaccuracies in the NNO and ONO backbones and those in N–O and N–N bonds. This work shows that chemical intuition and automated optimization can be combined to swiftly enhance the predictiveness of DFT-GGA calculations of gases.

Recent trends in nitrogen cycle and eco-efficient nitrogen management strategies in aerobic rice system

Rice (Oryza sativa L.) is considered as a staple food for more than half of the global population, and sustaining productivity under a scarcity of resources is challenging to meet the future food demands of the inflating global population. The aerobic rice system can be considered as a transformational replacement for traditional rice, but the widespread adaptation of this innovative approach has been challenged due to higher losses of nitrogen (N) and reduced N-use efficiency (NUE). For normal growth and developmental processes in crop plants, N is required in higher amounts. N is a mineral nutrient and an important constituent of amino acids, nucleic acids, and many photosynthetic metabolites, and hence is essential for normal plant growth and metabolism. Excessive application of N fertilizers improves aerobic rice growth and yield, but compromises economic and environmental sustainability. Irregular and uncontrolled use of N fertilizers have elevated several environmental issues linked to higher N losses in the form of nitrous oxide (N2O), ammonia (NH3), and nitrate (NO3 -), thereby threatening environmental sustainability due to higher warming potential, ozone depletion capacities, and abilities to eutrophicate the water resources. Hence, enhancing NUE in aerobic rice has become an urgent need for the development of a sustainable production system. This article was designed to investigate the major challenge of low NUE and evaluate recent advances in pathways of the N cycle under the aerobic rice system, and thereby suggest the agronomic management approaches to improve NUE. The major objective of this review is about optimizing the application of N inputs while sustaining rice productivity and ensuring environmental safety. This review elaborates that different soil conditions significantly shift the N dynamics via changes in major pathways of the N cycle and comprehensively reviews the facts why N losses are high under the aerobic rice system, which factors hinder in attaining high NUE, and how it can become an eco-efficient production system through agronomic managements. Moreover, it explores the interactive mechanisms of how proper management of N cycle pathways can be accomplished via optimized N fertilizer amendments. Meanwhile, this study suggests several agricultural and agronomic approaches, such as site-specific N management, integrated nutrient management (INM), and incorporation of N fertilizers with enhanced use efficiency that may interactively improve the NUE and thereby plant N uptake in the aerobic rice system. Additionally, resource conservation practices, such as plant residue management, green manuring, improved genetic breeding, and precision farming, are essential to enhance NUE. Deep insights into the recent advances in the pathways of the N cycle under the aerobic rice system necessarily suggest the incorporation of the suggested agronomic adjustments to reduce N losses and enhance NUE while sustaining rice productivity and environmental safety. Future research on N dynamics is encouraged under the aerobic rice system focusing on the interactive evaluation of shifts among activities and diversity in microbial communities, NUE, and plant demands while applying N management measures, which is necessary for its widespread adaptation in face of the projected climate change and scarcity of resources.

Nutrient and Nitrate Composition of Greenhouse-Grown Leafy Greens: A Trial Comparison Between Conventional and Organic Fertility Treatments

Arugula (Eruca sativa), mizuna (Brassica rapa var. nipponsinca), red giant mustard (Brassica juncea), and spinach (Spinaciaoleracea “Tyee”) are fresh produce crops high in nutritive value that provide shortfall and high interest nutrients addressed in the U.S. Dietary Guidelines. The primary objective of this project was to evaluate fertility treatments unique to these crops that optimize their nutritional capacity. Measurements discussed include: vitamin C, dietary fiber, calcium, iron, potassium, sodium, and nitrate. Plants were grown at the University of Minnesota St. Paul Campus (St. Paul, MN) in a greenhouse from November to April under an 18 h photoperiod and a 24/13°C day/night temperature. Plants were grown using five different fertility treatments, including four organic treatments and one conventional control. The plant treatment combinations were replicated three times and the entire experiment was duplicated. Fertility treatments had a high impact on vitamin C (with over a 3-fold difference in treatments in the first experiment), nitrate (over 10-fold difference among fertility treatments in some species) and potassium concentrations (over 5-fold difference among fertility treatments in some species) in analyzed plant tissue. No consistent differences were found for fiber, calcium, iron and sodium concentrations in tissue analyzed. This is the first study to analyze the impact that different organic treatments can have on multiple nutrients and compounds addressed by the U.S. Dietary Guidelines for high-impact, highly-consumed produce crops.

