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Wang FR, Feng SY, Liang S, Du WY, Wang LQ, Zhang YW, Ren JY, Gao S, Zhu YJ, Cong YT, Wang L, Gu J, Wang Y, Wang H, Lu YN, Wang LS, Yang GJ. Rapid and efficient nitrogen removal by a novel heterotrophic nitrification-aerobic denitrification bacteria Marinobacterium maritimum 5-JS in aquaculture wastewater: Performance and potential applications. ENVIRONMENTAL RESEARCH 2025; 276:121500. [PMID: 40164420 DOI: 10.1016/j.envres.2025.121500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2025] [Revised: 02/27/2025] [Accepted: 03/29/2025] [Indexed: 04/02/2025]
Abstract
Efficient nitrogen removal from aquaculture wastewater is crucial for environmental sustainability. A novel strain, Marinobacterium maritimum 5-JS, exhibiting HN-AD capabilities, was isolated from a sea cucumber aquaculture pond. This strain demonstrated remarkable nitrogen removal efficiencies, achieving nearly 100% elimination of NH4+-N, NO3--N and NO2--N within 18 h. Strain 5-JS preferentially utilizes NH4+-N in simultaneous nitrification and denitrification processes, with optimal removal achieved using sodium citrate as a carbon source, a C/N ratio of 11, pH 8.0, and at a temperature of 30 °C. The metabolic pathway of strain 5-JS was elucidated, indicating its adaptability to high concentrations of Mg2+, Fe2+, and Mn2+ (up to 50 mg/L). When introduced into mariculture wastewater, strain 5-JS rapidly reduced concentrations of all three nitrogen compounds to undetectable levels within 8 h. These findings highlight the exceptional nitrogen removal capabilities of strain 5-JS and its potential for application in the biological treatment of aquaculture wastewater.
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Affiliation(s)
- Fu-Rong Wang
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China
| | - Shi-Yu Feng
- College of Fishery Economics, Tangshan Maritime Institute, Tangshan, 063000, China
| | - Shuai Liang
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China
| | - Wei-Yu Du
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China
| | - Long-Qi Wang
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China
| | - Yu-Wei Zhang
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China
| | - Jia-Yu Ren
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China
| | - Shuang Gao
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China
| | - Yu-Jie Zhu
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China
| | - Yu-Ting Cong
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China
| | - Li Wang
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China
| | - Jing Gu
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China
| | - Yuan Wang
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China
| | - Hua Wang
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China.
| | - Ya-Nan Lu
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China.
| | - Lian-Shun Wang
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China.
| | - Guo-Jun Yang
- College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education (Dalian Ocean University), Ministry of Education, Dalian, 116023, China; Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian, 116023, China; Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, 116023, China.
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2
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Rossi S, Capson-Tojo G, Sànchez-Zurano A, Carecci D, Batstone DJ, Acìén-Fernandez GF, Ficara E. Recent advances and challenges in mechanistic modelling of photosynthetic processes for wastewater treatment. WATER RESEARCH 2025; 278:123216. [PMID: 40168914 DOI: 10.1016/j.watres.2025.123216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2024] [Revised: 01/24/2025] [Accepted: 01/27/2025] [Indexed: 04/03/2025]
Abstract
Phototrophy-based wastewater treatment has the potential to reduce wastewater bioremediation costs, improving environmental impacts and allowing for enhanced resource recovery. Microbial interactions occurring in phototrophic-chemotrophic consortia treating wastewater are particularly complex, and with varying impact on each microbial clade by different chemical, biological and physical factors, including light-related aspects. For this reason, mechanistic mathematical modelling of these systems is challenging, and the resulting models are especially complex. The present study focuses particularly on the extension of microalgae-focused models to the simulation of phototrophic-chemotrophic systems, especially as for (i) microalgae-bacteria consortia and (ii) purple bacteria-enriched communities. The review identifies model structures and typical modelling choices, as well as the potential applications and limitations of available experimental protocols for model calibration, identifying relevant research needs and requirements. Simplified models have been proposed, which allow assessment of dominant mechanisms, but may not represent more complex behaviour, including nutrient removal and response to light cycling. These models have been largely applied to simple (oxygen and carbon dioxide) exchange between algae and aerobic heterotrophs. More comprehensive models, including all relevant microbial clades, have been recently published, which consider nutrient cycling, competitive uptake, and other features, including temperature, pH, and gas transfer. These models have comparable structures, but a quantitative comparison between these models is often challenging due to different fundamental stoichiometry (e.g., in the assumed algae composition), or in differing approaches to storage compounds. Particularly for models with a high complexity, it is often difficult to properly estimate biokinetic species-specific parameters for the different phototrophic and chemotrophic populations involved. Several methods have been proposed for model calibration, among which photo-respirometry has shown considerable potential. However, photo-respirometric methods do not follow a standardised approach, which has limited their application and comparability between studies. Finally, the validation of models on long-term data sets, demonstrating the impact of seasonality, as well as long-term population adaptation, is rare.
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Affiliation(s)
- S Rossi
- Department of Civil and Environmental Engineering (DICA), Politecnico di Milano, Piazza L. da Vinci, 32, 20133 Milan, Italy.
| | - G Capson-Tojo
- INRAE, Univ. Montpellier, LBE 102 Avenue des Etangs, 11100 Narbonne, France.
| | - A Sànchez-Zurano
- Department of Chemical Engineering, Faculty of Chemistry, University of Murcia, Campus of Espinardo, 30071 Murcia, Spain.
| | - D Carecci
- Department of Electronics, Informatics and Bioengineering (DEIB), Politecnico di Milano, Piazza L. da Vinci, 32, 20133 Milan, Italy.
| | - D J Batstone
- Australian Centre for Water and Environmental Biotechnology, The University of Queensland, Brisbane, Queensland 4072, Australia.
| | - G F Acìén-Fernandez
- Department of Chemical Engineering, Universidad de Almería, E04120 Almería, Spain.
| | - E Ficara
- Department of Civil and Environmental Engineering (DICA), Politecnico di Milano, Piazza L. da Vinci, 32, 20133 Milan, Italy.
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3
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He Y, Yun H, Peng L, Wang W, Xu T, Zhang W, Li X. Synthetic microbial community maintains the functional stability of aerobic denitrification under environmental disturbances: Insight into the mechanism of interspecific division of labor. WATER RESEARCH 2025; 277:123270. [PMID: 40020349 DOI: 10.1016/j.watres.2025.123270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2024] [Revised: 01/20/2025] [Accepted: 02/09/2025] [Indexed: 03/03/2025]
Abstract
Understanding how synthetic microbial community (SMC) respond to environmental disturbances is the key to realizing SMC engineering applications. Here, dibutyl phthalate (DBP) and levofloxacin (LOFX) were used as environmental disturbances to study their effects on the aerobic denitrification functional stability of SMC composed of Pseudomonas aeruginosa N2 (PA), Acinetobacter baumannii N1(AC) and Aeromonas hydrophila (AH). The results showed that aerobic denitrification efficiency could be maintained at about 93 % under DBP or LOFX disturbance, and interspecific communication was mainly carried out through N-butyryl-L-homoserine lactone (C4-HSL) and N-(3-oxododecanoyl)-L-homoserine lactone (3OC12-HSL), correspondingly. DBP and LOFX induced the acceleration of tricarboxylic acid (TCA) cycle, which facilitated the energy flux and extracellular polymeric substances (EPS) production, thereby allowing SMC to adapt to disturbances. Under DBP disturbance, DBP stimulated phenazine-1-carboxylic acid production to accelerate electron transfer from the quinone pool to complex III, resulting in an increase in electron transfer activity. Up-regulation of complex I, complex III and heme synthesis genes under LOFX disturbance led to enhanced denitrification enzymes expression and electron transfer efficiency. SMC re-regulated different metabolic pathways to build metabolic networks to maintain normal metabolic activity under different disturbances. Overall, SMC maintained functional stability through the labor division in modulation of interspecific communication, formation of defensive barriers, promotion of energy flux, directional transfer of electron flux, and reconstruction of metabolic networks. DBP stimulated AH and PA to occupy functional dominance, while LOFX induced AC and PA to play a major role. The understanding of the stability mechanism under different environmental disturbances provides valuable guidance for stability maintenance and engineering applications of SMC.
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Affiliation(s)
- Yue He
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou, 730000, China
| | - Hui Yun
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou, 730000, China; Gansu Key Laboratory of Biomonitoring and Bioremediation for Environment Pollution, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou, 730000, China.
| | - Liang Peng
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou, 730000, China
| | - Wenxue Wang
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou, 730000, China
| | - Ting Xu
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou, 730000, China
| | - Wenjie Zhang
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou, 730000, China
| | - Xiangkai Li
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou, 730000, China; Gansu Key Laboratory of Biomonitoring and Bioremediation for Environment Pollution, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou, 730000, China.
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4
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Moncelon R, de Lignières C, Pineau P, Emery C, Bénéteau E, Metzger E, Dupuy C. Sediment implication in shift in nutrient limitation and impact on purification capacity: Application on a common Atlantic east coast pond. THE SCIENCE OF THE TOTAL ENVIRONMENT 2025; 975:179308. [PMID: 40184999 DOI: 10.1016/j.scitotenv.2025.179308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2025] [Revised: 03/28/2025] [Accepted: 03/30/2025] [Indexed: 04/07/2025]
Abstract
Salt marshes are widely recognized as regulation areas of nutrient flows to the ocean. However, poor knowledge of nutrient dynamics in these environments counteracts the understanding of nutrient regulation within the land-sea continuum, previous works mainly focusing on the water compartment. To overcome this gap, an experimental pond was monthly (open system) and weekly (closed system) monitored between February and October 2021. Bio(geo)chemical parameters (in water and sediment) and nutrient fluxes at the sediment-water interface (SWI) were relevantly explored to highlight the coupling between the benthic and pelagic compartments. A significant shift from P limitation (February-June period) to N limitation (July-October period) was observed and attributed to the phosphate mobilization (named soluble reactive phosphorus, SRP) processes in the sediment and its effluxes toward the water column. This SRP mobilization was strongly linked to the respiration of iron oxides for mineralization of organic matter (OM) and anammox processes. Surprising high carbon production in September (>1200 mgC m-3 d-1) in a low nutrient concentration range indicated significant regenerated N production and potentially new P production. Monitoring in enclosed system indicated a 3-week water retention time for a maximum nutrient removal and minimal impact for water export to the coastal waters. In non-bloom period, sediment SRP efflux from the sediment could contribute up to 40 % of SRP increase in the water column in September and to 60 % of the P-production demand in October. This work highlighted the importance of sediment for water nutrient re-supply and the temporality of water retention time in pond system to optimize purification effect and limit risks of eutrophication in coastal waters. While the eutrophication potential associated with nitrogen seemed to be reduced in such pond, that of phosphorus needs to be more considered.
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Affiliation(s)
- Raphaël Moncelon
- Laboratoire LIENSs, UMR 7266, La Rochelle Université, Bâtiment ILE, 2 Rue Olympe de Gouges, La Rochelle, France.
| | - Charlotte de Lignières
- Laboratoire LIENSs, UMR 7266, La Rochelle Université, Bâtiment ILE, 2 Rue Olympe de Gouges, La Rochelle, France
| | - Philippe Pineau
- Laboratoire LIENSs, UMR 7266, La Rochelle Université, Bâtiment ILE, 2 Rue Olympe de Gouges, La Rochelle, France
| | - Claire Emery
- Laboratoire LIENSs, UMR 7266, La Rochelle Université, Bâtiment ILE, 2 Rue Olympe de Gouges, La Rochelle, France
| | - Eric Bénéteau
- Laboratoire de Planétologie et Géosciences UMR 6112, CNRS, Université d'Angers, Nantes Université, Le Mans Université, Angers, France
| | - Edouard Metzger
- Laboratoire de Planétologie et Géosciences UMR 6112, CNRS, Université d'Angers, Nantes Université, Le Mans Université, Angers, France
| | - Christine Dupuy
- Laboratoire LIENSs, UMR 7266, La Rochelle Université, Bâtiment ILE, 2 Rue Olympe de Gouges, La Rochelle, France
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Yan W, Wang N, Wang Z, Shi J, Tang T, Liu L. Nitrogen removal characteristics and mechanism of the aerobic denitrifying bacterium Stutzerimonas stutzeri os3 isolated from shrimp aquaculture sediment. MARINE POLLUTION BULLETIN 2025; 214:117711. [PMID: 39978129 DOI: 10.1016/j.marpolbul.2025.117711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Revised: 12/09/2024] [Accepted: 02/17/2025] [Indexed: 02/22/2025]
Abstract
To overcome the limitations of denitrification under high dissolved oxygen conditions, an efficient aerobic denitrifier, Stutzerimonas stutzeri os3, was isolated from shrimp aquaculture sediment. The strain os3 achieved complete removal of nitrate without significant nitrite accumulation, when sodium citrate was used as the carbon source, with a C/N ratio of 5, and at a shaking speed of 50 r/min. Moreover, the strain os3 demonstrated a high TIN removal efficiency, reaching 98.29 % - 99.28 % under various nitrogen sources. Whole-genome sequencing revealed the presence of denitrification genes (napAB, nirS, norBC and nosZ) in the strain os3, which combined with nitrogen balance analysis, confirmed that the strain os3 primarily utilized aerobic denitrification for nitrate removal under aerobic conditions, as follows: NO3--N→NapABNO2--N→NirSNO→NorBCN2O→NosZN2. Furthermore, the strain os3 significantly increased the removal efficiencies of TIN and NO3--N in shrimp aquaculture wastewater, reaching 90.20 % and 94.43 %, respectively. Therefore, the strain os3 contributes to enhancing aerobic denitrification, providing a biotechnological solution for improving nitrogen cycling in shrimp aquaculture water.
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Affiliation(s)
- Weizhi Yan
- Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Na Wang
- Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhi Wang
- Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China
| | - Jiping Shi
- Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China; Shanghai Engineering Research Center of Biotransformation of Organic Solid Waste, Shanghai 200241, China
| | - Tao Tang
- Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China.
| | - Li Liu
- Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China; Shanghai Engineering Research Center of Biotransformation of Organic Solid Waste, Shanghai 200241, China.
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6
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Tang W, Fortin SG, Intrator N, Lee JA, Kunes MA, Jayakumar A, Haynes SJ, Oleynik S, Sigman DM, Ward BB. Similar Oxygen Sensitivities of Different Steps of Denitrification in Estuarine Waters. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025; 59:7165-7175. [PMID: 40184320 DOI: 10.1021/acs.est.5c02248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/06/2025]
Abstract
Hypoxia is observed and projected to expand in many aquatic environments, largely due to excess anthropogenic nutrient inputs and climate change, thus influencing biogeochemical processes. Denitrification, generally an anaerobic process, removes bioavailable nitrogen and produces nitrous oxide (N2O). However, limited observations of the effect of oxygen on denitrification restrict our ability to estimate changes in the amount of bioavailable nitrogen and N2O emissions under anthropogenic perturbations and climate change. Here, we show that all denitrification steps increased, while the N2O production yield from denitrification decreased with decreasing oxygen in Chesapeake Bay - the largest estuary in the United States. The different steps of denitrification responded similarly to oxygen changes in Chesapeake Bay, unlike open ocean oxygen minimum zones, with implications for the accumulation or depletion of denitrification intermediates such as nitrite and N2O. Our observations also suggest that current model parametrizations of denitrification in Chesapeake Bay likely overestimate denitrification and nitrogen removal in the presence of oxygen, which would bias the evaluation of nutrient cycling, ecosystem productivity, and the extent of hypoxia. Overall, our newly derived oxygen sensitivities of denitrification could be used to improve model parametrizations of denitrification and constrain the nitrogen budget and N2O emissions in estuarine and coastal environments experiencing hypoxia.
