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Richardson JL, McCoy EP, Parlavecchio N, Szykowny R, Beech-Brown E, Buijs JA, Buckley J, Corrigan RM, Costa F, DeLaney R, Denny R, Helms L, Lee W, Murray MH, Riegel C, Souza FN, Ulrich J, Why A, Kiyokawa Y. Increasing rat numbers in cities are linked to climate warming, urbanization, and human population. SCIENCE ADVANCES 2025; 11:eads6782. [PMID: 39888984 PMCID: PMC11784805 DOI: 10.1126/sciadv.ads6782] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2024] [Accepted: 01/02/2025] [Indexed: 02/02/2025]
Abstract
Urban rats are commensal pests that thrive in cities by exploiting the resources accompanying large human populations. Identifying long-term trends in rat numbers and how they are shaped by environmental changes is critical for understanding their ecology, and projecting future vulnerabilities and mitigation needs. Here, we use public complaint and inspection data from 16 cities around the world to estimate trends in rat populations. Eleven of 16 cities (69%) had significant increasing trends in rat numbers, including Washington D.C., New York, and Amsterdam. Just three cities experienced declines. Cities experiencing greater temperature increases over time saw larger increases in rats. Cities with more dense human populations and more urbanization also saw larger increases in rats. Warming temperatures and more people living in cities may be expanding the seasonal activity periods and food availability for urban rats. Cities will have to integrate the biological impacts of these variables into future management strategies.
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Affiliation(s)
| | - Elizabeth P. McCoy
- Department of Biology, University of Richmond, 138 UR Drive, Richmond, VA 23173, USA
| | - Nicholas Parlavecchio
- Department of Biology, University of Richmond, 138 UR Drive, Richmond, VA 23173, USA
| | - Ryan Szykowny
- Department of Biology, University of Richmond, 138 UR Drive, Richmond, VA 23173, USA
| | - Eli Beech-Brown
- Department of Biology, University of Richmond, 138 UR Drive, Richmond, VA 23173, USA
| | - Jan A. Buijs
- Municipal Health Service, Amsterdam, Netherlands
| | | | | | - Federico Costa
- Instituto de Saúde Coletiva, Universidade Federal da Bahia, Salvador, Brazil
| | - Ray DeLaney
- City of Philadelphia, Department of Public Health, Environmental Health Services, PA, USA
| | - Rachel Denny
- New Orleans Mosquito, Termite, and Rodent Control Board, New Orleans, LA, USA
| | - Leah Helms
- Seattle/King County Solid Waste, Rodent, and Zoonotic Disease Program, Seattle, WA, USA
| | - Wade Lee
- Alameda County Department of Environmental Health, Alameda, CA, USA
| | | | - Claudia Riegel
- New Orleans Mosquito, Termite, and Rodent Control Board, New Orleans, LA, USA
| | - Fabio N. Souza
- Instituto de Saúde Coletiva, Universidade Federal da Bahia, Salvador, Brazil
| | - John Ulrich
- City of Boston, Department of Inspectional Services, Boston, MA, USA
| | - Adena Why
- Alameda County Department of Environmental Health, Alameda, CA, USA
| | - Yasushi Kiyokawa
- Laboratory of Veterinary Ethology, The University of Tokyo, Tokyo, Japan
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2
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Guiry E, Kennedy R, Orton D, Armitage P, Bratten J, Dagneau C, Dawdy S, deFrance S, Gaulton B, Givens D, Hall O, Laberge A, Lavin M, Miller H, Minkoff MF, Niculescu T, Noël S, Pavao-Zuckerman B, Stricker L, Teeter M, Welker M, Wilkoski J, Szpak P, Buckley M. The ratting of North America: A 350-year retrospective on Rattus species compositions and competition. SCIENCE ADVANCES 2024; 10:eadm6755. [PMID: 38569028 PMCID: PMC10990262 DOI: 10.1126/sciadv.adm6755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 02/27/2024] [Indexed: 04/05/2024]
Abstract
While the impacts of black (Rattus rattus) and brown (Rattus norvegicus) rats on human society are well documented-including the spread of disease, broad-scale environmental destruction, and billions spent annually on animal control-little is known about their ecology and behavior in urban areas due to the challenges of studying animals in city environments. We use isotopic and ZooMS analysis of archaeological (1550s-1900 CE) rat remains from eastern North America to provide a large-scale framework for species arrival, interspecific competition, and dietary ecology. Brown rats arrived earlier than expected and rapidly outcompeted black rats in coastal urban areas. This replacement happened despite evidence that the two species occupy different trophic positions. Findings include the earliest molecularly confirmed brown rat in the Americas and show a deep ecological structure to how rats exploit human-structured areas, with implications for understanding urban zoonosis, rat management, and ecosystem planning as well as broader themes of rat dispersal, phylogeny, evolutionary ecology, and climate impacts.