Strong Precipitation and Human Activity Spur Rapid Nitrate Deposition in Estuarine Delta: Multi-Isotope and Auxiliary Data Evidence

The intensive development of the Yellow River Delta has caused huge transportation of non-point pollutants into the Bohai Sea through source river estuaries and thus poses a considerable threat to eco-environmental security in the region. Long-term irrigation in the Yellow River basin, with occasional heavy rainfall and the related effects of ensuring hydrological processes and human activities in terms of nitrate N transport via surface water systems, is unclear. Using stable isotope (δ2H-H2O and δ18O-H2O, δ15N-NO3− and δ18O-NO3−) and auxiliary geographic data, the ISO source model was run to quantitatively analyze the supply relationship of river systems and the rapid change in the spatial pattern of nitrate N due to heavy rainfall in the estuarine delta. This analysis made clear the dominant contribution of agricultural activities and urbanization to NO3−-N emission, on which basis refined management measures were proposed to deal with NO3− in surface water from the “source-process”. The results of the study show that: (1) The relationship of surface water replenishment in the Yellow River Delta was affected not only by rainfall, irrigation, and other water conservancy measures but also the proportion of water from Yellow River flow declined from the source to estuary; (2) To a certain extent, rainfall diluted the concentration of nitrate N in the river and increased instantaneous flux of nitrate N into the sea, where nitrate N flux continuously increased from upstream to downstream; (3) The rapid deposition of nitrate in the estuary delta was driven by heavy rainfall and human activities such as excessive use of nitrogen fertilizers, rapid urbanization, and livestock waste discharge, and; (4) Scientific measures were needed to realize the interactive effect of the output of non-point source pollutants and the carrying and absorption capacity of coastal fragile ecosystems of the exogenous inputs.

Nitrogen Fixing Azotobacter Species as Potential Soil Biological Enhancers for Crop Nutrition and Yield Stability

Biological nitrogen fixation (BNF) refers to a microbial mediated process based upon an enzymatic "Nitrogenase" conversion of atmospheric nitrogen (N₂) into ammonium readily absorbable by roots. N₂-fixing microorganisms collectively termed as "diazotrophs" are able to fix biologically N₂ in association with plant roots. Specifically, the symbiotic rhizobacteria induce structural and physiological modifications of bacterial cells and plant roots into specialized structures called nodules. Other N₂-fixing bacteria are free-living fixers that are highly diverse and globally widespread in cropland. They represent key natural source of nitrogen (N) in natural and agricultural ecosystems lacking symbiotic N fixation (SNF). In this review, the importance of Azotobacter species was highlighted as both important free-living N₂-fixing bacteria and potential bacterial biofertilizer with proven efficacy for plant nutrition and biological soil fertility. In addition, we described Azotobacter beneficial plant promoting traits (e.g., nutrient use efficiency, protection against phytopathogens, phytohormone biosynthesis, etc.). We shed light also on the agronomic features of Azotobacter that are likely an effective component of integrated plant nutrition strategy, which contributes positively to sustainable agricultural production. We pointed out Azotobacter based-biofertilizers, which possess unique characteristics such as cyst formation conferring resistance to environmental stresses. Such beneficial traits can be explored profoundly for the utmost aim to research and develop specific formulations based on inoculant Azotobacter cysts. Furthermore, Azotobacter species still need to be wisely exploited in order to address specific agricultural challenges (e.g., nutrient deficiencies, biotic and abiotic constraints) taking into consideration several variables including their biological functions, synergies and multi-trophic interactions, and biogeography and abundance distribution.

Azotobacter: A potential bio-fertilizer for soil and plant health management

Stressor (biotic as well as abiotic) generally hijack the plant growth and yield characters in hostile environment leading to poor germination of the plants and yield. Among the plant growth promoting rhizobacteria, Azotobacter spp. (Gram-negative prokaryote) are considered to improve the plant health. Various mechanisms are implicated behind improved plant health in Azotobacter spp. inoculated plants. For example, acceleration of phytohormone like Indole-3-Acetic Acid production, obviation of various stressors, nitrogen fixation, pesticides and oil globules degradation, heavy metals metabolization, etc. are the key characteristics of Azotobacter spp. action. In addition, application of this bacteria has also become helpful in the reclamation of soil suggesting to be a putative agent which can be used in the transformation of virgin land to fertile one. Application of pesticides of chemical origin are being put on suspension mode as the related awareness program is still on. As far as the limitations of this microbe is concerned, commercial level formulations availability is still a great menace. Present review has been aimed to appraise the researchers pertaining to utility of Azotobacter spp. in the amelioration of plant health in sustainable agroecosystem. The article has been written with the target to gather maximum information into single pot so that it could reach to the dedicated researchers.

Microorganisms and Their Metabolic Capabilities in the Context of the Biogeochemical Nitrogen Cycle at Extreme Environments

Extreme microorganisms (extremophile) are organisms that inhabit environments characterized by inhospitable parameters for most live beings (extreme temperatures and pH values, high or low ionic strength, pressure, or scarcity of nutrients). To grow optimally under these conditions, extremophiles have evolved molecular adaptations affecting their physiology, metabolism, cell signaling, etc. Due to their peculiarities in terms of physiology and metabolism, they have become good models for (i) understanding the limits of life on Earth, (ii) exploring the possible existence of extraterrestrial life (Astrobiology), or (iii) to look for potential applications in biotechnology. Recent research has revealed that extremophilic microbes play key roles in all biogeochemical cycles on Earth. Nitrogen cycle (N-cycle) is one of the most important biogeochemical cycles in nature; thanks to it, nitrogen is converted into multiple chemical forms, which circulate among atmospheric, terrestrial and aquatic ecosystems. This review summarizes recent knowledge on the role of extreme microorganisms in the N-cycle in extremophilic ecosystems, with special emphasis on members of the Archaea domain. Potential implications of these microbes in global warming and nitrogen balance, as well as their biotechnological applications are also discussed.

