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For: Abrams MB, Bjaalie JG, Das S, Egan GF, Ghosh SS, Goscinski WJ, Grethe JS, Kotaleski JH, Ho ETW, Kennedy DN, Lanyon LJ, Leergaard TB, Mayberg HS, Milanesi L, Mouček R, Poline JB, Roy PK, Strother SC, Tang TB, Tiesinga P, Wachtler T, Wójcik DK, Martone ME. A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. Neuroinformatics 2022;20:25-36. [PMID: 33506383 PMCID: PMC9036053 DOI: 10.1007/s12021-020-09509-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/28/2020] [Indexed: 01/07/2023]
Number Cited by Other Article(s)
1
Bannach-Brown A, Rackoll T, Macleod MR, McCann SK. Building a synthesis-ready research ecosystem: fostering collaboration and open science to accelerate biomedical translation. BMC Med Res Methodol 2025;25:66. [PMID: 40065205 PMCID: PMC11892198 DOI: 10.1186/s12874-025-02524-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2024] [Accepted: 02/27/2025] [Indexed: 03/14/2025]  Open
2
Sinha A, Gleeson P, Marin B, Dura-Bernal S, Panagiotou S, Crook S, Cantarelli M, Cannon RC, Davison AP, Gurnani H, Silver RA. The NeuroML ecosystem for standardized multi-scale modeling in neuroscience. eLife 2025;13:RP95135. [PMID: 39792574 PMCID: PMC11723582 DOI: 10.7554/elife.95135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2025]  Open
3
Ekhtiari H, Zare-Bidoky M, Sangchooli A, Valyan A, Abi-Dargham A, Cannon DM, Carter CS, Garavan H, George TP, Ghobadi-Azbari P, Juchem C, Krystal JH, Nichols TE, Öngür D, Pernet CR, Poldrack RA, Thompson PM, Paulus MP. Reporting checklists in neuroimaging: promoting transparency, replicability, and reproducibility. Neuropsychopharmacology 2024;50:67-84. [PMID: 39242922 PMCID: PMC11525976 DOI: 10.1038/s41386-024-01973-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Revised: 08/08/2024] [Accepted: 08/12/2024] [Indexed: 09/09/2024]
4
Tecuatl C, Ljungquist B, Ascoli GA. Accelerating the continuous community sharing of digital neuromorphology data. FASEB Bioadv 2024;6:207-221. [PMID: 38974113 PMCID: PMC11226999 DOI: 10.1096/fba.2024-00048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 05/28/2024] [Accepted: 06/03/2024] [Indexed: 07/09/2024]  Open
5
Ji Z, Guo S, Qiao Y, McDougal RA. Automating literature screening and curation with applications to computational neuroscience. J Am Med Inform Assoc 2024;31:1463-1470. [PMID: 38722233 PMCID: PMC11187430 DOI: 10.1093/jamia/ocae097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Revised: 03/19/2024] [Accepted: 04/16/2024] [Indexed: 06/21/2024]  Open
6
Blixhavn CH, Reiten I, Kleven H, Øvsthus M, Yates SC, Schlegel U, Puchades MA, Schmid O, Bjaalie JG, Bjerke IE, Leergaard TB. The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases. Front Neuroinform 2024;18:1284107. [PMID: 38421771 PMCID: PMC10884250 DOI: 10.3389/fninf.2024.1284107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Accepted: 01/24/2024] [Indexed: 03/02/2024]  Open
7
Martone ME. The past, present and future of neuroscience data sharing: a perspective on the state of practices and infrastructure for FAIR. Front Neuroinform 2024;17:1276407. [PMID: 38250019 PMCID: PMC10796549 DOI: 10.3389/fninf.2023.1276407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Accepted: 10/31/2023] [Indexed: 01/23/2024]  Open
8
Bernier A, Knoppers BM, Bermudez P, Beauvais MJS, Thorogood A. Open Data governance at the Canadian Open Neuroscience Platform (CONP): From the Walled Garden to the Arboretum. Gigascience 2024;13:giad114. [PMID: 38217404 PMCID: PMC10787360 DOI: 10.1093/gigascience/giad114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 11/14/2023] [Accepted: 12/10/2023] [Indexed: 01/15/2024]  Open
9
Van Horn JD. Editorial: On the Economics of Neuroscientific Data Sharing. Neuroinformatics 2024;22:1-4. [PMID: 37966621 DOI: 10.1007/s12021-023-09649-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2023]
10
Thorogood A. Population Neuroscience: Strategies to Promote Data Sharing While Protecting Privacy. Curr Top Behav Neurosci 2024;68:53-66. [PMID: 38509403 DOI: 10.1007/7854_2024_467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2024]
11
Radabaugh HL, Ferguson AR, Bramlett HM, Dietrich WD. Increasing Rigor of Preclinical Research to Maximize Opportunities for Translation. Neurotherapeutics 2023;20:1433-1445. [PMID: 37525025 PMCID: PMC10684440 DOI: 10.1007/s13311-023-01400-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/09/2023] [Indexed: 08/02/2023]  Open
12
