Structural stability, microbial biomass and community composition of sediments affected by the hydric dynamics of an urban stormwater infiltration basin. Dynamics of physical and microbial characteristics of stormwater sediment

Saccharomyces cerevisiae inactivation during water disinfection by underwater plasma bubbles: Preferential reactive species production and subcellular mechanisms

The escalating challenges posed by water resource contamination, especially exacerbated by health concerns associated with microbial fungi threats, necessitate advanced disinfection technologies. Within this context, non-thermal plasma generated within bubble column reactors emerges as a promising antifungal strategy. The effects of direct plasma bubbles within different discharge modes and thus-produced plasma activated water (PAW) on the inactivation of Saccharomyces cerevisiae are investigated. Results show that plasma bubbles generated by dielectric barrier discharge (DBD) mode can effectively inactivate yeast cells (∼4.44 logs reduction) within 1 min, outperforming the spark discharge (SD). In this case, SD can cause a significant portion of cell necrosis, possibly due to the high electric field at the bubble interface. In PAW, DBD and SD produce different dominant long-lived oxygen and nitrogen species, while the crucial short-lived species in yeast apoptosis are both attributed to the singlet oxygen (1O2) as confirmed by scavenger tests. The detection of intracellular reactive oxygen species and antioxidant enzymes further illustrates the role of PAW in triggering apoptosis. Overall, this study demonstrates the discharge mode-dependent modulation of reactive species chemistry in plasma-liquid interactions and provides new insights into the subcellular mechanism of plasma-enabled yeast inactivation for water resource decontamination.

Fungi and cercozoa regulate methane-associated prokaryotes in wetland methane emissions

Wetlands are natural sources of methane (CH4) emissions, providing the largest contribution to the atmospheric CH4 pool. Changes in the ecohydrological environment of coastal salt marshes, especially the surface inundation level, cause instability in the CH4 emission levels of coastal ecosystems. Although soil methane-associated microorganisms play key roles in both CH4 generation and metabolism, how other microorganisms regulate methane emission and their responses to inundation has not been investigated. Here, we studied the responses of prokaryotic, fungal and cercozoan communities following 5 years of inundation treatments in a wetland experimental site, and molecular ecological networks analysis (MENs) was constructed to characterize the interdomain relationship. The result showed that the degree of inundation significantly altered the CH4 emissions, and the abundance of the pmoA gene for methanotrophs shifted more significantly than the mcrA gene for methanogens, and they both showed significant positive correlations to methane flux. Additionally, we found inundation significantly altered the diversity of the prokaryotic and fungal communities, as well as the composition of key species in interactions within prokaryotic, fungal, and cercozoan communities. Mantel tests indicated that the structure of the three communities showed significant correlations to methane emissions (p < 0.05), suggesting that all three microbial communities directly or indirectly contributed to the methane emissions of this ecosystem. Correspondingly, the interdomain networks among microbial communities revealed that methane-associated prokaryotic and cercozoan OTUs were all keystone taxa. Methane-associated OTUs were more likely to interact in pairs and correlated negatively with the fungal and cercozoan communities. In addition, the modules significantly positively correlated with methane flux were affected by environmental stress (i.e., pH) and soil nutrients (i.e., total nitrogen, total phosphorus and organic matter), suggesting that these factors tend to positively regulate methane flux by regulating microbial relationships under inundation. Our findings demonstrated that the inundation altered microbial communities in coastal wetlands, and the fungal and cercozoan communities played vital roles in regulating methane emission through microbial interactions with the methane-associated community.

Inorganic Nitrogen Production and Removal along the Sediment Gradient of a Stormwater Infiltration Basin

Stormwater infiltration basins (SIBs) are vegetated depressions that collect stormwater and allow it to infiltrate to underlying groundwater. Their pollutant removal efficiency is affected by the properties of the soils in which they are constructed. We assessed the soil nitrogen (N) cycle processes that produce and remove inorganic N in two urban SIBs, with the goal of further understanding the mechanisms that control N removal efficiency. We measured net N mineralization, nitrification, and potential denitrification in wet and dry seasons along a sedimentation gradient in two SIBs in the subtropical Tampa, Florida urban area. Net N mineralization was higher in the wet season than in the dry season; however, nitrification was higher in the dry season, providing a pool of highly mobile nitrate that would be susceptible to leaching during periodic dry season storms or with the onset of the following wet season. Denitrification decreased along the sediment gradient from the runoff inlet zone (up to 5.2 μg N/g h) to the outermost zone (up to 3.5 μg N/g h), providing significant spatial variation in inorganic N removal for the SIBs. Sediment accumulating around the inflow areas likely provided a carbon source, as well as maintained stable anaerobic conditions, which would enhance N removal.