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Affiliation(s)
- Weiyi Tang
- Department of Geosciences, Princeton University, Princeton, New Jersey 08544, United States
- College of Marine Science, University of South Florida, St Petersburg, Florida 33701, United States
| | - Samantha G Fortin
- Department of Geosciences, Princeton University, Princeton, New Jersey 08544, United States
| | - Naomi Intrator
- Department of Geosciences, Princeton University, Princeton, New Jersey 08544, United States
| | - Jenna A Lee
- Department of Geosciences, Princeton University, Princeton, New Jersey 08544, United States
| | - Moriah A Kunes
- Department of Geosciences, Princeton University, Princeton, New Jersey 08544, United States
| | - Amal Jayakumar
- Department of Geosciences, Princeton University, Princeton, New Jersey 08544, United States
| | - Shannon J Haynes
- Department of Geosciences, Princeton University, Princeton, New Jersey 08544, United States
| | - Sergey Oleynik
- Department of Geosciences, Princeton University, Princeton, New Jersey 08544, United States
| | - Daniel M Sigman
- Department of Geosciences, Princeton University, Princeton, New Jersey 08544, United States
| | - Bess B Ward
- Department of Geosciences, Princeton University, Princeton, New Jersey 08544, United States
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7
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Qi Y, Fu R, Yan C, Liu X, Liu N. Enrichment of a heterotrophic nitrifying and aerobic denitrifying bacterial consortium: Microbial community succession and nitrogen removal characteristics and mechanisms. BIORESOURCE TECHNOLOGY 2025; 419:132013. [PMID: 39719199 DOI: 10.1016/j.biortech.2024.132013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2024] [Revised: 12/20/2024] [Accepted: 12/20/2024] [Indexed: 12/26/2024]
Abstract
This study cultivated a bacterial consortium (S60) from landfill leachate that exhibited effective heterotrophic nitrification and aerobic denitrification (HN-AD) properties. Under aerobic conditions, the removal of NH4+-N reached 100 % when the S60 consortium utilised NH4+-N either as the sole nitrogen source or in combination with NO2--N and NO3--N. Optimal HN-AD performance was achieved with sodium acetate as a carbon source and a pH of 7.0-8.0, dissolved oxygen concentration of 4.0-5.0 mg/L, and a C/N ratio of 10. Furthermore, the presence of functional genes (amoA, hao, napA, nirK, nirS, nosZ), hydroxylamine oxidase, nitrate reductase, and nitrite reductase was confirmed in the S60 consortium. Drawing from these findings, two HN-AD pathways were delineated: NH4+-N → NH2OH → NO2--N → NO3--N → NO2--N → NO → N2O → N2 and NH4+-N → NH2OH → N2O → N2. Metagenomic binning analysis of the S60 consortium uncovered complete pathways for dissimilatory nitrate reduction and denitrification within Halomonas, Zobellella, Stutzerimonas, Marinobacter, and Pannonibacter. These findings offer new insights into the application of HN-AD bacteria and their collaborative nitrogen removal in environments with varying nitrogen sources.
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Affiliation(s)
- Yuqi Qi
- Department of Ecology, College of Life Science and Technology, Jinan University, Guangzhou 510632, Guangdong, China
| | - Renchuan Fu
- College of Environment and Climate, Jinan University, Guangzhou 510632, Guangdong, China
| | - Chao Yan
- College of Environment and Climate, Jinan University, Guangzhou 510632, Guangdong, China
| | - Xiao Liu
- Department of Ecology, College of Life Science and Technology, Jinan University, Guangzhou 510632, Guangdong, China
| | - Na Liu
- Department of Ecology, College of Life Science and Technology, Jinan University, Guangzhou 510632, Guangdong, China.
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Bhadra S, Raghavan V, Sevda S. Effect of increased cathodic nitrogen levels on anodic COD removal efficiency and bioelectricity generation in microbial fuel cells. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2025; 32:9142-9163. [PMID: 40113658 DOI: 10.1007/s11356-025-36294-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Accepted: 03/14/2025] [Indexed: 03/22/2025]
Abstract
Simultaneous nitrification and denitrification (SND) of nitrogen-rich wastewater in microbial fuel cells (MFCs) is a new-age technology capable of treating wastewater and concurrently generating bioelectricity. Compared to the conventionally used biological nitrogen elimination processes, SND in MFC is much more energy and cost-efficient because it uses less organic carbon and excludes the nitrified liquid circulation process. In this work with a dual-chambered MFC, carbon-rich synthetic wastewater (CRSW) with an invariable glucose concentration of 2 g/L has been treated in the anodic chamber and nitrogen-rich synthetic wastewater (NRSW) containing 1 g/L, 2 g/L, and 3 g/L ammonium chloride (NH4Cl) concentration has been treated in the cathodic chamber and concurrently bioelectricity has been generated. Results showed that CCV-2 with 2 g/L NH4Cl load in closed circuit (CCV) mode generated the highest cell voltage, current density, and volumetric power density of 80.56 mV, 23.69 mA/m2, and 12.97 mW/m3. Removal of chemical oxygen demand (COD), total Kjeldahl nitrogen (TKN), nitrite, and nitrate was also highest in CCV-2 being 90.25%, 92.18%, 85.78%, and 86.53% respectively. With further increment of NH4Cl concentration to 3 g/L concentration there was a decrement in COD, TKN, nitrite, nitrate, and power generation output because TKN concentration higher than 3 g/L slowed down the growth of exoelectrogenic bacteria and decreased organic and nitrogen removal rate along with power output. All experiments in CCV mode gave better results than their counterparts operated in open circuit (OCV) mode. In microbial community structure analysis, the dominant genus was found to be Brevendimonas, Sphingomonadaceae, and Achromobacter in the cathodic chamber treating NRSW.
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Affiliation(s)
- Sudipa Bhadra
- Environmental Bioprocess Laboratory, Department of Biotechnology, National Institute of Technology Warangal, Warangal, 506004, Telangana State, India
| | - Vijaya Raghavan
- Department of Bioresource Engineering, Faculty of Agricultural and Environmental Sciences, Mcgill University, Sainte-Anne-de-Bellevue, QC, H9X3V9, Canada
| | - Surajbhan Sevda
- Environmental Bioprocess Laboratory, Department of Biotechnology, National Institute of Technology Warangal, Warangal, 506004, Telangana State, India.
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9
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Zhang M, He T, Wu P, Wang C, Zheng C. Recent advances in the nitrogen cycle involving actinomycetes: Current situation, prospect and challenge. BIORESOURCE TECHNOLOGY 2025; 419:132100. [PMID: 39848446 DOI: 10.1016/j.biortech.2025.132100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2024] [Revised: 12/12/2024] [Accepted: 01/20/2025] [Indexed: 01/25/2025]
Abstract
Actinomycetes are essential for sustaining the ecosystem's nitrogen balance and stimulating plant development. In contrast, existing detection and culture techniques for actinomycetes are still limited, making it difficult to fully assess their role in the nitrogen cycle. This review emphasized the advantages of actinomycetes in ecological restoration, outlined the current status and challenges of research on nitrogen cycling by actinomycetes. Special attention was paid to the metabolic pathways and related gene regulatory mechanisms of nitrogen fixation, nitrification, denitrification, dissimilatory nitrate reduction to ammonium, and ammonium assimilation processes. The limitations and strategies of actinomycetes nitrogen metabolic pathways were revealed. In addition, the involvement of carbon, sulphur and phosphorus in the nitrogen cycle of actinomycetes was pointed out. The aim of the review is to improve our understanding of the function of actinomycetes in the nitrogen cycle, which is crucial for enhancing wastewater treatment, ecological preservation, and agricultural output.
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Affiliation(s)
- Manman Zhang
- Key laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), College of Life Sciences, Key Laboratory of Karst Georesources and Environment (Guizhou University), Ministry of Educatio, Guizhou University, Guiyang 550025 Guizhou Province, China
| | - Tengxia He
- Key laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), College of Life Sciences, Key Laboratory of Karst Georesources and Environment (Guizhou University), Ministry of Educatio, Guizhou University, Guiyang 550025 Guizhou Province, China.
| | - Pan Wu
- Key laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), College of Life Sciences, Key Laboratory of Karst Georesources and Environment (Guizhou University), Ministry of Educatio, Guizhou University, Guiyang 550025 Guizhou Province, China
| | - Cerong Wang
- Key laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), College of Life Sciences, Key Laboratory of Karst Georesources and Environment (Guizhou University), Ministry of Educatio, Guizhou University, Guiyang 550025 Guizhou Province, China
| | - Chunxia Zheng
- Key laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), College of Life Sciences, Key Laboratory of Karst Georesources and Environment (Guizhou University), Ministry of Educatio, Guizhou University, Guiyang 550025 Guizhou Province, China
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10
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Wang W, Bi S, Li F, Degen AA, Li S, Huang M, Luo B, Zhang T, Qi S, Qi T, Bai Y, Liu P, Shang Z. Soil organic matter composition affects ecosystem multifunctionality by mediating the composition of microbial communities in long-term restored meadows. ENVIRONMENTAL MICROBIOME 2025; 20:22. [PMID: 39923116 PMCID: PMC11807318 DOI: 10.1186/s40793-025-00678-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2024] [Accepted: 01/24/2025] [Indexed: 02/10/2025]
Abstract
BACKGROUND Soil organic matter composition and microbial communities are key factors affecting ecosystem multifunctionality (EMF) during ecosystem restoration. However, there is little information on their interacting mechanisms in degraded and restored meadows. To fill this knowledge gap, plant, root and soil samples from alpine swamp meadows, alpine Kobresia meadows, severely degraded alpine meadows, short-term restored meadows (< 5 years) and long-term restored meadows (6-14 years) were collected. We leveraged high-throughput sequencing, liquid chromatography and mass spectrometry to characterize soil microbial communities and soil organic matter composition, measured microbial carbon metabolism and determined EMF. RESULTS It emerged that the similarity of soil microorganisms in meadows decreased with increasing heterogeneity of soil properties. Dispersal limitation and ecological drift led to the homogenization of the bacterial community. Based on co-occurrence network analysis, an increase in microbial network complexity promoted EMF. Root total phosphorus and soil organic matter components were the key predictors of EMF, while organic acids and phenolic acids increased the stability of the microbial network in long-term restored meadows. Carbon metabolism did not increase in restored meadows, but the niche breadth of soil microorganisms and the utilization efficiency of small molecular carbon sources such as amino acids did increase. CONCLUSIONS These findings emphasize the importance of soil organic matter composition in ecological restoration and that the composition should be considered in management strategies aimed at enhancing EMF.
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Affiliation(s)
- Wenyin Wang
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, 730000, China
| | - Sisi Bi
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, 730000, China
| | - Fei Li
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, 730000, China
| | - A Allan Degen
- Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, 8410500, Beer Sheva, Israel
| | - Shanshan Li
- Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, 810008, China
| | - Mei Huang
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, 730000, China
| | - Binyu Luo
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, 730000, China
| | - Tao Zhang
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, 730000, China
| | - Shuai Qi
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, 730000, China
| | - Tianyun Qi
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, 730000, China
| | - Yanfu Bai
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, 730000, China
| | - Peipei Liu
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, 730000, China
| | - Zhanhuan Shang
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, 730000, China.
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11
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Ahn S, Cho M, Sadowsky MJ, Jang J. Dissimilatory nitrate reductions in soil Neobacillus and Bacillus strains under aerobic condition. J Microbiol 2025; 63:e2411019. [PMID: 40044136 DOI: 10.71150/jm.2411019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2024] [Accepted: 01/09/2025] [Indexed: 05/13/2025]
Abstract
Denitrification and dissimilatory nitrate reduction to ammonium (DNRA) were thought to be carried-out by anaerobic bacteria constrained to anoxic conditions as they use nitrate (NO3-) as a terminal electron acceptor instead of molecular O2. Three soil bacilli, Neobacillus spp. strains PS2-9 and PS3-12 and Bacillus salipaludis PS3-36, were isolated from rice paddy field soil in Korea. The bacterial strains were selected as possible candidates performing aerobic denitrification and DNRA as they observed to reduce NO3- and produce extracellular NH4+ regardless of oxygen presence at the initial screening. Whole genome sequencing revealed that these strains possessed all the denitrification and DNRA functional genes in their genomes, including the nirK, nosZ, nirB, and nrfA genes, which were simultaneously cotranscribed under aerobic condition. The ratio between the assimilatory and dissimilatory NO3- reduction pathways depended on the availability of a nitrogen source for cell growth, other than NO3-. Based on the phenotypic and transcriptional analyses of the NO3- reductions, all three of the facultative anaerobic strains reduced NO3- likely in both assimilatory and dissimilatory pathways under both aerobic and anoxic conditions. To our knowledge, this is the first report that describes coexistence of NO3- assimilation, denitrification, and DNRA in a Bacillus or Neobacillus strain under aerobic condition. These strains may play a pivotal role in the soil nitrogen cycle.
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Affiliation(s)
- Seohyun Ahn
- Division of Biotechnology and Advanced Institute of Environment and Bioscience, Jeonbuk National University, Jeonbuk 54596, Republic of Korea
| | - Min Cho
- Division of Biotechnology and Advanced Institute of Environment and Bioscience, Jeonbuk National University, Jeonbuk 54596, Republic of Korea
| | - Michael J Sadowsky
- BioTechnology Institute, Department of Soil, Water & Climate, and Department of Microbial and Plant Biology, University of Minnesota, Minnesota 55108, USA
| | - Jeonghwan Jang
- Division of Biotechnology and Advanced Institute of Environment and Bioscience, Jeonbuk National University, Jeonbuk 54596, Republic of Korea
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12
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Fan Y, Gao Z, Liang X, Liu C, Zhang W, Dai Y, Geng S, Chen M, Yang Q, Li X, Xie J. Impacts of O 2:CH 4 ratios and CH 4 concentrations on the denitrification and CH 4 oxidations of a novel AME-AD system. ENVIRONMENTAL RESEARCH 2024; 262:119866. [PMID: 39208973 DOI: 10.1016/j.envres.2024.119866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2024] [Revised: 07/08/2024] [Accepted: 08/26/2024] [Indexed: 09/04/2024]
Abstract
Aerobic methane (CH4) oxidation coupled to denitrification (AME-D) is a promising process for the denitrification of low C/N wastewater. Compared with anaerobic denitrifying bacteria, aerobic denitrifying bacteria may enable AME-D have high denitrification ability under aerobic conditions. This study constructed a novel aerobic methane oxidation coupled to aerobic denitrification (AME-AD) system using the typical aerobic denitrifying bacteria Paracoccus pantotrophus ATCC35512 and the typical aerobic methane oxidizing bacteria Methylosinus trichosporium OB3b. The denitrification and CH4 oxidations of AME-AD with different O2:CH4 ratios (0:1, 0.25:1, 0.5:1, 0.75:1, 1:1 and 1.25:1) and CH4 concentrations (0, 14000, 28000, 42000, 56000 and 70000 mg m-3) were investigated in batch experiments. Higher O2:CH4 ratios can significantly improve the denitrification and CH4 oxidations of the AME-AD (P < 0.05). The treatment with an O2:CH4 ratio of 1.25:1 had the highest denitrification rate (0.036 mg h-1) and highest CH4 oxidation rate (0.20 mg h-1). The CH4 concentration in the headspace was positively correlated with the AME-AD denitrification rate. The calculated CH4/NO3-(mol/mol) in most treatments ranged from 5.76 to 6.84. In addition, excessively high O2 and CH4 concentrations can lead to increased nitrous oxide (N2O) production in AME-AD. The N2O production rate was up to 1.00 μg h-1 when the O2:CH4 was 1.25:1. These results can provide data support for the application of AME-AD for low-C/N wastewater treatment and greenhouse gas emission reduction.