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Affiliation(s)
- Eric Guiry
- Department of Anthropology, Trent University, 1600 West Bank Dr., Peterborough, ON K9L 0G2, Canada
- School of Archaeology and Ancient History, University of Leicester, Mayor’s Walk, Leicester LE1 7RH, UK
| | - Ryan Kennedy
- Department of Anthropology, Indiana University Bloomington, 701 E. Kirkwood Ave., Bloomington, IN 47405, USA
| | - David Orton
- BioArCh, Department of Archaeology, University of York, Heslington, York YO10 5DD, UK
| | - Philip Armitage
- Independent researcher, 7 Park Court, Heath Road, Brixham TQ5 9AX, UK
| | - John Bratten
- Department of Anthropology, University of West Florida, 11000 University Pkwy, Pensacola, FL 32514, USA
| | - Charles Dagneau
- Underwater Archaeology Team, Parks Canada, 1800 Walkley, Ottawa, ON K1H8K3, Canada
| | - Shannon Dawdy
- Department of Anthropology, University of Chicago, 1126 E 59th St, Chicago, IL 60637, USA
| | - Susan deFrance
- Department of Anthropology, University of Florida, Gainesville, FL 32611, USA
| | - Barry Gaulton
- Department of Archaeology, Memorial University, Queen's College, 210 Prince Philip Dr., St. John's, NL A1B 3R6, Canada
| | - David Givens
- Jamestown Rediscovery/Preservation Virginia, 1365 Colonial Parkway, Jamestown, VA 23081, USA
| | - Olivia Hall
- Department of Anthropology, Trent University, 1600 West Bank Dr., Peterborough, ON K9L 0G2, Canada
| | - Anne Laberge
- Département des sciences historiques, Université Laval, 1030 avenue des Sciences-Humaines, Québec, QC G1V 0A6, Canada
| | - Michael Lavin
- Jamestown Rediscovery/Preservation Virginia, 1365 Colonial Parkway, Jamestown, VA 23081, USA
| | - Henry Miller
- Historic St. Mary's City, St. Mary's City, MD 20686, USA
| | - Mary F. Minkoff
- Florida Public Archaeology Network, 207 E Main St., Pensacola, FL 32502, USA
| | - Tatiana Niculescu
- Office of Historic Alexandria/Alexandria Archaeology, 105 North Union Street, #327, Alexandria, VA 22314, USA
| | - Stéphane Noël
- Ville de Quebec, Bureau de projet du tramway de Québec, 226-825 boul. Lebourgneuf, Québec, QC G2J 0B9, Canada
| | - Barnet Pavao-Zuckerman
- Department of Anthropology, University of Maryland, 4302 Chapel Lane, College Park, MD 20742, USA
| | - Leah Stricker
- Jamestown Rediscovery/Preservation Virginia, 1365 Colonial Parkway, Jamestown, VA 23081, USA
| | - Matt Teeter
- Department of Anthropology, Trent University, 1600 West Bank Dr., Peterborough, ON K9L 0G2, Canada
| | - Martin Welker
- Arizona State Museum, University of Arizona, 1013 E University Blvd. Tucson, AZ 85721, USA
- School of Anthropology, University of Arizona, 1009 E South Campus Dr., Tucson, AZ 85721, USA
| | - Jennifer Wilkoski
- Colonial Williamsburg Foundation, 401 W Duke of Gloucester St, Williamsburg, VA 23185, USA
| | - Paul Szpak
- Department of Anthropology, Trent University, 1600 West Bank Dr., Peterborough, ON K9L 0G2, Canada
| | - Michael Buckley
- Manchester Institute of Biotechnology, School of Natural Sciences, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK
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3
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Lekhal L, Harran E, Aragon A, Groud K, Le Guyader M, Kaidi R, Khelef D, Djelouadji Z. First Molecular Detection of Pathogens Leptospira in Common Rodent Captured in North Algeria Urban Areas. Trop Med Infect Dis 2022; 7:335. [PMID: 36355878 PMCID: PMC9693108 DOI: 10.3390/tropicalmed7110335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Revised: 10/14/2022] [Accepted: 10/27/2022] [Indexed: 09/10/2024] Open
Abstract
Leptospirosis is an anthropozoonosis disease of worldwide distribution caused by mobile spirochetes of the genus Leptospira and rodents, mainly rats, are described as its primary reservoir. In Algeria, there is limited data about the prevalence of Leptospira spp. in humans and animals, as well as Leptospira carriage in wild rodents. The study aimed to highlight the importance of rodents as a reservoir of Leptospira bacterium in Blida city in Algeria by detecting and identifying circulating Leptospira species in the rodent population. A total of 101 rodents, 95 Rattus Norvegicus, 5 Rattus Rattus, and 1 Mus Musculus were captured and tested for pathogenic Leptospira spp. byreal-time PCR targeting the Leptospira 16S rRNA (rrs) gene, revealing a total prevalence of 40.6%, 95% IC [30.9-50.8%]. Positive samples were subjected to species-specific real-time PCR assays targeting L. interrogans, L. noguchii, L. borgpetersenii, and L. kirschneri for species identification. However, positive samples for which Leptospira-species could not be determined were subjected to conventional PCR targeting the partial 16S rRNA (rrs) gene, and amplified DNA was subjected to sequencing. Leptospira spp. was detected in 36 kidney, 16 urine, and three lung specimens. L. interrogans was identified in 39 rodents and L. borpetersenii in one rodent; however, one rodent with renal carriage could not be typed due to poor DNA quality. This study provides the first description of pathogenic Leptospira spp. in wild rodents in Algeria. These findings suggest a high potential risk of leptospirosis transmission from rodents to humans and animals in Algeria and therefore imply the adoption of prophylactic measures. In addition, further studies, including different animals and rodent species, should be conducted to clarify the epidemiology of this disease in Algeria.