Microbial risk assessment of Nocardia cyriacigeorgica in polluted environments, case of urban rainfall water

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Urban infiltration basins are a reservoir of a high diversity of Nocardia encompassing both pathogenic and not-pathogenic species.

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Relative abundance of pathogenic Nocardia species presents a positive correlation with metal trace elements.

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High infraspecific variability within N. cyriacigeorgica, forming three phylogroups.

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Environmental N. cyriacigeorgica strains may be as virulent as clinical GUH-2 strain.

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hsp65 marker can be used by metabarcoding approach for assessment of environmental Nocardia biodiversity.

Urban Infiltration Basins (UIBs) are used to manage urban runoff transfers and feed aquifers. These UIBs can accumulate urban pollutants and favor the growth of potentially pathogenic biological agents as Nocardia.

Objectives

To assess the spatio-temporal dynamics of pathogenic Nocardia in UIBs and to stablish phylogenetic relationships between clinical and UIB N. cyriacigeorgica strains. To assess pathogenicity associated with environmental N. cyriacigeorgica using an animal model, and to identify genetic elements that may be associated to its virulence.

Methods

A well-characterized UIB in terms of chemical pollutants from Lyon area was used in this study during a whole year. Cultural and Next-Generation-Sequencing methods were used for Nocardia detection and typing. Clinical and environmental isolates phylogenetic relationships and virulences were compared with Multilocus-Sequence-Analysis study together with a murine model.

Results

In autumn, N. cyriacigeorgica and N. nova were the pathogenic most prevalent species in the UIB. The complex N. abscessus/asiatica was also detected together with some other non-pathogenic species. The presence of pathogenic Nocardia was positively correlated to metallic trace elements. Up to 1.0 × 10³ CFU/g sediment of N. cyriacigeorgica and 6 OTUs splited in two different phylogroups were retrieved and were close to clinical strains. The EML446 tested UIB isolate showed significant infectivity in mice with pulmonary damages similar to clinical clone (GUH-2).

Conclusion

Hsp65 marker-based metabarcoding approach allowed detecting N. cyriacigeogica as the most abundant Nocardia pathogenic species in a UIB. Metal trace elements-polluted environments can be reservoirs of pathogenic Nocardia which may have a similar virulence to clinical strains.

Spatial distribution of bacterial communities driven by multiple environmental factors in a beach wetland of the largest freshwater lake in China

The spatial distributions of bacterial communities may be driven by multiple environmental factors. Thus, understanding the relationships between bacterial distribution and environmental factors is critical for understanding wetland stability and the functioning of freshwater lakes. However, little research on the bacterial communities in deep sediment layers exists. In this study, thirty clone libraries of 16S rRNA were constructed from a beach wetland of the Poyang Lake along both horizontal (distance to the water-land junction) and vertical (sediment depth) gradients to assess the effects of sediment properties on bacterial community structure and diversity. Our results showed that bacterial diversity increased along the horizontal gradient and decreased along the vertical gradient. The heterogeneous sediment properties along gradients substantially affected the dominant bacterial groups at the phylum and species levels. For example, the NH⁺₄ concentration decreased with increasing depth, which was positively correlated with the relative abundance of Alphaproteobacteria. The changes in bacterial diversity and dominant bacterial groups showed that the top layer had a different bacterial community structure than the deeper layers. Principal component analysis revealed that both gradients, not each gradient independently, contributed to the shift in the bacterial community structure. A multiple linear regression model explained the changes in bacterial diversity and richness along the depth and distance gradients. Overall, our results suggest that spatial gradients associated with sediment properties shaped the bacterial communities in the Poyang Lake beach wetland.

