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For: Ramli ANM, Mahadi NM, Shamsir MS, Rabu A, Joyce-Tan KH, Murad AMA, Illias RM. Structural prediction of a novel chitinase from the psychrophilic Glaciozyma antarctica PI12 and an analysis of its structural properties and function. J Comput Aided Mol Des 2012;26:947-61. [DOI: 10.1007/s10822-012-9585-7] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2011] [Accepted: 06/04/2012] [Indexed: 12/29/2022]
Number Cited by Other Article(s)
1
Matinja AI, Kamarudin NHA, Leow ATC, Oslan SN, Ali MSM. Structural Insights into Cold-Active Lipase from Glaciozyma antarctica PI12: Alphafold2 Prediction and Molecular Dynamics Simulation. J Mol Evol 2024;92:944-963. [PMID: 39549052 DOI: 10.1007/s00239-024-10219-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Accepted: 11/06/2024] [Indexed: 11/18/2024]
2
Gentilhomme A, Sweet C, Hennon GMM, Collins RE. Genomic signatures of cold adaptation in the family Colwelliaceae. Extremophiles 2024;28:39. [PMID: 39177827 DOI: 10.1007/s00792-024-01356-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Accepted: 08/12/2024] [Indexed: 08/24/2024]
3
Temperature and pH Profiling of Extracellular Amylase from Antarctic and Arctic Soil Microfungi. FERMENTATION-BASEL 2022. [DOI: 10.3390/fermentation8110601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
4
Salazar Alekseyeva K, Herndl GJ, Baltar F. Extracellular Enzymatic Activities of Oceanic Pelagic Fungal Strains and the Influence of Temperature. J Fungi (Basel) 2022;8:571. [PMID: 35736054 PMCID: PMC9225461 DOI: 10.3390/jof8060571] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Revised: 05/23/2022] [Accepted: 05/23/2022] [Indexed: 11/20/2022]  Open
5
Yusof NA, Hashim NHF, Bharudin I. Cold Adaptation Strategies and the Potential of Psychrophilic Enzymes from the Antarctic Yeast, Glaciozyma antarctica PI12. J Fungi (Basel) 2021;7:jof7070528. [PMID: 34209103 PMCID: PMC8306469 DOI: 10.3390/jof7070528] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Revised: 06/19/2021] [Accepted: 06/25/2021] [Indexed: 12/20/2022]  Open
6
Varrella S, Barone G, Tangherlini M, Rastelli E, Dell’Anno A, Corinaldesi C. Diversity, Ecological Role and Biotechnological Potential of Antarctic Marine Fungi. J Fungi (Basel) 2021;7:391. [PMID: 34067750 PMCID: PMC8157204 DOI: 10.3390/jof7050391] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Revised: 05/07/2021] [Accepted: 05/13/2021] [Indexed: 11/28/2022]  Open
7
Jaafar NR, Mahadi NM, Mackeen MM, Illias RM, Murad AMA, Abu Bakar FD. Structural and functional characterisation of a cold-active yet heat-tolerant dehydroquinase from Glaciozyma antarctica PI12. J Biotechnol 2021;329:118-127. [PMID: 33539893 DOI: 10.1016/j.jbiotec.2021.01.019] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Revised: 01/18/2021] [Accepted: 01/20/2021] [Indexed: 11/25/2022]
8
Pang WC, Ramli ANM, Hamid AAA. Comparative modelling studies of fruit bromelain using molecular dynamics simulation. J Mol Model 2020;26:142. [PMID: 32417971 DOI: 10.1007/s00894-020-04398-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Accepted: 04/28/2020] [Indexed: 12/25/2022]
9
Kohli I, Joshi NC, Mohapatra S, Varma A. Extremophile - An Adaptive Strategy for Extreme Conditions and Applications. Curr Genomics 2020;21:96-110. [PMID: 32655304 PMCID: PMC7324872 DOI: 10.2174/1389202921666200401105908] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Revised: 02/27/2020] [Accepted: 03/19/2020] [Indexed: 11/22/2022]  Open