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Affiliation(s)
- Yujing Fan
- College of Resources and Environmental Sciences, Hebei Agricultural University, Baoding, 071000, PR China; Key Laboratory for Farmland Eco-Environment of Hebei Province, Baoding, 071000, PR China
| | - Zhiling Gao
- College of Resources and Environmental Sciences, Hebei Agricultural University, Baoding, 071000, PR China; Key Laboratory for Farmland Eco-Environment of Hebei Province, Baoding, 071000, PR China
| | - Xueyou Liang
- College of Resources and Environmental Sciences, Hebei Agricultural University, Baoding, 071000, PR China; Key Laboratory for Farmland Eco-Environment of Hebei Province, Baoding, 071000, PR China
| | - Chunjing Liu
- College of Resources and Environmental Sciences, Hebei Agricultural University, Baoding, 071000, PR China; Key Laboratory for Farmland Eco-Environment of Hebei Province, Baoding, 071000, PR China.
| | - Weitao Zhang
- General Husbandry Station of Hebei Province, Shijiazhuang, 050000, PR China
| | - Yufei Dai
- College of Resources and Environmental Sciences, Hebei Agricultural University, Baoding, 071000, PR China; Key Laboratory for Farmland Eco-Environment of Hebei Province, Baoding, 071000, PR China
| | - Shicheng Geng
- College of Resources and Environmental Sciences, Hebei Agricultural University, Baoding, 071000, PR China; Key Laboratory for Farmland Eco-Environment of Hebei Province, Baoding, 071000, PR China
| | - Miaomiao Chen
- College of Resources and Environmental Sciences, Hebei Agricultural University, Baoding, 071000, PR China; Key Laboratory for Farmland Eco-Environment of Hebei Province, Baoding, 071000, PR China
| | - Qing Yang
- College of Resources and Environmental Sciences, Hebei Agricultural University, Baoding, 071000, PR China; Key Laboratory for Farmland Eco-Environment of Hebei Province, Baoding, 071000, PR China
| | - Xiang Li
- College of Resources and Environmental Sciences, Hebei Agricultural University, Baoding, 071000, PR China; Key Laboratory for Farmland Eco-Environment of Hebei Province, Baoding, 071000, PR China
| | - Jianzhi Xie
- College of Resources and Environmental Sciences, Hebei Agricultural University, Baoding, 071000, PR China; Key Laboratory for Farmland Eco-Environment of Hebei Province, Baoding, 071000, PR China
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13
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Wang D, Li XY, Li A. Natural bioink of interpenetrating network hydrogels mimicking extracellular polymeric substances for microbial immobilization in water pollution control. ENVIRONMENTAL RESEARCH 2024; 262:119856. [PMID: 39197485 DOI: 10.1016/j.envres.2024.119856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Revised: 08/13/2024] [Accepted: 08/26/2024] [Indexed: 09/01/2024]
Abstract
Artificial biomanufacturing has been developed as a promising biotechnology for water pollution control. Effective bioimmobilization techniques are limited in application because of low productivity and the difficulty in achieving both mechanical strength and biocompatibility. Bioprinting technology, using biomaterials as bioink to enable the rapid on-demand production of bioactive structures, opens a new path for bioimmobilization. In this study, mimicking extracellular polysaccharide and protein of aerobic granular sludge (AGS), sodium alginate (SA) and silk fibroin methacryloyl (SilMA) were developed as the dual-component bioink with a suitable viscosity for bioprinting hydrogel. Interpenetrating network (IPN) hydrogel beads were manufactured using 1.5% (w/v) SA combined with 20% (w/v) SilMA through physical and covalent crosslinking, which exhibited excellent structural stability and bioactivity. The addition of SilMA provided a solution to the poor mechanical stability of SA-Ca hydrogels limited by Ca2+-Na+ ionic exchange. The unique structure of SilMA contributed to the reduction of hydrogel swelling as well as the prevention of SA loss. IPN hydrogels showed a swelling rate of less than 20% compared to the high swelling rate of more than 60% for SA hydrogels. On the other hand, SA controlled the hardening induced by excessive self-assembly of SilMA and improved mass transport in SilMA hydrogels. Compared to IPN hydrogels, SilMA hydrogels experienced a 15% volumetric shrinkage and exhibited a low water content of 92%. Sonication pretreatment of the dual-component bioink not only increased the intermolecular chain entanglement to form IPN, but also led to β-sheet content in SiMA reaching 46%-48%, which resulted in the formation of stable IPN hydrogels dominated entirely by physical crosslinking. Satisfactory proliferation and viability were achieved for the encapsulated bacteria in IPN hydrogels (μmax 1.49-2.18 d-1). Further, the IPN biohydrogels could maintain structural stability as well as achieve pollutant removal for treating synthetic wastewater with high Na+ concentration of 300 mg/L. The novel SA/SilMA hydrogel bioprinting strategy established in this study offers a new direction for bioimmobilization in water pollution control and other environmental applications.
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Affiliation(s)
- Danyang Wang
- Key Laboratory of Water and Sediment Sciences of Ministry of Education / State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, 100875, China
| | - Xiao-Yan Li
- Shenzhen Engineering Research Laboratory for Sludge and Food Waste Treatment and Resource Recovery, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen, 518055, China; Environmental Engineering Research Centre, Department of Civil Engineering, The University of Hong Kong, Pokfulam, Hong Kong, China
| | - Anjie Li
- Key Laboratory of Water and Sediment Sciences of Ministry of Education / State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, 100875, China.
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14
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Madrigal-Solís H, Vadillo-Pérez I, Jiménez-Gavilán P, Fonseca-Sánchez A, Quesada-Hernández L, Calderón-Sánchez H, Gómez-Cruz A, Murillo JH, Salazar RP. A multidisciplinary approach using hydrogeochemistry, δ 15N NO3 isotopes, land use, and statistical tools in evaluating nitrate pollution sources and biochemical processes in Costa Rican volcanic aquifers. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 951:174996. [PMID: 39067595 DOI: 10.1016/j.scitotenv.2024.174996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Revised: 07/12/2024] [Accepted: 07/21/2024] [Indexed: 07/30/2024]
Abstract
Nitrate pollution threatens the Barva and Colima multi-aquifer system, the primary drinking water source in the Greater Metropolitan Area of Costa Rica. In addressing nitrate contamination dynamics, this study proposes an integrated approach by combining multivariate statistical analyses, hydrochemical parameters, sewage discharge, and regional land-use and land-cover patterns to assess the extent and degree of contamination, dominant biogeochemical processes, and refine the interpretation of nitrate sources previously derived solely from δ15NNO3 information. Over seven years (2015-2022), 714 groundwater samples from 43 sites were analyzed for nitrate and major ions, including two sampling campaigns for dissolved organic and inorganic carbon, nitrite, ammonium, FeTotal, MnTotal, and δ15NNO3 analyses. The findings presented elevated nitrate concentrations in urban and agricultural/urban areas, surpassing the Maximum Concentration Levels on several occasions, and oxidizing conditions favoring mineralization and nitrification processes in unconfined Barva and locally confined Upper Colima/Lower Colima aquifers. Similar nitrate contents and spatial patterns in agricultural and urban zones in the shallow Barva aquifer suggest comparable contributions from nitrogen fertilizers and urban wastewaters despite the gradual increase in urban land cover and the reduction of agricultural areas. Isotopic analyses and dissolved organic carbon (DOC) indicate a shift in nitrate sources from agricultural to urban areas in both Barva and Colima aquifers. Principal Component and Hierarchical Cluster Analyses link land use, nitrate sources, and water quality. Three distinct sample clusters aligned with forest/grassland, agricultural/urban, and urban land use, emphasizing the impact of anthropogenic activities on groundwater quality, even in the deeper Colima aquifers. The study challenges nitrate isotope mixing models, enhancing accuracy in identifying pollution sources and assessing the spatial extent of contamination by incorporating DOC and other hydrochemical parameters. Similar outcomes, with and without the use of nitrate isotopes, reinforce the usefulness of the integrated approach, providing a practical and cost-effective alternative.
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Affiliation(s)
- Helga Madrigal-Solís
- Programa de Hidrología Ambiental, Escuela de Ciencias Biológicas, Universidad Nacional, 40101, Heredia, Costa Rica.
| | - Iñaki Vadillo-Pérez
- Grupo de Hidrogeología, Departamento de Ecología y Geología, Universidad de Málaga, 29016 Málaga, Spain
| | - Pablo Jiménez-Gavilán
- Grupo de Hidrogeología, Departamento de Ecología y Geología, Universidad de Málaga, 29016 Málaga, Spain
| | - Alicia Fonseca-Sánchez
- Programa de Hidrología Ambiental, Escuela de Ciencias Biológicas, Universidad Nacional, 40101, Heredia, Costa Rica
| | - Luis Quesada-Hernández
- Programa de Hidrología Ambiental, Escuela de Ciencias Biológicas, Universidad Nacional, 40101, Heredia, Costa Rica
| | - Hazel Calderón-Sánchez
- Programa de Hidrología Ambiental, Escuela de Ciencias Biológicas, Universidad Nacional, 40101, Heredia, Costa Rica
| | - Alicia Gómez-Cruz
- Programa de Hidrología Ambiental, Escuela de Ciencias Biológicas, Universidad Nacional, 40101, Heredia, Costa Rica
| | - Jorge Herrera Murillo
- Laboratorio de Análisis Ambiental, Escuela de Ciencias Ambientales, Universidad Nacional, 40101, Heredia, Costa Rica
| | - Roy Pérez Salazar
- Laboratorio de Gestión de Desechos y Aguas Residuales (LAGEDE), Escuela de Química, Universidad Nacional, 40101, Heredia, Costa Rica
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15
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Rajeev M, Jung I, Kang I, Cho JC. Genome-centric metagenomics provides insights into the core microbial community and functional profiles of biofloc aquaculture. mSystems 2024; 9:e0078224. [PMID: 39315779 PMCID: PMC11494986 DOI: 10.1128/msystems.00782-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Accepted: 09/06/2024] [Indexed: 09/25/2024] Open
Abstract
Bioflocs are microbial aggregates that play a pivotal role in shaping animal health, gut microbiota, and water quality in biofloc technology (BFT)-based aquaculture systems. Despite the worldwide application of BFT in aquaculture industries, our comprehension of the community composition and functional potential of the floc-associated microbiota (FAB community; ≥3 µm size fractions) remains rudimentary. Here, we utilized genome-centric metagenomic approach to investigate the FAB community in shrimp aquaculture systems, resulting in the reconstruction of 520 metagenome-assembled genomes (MAGs) spanning both bacterial and archaeal domains. Taxonomic analysis identified Pseudomonadota and Bacteroidota as core community members, with approximately 93% of recovered MAGs unclassified at the species level, indicating a large uncharacterized phylogenetic diversity hidden in the FAB community. Functional annotation of these MAGs unveiled their complex carbohydrate-degrading potential and involvement in carbon, nitrogen, and sulfur metabolisms. Specifically, genomic evidence supported ammonium assimilation, autotrophic nitrification, denitrification, dissimilatory nitrate reduction to ammonia, thiosulfate oxidation, and sulfide oxidation pathways, suggesting the FAB community's versatility for both aerobic and anaerobic metabolisms. Conversely, genes associated with heterotrophic nitrification, anaerobic ammonium oxidation, assimilatory nitrate reduction, and sulfate reduction were undetected. Members of Rhodobacteraceae emerged as the most abundant and metabolically versatile taxa in this intriguing community. Our MAGs compendium is expected to expand the available genome collection from such underexplored aquaculture environments. By elucidating the microbial community structure and metabolic capabilities, this study provides valuable insights into the key biogeochemical processes occurring in biofloc aquacultures and the major microbial contributors driving these processes. IMPORTANCE Biofloc technology has emerged as a sustainable aquaculture approach, utilizing microbial aggregates (bioflocs) to improve water quality and animal health. However, the specific microbial taxa within this intriguing community responsible for these benefits are largely unknown. Compounding this challenge, many bacterial taxa resist laboratory cultivation, hindering taxonomic and genomic analyses. To address these gaps, we employed metagenomic binning approach to recover over 500 microbial genomes from floc-associated microbiota of biofloc aquaculture systems operating in South Korea and China. Through taxonomic and genomic analyses, we deciphered the functional gene content of diverse microbial taxa, shedding light on their potential roles in key biogeochemical processes like nitrogen and sulfur metabolisms. Notably, our findings underscore the taxa-specific contributions of microbes in aquaculture environments, particularly in complex carbon degradation and the removal of toxic substances like ammonia, nitrate, and sulfide.
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Affiliation(s)
- Meora Rajeev
- Department of Biological Sciences and Bioengineering, Inha University, Incheon, South Korea
- Institute for Specialized Teaching and Research, Inha University, Incheon, South Korea
| | - Ilsuk Jung
- Department of Biological Sciences and Bioengineering, Inha University, Incheon, South Korea
| | - Ilnam Kang
- Department of Biological Sciences and Bioengineering, Inha University, Incheon, South Korea
- Center for Molecular and Cell Biology, Inha University, Incheon, South Korea
| | - Jang-Cheon Cho
- Department of Biological Sciences and Bioengineering, Inha University, Incheon, South Korea
- Center for Molecular and Cell Biology, Inha University, Incheon, South Korea
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16
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Xu S, Li R, Liao Y, Bian J, Liu R, Liu H. Biodegradation of organic micropollutants by anoxic denitrification: Roles of extracellular polymeric substance adsorption, enzyme catalysis, and reactive oxygen species oxidation. WATER RESEARCH 2024; 268:122563. [PMID: 39388777 DOI: 10.1016/j.watres.2024.122563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2024] [Revised: 09/12/2024] [Accepted: 10/01/2024] [Indexed: 10/12/2024]
Abstract
The control of organic micropollutants (OMPs) in water environments have received significant attention. Denitrification was reported to exhibit good efficiency to remove OMPs, and the mechanisms involved in are too intricate to be well illustrated. In this study, we selected nitrobenzene [NB] and bisphenol A [BPA] as model pollutants and aimed to unravel the mechanisms of Paracoccus Denitrificans in the removal of OMPs, with a specific emphasis on aerobic behavior during denitrification processes. We demonstrated the formation of extracellular superoxide radicals, i.e., extracellular •O2-, using a chemiluminescence probe and found that extracellular polymeric substance adsorption, extracellular •O2-, and microbial assimilation contributed approximately 40 %, 10 %, and 50 % to OMPs removal, respectively. Transcriptome analysis further revealed the high expression and enrichment of several pathways, such as drug metabolism-other enzymes, of which a typical aerobic enzyme of polyphenol oxidase [PPO] participates in the degradation of NB and BPA. Importantly, all the immediate products showed a significant decrease in toxicity during the aerobic activity-related OMPs degradation process based on the proposed degradation pathways. This study demonstrates the formation of extracellular •O2- and the mechanisms of extracellular •O2-- and PPO-mediated OMPs biodegradation, and offers new insights into OMPs control in widely-used denitrification treatment processes.