Urban microbial ecology of a freshwater estuary of Lake Michigan

Freshwater estuaries throughout the Great Lakes region receive stormwater runoff and riverine inputs from heavily urbanized population centers. While human and animal feces contained in this runoff are often the focus of source tracking investigations, non-fecal bacterial loads from soil, aerosols, urban infrastructure, and other sources are also transported to estuaries and lakes. We quantified and characterized this non-fecal urban microbial component using bacterial 16S rRNA gene sequences from sewage, stormwater, rivers, harbor/estuary, and the lake surrounding Milwaukee, WI, USA. Bacterial communities from each of these environments had a distinctive composition, but some community members were shared among environments. We used a statistical biomarker discovery tool to identify the components of the microbial community that were most strongly associated with stormwater and sewage to describe an "urban microbial signature," and measured the presence and relative abundance of these organisms in the rivers, estuary, and lake. This urban signature increased in magnitude in the estuary and harbor with increasing rainfall levels, and was more apparent in lake samples with closest proximity to the Milwaukee estuary. The dominant bacterial taxa in the urban signature were Acinetobacter, Aeromonas, and Pseudomonas, which are organisms associated with pipe infrastructure and soil and not typically found in pelagic freshwater environments. These taxa were highly abundant in stormwater and sewage, but sewage also contained a high abundance of Arcobacter and Trichococcus that appeared in lower abundance in stormwater outfalls and in trace amounts in aquatic environments. Urban signature organisms comprised 1.7% of estuary and harbor communities under baseflow conditions, 3.5% after rain, and >10% after a combined sewer overflow. With predicted increases in urbanization across the Great Lakes, further alteration of freshwater communities is likely to occur with potential long term impacts on the function of estuarine and nearshore ecosystems.

Influence of spontaneous vegetation in stormwater infiltration system clogging

The paper presents the role of spontaneous vegetation on the hydraulic performance of an infiltration basin. The objective of the research was more particularly to study this role of different types of spontaneous vegetation found in situ in an infiltration basin near Lyon. The saturated hydraulic conductivity of three areas covered by Phalaris arundinacea, Polygonum mite, Rumex crispus and similar non-vegetated zones was compared. Eight field campaigns were carried out from July 2010 to May 2011 in order to compare the performance of each type of vegetation and its evolution over time. The results suggest a positive impact of vegetation on hydraulic performance in particular in summer during the growth of the plants. The hydraulic conductivity in this period was twice to four times higher than in bare areas or in vegetated zones during the plant rest periods. Some species were also found more appropriate to limit clogging (Phalaris arundinacea) likely due to its specific structure and growth process.

Assessment of existing roadside swales with engineered filter soil: I. Characterization and lifetime expectancy

Roadside infiltration swales with well-defined soil mixtures (filter soil) for the enhancement of both infiltration and treatment of stormwater runoff from roads and parking areas have been common practice in Germany for approximately two decades. Although the systems have proven hydraulically effective, their treatment efficiency and thus lifetime expectancies are not sufficiently documented. The lack of documentation restricts the implementation of new such systems in Germany as well as other countries. This study provides an assessment of eight roadside infiltration swales with filter soil from different locations in Germany that have been operational for 6 to16 yr. The swales were assessed with respect to visual appearance, infiltration rate, soil pH, and soil texture, as well as soil concentration of organic matter, heavy metals (Cd, Cr, Cu, Pb, Zn), and phosphorus. Visually, the swales appeared highly variable with respect to soil color and textural layering as well as composition of plants and soil-dwelling organisms. Three swales still comply with the German design criteria for infiltration rate (10 m/s), while the remaining swales have lower, yet acceptable, infiltration rates around 10 m/s. Six of the eight studied soils have heavy metal concentrations exceeding the limit value for unpolluted soil. Provided that the systems are able to continuously retain existing and incoming pollutants, our analysis indicates that the soils can remain operational for another 13 to 136 yr if the German limit values for unrestricted usage in open construction works are applied. However, no official guidelines exist for acceptable soil quality in existing infiltration facilities.

Spatial heterogeneity of bacterial communities in sediments from an infiltration basin receiving highway runoff

The bacterial community diversity of highway runoff-contaminated sediment that had undergone 19 years of acetate-based de-icing agents addition followed by three years of acetate-free de-icing agents was investigated. Analysis of 26 sediment samples from two drilled soil cores by means of 16S rDNA PCR generated 3,402 clones, indicating an overall high bacterial diversity, with no prominent members within the communities. Sequence analyses provided evidences that each sediment sample displayed a specific structure bacterial community. Proteobacteria-affiliated clones (58% and 43% for the two boreholes) predominated in all samples, followed by Actinobacteria (12% and 16%), Firmicutes (7% and 12%) and Chloroflexi (7% and 11%). The subsurface geochemistry complemented the molecular methods to further distinguish ambient and contaminant plume zones. Principal component analysis revealed that the levels of Fe(II) and dissolved oxygen were strongly correlated with bacterial communities. At elevated Fe(II) levels, sequences associated with anaerobic bacteria were detected in high levels. As iron levels declined and oxygen levels increased below the plume bottom, there was a gradual shift in the community structure toward the increase of aerobic bacteria.