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Affiliation(s)
- Lila Lekhal
- Laboratoroire des Biotechnologies Liées à la Reproduction Animale, Institut des Sciences Vétérinaires, Univerité Saad Dahlab Blida1, P.B. 270, Route de Soumaa, Blida 09000, Algeria
- Départment des Sciences Vétérinaires, Institut des Sciences Vétérinaires, Université Saad Dahlab Blid1, Blida 09000, Algeria
| | - Elena Harran
- USC1233-INRAe Rongeurs Sauvages, Risque Sanitaire et Gestion des Populations, VetAgro Sup, Campus Vétérinaire de Lyon, 69280 Marcy l’Etoile, France
- Faculty of Arts and Sciences, Holy Spirit University of Kaslik (USEK), Jounieh P.O. Box 446, Lebanon
| | - Anaïs Aragon
- USC1233-INRAe Rongeurs Sauvages, Risque Sanitaire et Gestion des Populations, VetAgro Sup, Campus Vétérinaire de Lyon, 69280 Marcy l’Etoile, France
| | - Karine Groud
- USC1233-INRAe Rongeurs Sauvages, Risque Sanitaire et Gestion des Populations, VetAgro Sup, Campus Vétérinaire de Lyon, 69280 Marcy l’Etoile, France
| | - Marine Le Guyader
- USC1233-INRAe Rongeurs Sauvages, Risque Sanitaire et Gestion des Populations, VetAgro Sup, Campus Vétérinaire de Lyon, 69280 Marcy l’Etoile, France
| | - Rachid Kaidi
- Laboratoroire des Biotechnologies Liées à la Reproduction Animale, Institut des Sciences Vétérinaires, Univerité Saad Dahlab Blida1, P.B. 270, Route de Soumaa, Blida 09000, Algeria
- Départment des Sciences Vétérinaires, Institut des Sciences Vétérinaires, Université Saad Dahlab Blid1, Blida 09000, Algeria
| | - Djamel Khelef
- Ecole Nationale Supérieure Vétérinaire, Oued Smar, Alger 16000, Algeria
- Laboratoire de Santé et Production Animale, Ecole Nationale Supérieure Vétérinaire, Oued Smar, Alger 16000, Algeria
| | - Zouheira Djelouadji
- USC1233-INRAe Rongeurs Sauvages, Risque Sanitaire et Gestion des Populations, VetAgro Sup, Campus Vétérinaire de Lyon, 69280 Marcy l’Etoile, France
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4
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Camp JV, Desvars-Larrive A, Nowotny N, Walzer C. Monitoring Urban Zoonotic Virus Activity: Are City Rats a Promising Surveillance Tool for Emerging Viruses? Viruses 2022; 14:v14071516. [PMID: 35891496 PMCID: PMC9316102 DOI: 10.3390/v14071516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 06/16/2022] [Accepted: 07/08/2022] [Indexed: 02/01/2023] Open
Abstract
Urban environments represent unique ecosystems where dense human populations may come into contact with wildlife species, some of which are established or potential reservoirs for zoonotic pathogens that cause human diseases. Finding practical ways to monitor the presence and/or abundance of zoonotic pathogens is important to estimate the risk of spillover to humans in cities. As brown rats (Rattus norvegicus) are ubiquitous in urban habitats, and are hosts of several zoonotic viruses, we conducted longitudinal sampling of brown rats in Vienna, Austria, a large population center in Central Europe. We investigated rat tissues for the presence of several zoonotic viruses, including flaviviruses, hantaviruses, coronaviruses, poxviruses, hepatitis E virus, encephalomyocarditis virus, and influenza A virus. Although we found no evidence of active infections (all were negative for viral nucleic acids) among 96 rats captured between 2016 and 2018, our study supports the findings of others, suggesting that monitoring urban rats may be an efficient way to estimate the activity of zoonotic viruses in urban environments.