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Affiliation(s)
- Siqi Xu
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Rui Li
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Yang Liao
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Jiyong Bian
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Ruiping Liu
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China.
| | - Huijuan Liu
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
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17
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Huang ZS, Tan XQ, Yang HB, Zeng Y, Chen SJ, Wei ZS, Huang YQ. Mechanistic insights into tris(2-chloroisopropyl) phosphate biomineralization coupled with lead (II) biostabilization driven by denitrifying bacteria. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 945:173927. [PMID: 38901584 DOI: 10.1016/j.scitotenv.2024.173927] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 05/24/2024] [Accepted: 06/09/2024] [Indexed: 06/22/2024]
Abstract
The ubiquity and persistence of organophosphate esters (OPEs) and heavy metal (HMs) pose global environmental risks. This study explored tris(2-chloroisopropyl)phosphate (TCPP) biomineralization coupled to lead (Pb2+) biostabilization driven by denitrifying bacteria (DNB). The domesticated DNB achieved synergistic bioremoval of TCPP and Pb2+ in the batch bioreactor (efficiency: 98 %).TCPP mineralized into PO43- and Cl-, and Pb2+ precipitated with PO43-. The TCPP-degrading/Pb2+-resistant DNB: Achromobacter, Pseudomonas, Citrobacter, and Stenotrophomonas, dominated the bacterial community, and synergized TCPP biomineralization and Pb2+ biostabilization. Metagenomics and metaproteomics revealed TCPP underwent dechlorination, hydrolysis, the TCA cycle-based dissimilation, and assimilation; Pb2+ was detoxified via bioprecipitation, bacterial membrane biosorption, EPS biocomplexation, and efflux out of cells. TCPP, as an initial donor, along with NO3-, as the terminal acceptor, formed a respiratory redox as the primary energy metabolism. Both TCPP and Pb2+ can stimulate phosphatase expression, which established the mutual enhancements between their bioconversions by catalyzing TCPP dephosphorylation and facilitating Pb2+ bioprecipitation. TCPP may alleviate the Pb2+-induced oxidative stress by aiding protein phosphorylation. 80 % of Pb2+ converted into crystalized pyromorphite. These results provide the mechanistic foundations and help develop greener strategies for synergistic bioremediation of OPEs and HMs.
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Affiliation(s)
- Zhen-Shan Huang
- School of Environment, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety, MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
| | - Xiu-Qin Tan
- State Environmental Protection Key Laboratory of Water Environmental Simulation and Pollution Control, South China Institute of Environmental Sciences, MEE, Guangzhou 510530, China
| | - Han-Biao Yang
- School of Environment, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety, MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
| | - Yuan Zeng
- School of Environment, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety, MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
| | - She-Jun Chen
- School of Environment, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety, MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China.
| | - Zai-Shan Wei
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Guangzhou 510275, China
| | - Yu-Qi Huang
- School of Environment, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety, MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
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Mao J, Zhao R, Li Y, Qin W, Wu S, Xu W, Jin P, Zheng Z. Nitrogen removal capability and mechanism of a novel low-temperature-tolerant simultaneous nitrification-denitrification bacterium Acinetobacter kyonggiensis AKD4. Front Microbiol 2024; 15:1349152. [PMID: 39318430 PMCID: PMC11419981 DOI: 10.3389/fmicb.2024.1349152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Accepted: 08/30/2024] [Indexed: 09/26/2024] Open
Abstract
A low-temperature-tolerant simultaneous nitrification-denitrification bacterial strain of Acinetobacter kyonggiensis (AKD4) was identified. It showed high efficiency in total nitrogen (TN) removal (92.45% at 10°C and 87.51% at 30°C), indicating its excellent low-temperature tolerance. Transcriptomic analysis revealed possible metabolic mechanisms under low-temperature stress. Genes involved in cell growth, including ATP synthase (atpADGH), amino acid (glyA, dctA, and ilvE), and TCA cycle metabolism (gltA, fumC, and mdh) were remarkably upregulated from 1.05-3.44-fold at 10°C, suggesting that their actions enhance survivability at low temperatures. The expression levels of genes associated with nitrogen assimilation (glnAE, gltBD, and gdhA), nitrogen metabolism regulation (ntrC, glnB, and glnD), and denitrification processes (napA) were increased from 1.01-4.38-fold at 10°C, which might have contributed to the bacterium's highly efficient nitrogen removal performance at low temperatures. Overall, this study offers valuable insights into transcriptome, and enhances the comprehension of the low-temperature-tolerant mechanism of simultaneous nitrification and denitrification processes.
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Affiliation(s)
- Jiwei Mao
- School of Environmental & Resource, Zhejiang A & F University, Hangzhou, China
| | - Ruojin Zhao
- Zhejiang Sunda Public Environmental Protection Co., Ltd., Hangzhou, China
| | - Yiyi Li
- Zhejiang Sunda Public Environmental Protection Co., Ltd., Hangzhou, China
| | - Wenpan Qin
- Zhejiang Sunda Public Environmental Protection Co., Ltd., Hangzhou, China
| | - Shengchun Wu
- School of Environmental & Resource, Zhejiang A & F University, Hangzhou, China
- Zhejiang Sunda Public Environmental Protection Co., Ltd., Hangzhou, China
| | - Weiping Xu
- Zhejiang Sunda Public Environmental Protection Co., Ltd., Hangzhou, China
| | - Peng Jin
- College of Food and Health, Zhejiang A & F University, Hangzhou, China
| | - Zhanwang Zheng
- School of Environmental & Resource, Zhejiang A & F University, Hangzhou, China
- Zhejiang Sunda Public Environmental Protection Co., Ltd., Hangzhou, China
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19
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Ma B, Chu M, Zhang H, Chen K, Li F, Liu X, Kosolapov DB, Zhi W, Chen Z, Yang J, Deng Y, Sekar R, Liu T, Liu X, Huang T. Mixotrophic aerobic denitrification facilitated by denitrifying bacterial-fungal communities assisted with iron in micro-polluted water: Performance, metabolic activity, functional genes abundance, and community co-occurrence. JOURNAL OF HAZARDOUS MATERIALS 2024; 476:135057. [PMID: 38943884 DOI: 10.1016/j.jhazmat.2024.135057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Revised: 06/08/2024] [Accepted: 06/26/2024] [Indexed: 07/01/2024]
Abstract
Low-dosage nitrate pollutants can contribute to eutrophication in surface water bodies, such as lakes and reservoirs. This study employed assembled denitrifying bacterial-fungal communities as bio-denitrifiers, in combination with zero-valent iron (ZVI), to treat micro-polluted water. Immobilized bacterial-fungal mixed communities (IBFMC) reactors demonstrated their ability to reduce nitrate and organic carbon by over 43.2 % and 53.7 %, respectively. Compared to IBFMC reactors, IBFMC combined with ZVI (IBFMC@ZVI) reactors exhibited enhanced removal efficiencies for nitrate and organic carbon, reaching the highest of 31.55 % and 17.66 %, respectively. The presence of ZVI in the IBFMC@ZVI reactors stimulated various aspects of microbial activity, including the metabolic processes, electron transfer system activities, abundance of functional genes and enzymes, and diversity and richness of microbial communities. The contents of adenosine triphosphate and electron transfer system activities enhanced more than 5.6 and 1.43 folds in the IBFMC@ZVI reactors compared with IBFMC reactors. Furthermore, significant improvement of crucial genes and enzyme denitrification chains was observed in the IBFMC@ZVI reactors. Iron played a central role in enhancing microbial diversity and activity, and promoting the supply, and transfer of inorganic electron donors. This study presents an innovative approach for applying denitrifying bacterial-fungal communities combined with iron enhancing efficient denitrification in micro-polluted water.
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Affiliation(s)
- Ben Ma
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Mengting Chu
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Haihan Zhang
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China.
| | - Kaige Chen
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Fengrui Li
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Xiang Liu
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Dmitry B Kosolapov
- Papanin Institute for Biology of Inland Waters of Russian Academy of Sciences (IBIW RAS), 109, Borok, Nekouz, Yaroslavl 152742, Russia
| | - Wei Zhi
- Department of Civil and Environmental Engineering, the Pennsylvania State University, USA
| | - Zhongbing Chen
- Department of Applied Ecology, Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcká 129, Suchdol, Praha 16500, Czech Republic
| | - Jun Yang
- Aquatic EcoHealth Group, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China; Fujian Key Laboratory of Watershed Ecology, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
| | - Ye Deng
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China; CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China, University of Chinese Academy of Sciences, Beijing, China
| | - Raju Sekar
- Department of Biological Sciences, Xi'an Jiaotong-Liverpool University, Suzhou 215123, China
| | - Tao Liu
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Xiaoyan Liu
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Tinglin Huang
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
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20
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Wang H, Hu X, Elshobary M, Sobhi M, Zhu F, Cui Y, Xu X, Ni J, El-Sheekh M, Huo S. Integrated partial nitrification and Tribonema minus cultivation for cost-effective ammonia recovery and lipid production from slaughterhouse wastewater. CHEMICAL ENGINEERING JOURNAL 2024; 492:152199. [DOI: 10.1016/j.cej.2024.152199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/10/2024]
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21
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Murali R, Pace LA, Sanford RA, Ward LM, Lynes MM, Hatzenpichler R, Lingappa UF, Fischer WW, Gennis RB, Hemp J. Diversity and evolution of nitric oxide reduction in bacteria and archaea. Proc Natl Acad Sci U S A 2024; 121:e2316422121. [PMID: 38900790 PMCID: PMC11214002 DOI: 10.1073/pnas.2316422121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Accepted: 04/24/2024] [Indexed: 06/22/2024] Open
Abstract
Nitrous oxide is a potent greenhouse gas whose production is catalyzed by nitric oxide reductase (NOR) members of the heme-copper oxidoreductase (HCO) enzyme superfamily. We identified several previously uncharacterized HCO families, four of which (eNOR, sNOR, gNOR, and nNOR) appear to perform NO reduction. These families have novel active-site structures and several have conserved proton channels, suggesting that they might be able to couple NO reduction to energy conservation. We isolated and biochemically characterized a member of the eNOR family from the bacterium Rhodothermus marinus and found that it performs NO reduction. These recently identified NORs exhibited broad phylogenetic and environmental distributions, greatly expanding the diversity of microbes in nature capable of NO reduction. Phylogenetic analyses further demonstrated that NORs evolved multiple times independently from oxygen reductases, supporting the view that complete denitrification evolved after aerobic respiration.
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Affiliation(s)
- Ranjani Murali
- Department of Biochemistry, University of Illinois, Urbana-Champaign, Urbana, IL61801
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA91125
- School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV89154
| | - Laura A. Pace
- Department of Biochemistry, University of Illinois, Urbana-Champaign, Urbana, IL61801
- meliora.bio, Salt Lake City, UT84103
| | - Robert A. Sanford
- Department of Earth Science and Environmental Change, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - L. M. Ward
- Department of Geosciences, Smith College, Northampton, MA01063
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA91125
| | - Mackenzie M. Lynes
- Department of Chemistry and Biochemistry, Thermal Biology Institute, Montana State University, Bozeman, MT59717
- Center for Biofilm Enginering, Montana State University, Bozeman, MT59717
| | - Roland Hatzenpichler
- Department of Chemistry and Biochemistry, Thermal Biology Institute, Montana State University, Bozeman, MT59717
- Center for Biofilm Enginering, Montana State University, Bozeman, MT59717
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, MT59717
| | - Usha F. Lingappa
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA91125
- Department of Plant and Microbial Biology, University of California, Berkeley, CA94720
| | - Woodward W. Fischer
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA91125
| | - Robert B. Gennis
- Department of Biochemistry, University of Illinois, Urbana-Champaign, Urbana, IL61801
| | - James Hemp
- meliora.bio, Salt Lake City, UT84103
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA91125
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22
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Wu Z, Zhao T, Zhang Y, Wang Y, Chen P, Lu G, Huang S, Qiu G. Iron-enhanced microscale laboratory aerated filters in the treatment of artificial mariculture wastewater: A study on nitrogen removal performance and the impact on microbial community structure. CHEMOSPHERE 2024; 357:141854. [PMID: 38556181 DOI: 10.1016/j.chemosphere.2024.141854] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2024] [Revised: 03/11/2024] [Accepted: 03/28/2024] [Indexed: 04/02/2024]
Abstract
This study investigates the nitrogen removal efficacy and microbial community dynamics in seawater aquaculture effluent treatment using three different substrate combinations of microscale laboratory aerated filters (MFs) - MF1 (LECA), MF2 (LECA/Fe-C), and MF3 (LECA/Pyrite). The findings indicated that the COD removal exceeded 95% across all MFs, with higher removal efficiencies in MF2 and MF3. In terms of nitrogen removal performance, MF2 exhibited the highest average nitrogen removal of 93.17%, achieving a 12.35% and 3.56% increase compared to MF1 (80.82%) and MF3 (89.61%), respectively. High-throughput sequencing analysis revealed that the Fe-C substrate significantly enhanced the diversity of the microbial community. Notably, in MF2, the salinophilic denitrifying bacterium Halomonas was significantly enriched, accounting for 42.6% of the total microbial community, which was beneficial for nitrogen removal. Moreover, an in-depth analysis of nitrogen metabolic pathways and microbial enzymes indicated that MF2 and MF3 possessed a high abundance of nitrification and denitrification enzymes, related to the high removal rates of NH4+-N and NO3--N. Therefore, the combination of LECA with iron-based materials significantly enhances the nitrogen removal efficiency from mariculture wastewater.
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Affiliation(s)
- Zhipeng Wu
- School of Environment and Energy, South China University of Technology, Higher Education Mega Center, Guangzhou, 510006, China.
| | - Tianyu Zhao
- School of Environment and Energy, South China University of Technology, Higher Education Mega Center, Guangzhou, 510006, China.
| | - Yu Zhang
- School of Environment and Energy, South China University of Technology, Higher Education Mega Center, Guangzhou, 510006, China.
| | - Yanling Wang
- School of Environment and Energy, South China University of Technology, Higher Education Mega Center, Guangzhou, 510006, China.
| | - Pengfei Chen
- School of Environment and Energy, South China University of Technology, Higher Education Mega Center, Guangzhou, 510006, China.
| | - Guining Lu
- School of Environment and Energy, South China University of Technology, Higher Education Mega Center, Guangzhou, 510006, China.
| | - Shaobin Huang
- School of Environment and Energy, South China University of Technology, Higher Education Mega Center, Guangzhou, 510006, China.
| | - Guanglei Qiu
- School of Environment and Energy, South China University of Technology, Higher Education Mega Center, Guangzhou, 510006, China.
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23
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Mulec J, Skok S, Pašić L. Low Bacterial Diversity and Nitrate Levels in Cores from Deep Boreholes in Pristine Karst. Life (Basel) 2024; 14:677. [PMID: 38929661 PMCID: PMC11204850 DOI: 10.3390/life14060677] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 05/09/2024] [Accepted: 05/24/2024] [Indexed: 06/28/2024] Open
Abstract
This study investigates the nitrate gradients within the deep biosphere of karst carbonate rocks and their resident microbiota. Samples were taken from borehole cores at depths down to 350 m below the surface, collected during geological site investigations for proposed railway tunnels and analysed using 16S rRNA amplicon sequencing. 16S rRNA amplicon sequencing analysis revealed relatively low microbial diversity, which can serve as a reliable indicator of the pristine nature of deep karst. However, some local hotspots of diversity are independent of depth. Pseudomonadota dominated the samples, with Gammaproteobacteria dominating at the class level. The low nitrate content in deep karst, in contrast to higher values closer to the surface, serves as an additional marker of its undisturbed and unpolluted status. Based on the prediction of functional profiles from 16S rRNA sequencing data, nitrates remain low due to indigenous microbial denitrification and assimilatory nitrate reduction. Pathways related to nitrogen fixation, ammonia assimilation, and nitrification were not confirmed. When elevated nitrate levels are observed in karst, they are most probably related to anthropogenic activities. Environmental factors other than depth and nitrate content play an important role in shaping bacterial communities.