Gado S, Lingelbach K, Wirzberger M, Vukelić M. Decoding Mental Effort in a Quasi-Realistic Scenario: A Feasibility Study on Multimodal Data Fusion and Classification. SENSORS (BASEL, SWITZERLAND) 2023;23:6546. [PMID: 37514840 PMCID: PMC10383122 DOI: 10.3390/s23146546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Revised: 07/17/2023] [Accepted: 07/17/2023] [Indexed: 07/30/2023]
13
Shweikh Y, Sekimitsu S, Boland MV, Zebardast N. The Growing Need for Ophthalmic Data Standardization. OPHTHALMOLOGY SCIENCE 2023;3:100262. [PMID: 36691643 PMCID: PMC9860145 DOI: 10.1016/j.xops.2022.100262] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
14
Mittal D, Mease R, Kuner T, Flor H, Kuner R, Andoh J. Data management strategy for a collaborative research center. Gigascience 2022;12:giad049. [PMID: 37401720 PMCID: PMC10318494 DOI: 10.1093/gigascience/giad049] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 02/20/2023] [Accepted: 06/11/2023] [Indexed: 07/05/2023]  Open
15
Brůha P, Mouček R, Salamon J, Vacek V. Workflow for health-related and brain data lifecycle. Front Digit Health 2022;4:1025086. [PMID: 36532611 PMCID: PMC9748096 DOI: 10.3389/fdgth.2022.1025086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Accepted: 11/01/2022] [Indexed: 09/19/2023]  Open
16
Redolfi A, Archetti D, De Francesco S, Crema C, Tagliavini F, Lodi R, Ghidoni R, Gandini Wheeler-Kingshott CAM, Alexander DC, D'Angelo E. Italian, European, and international neuroinformatics efforts: An overview. Eur J Neurosci 2022. [PMID: 36310103 DOI: 10.1111/ejn.15854] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 10/18/2022] [Accepted: 10/18/2022] [Indexed: 12/15/2022]
17
Ropelewski AJ, Rizzo MA, Swedlow JR, Huisken J, Osten P, Khanjani N, Weiss K, Bakalov V, Engle M, Gridley L, Krzyzanowski M, Madden T, Maiese D, Mandal M, Waterfield J, Williams D, Hamilton CM, Huggins W. Standard metadata for 3D microscopy. Sci Data 2022;9:449. [PMID: 35896564 PMCID: PMC9329339 DOI: 10.1038/s41597-022-01562-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Accepted: 07/13/2022] [Indexed: 01/04/2023]  Open
18
Eriksson O, Bhalla US, Blackwell KT, Crook SM, Keller D, Kramer A, Linne ML, Saudargienė A, Wade RC, Hellgren Kotaleski J. Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows. eLife 2022;11:e69013. [PMID: 35792600 PMCID: PMC9259018 DOI: 10.7554/elife.69013] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Accepted: 05/13/2022] [Indexed: 12/22/2022]  Open
19
Yan J, Chen L, Yu Y, Xu H, Xu Z, Sheng Y, Chen J. Neuroimaging-ITM: A Text Mining Pipeline Combining Deep Adversarial Learning with Interaction Based Topic Modeling for Enabling the FAIR Neuroimaging Study. Neuroinformatics 2022;20:701-726. [PMID: 35235184 DOI: 10.1007/s12021-022-09571-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/04/2022] [Indexed: 12/31/2022]
20
Amunts K, DeFelipe J, Pennartz C, Destexhe A, Migliore M, Ryvlin P, Furber S, Knoll A, Bitsch L, Bjaalie JG, Ioannidis Y, Lippert T, Sanchez-Vives MV, Goebel R, Jirsa V. Linking Brain Structure, Activity, and Cognitive Function through Computation. eNeuro 2022;9:ENEURO.0316-21.2022. [PMID: 35217544 PMCID: PMC8925650 DOI: 10.1523/eneuro.0316-21.2022] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Revised: 01/11/2022] [Accepted: 01/17/2022] [Indexed: 01/19/2023]  Open
21
Newmaster KT, Kronman FA, Wu YT, Kim Y. Seeing the Forest and Its Trees Together: Implementing 3D Light Microscopy Pipelines for Cell Type Mapping in the Mouse Brain. Front Neuroanat 2022;15:787601. [PMID: 35095432 PMCID: PMC8794814 DOI: 10.3389/fnana.2021.787601] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Accepted: 12/02/2021] [Indexed: 12/14/2022]  Open
22
Das S, Abou-Haidar R, Rabalais H, Sun SDLW, Rosli Z, Chatpar K, Boivin MN, Tabatabaei M, Rogers C, Legault M, Lo D, Degroot C, Dagher A, Dyke SOM, Durcan TM, Seyller A, Doyon J, Poupon V, Fon EA, Genge A, Rouleau GA, Karamchandani J, Evans AC. The C-BIG Repository: an Institution-Level Open Science Platform. Neuroinformatics 2022;20:139-153. [PMID: 34003431 PMCID: PMC9537233 DOI: 10.1007/s12021-021-09516-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/16/2021] [Indexed: 01/07/2023]
23
Sullivan AE, Tappan SJ, Angstman PJ, Rodriguez A, Thomas GC, Hoppes DM, Abdul-Karim MA, Heal ML, Glaser JR. A Comprehensive, FAIR File Format for Neuroanatomical Structure Modeling. Neuroinformatics 2022;20:221-240. [PMID: 34601704 PMCID: PMC8975944 DOI: 10.1007/s12021-021-09530-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/01/2021] [Indexed: 01/09/2023]
24
Barch DM, Norris SMP, Martone ME. Using Cloud-Based Resources for Neuroimaging Research: A Practical Approach. NAM Perspect 2021;2021:202107b. [PMID: 34611606 DOI: 10.31478/202107b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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