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Affiliation(s)
- Jeremy V. Camp
- Institute of Virology, University of Veterinary Medicine Vienna, 1210 Vienna, Austria;
- Center for Virology, Medical University of Vienna, 1090 Vienna, Austria
- Correspondence:
| | - Amélie Desvars-Larrive
- Institute of Food Safety, Food Technology and Veterinary Public Health, University of Veterinary Medicine Vienna, 1210 Vienna, Austria;
- Complexity Science Hub Vienna, 1080 Vienna, Austria
- VetFarm, University of Veterinary Medicine Vienna, 1210 Vienna, Austria
| | - Norbert Nowotny
- Institute of Virology, University of Veterinary Medicine Vienna, 1210 Vienna, Austria;
- Department of Basic Medical Sciences, College of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai P.O. Box 505055, United Arab Emirates
| | - Chris Walzer
- Research Institute of Wildlife Ecology, University of Veterinary Medicine Vienna, 1210 Vienna, Austria;
- Wildlife Conservation Society, Global Conservation Program, Bronx, NY 10460, USA
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5
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Robinson SJ, Finer R, Himsworth CG, Pearl DL, Rousseau J, Weese JS, Lindsay LR, Dibernardo A, Huynh C, Jardine CM. Evaluating the utility of pest control sourced rats for zoonotic pathogen surveillance. Zoonoses Public Health 2022; 69:468-474. [DOI: 10.1111/zph.12936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 01/31/2022] [Accepted: 02/19/2022] [Indexed: 11/28/2022]
Affiliation(s)
- Sarah J. Robinson
- Department of Pathobiology Ontario Veterinary College, University of Guelph Guelph Ontario Canada
| | - Rachel Finer
- Department of Pathobiology Ontario Veterinary College, University of Guelph Guelph Ontario Canada
| | - Chelsea G. Himsworth
- School of Population and Public Health University of British Columbia Vancouver British Columbia Canada
| | - David L. Pearl
- Department of Population Medicine Ontario Veterinary College, University of Guelph Guelph Ontario Canada
| | - Joyce Rousseau
- Department of Pathobiology Ontario Veterinary College, University of Guelph Guelph Ontario Canada
| | - J. Scott Weese
- Department of Pathobiology Ontario Veterinary College, University of Guelph Guelph Ontario Canada
| | - L. Robbin Lindsay
- Public Health Agency of Canada, National Microbiology Laboratory Winnipeg Manitoba Canada
| | - Antonia Dibernardo
- Public Health Agency of Canada, National Microbiology Laboratory Winnipeg Manitoba Canada
| | - Chris Huynh
- Public Health Agency of Canada, National Microbiology Laboratory Winnipeg Manitoba Canada
| | - Claire M. Jardine
- Department of Pathobiology Ontario Veterinary College, University of Guelph Guelph Ontario Canada
- Canadian Wildlife Health Cooperative, Ontario Veterinary College, University of Guelph Guelph Ontario Canada
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6
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Zeppelini CG, Carvalho-Pereira T, Alves RS, Santiago DCC, Santo VFE, Begon M, Costa F, Khalil H. Demographic drivers of Norway rat populations from urban slums in Brazil. Urban Ecosyst 2021; 24:801-809. [PMID: 34720572 PMCID: PMC8550123 DOI: 10.1007/s11252-020-01075-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/19/2020] [Indexed: 11/27/2022]
Abstract
The Norway rat is a globally distributed pest, known for its resilience to eradication and control programs. Efficient population control, especially in urban settings, is dependent on knowledge of rat demography and population ecology. We analyzed the relationship between four demographic outcomes, estimated by live-trapping data, and fine-scale environmental features measured at the capture site. Wounds, a proxy for agonistic interactions, were associated with mature individuals. Areas with environmental features favorable to rats, such as open sewers and unpaved earth, were associated with more mature individuals with a better body condition index. The control measures (environmental stressors) are likely to be disrupting the social structure of rat colonies, increasing the frequency and distribution of agonistic interactions, which were common in both sexes and maturity states. The relationship between the favorable environmental conditions and the demographic markers analyzed indicate possible targets for infestation control through environmental manipulation, and could be incorporated into current pest management programs to achieve long-term success. Our study indicate that urban interventions focused on removal of potential resources for rats could be potential long-term solutions by reducing the carrying capacity of the environment. Supplementary Information The online version contains supplementary material available at 10.1007/s11252-020-01075-2.