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Affiliation(s)
- Janez Mulec
- Karst Research Institute, Research Centre of the Slovenian Academy of Sciences and Arts, Titov trg 2, 6230 Postojna, Slovenia;
- UNESCO Chair on Karst Education, University of Nova Gorica, 5271 Vipava, Slovenia
| | - Sara Skok
- Karst Research Institute, Research Centre of the Slovenian Academy of Sciences and Arts, Titov trg 2, 6230 Postojna, Slovenia;
| | - Lejla Pašić
- Sarajevo Medical School, University Sarajevo School of Science and Technology, Hrasnička cesta 3a, 71000 Sarajevo, Bosnia and Herzegovina;
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24
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Ma B, Li A, Chen S, Guo H, Li N, Pan S, Chen K, Liu H, Kosolapov DB, Liu X, Zhi W, Chen Z, Mo Y, Sekar R, Huang T, Zhang H. Algicidal activity synchronized with nitrogen removal by actinomycetes: Algicidal mechanism, stress response of algal cells, denitrification performance, and indigenous bacterial community co-occurrence. JOURNAL OF HAZARDOUS MATERIALS 2024; 470:134117. [PMID: 38554519 DOI: 10.1016/j.jhazmat.2024.134117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Revised: 03/14/2024] [Accepted: 03/22/2024] [Indexed: 04/01/2024]
Abstract
The harmful algal blooms (HABs) can damage the ecological equilibrium of aquatic ecosystems and threaten human health. The bio-degradation of algal by algicidal bacteria is an environmentally friendly and economical approach to control HABs. This study applied an aerobic denitrification synchronization algicidal strain Streptomyces sp. LJH-12-1 (L1) to control HABs. The cell-free filtrate of the strain L1 showed a great algolytic effect on bloom-forming cyanobacterium, Microcystis aeruginosa (M. aeruginosa). The optimal algicidal property of strain L1 was indirect light-dependent algicidal with an algicidal rate of 85.0%. The functional metabolism, light-trapping, light-transfer efficiency, the content of pigments, and inhibition of photosynthesis of M. aeruginosa decreased after the addition of the supernatant of the strain L1 due to oxidative stress. Moreover, 96.05% nitrate removal rate synchronized with algicidal activity was achieved with the strain L1. The relative abundance of N cycling functional genes significantly increased during the strain L1 effect on M. aeruginosa. The algicidal efficiency of the strain L1 in the raw water was 76.70% with nitrate removal efficiency of 81.4%. Overall, this study provides a novel route to apply bacterial strain with the property of denitrification coupled with algicidal activity in treating micro-polluted water bodies.
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Affiliation(s)
- Ben Ma
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Anyi Li
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Shengnan Chen
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Honghong Guo
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China.
| | - Nan Li
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Sixuan Pan
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Kaige Chen
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Hanyan Liu
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Dmitry B Kosolapov
- Papanin Institute for Biology of Inland Waters of Russian Academy of Sciences (IBIW RAS) 109, Borok, Nekouz, Yaroslavl 152742, Russia
| | - Xiang Liu
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Wei Zhi
- Department of Civil and Environmental Engineering, the Pennsylvania State University, USA
| | - Zhongbing Chen
- Department of Applied Ecology, Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcká 129, Praha-Suchdol, 16500, Czech Republic
| | - Yuanyuan Mo
- Aquatic EcoHealth Group, Key Laboratory of Urban Environment and Health, Fujian Key Laboratory of Watershed Ecology, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Raju Sekar
- Department of Biological Sciences, Xi'an Jiaotong-Liverpool University, Suzhou 215123, China
| | - Tinglin Huang
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Haihan Zhang
- Collaborative Innovation Center of Water Pollution Control and Water Quality Security Assurance of Shaanxi Province, Xi'an University of Architecture and Technology, Xi'an 710055, China; Shaanxi Provincial Field Scientific Observation and Research Station of Water Quality in Qinling Mountains, Xi'an University of Architecture and Technology, Xi'an 710055, China; School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China.
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Huang M, Shen J, Guan W, Cai L, Sha H. Performance and kinetics of rotating drum biofilter aerobic simultaneous purifying SO 2 and NO x. ENVIRONMENTAL TECHNOLOGY 2024; 45:2438-2448. [PMID: 36803184 DOI: 10.1080/09593330.2023.2174049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
Abstract
The rotating drum biofilter (RDB) was investigated as a biological process for purifying SO2 and NOx. After 25 days of film hanging, the inlet concentration was less than 2800 mg·m-3, and the NOx inlet concentration was less than 800 mg·m-3, with greater than 90% desulphurisation and denitration efficiency. Bacteroidetes and Chloroflexi were the dominant bacteria in desulphurisation, while Proteobacteria were the dominant bacteria in denitrification. The sulphur and nitrogen in RDB were balanced when the SO2 inlet concentration was 1200 mg·m-3 and the NOx inlet concentration was 1000 mg·m-3. The best results were obtained SO2-S removal load was 28.12 mg·L-1·h-1 and NOx-N removal load was 9.78 mg·L-1·h-1. when SO2 concentration was 1200 mg·m-3, NOx concentration was 800 mg·m-3, and empty bed retention time (EBRT) was 75.36 s. The liquid phase dominated the SO2 purification process, and the experimental data fit better with the liquid phase mass transfer model. NOx purification was governed by the biological and liquid phases, with the modified biological-liquid phase mass transfer model fitting the experimental data better.
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Affiliation(s)
- Mengxia Huang
- Zhejiang Provincial Top Discipline of Biological Engineering (Level A), Zhejiang Wanli University, Ningbo, People's Republic of China
| | - Jiachen Shen
- Zhejiang Provincial Top Discipline of Biological Engineering (Level A), Zhejiang Wanli University, Ningbo, People's Republic of China
| | - Wenyao Guan
- Zhejiang Provincial Top Discipline of Biological Engineering (Level A), Zhejiang Wanli University, Ningbo, People's Republic of China
| | - Luxiang Cai
- College of Arts and Design, Ningbo University of Finance & Economics, Ningbo, People's Republic of China
| | - Haolei Sha
- Zhejiang Provincial Top Discipline of Biological Engineering (Level A), Zhejiang Wanli University, Ningbo, People's Republic of China
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26
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Siemering GS, Arriaga FJ, Cagle GA, Van Beek JM, Freedman ZB. Impacts of vegetable processing and cheese making effluent on soil microbial functional diversity, community structure, and denitrification potential of land treatment systems. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2024; 96:e11036. [PMID: 38740567 DOI: 10.1002/wer.11036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Revised: 04/16/2024] [Accepted: 04/20/2024] [Indexed: 05/16/2024]
Abstract
The cheese making and vegetable processing industries generate immense volumes of high-nitrogen wastewater that is often treated at rural facilities using land applications. Laboratory incubation results showed denitrification decreased with temperature in industry facility soils but remained high in soils from agricultural sites (75% at 2.1°C). 16S rRNA, phospholipid fatty acid (PLFA), and soil respiration analyses were conducted to investigate potential soil microbiome impacts. Biotic and abiotic system factor correlations showed no clear patterns explaining the divergent denitrification rates. In all three soil types at the phylum level, Actinobacteria, Proteobacteria, and Acidobacteria dominated, whereas at the class level, Nitrososphaeria and Alphaproteobacteria dominated, similar to denitrifying systems such as wetlands, wastewater resource recovery facilities, and wastewater-irrigated agricultural systems. Results show that potential denitrification drivers vary but lay the foundation to develop a better understanding of the key factors regulating denitrification in land application systems and protect local groundwater supplies. PRACTITIONER POINTS: Incubation study denitrification rates decreased as temperatures decreased, potentially leading to groundwater contamination issues during colder months. The three most dominant phyla for all systems are Actinobacteria, Proteobacteria, and Acidobacteria. The dominant class for all systems is Nitrosphaeria (phyla Crenarchaeota). No correlation patterns between denitrification rates and system biotic and abiotic factors were observed that explained system efficiency differences.
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Affiliation(s)
- Geoffrey S Siemering
- Department of Soil Science, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Francisco J Arriaga
- Department of Soil Science, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Grace A Cagle
- Department of Soil Science, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Joelie M Van Beek
- Department of Soil Science, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Zachary B Freedman
- Department of Soil Science, University of Wisconsin-Madison, Madison, Wisconsin, USA
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27
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Xu Y, Wang Y, Zheng A, Yuan Y, Xu L, Tang Y, Qin Q. Efficient biostimulation of microbial dechlorination of polychlorinated biphenyls by acetate and lactate under nitrate reducing conditions: Insights into dechlorination pathways and functional genes. JOURNAL OF HAZARDOUS MATERIALS 2024; 468:133775. [PMID: 38367444 DOI: 10.1016/j.jhazmat.2024.133775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 02/04/2024] [Accepted: 02/09/2024] [Indexed: 02/19/2024]
Abstract
Microbial-catalyzed reductive dechlorination of polychlorinated biphenyls (PCBs) is largely affected by the indigenous sediment geochemical properties. In this study, the effects of nitrate on PCB dechlorination and microbial community structures were first investigated in Taihu Lake sediment microcosms. And biostimulation study was attempted supplementing acetate/lactate. PCB dechlorination was apparently inhibited under nitrate-reducing conditions. Lower PCB dechlorination rate and less PCB dechlorination extent were observed in nitrate amended sediment microcosms (T-N) than those in non-nitrate amended microcosms (T-1) during 66 weeks of incubation. The total PCB mass reduction in T-N was 17.6% lower than that in T-1. The flanked-para dechlorination was completely inhibited, while the ortho-flanked meta dechlorination was only partially inhibited in T-N. The 7.5 mM of acetate/lactate supplementation recovered PCB dechlorination by resuming ortho-flanked meta dechlorination. Repeated additions of lactate showed more effective biostimulation than acetate. Phylum Chloroflexi, containing most known PCB dechlorinators, was found to play a vital role on stability of the network structures. In T-N, putative dechlorinating Chloroflexi, Dehalococcoides and RDase genes rdh12, pcbA4, pcbA5 all declined. With acetate/lactate supplementation, Dehalococcoides grew by 1-2 orders of magnitude and rdh12, pcbA4, pcbA5 increased by 1-3 orders of magnitude. At Week 66, parent PCBs declined by 86.4% and 80.9% respectively in T-N-LA and T-N-AC compared to 69.9% in T-N. These findings provide insights into acetate/lactate biostimulation as a cost-effective approach for treating PCB contaminated sediments undergoing nitrate inhibition.
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Affiliation(s)
- Yan Xu
- Department of Municipal Engineering, School of Civil Engineering, Southeast University, Nanjing, Jiangsu 210096, China.
| | - Ying Wang
- Department of Municipal Engineering, School of Civil Engineering, Southeast University, Nanjing, Jiangsu 210096, China
| | - An Zheng
- Department of Municipal Engineering, School of Civil Engineering, Southeast University, Nanjing, Jiangsu 210096, China
| | - Yaping Yuan
- Department of Municipal Engineering, School of Civil Engineering, Southeast University, Nanjing, Jiangsu 210096, China
| | - Lei Xu
- Department of Municipal Engineering, School of Civil Engineering, Southeast University, Nanjing, Jiangsu 210096, China
| | - Yanqiang Tang
- Department of Municipal Engineering, School of Civil Engineering, Southeast University, Nanjing, Jiangsu 210096, China
| | - Qingdong Qin
- Department of Municipal Engineering, School of Civil Engineering, Southeast University, Nanjing, Jiangsu 210096, China
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28
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Lv HZ, Chen J, Zhao Y, Li Y, Cao SH, Cai WP, Shen L, Lu Y, Li YQ. A novel derivative synchronous fluorescence method for the rapid, non-destructive and intuitive differentiation of denitrifying bacteria. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 356:120587. [PMID: 38520848 DOI: 10.1016/j.jenvman.2024.120587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 01/30/2024] [Accepted: 03/10/2024] [Indexed: 03/25/2024]
Abstract
It is challenging to differentiate bacteria residing in the same habitat by direct observation. This difficulty impedes the harvest, application and manipulation of functional bacteria in environmental engineering. In this study, we developed a novel method for rapid differentiation of living denitrifying bacteria based on derivative synchronous fluorescence spectroscopy, as exemplified by three heterotrophic nitrification-aerobic denitrification bacteria having the maximum nitrogen removal efficiencies greater than 90%. The intact bacteria and their living surroundings can be analyzed as an integrated target, which eliminates the need for the complex pre-processing of samples. Under the optimal synchronous scanning parameter (Δλ = 40 nm), each bacterium possesses a unique fluorescence spectral structure and the derivative synchronous fluorescence technique can significantly improve the spectral resolution compared to other conventional fluorescence methods, which enables the rapid differentiation of different bacteria through derivative synchronous fluorescence spectra as fast as 2 min per spectrum. Additionally, the derivative synchronous fluorescence technique can extract the spectral signals contributed by bacterial extracellular substances produced in the biological nitrogen removal process. Moreover, the results obtained from our method can reflect the real-time denitrification properties of bacteria in the biological nitrogen removal process of wastewater. All these merits highlight derivative synchronous fluorescence spectroscopy as a promising analytic method in the environmental field.
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Affiliation(s)
- Huang-Zhou Lv
- Department of Chemistry and the MOE Key Laboratory of Spectrochemical Analysis and Instrumentation, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China
| | - Jinliang Chen
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, The Key Laboratory for Synthetic Biotechnology of Xiamen City, Xiamen University, Xiamen, 361005, PR China
| | - Yan Zhao
- Department of Chemistry and the MOE Key Laboratory of Spectrochemical Analysis and Instrumentation, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China; Technology Center, China Tobacco Fujian Industrial Co., Ltd., Xiamen, 361021, PR China
| | - Yu Li
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, The Key Laboratory for Synthetic Biotechnology of Xiamen City, Xiamen University, Xiamen, 361005, PR China
| | - Shuo-Hui Cao
- Department of Chemistry and the MOE Key Laboratory of Spectrochemical Analysis and Instrumentation, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China; Department of Electronic Science, Xiamen University Xiamen, 361005, PR China
| | - Wei-Peng Cai
- Xiamen Municipal Center for Disease Control and Prevention, Xiamen, 361021, PR China
| | - Liang Shen
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, The Key Laboratory for Synthetic Biotechnology of Xiamen City, Xiamen University, Xiamen, 361005, PR China.
| | - Yinghua Lu
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, The Key Laboratory for Synthetic Biotechnology of Xiamen City, Xiamen University, Xiamen, 361005, PR China
| | - Yao-Qun Li
- Department of Chemistry and the MOE Key Laboratory of Spectrochemical Analysis and Instrumentation, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China.