10
Perini L, Gostinčar C, Gunde-Cimerman N. Fungal and bacterial diversity of Svalbard subglacial ice. Sci Rep 2019;9:20230. [PMID: 31882659 PMCID: PMC6934841 DOI: 10.1038/s41598-019-56290-5] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2019] [Accepted: 11/04/2019] [Indexed: 11/09/2022]  Open
11
A Novel Cold-Adapted and Salt-Tolerant RNase R from Antarctic Sea-Ice Bacterium Psychrobacter sp. ANT206. Molecules 2019;24:molecules24122229. [PMID: 31207974 PMCID: PMC6630635 DOI: 10.3390/molecules24122229] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Revised: 06/10/2019] [Accepted: 06/11/2019] [Indexed: 11/17/2022]  Open
12
Perini L, Gostinčar C, Anesio AM, Williamson C, Tranter M, Gunde-Cimerman N. Darkening of the Greenland Ice Sheet: Fungal Abundance and Diversity Are Associated With Algal Bloom. Front Microbiol 2019;10:557. [PMID: 30949152 PMCID: PMC6437116 DOI: 10.3389/fmicb.2019.00557] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2018] [Accepted: 03/04/2019] [Indexed: 01/16/2023]  Open
13
Hou Y, Qiao C, Wang Y, Wang Y, Ren X, Wei Q, Wang Q. Cold-Adapted Glutathione S-Transferases from Antarctic Psychrophilic Bacterium Halomonas sp. ANT108: Heterologous Expression, Characterization, and Oxidative Resistance. Mar Drugs 2019;17:md17030147. [PMID: 30832239 PMCID: PMC6471826 DOI: 10.3390/md17030147] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2019] [Revised: 02/20/2019] [Accepted: 02/25/2019] [Indexed: 12/29/2022]  Open
14
Yusof NA, Kamaruddin S, Abu Bakar FD, Mahadi NM, Abdul Murad AM. Structural and functional insights into TRiC chaperonin from a psychrophilic yeast, Glaciozyma antarctica. Cell Stress Chaperones 2019;24:351-368. [PMID: 30649671 PMCID: PMC6439030 DOI: 10.1007/s12192-019-00969-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2018] [Revised: 01/04/2019] [Accepted: 01/08/2019] [Indexed: 12/29/2022]  Open
15
Comparative structural analysis of fruit and stem bromelain from Ananas comosus. Food Chem 2018;266:183-191. [DOI: 10.1016/j.foodchem.2018.05.125] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2017] [Revised: 01/29/2018] [Accepted: 05/29/2018] [Indexed: 02/06/2023]
16
Ng ML, Rahmat ZB, Bin Omar MSS. Molecular Modeling and Simulation of Transketolase from Orthosiphon stamineus. Curr Comput Aided Drug Des 2018;15:308-317. [PMID: 30345923 DOI: 10.2174/1573409914666181022141753] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Revised: 08/21/2018] [Accepted: 10/17/2018] [Indexed: 11/22/2022]
17
Parvizpour S, Razmara J, Shamsir MS. Temperature adaptation analysis of a psychrophilic mannanase through structural, functional and molecular dynamics simulation. MOLECULAR SIMULATION 2018. [DOI: 10.1080/08927022.2018.1492721] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
18
Wang Y, Hou Y, Wang Y, Lu Z, Song C, Xu Y, Wei N, Wang Q. Cloning, expression and enzymatic characteristics of a 2-Cys peroxiredoxin from Antarctic sea-ice bacterium Psychrobacter sp. ANT206. Int J Biol Macromol 2018;129:1047-1055. [PMID: 30240713 DOI: 10.1016/j.ijbiomac.2018.09.103] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2018] [Revised: 09/15/2018] [Accepted: 09/17/2018] [Indexed: 02/07/2023]
19