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Affiliation(s)
- C G Zeppelini
- Laboratório de Mamíferos, Universidade Federal da Paraíba, Cidade Universitária, João Pessoa, Brazil.,Programa de Pós-Graduação em Ecologia: Teoria, Aplicações e Valores, Universidade Federal da Bahia, R. Barão do Geremoabo, Salvador, 147 Brazil
| | - T Carvalho-Pereira
- Instituto de Saúde Coletiva, Universidade Federal da Bahia, R. Basílio da Gama, S/N, Salvador, Brazil
| | - R Sady Alves
- Programa de Pós-Graduação em Ciência Animal nos Trópicos, Universidade federal da Bahia, R. Barão do Geremoabo, Salvador, 147 Brazil
| | - D C C Santiago
- Instituto de Biologia, Universidade Federal da Bahia, R. Barão do Geremoabo, Salvador, 147 Brazil
| | - V F Espirito Santo
- Faculdade de Farmácia, Universidade Federal da Bahia, R. Barão do Geremoabo, Salvador, 147 Brazil
| | - M Begon
- Institute of Integrative Biology, University of Liverpool, Biosciences Building, Liverpool, L69 7ZB UK
| | - F Costa
- Instituto de Saúde Coletiva, Universidade Federal da Bahia, R. Basílio da Gama, S/N, Salvador, Brazil
| | - Hussein Khalil
- Department of Wildlife, Fish and Environmental Studies, Swedish University of Agricultural Sciences, SE-901 83 Umeå, Sweden
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7
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Parsons MH, Richardson JL, Kiyokawa Y, Stryjek R, Corrigan RM, Deutsch MA, Ootaki M, Tanikawa T, Parsons FE, Munshi-South J. Rats and the COVID-19 pandemic: considering the influence of social distancing on a global commensal pest. JOURNAL OF URBAN ECOLOGY 2021. [PMCID: PMC8500081 DOI: 10.1093/jue/juab027] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Rats contaminate foods and spread pathogens. Thus, changes in rat populations have consequences for society, especially in densely-populated cities. Following widespread social distancing and lockdown measures to curtail SARS-CoV-2, worldwide media outlets reported increased sightings of rats. To document possible changes in rat populations, we: (i) examined public service requests in the 6 years before, and during, ‘lockdown’ in New York City; (ii) used spatial analyses to identify calls in proximity to food service establishments (FSE); and (iii) surveyed pest-management companies. Over 6 years prior to the pandemic, we found a consistent moderate spatial association (r = 0.35) between FSE and rat-related calls. During the early stages of the pandemic, the association between rat reports and food services did not decrease as would be expected by restaurant closures, but instead modestly increased (r = 0.45). There was a 29.5% decrease in rat reports, overall. However, hotspot analysis showed that new reports were highly localized, yet absent in several industrial areas they were previously observed in, potentially masking a higher proportion of calls in neighborhoods near closed restaurants. Additionally, 37% of pest management companies surveyed reported that, unlike previous years, 50–100% of requests were from new clients and addresses. The finding that hotspots remained nearby dense clusters of restaurants does not support the common narrative that rats moved long distances. Rather, our results are consistent with rats finding nearby alternative food resources. Tracking these dynamics as the COVID-19 pandemic abates will be an important step to identifying how rats respond to society returning to normal activity patterns.
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Affiliation(s)
- Michael H Parsons
- Department of Biological Sciences, Fordham University, Bronx, NY, USA
| | | | - Yasushi Kiyokawa
- Laboratory of Veterinary Ethology, The University of Tokyo, Tokyo, Japan
| | - Rafal Stryjek
- Institute of Psychology, Polish Academy of Sciences, Warsaw, Poland
| | | | - Michael A Deutsch
- Medical and Applied Entomology, Arrow Exterminating Company, Inc., Lynbrook, NY, USA
| | - Masato Ootaki
- Laboratory of Veterinary Ethology, The University of Tokyo, Tokyo, Japan
| | | | - Faith E Parsons
- CareSet Systems, Houston, TX, USA
- Center for Behavioral and Cardiovascular Health, Columbia University, New York, NY, USA
| | - Jason Munshi-South
- Department of Biological Sciences and the Louis Calder Center—Biological Field Station, Fordham University, Armonk, NY, USA
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Let's get wild: A review of free-ranging rat assays as context-enriched supplements to traditional laboratory models. J Neurosci Methods 2021; 362:109303. [PMID: 34352335 DOI: 10.1016/j.jneumeth.2021.109303] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 07/21/2021] [Accepted: 07/29/2021] [Indexed: 01/30/2023]
Abstract
More than 24,000 rodent studies are published annually, with the vast majority of these studies focused on genetically undiverse animals in highly-controlled laboratory settings. However, findings from the laboratory have become increasingly unreliable for predicting outcomes in field and clinical settings, leading to a perceived crisis in translational research. One cause of this disparity might be that most human societies, in contrast to laboratory rodents, are genetically diverse and live in super-enriched environments. Methods for importing wild rats into the laboratory, and also exporting laboratory-style chambers into natural environments are not well-known outside their respective disciplines. Therefore, we have reviewed the current status of supplements to the laboratory rodent assay. We progress logically from highly-controlled experiments with natural breeding colonies to purely naturalistic approaches with free-ranging rats. We then highlight a number of approaches that allow genetically-diverse wild rats to be utilized in context-enriched paradigms. While considering the benefits and shortcomings of each available approach, we detail protocols for random sampling, remote-sensing, and deployment of laboratory chambers in the field. As supplements to standardized laboratory trials, some of these assays could offer key insights to help unify outcomes between laboratory and field studies. However, we note several outstanding questions that must be addressed such as: the trade-off between control and context, possible reductions in sample size, ramifications for the 'standardization fallacy', and ethical dilemmas of working with wild animals. Given these challenges, further innovation will be required before supplemental assays can be made broadly-accessible and thus, transferrable across disciplines.