Enhanced nitrate removal from surface water in a denitrifying woodchip bioreactor with a heterotrophic nitrifying and aerobic denitrifying fungus

A heterotrophic nitrifying and aerobic denitrifying fungus was isolated from lake water and identified as Penicillium tropicum strain IS0293. The strain exhibited efficient heterotrophic nitrification-aerobic denitrification ability and could utilize ammonium, nitrite and nitrate as a sole nitrogen source. Batch tests demonstrated that strain IS0293 can remove nitrate using variety of organic carbon compounds as carbon sources. The effect of woodchip leachate collected at different degradation times on denitrification performance of the strain was also investigated. Furthermore, two denitrifying woodchip bioreactors were constructed to assess the bioaugmention of strain IS0293 for nitrate removal from surface water. Results demonstrated that the incubation of strain IS0293 enhanced the nitrate removal efficiency of the bioreactor. In addition, the average effluent TOC content of the bioaugmention bioreactor was 38.22% lower than the control bioreactor. This study would be valuable to develop an effective technology for nitrate-laden surface water under aerobic conditions.

Comparative Adsorptive Removal of Phosphate and Nitrate from Wastewater Using Biochar-MgAl LDH Nanocomposites: Coexisting Anions Effect and Mechanistic Studies

In this study, date-palm biochar MgAl-augmented double-layered hydroxide (biochar-MgAl-LDH) nanocomposite was synthesized, characterized, and used for enhancing the removal of phosphate and nitrate pollutants from wastewater. The biochar-MgAl-LDH had higher selectivity and adsorption affinity towards phosphate compared to nitrate. The adsorption kinetics of both anions were better explained by the pseudo-first-order model with a faster removal rate to attain equilibrium in a shorter time, especially at lower initial phosphate-nitrate concentration. The maximum monolayer adsorption capacities of phosphate and nitrate by the non-linear Langmuir model were 177.97 mg/g and 28.06 mg/g, respectively. The coexistence of anions (Cl-, SO42-, NO3-, CO32- and HCO3-) negligibly affected the removal of phosphate due to its stronger bond on the nano-composites, while the presence of Cl- and PO43- reduced the nitrate removal attributed to the ions' participation in the active adsorption sites on the surface of biochar-MgAl-LDH. The excellent adsorptive performance is the main synergetic influence of the MgAl-LDH incorporation into the biochar. The regeneration tests confirmed that the biochar-MgAl composite can be restored effortlessly and has the prospective to be reused after several subsequent adsorption-desorption cycles. The biochar-LDH further demonstrated capabilities for higher removal of phosphate and nitrate from real wastewater.

Behavior of Nitrate-Nitrogen and Nitrite-Nitrogen in Drinking Water

Nitrate-nitrogen (NO₃-N) and nitrite-nitrogen (NO₂-N) are constituents of the nitrogen cycle. NO₃-N is toxic to humans, primarily due to its reduction to NO₂-N. In Japan, NO₃-N and NO₂-N levels in tap water must not exceed 10 mg/L and only NO₂-N alone not 0.04 mg/L, respectively. In this study, we verified the effect of microorganisms and ultraviolet (UV) to increase of NO₂-N in water. First, all tested drinking-waters including tap water and commercial mineral water in PET bottles had < 2 mg/L NO₃-N and undetectable levels (< 0.01 mg/L) of NO₂-N. However, we found that NO₂-N was generated in tap water left to stand at room temperature for several days, leading to increases in CF and TC counts and reduction of NO₃-N. We also demonstrated that direct UV and sunlight irradiation of NO₃-N-containing drinking water generated NO₂-N in 1-2 h, with NO₂-N reaching > 0.04 mg/mL by 4-6 h. On the other hand, NO₃-N and NO₂-N were undetectable in commercially purified water.

Multi-sensor temporal assessment of tropospheric nitrogen dioxide column densities over Pakistan

Spatial and temporal distributions of tropospheric NO₂ vertical column densities over Pakistan during the period 2002-2014 are discussed. Data products from three satellite instruments SCIAMACHY, OMI, and GOME-2 are used to prepare a database of tropospheric NO₂ column densities over Pakistan and temporal evolution is also determined. Plausible NO₂ sources in Pakistan are also discussed. The results show a large NO₂ growth over all provinces and the major cities of Pakistan except the megacity of Karachi. Decline in industrial activities due to energy crises, worsening law and order situation, terrorist attacks, and political instability was explored as the main factor for lower NO₂ VCDs over Karachi City. The overall increase can be attributed to the anthropogenic emissions over the areas with high population, traffic density, and industrial activities. Source identification revealed that use of fossil fuels by various sectors including power generation, vehicles, and residential sectors along with agriculture fires are among significant sources of NO₂ emissions in Pakistan. Existing emission inventories such as EDGARv4.2 and MACCity largely underestimate the true anthropogenic NO_x emissions in Pakistan. This study may provide vital information to policy makers and regulatory authorities in developing countries, including Pakistan, in order to devise effective air pollution abatement policies.