Hashim NHF, Mahadi NM, Illias RM, Feroz SR, Abu Bakar FD, Murad AMA. Biochemical and structural characterization of a novel cold-active esterase-like protein from the psychrophilic yeast Glaciozyma antarctica. Extremophiles 2018;22:607-616. [DOI: 10.1007/s00792-018-1021-z] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2017] [Accepted: 03/11/2018] [Indexed: 02/04/2023]
20
Duarte AWF, Dos Santos JA, Vianna MV, Vieira JMF, Mallagutti VH, Inforsato FJ, Wentzel LCP, Lario LD, Rodrigues A, Pagnocca FC, Pessoa Junior A, Durães Sette L. Cold-adapted enzymes produced by fungi from terrestrial and marine Antarctic environments. Crit Rev Biotechnol 2017;38:600-619. [PMID: 29228814 DOI: 10.1080/07388551.2017.1379468] [Citation(s) in RCA: 77] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
21
Song YS, Seo DJ, Jung WJ. Identification, purification, and expression patterns of chitinase from psychrotolerant Pedobacter sp. PR-M6 and antifungal activity in vitro. Microb Pathog 2017;107:62-68. [PMID: 28330749 DOI: 10.1016/j.micpath.2017.03.018] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2017] [Revised: 02/28/2017] [Accepted: 03/13/2017] [Indexed: 11/17/2022]
22
Jaafar NR, Littler D, Beddoe T, Rossjohn J, Illias RM, Mahadi NM, Mackeen MM, Murad AMA, Abu Bakar FD. Crystal structure of fuculose aldolase from the Antarctic psychrophilic yeast Glaciozyma antarctica PI12. Acta Crystallogr F Struct Biol Commun 2016;72:831-839. [PMID: 27827354 PMCID: PMC5101584 DOI: 10.1107/s2053230x16015612] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2016] [Accepted: 10/04/2016] [Indexed: 11/11/2022]  Open
23
Parvizpour S, Razmara J, Shamsir MS, Illias RM, Abdul Murad AM. The role of alternative salt bridges in cold adaptation of a novel psychrophilic laminarinase. J Biomol Struct Dyn 2016;35:1685-1692. [PMID: 27206405 DOI: 10.1080/07391102.2016.1191043] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
24
Structure Prediction of a Novel Exo-β-1,3-Glucanase: Insights into the Cold Adaptation of Psychrophilic Yeast Glaciozyma antarctica PI12. Interdiscip Sci 2016;10:157-168. [PMID: 27475956 DOI: 10.1007/s12539-016-0180-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2016] [Revised: 07/19/2016] [Accepted: 07/20/2016] [Indexed: 10/21/2022]
25
Molecular cloning, expression and characterisation of Afp4, an antifreeze protein from Glaciozyma antarctica. Polar Biol 2014. [DOI: 10.1007/s00300-014-1539-1] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
26
Structural and functional analysis of a novel psychrophilic β-mannanase from Glaciozyma antarctica PI12. J Comput Aided Mol Des 2014;28:685-98. [PMID: 24849507 DOI: 10.1007/s10822-014-9751-1] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2014] [Accepted: 05/12/2014] [Indexed: 12/29/2022]
27
Maharana J, Patra MC, De BC, Sahoo BR, Behera BK, De S, Pradhan SK. Structural insights into the MDP binding and CARD-CARD interaction in zebrafish (Danio rerio) NOD2: a molecular dynamics approach. J Mol Recognit 2014;27:260-75. [DOI: 10.1002/jmr.2357] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2013] [Revised: 12/20/2013] [Accepted: 12/20/2013] [Indexed: 01/01/2023]
28
Ramli ANM, Azhar MA, Shamsir MS, Rabu A, Murad AMA, Mahadi NM, Illias RM. Sequence and structural investigation of a novel psychrophilic α-amylase from Glaciozyma antarctica PI12 for cold-adaptation analysis. J Mol Model 2013;19:3369-83. [PMID: 23686283 DOI: 10.1007/s00894-013-1861-5] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2013] [Accepted: 04/18/2013] [Indexed: 12/29/2022]
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