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9
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Sánchez CA, Rios MJ, Murray MH. Social and environmental correlates of rat complaints in Chicago. JOURNAL OF URBAN ECOLOGY 2021. [DOI: 10.1093/jue/juab006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Urban rats are widely distributed pests that have negative effects on public health and property. It is crucial to understand their distribution to inform control efforts and address drivers of rat presence. Analysing public rat complaints can help assess urban rat distribution and identify factors supporting rat populations. Both social and environmental factors could promote rat complaints and must be integrated to understand rat distributions. We analysed rat complaints made between 2011 and 2017 in Chicago, a city with growing rat problems and stark wealth inequality. We examined whether rat complaints at the census tract level are associated with factors that could influence rat abundance, rats’ visibility to humans, and the likelihood of people making a complaint. Complaints were significantly positively correlated with anthropogenic factors hypothesized to promote rat abundance (restaurants, older buildings, garbage complaints, and dog waste complaints) or rat visibility (building construction/demolition activity), and factors hypothesized to increase the likelihood of complaining (human population density, more owner-occupied homes); we also found that complaints were highest in the summer. Our results suggest that conflicts between residents and rats are mainly driven by seasonal variation in rat abundance and human activity and could be mitigated with strategies such as securing food waste from residential and commercial sources. Accounting for social factors such as population density, construction and demolition activity, and home ownership versus rental can also help cities more accurately predict blocks at higher risk of rat conflicts.
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Affiliation(s)
- Cecilia A Sánchez
- Odum School of Ecology, University of Georgia, 140 E. Green St., Athens, GA 30602, USA
- Center for the Ecology of Infectious Diseases, University of Georgia, 140 E. Green St., Athens, GA 30602, USA
| | - María Jazmín Rios
- DePaul University, 1 E. Jackson Blvd., Chicago, IL 60604, USA
- Urban Wildlife Institute, Lincoln Park Zoo, 2001 N. Clark Street, Chicago, IL 60614, USA
| | - Maureen H Murray
- Urban Wildlife Institute, Lincoln Park Zoo, 2001 N. Clark Street, Chicago, IL 60614, USA
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10
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Predicting the Presence of Leptospires in Rodents from Environmental Indicators Opens Up Opportunities for Environmental Monitoring of Human Leptospirosis. REMOTE SENSING 2021. [DOI: 10.3390/rs13020325] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Leptospirosis, an environmental infectious disease of bacterial origin, is the infectious disease with the highest associated mortality in Seychelles. In small island territories, the occurrence of the disease is spatially heterogeneous and a better understanding of the environmental factors that contribute to the presence of the bacteria would help implement targeted control. The present study aimed at identifying the main environmental parameters correlated with animal reservoirs distribution and Leptospira infection in order to delineate habitats with highest prevalence. We used a previously published dataset produced from a large collection of rodents trapped during the dry and wet seasons in most habitats of Mahé, the main island of Seychelles. A land use/land cover analysis was realized in order to describe the various environments using SPOT-5 images by remote sensing (object-based image analysis). At each sampling site, landscape indices were calculated and combined with other geographical parameters together with rainfall records to be used in a multivariate statistical analysis. Several environmental factors were found to be associated with the carriage of leptospires in Rattus rattus and Rattus norvegicus, namely low elevations, fragmented landscapes, the proximity of urbanized areas, an increased distance from forests and, above all, increased precipitation in the three months preceding trapping. The analysis indicated that Leptospira renal carriage could be predicted using the species identification and a description of landscape fragmentation and rainfall, with infection prevalence being positively correlated with these two environmental variables. This model may help decision makers in implementing policies affecting urban landscapes and/or in balancing conservation efforts when designing pest control strategies that should also aim at reducing human contact with Leptospira-laden rats while limiting their impact on the autochthonous fauna.
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Byers KA, Booker TR, Combs M, Himsworth CG, Munshi‐South J, Patrick DM, Whitlock MC. Using genetic relatedness to understand heterogeneous distributions of urban rat-associated pathogens. Evol Appl 2021; 14:198-209. [PMID: 33519965 PMCID: PMC7819557 DOI: 10.1111/eva.13049] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2020] [Revised: 06/12/2020] [Accepted: 06/14/2020] [Indexed: 11/28/2022] Open
Abstract
Urban Norway rats (Rattus norvegicus) carry several pathogens transmissible to people. However, pathogen prevalence can vary across fine spatial scales (i.e., by city block). Using a population genomics approach, we sought to describe rat movement patterns across an urban landscape and to evaluate whether these patterns align with pathogen distributions. We genotyped 605 rats from a single neighborhood in Vancouver, Canada, and used 1,495 genome-wide single nucleotide polymorphisms to identify parent-offspring and sibling relationships using pedigree analysis. We resolved 1,246 pairs of relatives, of which only 1% of pairs were captured in different city blocks. Relatives were primarily caught within 33 meters of each other leading to a highly leptokurtic distribution of dispersal distances. Using binomial generalized linear mixed models, we evaluated whether family relationships influenced rat pathogen status with the bacterial pathogens Leptospira interrogans, Bartonella tribocorum, and Clostridium difficile, and found that an individual's pathogen status was not predicted any better by including disease status of related rats. The spatial clustering of related rats and their pathogens lends support to the hypothesis that spatially restricted movement promotes the heterogeneous patterns of pathogen prevalence evidenced in this population. Our findings also highlight the utility of evolutionary tools to understand movement and rat-associated health risks in urban landscapes.