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29
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Zou H, He J, Chu Y, Xu B, Li W, Huang S, Guan X, Liu F, Li H. Revealing discrepancies and drivers in the impact of lomefloxacin on groundwater denitrification throughout microbial community growth and succession. JOURNAL OF HAZARDOUS MATERIALS 2024; 465:133139. [PMID: 38056273 DOI: 10.1016/j.jhazmat.2023.133139] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Revised: 10/31/2023] [Accepted: 11/28/2023] [Indexed: 12/08/2023]
Abstract
The coexistence of antibiotics and nitrates has raised great concern about antibiotic's impact on denitrification. However, conflicting results in these studies are very puzzling, possibly due to differences in microbial succession stages. This study investigated the effects of the high-priority urgent antibiotic, lomefloxacin (LOM), on groundwater denitrification throughout microbial growth and succession. The results demonstrated that LOM's impact on denitrification varied significantly across three successional stages, with the most pronounced effects exhibited in the initial stage (53.8% promotion at 100 ng/L-LOM, 84.6% inhibition at 100 μg/L-LOM), followed by the decline stage (13.3-18.2% inhibition), while no effect in the stable stage. Hence, a distinct pattern encompassing susceptibility, insusceptibility, and sub-susceptibility in LOM's impact on denitrification was discovered. Microbial metabolism and environment variation drove the pattern, with bacterial numbers and antibiotic resistance as primary influencers (22.5% and 15.3%, p < 0.01), followed by carbon metabolism and microbial community (5.0% and 3.68%, p < 0.01). The structural equation model confirmed results reliability. Bacterial numbers and resistance influenced susceptibility by regulating compensation and bacteriostasis, while carbon metabolism and microbial community impacted energy, electron transfer, and gene composition. These findings provide valuable insights into the complex interplay between antibiotics and denitrification patterns in groundwater.
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Affiliation(s)
- Hua Zou
- Key Laboratory of Groundwater Conservation of MWR, China University of Geosciences, Beijing 100083, China; MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences, Beijing 100083, China
| | - Jiangtao He
- Key Laboratory of Groundwater Conservation of MWR, China University of Geosciences, Beijing 100083, China; MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences, Beijing 100083, China.
| | - Yanjia Chu
- Key Laboratory of Groundwater Conservation of MWR, China University of Geosciences, Beijing 100083, China; MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences, Beijing 100083, China
| | - Baoshi Xu
- Key Laboratory of Groundwater Conservation of MWR, China University of Geosciences, Beijing 100083, China; MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences, Beijing 100083, China
| | - Wei Li
- Key Laboratory of Groundwater Conservation of MWR, China University of Geosciences, Beijing 100083, China; MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences, Beijing 100083, China
| | - Shiwen Huang
- Key Laboratory of Groundwater Conservation of MWR, China University of Geosciences, Beijing 100083, China; MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences, Beijing 100083, China
| | - Xiangyu Guan
- Key Laboratory of Groundwater Conservation of MWR, China University of Geosciences, Beijing 100083, China; School of Ocean Sciences, China University of Geosciences (Beijing), Beijing 100083, China
| | - Fei Liu
- Key Laboratory of Groundwater Conservation of MWR, China University of Geosciences, Beijing 100083, China; MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences, Beijing 100083, China
| | - Haiyan Li
- School of Environment and Energy Engineering, Beijing University of Civil Engineering and Architecture, Beijing 100044, China
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30
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Chen X, Sheng Y, Wang G, Zhou P, Liao F, Mao H, Zhang H, Qiao Z, Wei Y. Spatiotemporal successions of N, S, C, Fe, and As cycling genes in groundwater of a wetland ecosystem: Enhanced heterogeneity in wet season. WATER RESEARCH 2024; 251:121105. [PMID: 38184913 DOI: 10.1016/j.watres.2024.121105] [Citation(s) in RCA: 23] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2023] [Revised: 12/29/2023] [Accepted: 01/02/2024] [Indexed: 01/09/2024]
Abstract
Microorganisms in wetland groundwater play an essential role in driving global biogeochemical cycles. However, largely due to the dynamics of spatiotemporal surface water-groundwater interaction, the spatiotemporal successions of biogeochemical cycling in wetland groundwater remain poorly delineated. Herein, we investigated the seasonal coevolution of hydrogeochemical variables and microbial functional genes involved in nitrogen, carbon, sulfur, iron, and arsenic cycling in groundwater within a typical wetland, located in Poyang Lake Plain, China. During the dry season, the microbial potentials for dissimilatory nitrate reduction to ammonium and ammonification were dominant, whereas the higher potentials for nitrogen fixation, denitrification, methane metabolism, and carbon fixation were identified in the wet season. A likely biogeochemical hotspot was identified in the area located in the low permeable aquifer near the lake, characterized by reducing conditions and elevated levels of Fe2+ (6.65-17.1 mg/L), NH4+ (0.57-3.98 mg/L), total organic carbon (1.02-1.99 mg/L), and functional genes. In contrast to dry season, higher dissimilarities of functional gene distribution were observed in the wet season. Multivariable statistics further indicated that the connection between the functional gene compositions and hydrogeochemical variables becomes less pronounced as the seasons transition from dry to wet. Despite this transition, Fe2+ remained the dominant driving force on gene distribution during both seasons. Gene-based co-occurrence network displayed reduced interconnectivity among coupled C-N-Fe-S cycles from the dry to the wet season, underpinning a less complex and more destabilizing occurrence pattern. The rising groundwater level may have contributed to a reduction in the stability of functional microbial communities, consequently impacting ecological functions. Our findings shed light on microbial-driven seasonal biogeochemical cycling in wetland groundwater.
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Affiliation(s)
- Xianglong Chen
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, PR China
| | - Yizhi Sheng
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing 100083, PR China; Frontiers Science Center for Deep-time Digital Earth, China University of Geosciences, Beijing 100083, PR China.
| | - Guangcai Wang
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, PR China.
| | - Pengpeng Zhou
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, PR China
| | - Fu Liao
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, PR China
| | - Hairu Mao
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, PR China
| | - Hongyu Zhang
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, PR China
| | - Zhiyuan Qiao
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, PR China
| | - Yuquan Wei
- College of Resources and Environmental Science, China Agricultural University, Beijing 100094, PR China
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31
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He Y, Yun H, Peng L, Ji J, Wang W, Li X. Deciphering the potential role of quorum quenching in efficient aerobic denitrification driven by a synthetic microbial community. WATER RESEARCH 2024; 251:121162. [PMID: 38277828 DOI: 10.1016/j.watres.2024.121162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 01/03/2024] [Accepted: 01/16/2024] [Indexed: 01/28/2024]
Abstract
Low efficiency is one of the main challenges for the application of aerobic denitrification technology in wastewater treatment. To improve denitrification efficiency, a synthetic microbial community (SMC) composed of denitrifiers Acinetobacter baumannii N1 (AC), Pseudomonas aeruginosa N2 (PA) and Aeromonas hydrophila (AH) were constructed. The nitrate (NO3--N) reduction efficiency of the SMC reached 97 % with little nitrite (NO2--N) accumulation, compared to the single-culture systems and co-culture systems. In the SMC, AH proved to mainly contribute to NO3--N reduction with the assistance of AC, while PA exerted NO2--N reduction. AC and AH secreted N-hexanoyl-DL-homoserine lactone (C6-HSL) to promote the electron transfer from the quinone pool to nitrate reductase. The declined N-(3-oxododecanoyl)-L-homoserine lactone (3OC12-HSL), resulting from quorum quenching (QQ) by AH, stimulated the excretion of pyocyanin, which could improve the electron transfer from complex III to downstream denitrifying enzymes for NO2--N reduction. In addition, C6-HSL mainly secreted by PA led to the up-regulation of TCA cycle-related genes and provided sufficient energy (such as NADH and ATP) for aerobic denitrification. In conclusion, members of the SMC achieved efficient denitrification through the interactions between QQ, electron transfer, and energy metabolism induced by N-acyl-homoserine lactones (AHLs). This study provided a theoretical basis for the engineering application of synthetic microbiome to remove nitrate wastewater.
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Affiliation(s)
- Yue He
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou 730000, China
| | - Hui Yun
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou 730000, China; Gansu Key Laboratory of Biomonitoring and Bioremediation for Environment Pollution, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou 730000, China.
| | - Liang Peng
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou 730000, China
| | - Jing Ji
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou 730000, China
| | - Wenxue Wang
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou 730000, China
| | - Xiangkai Li
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou 730000, China; Gansu Key Laboratory of Biomonitoring and Bioremediation for Environment Pollution, School of Life Sciences, Lanzhou University, Tianshui South Road #222, Lanzhou 730000, China.
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32
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Patel RJ, Nerurkar AS. Thauera sp. for efficient nitrate removal in continuous denitrifying moving bed biofilm reactor. Bioprocess Biosyst Eng 2024; 47:429-442. [PMID: 38441647 DOI: 10.1007/s00449-024-02977-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Accepted: 01/22/2024] [Indexed: 03/16/2024]
Abstract
Thauera is the most widely found dominant denitrifying genus in wastewater. In earlier study, MBBR augmented with a specially developed denitrifying five-membered bacterial consortium (DC5) where Thauera was found to be the most abundant and persistent genus. Therefore, to check the functional potential of Thauera in the removal of nitrate-containing wastewater in the present study Thauera sp.V14 one of the member of the consortium DC5 was used as the model organism. Thauera sp.V14 exhibited strong hydrophobicity, auto-aggregation ability, biofilm formation and denitrification ability, which indicated its robust adaptability short colonization and nitrate removal efficiency. Continuous reactor studies with Thauera sp.V14 in 10 L dMBBR showed 91% of denitrification efficiency with an initial nitrate concentration of 620 mg L-1 within 3 h of HRT. Thus, it revealed that Thauera can be employed as an effective microorganism for nitrate removal from wastewater based on its performance in the present studies.
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Affiliation(s)
- Roshni J Patel
- Department of Microbiology and Biotechnology Centre, Faculty of Science, The Maharaja Sayajirao University of Baroda, Vadodara, Gujarat, 390002, India
| | - Anuradha S Nerurkar
- Department of Microbiology and Biotechnology Centre, Faculty of Science, The Maharaja Sayajirao University of Baroda, Vadodara, Gujarat, 390002, India.
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Yang S, Hou LJ, Dong HP, Zhang JW, Gao DZ, Li XF, Zheng YL, Liang X, Liu M. Natural chalcopyrite mitigates nitrous oxide emissions in sediment from coastal wetlands. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:168766. [PMID: 38008310 DOI: 10.1016/j.scitotenv.2023.168766] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 10/29/2023] [Accepted: 11/19/2023] [Indexed: 11/28/2023]
Abstract
Coastal wetlands are one of the most important natural sources of nitrous oxide (N2O). Previous studies have shown that copper-containing chemicals are able to reduce N2O emissions from these ecosystems. However, these chemicals may harm organisms present in coastal waters and sediment, and disturb the ecological balance of these areas. Here, we first investigated the physiological characteristics and genetic potential of denitrifying bacteria isolated from coastal wetlands. Based on an isolated denitrifier carrying a complete denitrification pathway, we tested the effect of the natural mineral chalcopyrite on N2O production by the bacteria. The results demonstrated that chalcopyrite addition lowers N2O emissions from the bacteria while increasing its N2 production rate. Among the four denitrification genes of the isolate, only nosZ gene expression was significantly upregulated following the addition of 2 mg L-1 chalcopyrite. Furthermore, chalcopyrite was applied to coastal wetland sediments. The N2O flux was significantly reduced in 50-100 mg L-1 chalcopyrite-amended sets relative to the controls. Notably, the dissolved Cu concentration in chalcopyrite-amended sediment remained within the limit set by the National Sewage Treatment Discharge Standard. qPCR and metagenomic analysis revealed that the abundance of N2O-reducing bacteria with the nosZ or nirK + nosZ genotype increased significantly in the chalcopyrite-amended groups relative to the controls, suggesting their active involvement in the reduction of N2O emissions. Our findings offer valuable insights for the use of natural chalcopyrite in large-scale field applications to reduce N2O emissions.
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Affiliation(s)
- Sai Yang
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Li-Jun Hou
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China.
| | - Hong-Po Dong
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China.
| | - Jia-Wei Zhang
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Deng-Zhou Gao
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Xiao-Fei Li
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Yan-Ling Zheng
- Key Laboratory of Geographic Information Science, Ministry of Education, East China Normal University, Shanghai 200241, China
| | - Xia Liang
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Min Liu
- Key Laboratory of Geographic Information Science, Ministry of Education, East China Normal University, Shanghai 200241, China
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34
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Fu L, Liu Y, Wang M, Lian C, Cao L, Wang W, Sun Y, Wang N, Li C. The diversification and potential function of microbiome in sediment-water interface of methane seeps in South China Sea. Front Microbiol 2024; 15:1287147. [PMID: 38380093 PMCID: PMC10878133 DOI: 10.3389/fmicb.2024.1287147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Accepted: 01/11/2024] [Indexed: 02/22/2024] Open
Abstract
The sediment-water interfaces of cold seeps play important roles in nutrient transportation between seafloor and deep-water column. Microorganisms are the key actors of biogeochemical processes in this interface. However, the knowledge of the microbiome in this interface are limited. Here we studied the microbial diversity and potential metabolic functions by 16S rRNA gene amplicon sequencing at sediment-water interface of two active cold seeps in the northern slope of South China Sea, Lingshui and Site F cold seeps. The microbial diversity and potential functions in the two cold seeps are obviously different. The microbial diversity of Lingshui interface areas, is found to be relatively low. Microbes associated with methane consumption are enriched, possibly due to the large and continuous eruptions of methane fluids. Methane consumption is mainly mediated by aerobic oxidation and denitrifying anaerobic methane oxidation (DAMO). The microbial diversity in Site F is higher than Lingshui. Fluids from seepage of Site F are mitigated by methanotrophic bacteria at the cyclical oxic-hypoxic fluctuating interface where intense redox cycling of carbon, sulfur, and nitrogen compounds occurs. The primary modes of microbial methane consumption are aerobic methane oxidation, along with DAMO, sulfate-dependent anaerobic methane oxidation (SAMO). To sum up, anaerobic oxidation of methane (AOM) may be underestimated in cold seep interface microenvironments. Our findings highlight the significance of AOM and interdependence between microorganisms and their environments in the interface microenvironments, providing insights into the biogeochemical processes that govern these unique ecological systems.