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Affiliation(s)
- Kaylee A. Byers
- Department of Interdisciplinary StudiesUniversity of British ColumbiaVancouverBCCanada
- Biodiversity Research CentreUniversity of British ColumbiaVancouverBCCanada
- Canadian Wildlife Health CooperativeAnimal Health CentreBritish Columbia Ministry of AgricultureAbbotsfordBCCanada
| | - Tom R. Booker
- Biodiversity Research CentreUniversity of British ColumbiaVancouverBCCanada
| | - Matthew Combs
- Department of Ecology, Evolution and Environmental BiologyColumbia UniversityNew YorkNYUSA
| | - Chelsea G. Himsworth
- Canadian Wildlife Health CooperativeAnimal Health CentreBritish Columbia Ministry of AgricultureAbbotsfordBCCanada
- School of Population and Public HealthUniversity of British ColumbiaVancouverBCCanada
- Animal Health CentreBritish Columbia Ministry of AgricultureAbbotsfordBCCanada
| | - Jason Munshi‐South
- Louis Calder Center‐Biological Field Station and Department of Biological ScienceFordham UniversityArmonkNYUSA
| | - David M. Patrick
- School of Population and Public HealthUniversity of British ColumbiaVancouverBCCanada
- British Columbia Centre for Disease ControlVancouverBCCanada
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12
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Gliga DS, Pisanu B, Walzer C, Desvars-Larrive A. Helminths of urban rats in developed countries: a systematic review to identify research gaps. Parasitol Res 2020; 119:2383-2397. [PMID: 32607706 PMCID: PMC7366588 DOI: 10.1007/s00436-020-06776-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Accepted: 06/17/2020] [Indexed: 12/15/2022]
Abstract
Although black (Rattus rattus) and brown (Rattus norvegicus) rats are among the most widespread synanthropic wild rodents, there is a surprising scarcity of knowledge about their ecology in the urban ecosystem. In particular, relatively few studies have investigated their helminth species diversity in such habitat. We followed the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analysis) guideline to synthesize the existing published literature regarding the helminth fauna of urban rats in developed countries (North America, Europe, Australia, New Zealand and Japan). We aimed at describing the species diversity and richness of urban rat helminths, the species prevalence and associations, the methods of investigation, the pathological changes observed in the hosts, the risk factors of infection and the public health significance of rat-borne helminthiases. Twenty-three scientific papers published between 1946 and 2019 were reviewed, half of them were conducted in Europe. Twenty-five helminth species and eight genera were described from the liver, digestive tract, lungs and muscles of urban rats. The most commonly reported parasite was Calodium hepaticum. Prevalence and risk factors of helminth infection in urban rats varied greatly between studies. Observed pathological findings in the rat host were generally minor, except for C. hepaticum. Several rat helminths can parasitize humans and are therefore of public health significance. The lack of references to identification keys and the rare use of molecular tools for species confirmation represent the main limitation of these studies. Knowledge gap on this topic and the needs for future research are discussed.
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Affiliation(s)
- Diana S Gliga
- Conservation Medicine, Research Institute of Wildlife Ecology, University of Veterinary Medicine, Vienna, Austria
| | - Benoît Pisanu
- Unité Mixte de Services (UMS) 2006 Patrimoine Naturel, Office Français pour la Biodiversité (OFB), Muséum National d'Histoire Naturelle (MNHN), Paris, France
| | - Chris Walzer
- Conservation Medicine, Research Institute of Wildlife Ecology, University of Veterinary Medicine, Vienna, Austria
- Health Program, Wildlife Conservation Society, Bronx, NY, USA
| | - Amélie Desvars-Larrive
- Conservation Medicine, Research Institute of Wildlife Ecology, University of Veterinary Medicine, Vienna, Austria.
- Unit of Veterinary Public Health and Epidemiology, Institute of Food Safety, Food Technology and Veterinary Public Health, University of Veterinary Medicine, Vienna, Austria.
- Complexity Science Hub, Vienna, Austria.
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13
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Abstract
The Norway rat has important impacts on our life. They are amongst the most used research subjects, resulting in ground-breaking advances. At the same time, wild rats live in close association with us, leading to various adverse interactions. In face of this relevance, it is surprising how little is known about their natural behaviour. While recent laboratory studies revealed their complex social skills, little is known about their social behaviour in the wild. An integration of these different scientific approaches is crucial to understand their social life, which will enable us to design more valid research paradigms, develop more effective management strategies, and to provide better welfare standards. Hence, I first summarise the literature on their natural social behaviour. Second, I provide an overview of recent developments concerning their social cognition. Third, I illustrate why an integration of these areas would be beneficial to optimise our interactions with them.
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Affiliation(s)
- Manon K Schweinfurth
- School of Psychology and Neuroscience, University of St AndrewsSt AndrewsUnited Kingdom
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14
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Parsons MH, Deutsch MA, Dumitriu D, Munshi-South J. Differential responses by urban brown rats (Rattus norvegicus) toward male or female-produced scents in sheltered and high-risk presentations. JOURNAL OF URBAN ECOLOGY 2019. [DOI: 10.1093/jue/juz009] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Wild rats (Rattus norvegicus) are among the most ubiquitous and consequential organisms in the urban environment. However, collecting data from city rats is difficult, and there has been little research to determine the influence, or valence, of rat scents on urban conspecifics. Using a mark-release-monitor protocol, we previously learned rats can be attracted to remote-sensing points when baited with mixed-bedding from male and female laboratory rats. It was thus essential that we disambiguate which scents were eliciting attraction (+ valence), inspection, a conditioned response whereby attraction may be followed by avoidance (–valence), or null-response (0 valence). We used radio-frequency identification tagging and scent-baited antennas to assess extended (>40 days) responses to either male or female scents against two risk presentations (near-shelter and exposed to predators). In response to male scents, rats (n = 8) visited both treatments (shelter, exposed) more than controls (0.2 visits/day treatment vs. 0.1/day; P < 0.05) indicating scents accounted for response more so than risk. Dwell-times, however, did not differ (1.2 s/visit treatment vs. 0.9 s/visit; P > 0.5). These outcomes are consistent with inspection (–valence). In response to female scents, rats (n = 7) increased visitation (5.02 visits/day vs. 0.1/day controls; P < 0.05), while dwell-times also increased 6.8 s/visit vs. 0.2 s/visit in both risk-settings. The latter is consistent with persistent attraction (+valence), but was also influenced by shelter, as runway visits (1.1 visits/day) were a magnitude more common than predator-exposed (0.1 visits/day). Further understanding and exploiting the mobility of city rats is necessary for improvements in basic and applied research, including city pathogen-surveillance and urban wildlife management.
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Affiliation(s)
- Michael H Parsons
- Department of Biological Sciences, Fordham University, Bronx, NY, USA
| | - Michael A Deutsch
- Medical and Applied Entomology, Arrow Exterminating Company, Inc., Lynbrook, NY, USA
| | - Dani Dumitriu
- Departments of Pediatrics and Psychiatry, the Zuckerman Institute, and the Columbia Population Research Center, Columbia University, New York, NY, USA
| | - Jason Munshi-South
- Department of Biological Sciences and the Louis Calder Center—Biological Field Station, Fordham University, Armonk, NY, USA
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15
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Byers KA, Lee MJ, Patrick DM, Himsworth CG. Rats About Town: A Systematic Review of Rat Movement in Urban Ecosystems. Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00013] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
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16
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Walter T, Zink R, Laaha G, Zaller JG, Heigl F. Fox sightings in a city are related to certain land use classes and sociodemographics: results from a citizen science project. BMC Ecol 2018; 18:50. [PMID: 30497463 PMCID: PMC6267792 DOI: 10.1186/s12898-018-0207-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Accepted: 11/21/2018] [Indexed: 11/12/2022] Open
Abstract
Background Red foxes (Vulpes vulpes L.) have become successful inhabitants of urban areas in recent years. However, our knowledge about the occurrence, distribution and association with land uses of these urban foxes is poor, partly because many favoured habitats are on private properties and therefore hardly accessible to scientists. We assumed that citizen science, i.e. the involvement of the public, could enable researchers to bridge this information gap. We analysed 1179 fox sightings in the city of Vienna, Austria reported via citizen science projects to examine relationships between foxes and the surrounding land use classes as well as sociodemographic parameters. Results Conditional probabilities of encountering foxes were substantially higher in gardens, areas with a low building density, parks or squares as compared to agricultural areas, industrial areas or forests. Generalized linear model analyses showed that sociodemographic parameters such as education levels, district area, population density and average household income additionally improved the predictability of fox sightings. Conclusions Reports of fox sightings by citizen scientists might help to support the establishment of wildlife management in cities. Additionally, these data could be used to address public health issues in relation with red foxes as they can carry zoonoses that are also dangerous to humans. Electronic supplementary material The online version of this article (10.1186/s12898-018-0207-7) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Theresa Walter
- Research Institute of Wildlife Ecology, University of Veterinary Medicine, Vienna, Savoyenstrasse 1, 1160, Vienna, Austria.,Institute of Zoology, University of Natural Resources and Life Sciences, Vienna, Gregor Mendel Strasse 33, 1180, Vienna, Austria
| | - Richard Zink
- Austrian Ornithological Centre, Konrad Lorenz Institute of Ethology, University of Veterinary Medicine, Vienna, Savoyenstrasse 1a, 1160, Vienna, Austria
| | - Gregor Laaha
- Institute for Applied Statistics and Computing, University of Natural Resources and Life Sciences, Vienna, Peter Jordan-Strasse 82, 1190, Vienna, Austria
| | - Johann G Zaller
- Institute of Zoology, University of Natural Resources and Life Sciences, Vienna, Gregor Mendel Strasse 33, 1180, Vienna, Austria
| | - Florian Heigl
- Institute of Zoology, University of Natural Resources and Life Sciences, Vienna, Gregor Mendel Strasse 33, 1180, Vienna, Austria.
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Murray MH, Fyffe R, Fidino M, Byers KA, Ríos MJ, Mulligan MP, Magle SB. Public Complaints Reflect Rat Relative Abundance Across Diverse Urban Neighborhoods. Front Ecol Evol 2018. [DOI: 10.3389/fevo.2018.00189] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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