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Affiliation(s)
- Lulu Fu
- Center of Deep Sea Research and Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laoshan Laboratory, Qingdao, China
| | - Yanjun Liu
- Center of Deep Sea Research and Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
| | - Minxiao Wang
- Center of Deep Sea Research and Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laoshan Laboratory, Qingdao, China
| | - Chao Lian
- Center of Deep Sea Research and Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
| | - Lei Cao
- Center of Deep Sea Research and Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
| | - Weicheng Wang
- State Key Laboratory of Mariculture Breeding, Key Laboratory of Marine Biotechnology of Fujian Province, Institute of Oceanology, College of Marine Sciences, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Yan Sun
- Center of Deep Sea Research and Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laoshan Laboratory, Qingdao, China
| | - Nan Wang
- Center of Deep Sea Research and Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laoshan Laboratory, Qingdao, China
| | - Chaolun Li
- Center of Deep Sea Research and Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laoshan Laboratory, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
- South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
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35
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Yang J, Xie X, Miao Y, Dong Z, Zhu B. Isolation and characterization of a cold-tolerant heterotrophic nitrification-aerobic denitrification bacterium and evaluation of its nitrogen-removal efficiency. ENVIRONMENTAL RESEARCH 2024; 242:117674. [PMID: 38029814 DOI: 10.1016/j.envres.2023.117674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 11/12/2023] [Accepted: 11/13/2023] [Indexed: 12/01/2023]
Abstract
With a view toward addressing the poor efficiency with which nitrogen is removed from wastewater below 10 °C, in this study, we isolated a novel cold-tolerant heterotrophic nitrification-aerobic denitrification (HN-AD) bacterium from a wetland and characterized its nitrogen removal performance and nitrogen metabolic pathway. On the basis of 16S rRNA gene sequencing, this strain was identified as a species of Janthinobacterium, designated J1-1. At 8 °C, strain J1-1 showed excellent removal efficiencies of 89.18% and 68.18% for single-source NH4+-N and NO3--N, respectively, and removal efficiencies of 96.23% and 79.64% for NH4+-N and NO3--N, respectively, when supplied with mixed-source nitrogen. Whole-genome sequence analysis and successful amplification of the amoA, napA, and nirK functional genes related to nitrogen metabolism provided further evidence in support of the HN-AD capacity of strain J1-1. The deduced HN-AD metabolic pathway of the strain was NH4+-N→NH2OH→NO2--N→NO3--N→NO2--N→NO→N2O. In addition, assessments of NH4+-N removal under different conditions revealed the following conditions to be optimal for efficient removal: a temperature of 20 °C, pH of 7, shaking speed of 150 rpm, sodium succinate as a carbon source, and a C/N mass ratio of 16. Given its efficient nitrogen removal capacity at 8 °C, the J1-1 strain characterized in this study has considerable application potential in the treatment of low-temperature wastewater.
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Affiliation(s)
- Jingyu Yang
- Sichuan Academy of Forestry Sciences, Chengdu, 610081, China
| | - Xiuhong Xie
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, Sichuan, 610041, China; Key Laboratory of Mountain Surface Processes and Ecological Regulation, Chinese Academy of Sciences, Chengdu, Sichuan, 610041, China
| | - Yuanying Miao
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, Sichuan, 610041, China
| | - Zhixin Dong
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, Sichuan, 610041, China; Key Laboratory of Mountain Surface Processes and Ecological Regulation, Chinese Academy of Sciences, Chengdu, Sichuan, 610041, China.
| | - Bo Zhu
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, Sichuan, 610041, China; Key Laboratory of Mountain Surface Processes and Ecological Regulation, Chinese Academy of Sciences, Chengdu, Sichuan, 610041, China
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36
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Park SM, Rhee MS. Prevalence and phylogenetic traits of nitrite-producing bacteria in raw ingredients and processed baby foods: Potential sources of foodborne infant methemoglobinemia. Food Res Int 2024; 178:113966. [PMID: 38309914 DOI: 10.1016/j.foodres.2024.113966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Revised: 12/19/2023] [Accepted: 01/02/2024] [Indexed: 02/05/2024]
Abstract
Nitrite, which has been mainly regarded as a chemical hazard, can induce infant methemoglobinemia. As for nitrite as a product of microbial metabolism, the contribution of the oral or gut microbiome has mostly received attention, whereas the role of nitrite-producing bacteria (NPBs) in food has been less elucidated. In this study, mesophilic NPBs were isolated from food samples (n = 320) composed of raw ingredients for weaning foods (n = 160; beetroot, broccoli, carrot, lettuce, rice powder, spinach, sweet potato, and honey) and processed baby foods (n = 160; cereal snack, cheese, yogurt, powdered infant formula, sorghum syrup, vegetable fruit juice, and weaning food). The phylogenetic diversity of the NPB strains was analyzed via 16S rRNA sequencing. All 15 food items harbored NPBs, with a prevalence of 71.9 % and 34.4 % for the raw ingredients and processed foods, respectively. The NPBs isolated from the foods were identified as Actinomycetota (Actinomycetes), Bacteroidota (Flavobacteriia, Sphingobacteriia), Bacillota (Bacilli), or Pseudomonadota (Alpha-, Beta-, and Gammaproteobacteria). Among the raw and processed foods, beetroot (85.0 %) and powdered infant formula (70.0 %) showed had the highest NPB prevalence (P > 0.05). Bacillota predominated in both types of food. The contamination source of Pseudomonadota, which was another major phylum present in the raw ingredients, was presumed to be the soil and endophytes in the seeds, whereas that of Bacillota was the manufacturing equipment used with the raw ingredients. Common species for probiotics, such as Lacticaseibacillus, Leuconostoc, Enterococcus, and Bacillus, were isolated and identified as NPBs. To our knowledge, this is the first study to reveal the taxonomical diversity and omnipresence of NPBs in food for babies. The results of this study highlight the importance of food-mediated microbiological risks of infant methemoglobinemia which are yet underrecognized.
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Affiliation(s)
- Sun Min Park
- Department of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Min Suk Rhee
- Department of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Republic of Korea.
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Takahashi K, Oshiki M, Ruan C, Morinaga K, Toyofuku M, Nomura N, Johnson DR. Denitrification in low oxic environments increases the accumulation of nitrogen oxide intermediates and modulates the evolutionary potential of microbial populations. ENVIRONMENTAL MICROBIOLOGY REPORTS 2024; 16:e13221. [PMID: 38037543 PMCID: PMC10866065 DOI: 10.1111/1758-2229.13221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Accepted: 11/15/2023] [Indexed: 12/02/2023]
Abstract
Denitrification in oxic environments occurs when a microorganism uses nitrogen oxides as terminal electron acceptors even though oxygen is available. While this phenomenon is well-established, its consequences on ecological and evolutionary processes remain poorly understood. We hypothesize here that denitrification in oxic environments can modify the accumulation profiles of nitrogen oxide intermediates with cascading effects on the evolutionary potentials of denitrifying microorganisms. To test this, we performed laboratory experiments with Paracoccus denitrificans and complemented them with individual-based computational modelling. We found that denitrification in low oxic environments significantly increases the accumulation of nitrite and nitric oxide. We further found that the increased accumulation of these intermediates has a negative effect on growth at low pH. Finally, we found that the increased negative effect at low pH increases the number of individuals that contribute to surface-associated growth. This increases the amount of genetic diversity that is preserved from the initial population, thus increasing the number of genetic targets for natural selection to act upon and resulting in higher evolutionary potentials. Together, our data highlight that denitrification in low oxic environments can affect the ecological processes and evolutionary potentials of denitrifying microorganisms by modifying the accumulation of nitrogen oxide intermediates.
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Affiliation(s)
- Kohei Takahashi
- Graduate School of Sciences and TechnologiesUniversity of TsukubaTsukubaIbarakiJapan
- Department of Environmental MicrobiologySwiss Federal Institute of Aquatic Science and Technology (Eawag)DübendorfSwitzerland
| | - Mamoru Oshiki
- Division of Environmental Engineering, Faculty of EngineeringHokkaido UniversitySapporoHokkaidoJapan
| | - Chujin Ruan
- Department of Environmental MicrobiologySwiss Federal Institute of Aquatic Science and Technology (Eawag)DübendorfSwitzerland
| | - Kana Morinaga
- Graduate School of Sciences and TechnologiesUniversity of TsukubaTsukubaIbarakiJapan
| | - Masanori Toyofuku
- Faculty of Life and Environmental SciencesUniversity of TsukubaTsukubaIbarakiJapan
- Microbiology Research Center for SustainabilityUniversity of TsukubaTsukubaIbarakiJapan
| | - Nobuhiko Nomura
- Faculty of Life and Environmental SciencesUniversity of TsukubaTsukubaIbarakiJapan
- Microbiology Research Center for SustainabilityUniversity of TsukubaTsukubaIbarakiJapan
| | - David R. Johnson
- Department of Environmental MicrobiologySwiss Federal Institute of Aquatic Science and Technology (Eawag)DübendorfSwitzerland
- Institute of Ecology and EvolutionUniversity of BernBernSwitzerland
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38
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Zhang Y, Xu J, Dong X, Wang J, Liu C, Liu J. Optimization of nitrogen removal conditions based on response surface methodology and nitrogen removal pathway of Paracoccus sp. QD-19. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 908:168348. [PMID: 37935269 DOI: 10.1016/j.scitotenv.2023.168348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 11/01/2023] [Accepted: 11/03/2023] [Indexed: 11/09/2023]
Abstract
The strain Paracoccus sp. QD-19 was isolated from the sludge-water mixture of aerobic tanks at the southern wastewater treatment plant in Shenyang, China. The optimal nitrogen removal conditions for strain QD-19 were determined using the Plackett-Burman design, path of steepest ascent method, and response surface methodology (RSM). The optimum nitrogen removal conditions were C/N 12.93, temperature 37 °C, and shaking speed 175.50 r/min. Strain QD-19 achieved 83.82 ± 0.80 % nitrogen removal efficiency at 10 h under optimum conditions. Functional enzyme-encodinge genes amplified via 16S rRNA sequence analysis included amoA, hao, napA, nirS, nirK, norB, and nosZ. The results revealed that NH4+-N → NH2OH → NO2--N → NO3--N → NO2--N → NO → N2O → N2 was the pathway for heterotrophic nitrification - aerobic denitrification. The strain was used to treat wastewater from a sewage treatment plant under optimal response surface methodology conditions. As a result, the TN removal efficiency was 77.11 %. The findings demonstrated that strain QD-19 exhibits favorable potential for heterotrophic nitrification and aerobic denitrification (HN-AD) of actual wastewater, presenting a promising application for biological wastewater treatment.
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Affiliation(s)
- Yuhong Zhang
- College of Environmental and Safety Engineering, Shenyang University of Chemical Technology, Shenyang 110142, China.
| | - Jiaqi Xu
- College of Environmental and Safety Engineering, Shenyang University of Chemical Technology, Shenyang 110142, China
| | - Xianbo Dong
- College of Environmental and Safety Engineering, Shenyang University of Chemical Technology, Shenyang 110142, China
| | - Jiabao Wang
- College of Environmental and Safety Engineering, Shenyang University of Chemical Technology, Shenyang 110142, China
| | - Changfeng Liu
- College of Environmental and Safety Engineering, Shenyang University of Chemical Technology, Shenyang 110142, China
| | - Jiaju Liu
- College of Environmental and Safety Engineering, Shenyang University of Chemical Technology, Shenyang 110142, China
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39
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Ma B, Yang W, Li N, Kosolapov DB, Liu X, Pan S, Liu H, Li A, Chu M, Hou L, Zhang Y, Li X, Chen Z, Chen S, Huang T, Cao S, Zhang H. Aerobic Denitrification Promoting by Actinomycetes Coculture: Investigating Performance, Carbon Source Metabolic Characteristic, and Raw Water Restoration. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:683-694. [PMID: 38102081 DOI: 10.1021/acs.est.3c05062] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2023]
Abstract
The coculture theory that promotes denitrification relies on effectively utilizing the resources of low-efficiency denitrification microbes. Here, the strains Streptomyces sp. PYX97 and Streptomyces sp. TSJ96 were isolated and showed lower denitrification capacity when cultured individually. However, the coculture of strains PYX97 and TSJ96 enhanced nitrogen removal (removed 96.40% of total nitrogen) and organic carbon reduction (removed 92.13% of dissolved organic carbon) under aerobic conditions. Nitrogen balance analysis indicated that coculturing enhanced the efficiency of nitrate converted into gaseous nitrogen reaching 70.42%. Meanwhile, the coculturing promoted the cell metabolism capacity and carbon source metabolic activity. The coculture strains PYX97 and TSJ96 thrived in conditions of C/N = 10, alkalescence, and 150 rpm shaking speed. The coculturing reduced total nitrogen and CODMn in the raw water treatment by 83.32 and 84.21%, respectively. During this treatment, the cell metabolic activity and cell density increased in the coculture strains PYX97 and TSJ96 reactor. Moreover, the coculture strains could utilize aromatic protein and soluble microbial products during aerobic denitrification processes in raw water treatment. This study suggests that coculturing inefficient actinomycete strains could be a promising approach for treating polluted water bodies.
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Affiliation(s)
- Ben Ma
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Wanqiu Yang
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
- Huaqing College, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Nan Li
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Dmitry B Kosolapov
- Papanin Institute for Biology of Inland Waters of Russian Academy of Sciences (IBIW RAS), 109 Borok, Nekouz, Yaroslavl 152742, Russia
| | - Xiang Liu
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Sixuan Pan
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Huan Liu
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Anyi Li
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Mengting Chu
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Liyuan Hou
- Civil and Environmental Engineering Department, Utah State University, Logan, Utah 84322, United States
| | - Yinbin Zhang
- Department of Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710004, China
| | - Xuan Li
- College of Environmental Science & Engineering, Yancheng Institute of Technology, Yancheng 224051, China
| | - Zhongbing Chen
- Department of Applied Ecology, Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcká 129, 16500Praha-Suchdol ,Czech Republic
| | - Shengnan Chen
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Tinglin Huang
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Shumiao Cao
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Haihan Zhang
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
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40
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Prabhu A, Tule S, Chuvochina M, Bodén M, McIlroy SJ, Zaugg J, Rinke C. Machine learning and metagenomics identifies uncharacterized taxa inferred to drive biogeochemical cycles in a subtropical hypereutrophic estuary. ISME COMMUNICATIONS 2024; 4:ycae067. [PMID: 39866676 PMCID: PMC11758582 DOI: 10.1093/ismeco/ycae067] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 02/19/2024] [Accepted: 05/08/2024] [Indexed: 01/28/2025]
Abstract
Anthropogenic influences have drastically increased nutrient concentrations in many estuaries globally, and microbial communities have adapted to the resulting hypereutrophic ecosystems. However, our knowledge of the dominant microbial taxa and their potential functions in these ecosystems has remained sparse. Here, we study prokaryotic community dynamics in a temporal-spatial dataset, from a subtropical hypereutrophic estuary. Screening 54 water samples across brackish to marine sites revealed that nutrient concentrations and salinity best explained spatial community variations, whereas temperature and dissolved oxygen likely drive seasonal shifts. By combining short and long read sequencing data, we recovered 2,459 metagenome-assembled genomes, proposed new taxon names for previously uncharacterised lineages, and created an extensive, habitat specific genome reference database. Community profiling based on this genome reference database revealed a diverse prokaryotic community comprising 61 bacterial and 18 archaeal phyla, and resulted in an improved taxonomic resolution at lower ranks down to genus level. We found that the vast majority (61 out of 73) of abundant genera (>1% average) represented unnamed and novel lineages, and that all genera could be clearly separated into brackish and marine ecotypes with inferred habitat specific functions. Applying supervised machine learning and metabolic reconstruction, we identified several microbial indicator taxa responding directly or indirectly to elevated nitrate and total phosphorus concentrations. In conclusion, our analysis highlights the importance of improved taxonomic resolution, sheds light on the role of previously uncharacterised lineages in estuarine nutrient cycling, and identifies microbial indicators for nutrient levels crucial in estuary health assessments.
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Affiliation(s)
- Apoorva Prabhu
- School of Chemistry and Molecular Biosciences, Australian
Centre for Ecogenomics, The University of Queensland, QLD
4072, Australia
| | - Sanjana Tule
- School of Chemistry and Molecular Biosciences, The University of
Queensland, QLD 4072, Australia
| | - Maria Chuvochina
- School of Chemistry and Molecular Biosciences, Australian
Centre for Ecogenomics, The University of Queensland, QLD
4072, Australia
| | - Mikael Bodén
- School of Chemistry and Molecular Biosciences, The University of
Queensland, QLD 4072, Australia
| | - Simon J McIlroy
- Centre for Microbiome Research, School of Biomedical
Sciences, Translational Research Institute, Queensland University of
Technology, QLD 4102, Australia
| | - Julian Zaugg
- School of Chemistry and Molecular Biosciences, Australian
Centre for Ecogenomics, The University of Queensland, QLD
4072, Australia
| | - Christian Rinke
- School of Chemistry and Molecular Biosciences, Australian
Centre for Ecogenomics, The University of Queensland, QLD
4072, Australia
- Department of Microbiology, University of Innsbruck, 6020
Innsbruck, Austria
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41
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Miao X, Xu J, Yang B, Luo J, Zhi Y, Li W, He Q, Li H. Indigenous mixotrophic aerobic denitrifiers stimulated by oxygen micro/nanobubble-loaded microporous biochar. BIORESOURCE TECHNOLOGY 2024; 391:129997. [PMID: 37952594 DOI: 10.1016/j.biortech.2023.129997] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2023] [Revised: 11/07/2023] [Accepted: 11/07/2023] [Indexed: 11/14/2023]
Abstract
The prevalence of hypoxia in surface sediment inhibits the growth of aerobic denitrifiers in natural waters. A novel oxygen micro/nanobubble-loaded microporous biochar (OMB) was developed to activate indigenous aerobic denitrifiers in this study. The results indicate a thin-layer OMB capping mitigates hypoxia effectively. Following a 30-day microcosm-based incubation, a 60 % decrease in total nitrogen concentration was observed, and the oxygen penetration depth in the sediment was increased from <4.0 mm to 38.4 mm. High-throughput sequencing revealed the stimulation of indigenous mixotrophic aerobic denitrifiers, including autotrophic denitrifiers such as Hydrogenophaga and Thiobacillus, heterotrophic denitrifiers like Limnobacter and unclassified_f_Methylophilaceae, and heterotrophic nitrification aerobic denitrification bacteria, including Shinella and Acidovorax, with total relative abundance reaching up to 38.1 %. Further analysis showed OMB enhanced the overall collaborative relationships among microorganisms and promoted the expression of nitrification- and denitrification-related genes. This study introduces an innovative strategy for stimulating indigenous aerobic denitrifiers in aquatic ecosystems.
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Affiliation(s)
- Xiaojun Miao
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing 400044, China; Laboratory of Environmental Sciences and Technology, Xinjiang Technical Institute of Physics & Chemistry, Chinese Academy of Sciences, Urumqi 830011, China
| | - Jiani Xu
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing 400044, China
| | - Bing Yang
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing 400044, China
| | - Junxiao Luo
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing 400044, China
| | - Yue Zhi
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing 400044, China
| | - Wei Li
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing 400044, China
| | - Qiang He
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing 400044, China
| | - Hong Li
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing 400044, China.
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42
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Wei C, Su F, Yue H, Song F, Li H. Spatial distribution characteristics of denitrification functional genes and the environmental drivers in Liaohe estuary wetland. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:1064-1078. [PMID: 38030842 DOI: 10.1007/s11356-023-30938-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Accepted: 11/03/2023] [Indexed: 12/01/2023]
Abstract
Genes nirS, nirK, and nosZ are specific for the denitrification process, which is associated with greenhouse gas N2O emission. The abundances and diversities of community containing these three genes are usually used as a common index to reflect the denitrification process, and they would be affected by differences in environmental factors caused by changes from warm to cold conditions. The quantification of denitrification in natural wetlands is complex, and straightforward identification of spatial distribution and drivers affecting the process is still developing. In this study, the bacterial communities, gene diversities, and relative abundances involved in denitrification were investigated in Liaohe Estuary Wetland. We analyzed the relative abundances, diversities, and communities of bacteria containing the three genes at warm and cold conditions using Illumina MiSeq sequencing and detected the potential environmental factors influencing their distribution by using a random forest algorithm. There are great differences in the community composition of the bacteria containing genes nirS, nirK, and nosZ. All the abundant taxa of nirS and nirK communities belonged to phylum Proteobacteria. Compared with the community composition of bacteria containing nirS and nirK, the community of bacteria containing nosZ is more diverse, and the subdivision taxa of phylum Euryarchaeota was also abundant in the community containing nosZ. The distribution characteristics of the relative abundance of nirS and nirK showed obvious differences both at warm and cold climate conditions. The oxidation-reduction potential, nitrite nitrogen, and salinity were detected as potential variables that might explain the diversity of nirS. The total nitrogen and nitrite nitrogen were the important variables for predicting the relative abundance of nirS at warm climate condition, while oxidation-reduction potential and pH contributed to the diversity of nirS at cold condition. The bulk density of sediment was detected as a potential variable affecting the relative abundance of nirK at warm and cold conditions, and diversity of nirK at warm condition, while nitrite nitrogen was detected as an important environmental factor for predicting the diversity of nirK at cold condition. Overall, our results show that the key environmental factors, which affect the relative abundance, diversity, and community of bacteria containing the functional denitrification genes, are not exactly the same, and the diversities of nirS, nirK, and nosZ have a higher environmental sensitivity than their relative abundances.
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Affiliation(s)
- Chao Wei
- College of Water Conservancy, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China
- Liaoning Panjin Wetland Ecosystem National Observation and Research Station, Shenyang, 110866, Liaoning, China
- Liaoning Shuangtai Estuary Wetland Ecosystem Research Station, Panjin, 124112, Liaoning, China
- Liaoning Provincial Key Laboratory of Soil Erosion and Ecological Restoration, Shenyang, 110866, Liaoning, China
| | - Fangli Su
- College of Water Conservancy, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China.
- Liaoning Panjin Wetland Ecosystem National Observation and Research Station, Shenyang, 110866, Liaoning, China.
- Liaoning Shuangtai Estuary Wetland Ecosystem Research Station, Panjin, 124112, Liaoning, China.
- Liaoning Provincial Key Laboratory of Soil Erosion and Ecological Restoration, Shenyang, 110866, Liaoning, China.
| | - Hangyu Yue
- College of Water Conservancy, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China
| | - Fei Song
- College of Water Conservancy, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China
- Liaoning Panjin Wetland Ecosystem National Observation and Research Station, Shenyang, 110866, Liaoning, China
- Liaoning Shuangtai Estuary Wetland Ecosystem Research Station, Panjin, 124112, Liaoning, China
- Liaoning Provincial Key Laboratory of Soil Erosion and Ecological Restoration, Shenyang, 110866, Liaoning, China
| | - Haifu Li
- College of Water Conservancy, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China
- Liaoning Panjin Wetland Ecosystem National Observation and Research Station, Shenyang, 110866, Liaoning, China
- Liaoning Shuangtai Estuary Wetland Ecosystem Research Station, Panjin, 124112, Liaoning, China
- Liaoning Provincial Key Laboratory of Soil Erosion and Ecological Restoration, Shenyang, 110866, Liaoning, China
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Baumann KBL, Mazzoli A, Salazar G, Ruscheweyh HJ, Müller B, Niederdorfer R, Sunagawa S, Lever MA, Lehmann MF, Bürgmann H. Metagenomic and -transcriptomic analyses of microbial nitrogen transformation potential, and gene expression in Swiss lake sediments. ISME COMMUNICATIONS 2024; 4:ycae110. [PMID: 39411197 PMCID: PMC11476906 DOI: 10.1093/ismeco/ycae110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Revised: 08/23/2024] [Indexed: 10/19/2024]
Abstract
The global nitrogen (N) cycle has been strongly altered by anthropogenic activities, including increased input of bioavailable N into aquatic ecosystems. Freshwater sediments are hotspots with regards to the turnover and elimination of fixed N, yet the environmental controls on the microbial pathways involved in benthic N removal are not fully understood. Here, we analyze the abundance and expression of microbial genes involved in N transformations using metagenomics and -transcriptomics across sediments of 12 Swiss lakes that differ in sedimentation rates and trophic regimes. Our results indicate that microbial N loss in these sediments is primarily driven by nitrification coupled to denitrification. N-transformation gene compositions indicated three groups of lakes: agriculture-influenced lakes characterized by rapid depletion of oxidants in the sediment porewater, pristine-alpine lakes with relatively deep sedimentary penetration of oxygen and nitrate, and large, deep lakes with intermediate porewater hydrochemical properties. Sedimentary organic matter (OM) characteristics showed the strongest correlations with the community structure of microbial N-cycling communities. Most transformation pathways were expressed, but expression deviated from gene abundance and did not correlate with benthic geochemistry. Cryptic N-cycling may maintain transcriptional activity even when substrate levels are below detection. Sediments of large, deep lakes generally showed lower in-situ N gene expression than agriculture-influenced lakes, and half of the pristine-alpine lakes. This implies that prolonged OM mineralization in the water column can lead to the suppression of benthic N gene expression.
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Affiliation(s)
- Kathrin B L Baumann
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland
| | - Alessandra Mazzoli
- Department of Environmental Sciences, University of Basel, 4056 Basel, Switzerland
| | - Guillem Salazar
- Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zurich, 8093 Zurich, Switzerland
| | - Hans-Joachim Ruscheweyh
- Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zurich, 8093 Zurich, Switzerland
| | - Beat Müller
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland
| | - Robert Niederdorfer
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland
| | - Shinichi Sunagawa
- Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zurich, 8093 Zurich, Switzerland
| | - Mark A Lever
- Institute of Biogeochemistry and Pollutant Dynamics, ETH Zurich, 8092 Zurich, Switzerland
- Now at Marine Science Institute, University of Texas at Austin, Port Aransas, 78373 TX, United States
| | - Moritz F Lehmann
- Department of Environmental Sciences, University of Basel, 4056 Basel, Switzerland
| | - Helmut Bürgmann
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland
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Zhou Z, Ali A, Xu L, Su J, Liu S, Li X. Simultaneous removal of phosphorus, zinc, and lead from oligotrophic ecosystem by iron-driven denitrification: Performance and mechanisms. ENVIRONMENTAL RESEARCH 2023; 238:117139. [PMID: 37716392 DOI: 10.1016/j.envres.2023.117139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Revised: 08/27/2023] [Accepted: 09/13/2023] [Indexed: 09/18/2023]
Abstract
Based on the current situation of complex pollution caused in surface water by oligotrophic condition and heavy metal release from river and lake bottom sediments. This study aimed to achieve the simultaneous removal of nitrate, phosphorus, Zn2+ and Pb2+ through microbial approach. At nitrate concentration of 4.82 mg L-1, carbon to nitrogen ratio of 1.5, pH of 6.0, and Fe2+ concentration of 5.0 mg L-1, the nitrate removal efficiency of Zoogloea sp. FY-6 reached 95.17%. The addition of pollutants under these conditions resulted in 88.76% removal of total phosphorus at 18 h, and 85.46 and 78.59% removal of Zn2+ and Pb2+ respectively, and there was competition for adsorption between Zn2+ and Pb2+. Extracellular polymers and fluorescence excitation-emission substrates confirmed that Fe2+ reduced heavy metal toxicity through promoting bacterial production of secretions and promotes denitrification as a carbon source. Meanwhile, contaminant removal curves and Fourier transform infrared spectroscopy, X-ray diffraction, and X-ray photoelectron spectroscopy demonstrated the synchronous removal of Zn2+ and Pb2+ mainly through biological action and the formation of nanoscale iron oxides. Biological-iron precipitation also provided adsorption sites for phosphorus. This research provides the theoretical foundation for applying microorganisms to restore oligotrophic source water (rivers and lakes) containing complex pollutants.
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Affiliation(s)
- Zhennan Zhou
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, China.
| | - Amjad Ali
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, China
| | - Liang Xu
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, China
| | - Junfeng Su
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, China; State Key Laboratory of Green Building in West China, Xi'an University of Architecture and Technology, Xi'an, 710055, China.
| | - Shuyu Liu
- School of Environment and Chemistry Engineering, Shanghai University, Shanghai, 200444, China.
| | - Xuan Li
- College of Environmental Science & Engineering, Yancheng Institute of Technology, Yancheng, 224051, China
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Zhang Y, Bao J, Du J, Mao Q, Cheng B. Comprehensive metagenomic and enzyme activity analysis reveals the inhibitory effects and potential toxic mechanism of tetracycline on denitrification in groundwater. WATER RESEARCH 2023; 247:120803. [PMID: 37922638 DOI: 10.1016/j.watres.2023.120803] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2023] [Revised: 09/28/2023] [Accepted: 10/27/2023] [Indexed: 11/07/2023]
Abstract
The widespread use of tetracycline (TC) inevitably leads to its increasing emission into groundwater. However, the potential risks of TC to denitrification in groundwater remain unclear. In this study, the effects of TC on denitrification in groundwater were systematically investigated at both the protein and gene levels from the electron behavior aspect for the first time. The results showed that increasing TC from 0 to 10 µg·L-1 decreased the nitrate removal rate from 0.41 to 0.26 mg·L-1·h-1 while enhancing the residual nitrite concentration from 0.52 mg·L-1 to 50.60 mg·L-1 at the end of the experiment. From a macroscopic view, 10 µg·L-1 TC significantly inhibited microbial growth and altered microbial community structure and function in groundwater, which induced the degeneration of denitrification. From the electron behavior aspect (the electron production, electron transport and electron consumption processes), 10 µg·L-1 TC decreased the concentration of electron donors (nicotinamide adenine dinucleotide, NADH), electron transport system activity, and denitrifying enzyme activities at the protein level. At the gene level, 10 µg·L-1 TC restricted the replication of genes related to carbon metabolism, the electron transport system and denitrification. Moreover, discrepant inhibitory effects of TC on individual denitrification steps, which led to the accumulation of nitrite, were observed in this study. These results provide the information that is necessary for evaluating the potential environmental risk of antibiotics on groundwater denitrification and bring more attention to their effects on geochemical nitrogen cycles.
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Affiliation(s)
- Yi Zhang
- School of Environment Studies, China University of Geosciences, Wuhan 430074, PR China
| | - Jianguo Bao
- School of Environment Studies, China University of Geosciences, Wuhan 430074, PR China.
| | - Jiangkun Du
- School of Environment Studies, China University of Geosciences, Wuhan 430074, PR China
| | - Qidi Mao
- School of Environment Studies, China University of Geosciences, Wuhan 430074, PR China
| | - Benai Cheng
- School of Environment Studies, China University of Geosciences, Wuhan 430074, PR China
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Wang K, Du W, Liu Z, Liu R, Guan Q, He L, Zhou H. Extracellular electron transfer for aerobic denitrification mediated by the bioelectric catalytic system with zero-carbon source. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 268:115691. [PMID: 37979359 DOI: 10.1016/j.ecoenv.2023.115691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 10/30/2023] [Accepted: 11/12/2023] [Indexed: 11/20/2023]
Abstract
The slow rate of electron transfer and the large consumption of carbon sources are technical bottlenecks in the biological treatment of wastewater. Here, we first proposed to domesticate aerobic denitrifying bacteria (ADB) from heterotrophic to autotrophic by electricity (0.6 V) under zero organic carbon source conditions, to accelerate electron transfer and shorten hydraulic retention time (HRT) while increasing the biodegradation rate. Then we investigated the extracellular electron transfer (EET) mechanism mediated by this process, and additionally examined the integrated nitrogen removal efficiency of this system with composite pollution. It was demonstrated that compared with the traditional membrane bioreactor (MBR), the BEC displayed higher nitrogen removal efficiency. Especially at C/N = 0, the BEC exhibited a NO3--N removal rate of 95.42 ± 2.71 % for 4 h, which was about 6.5 times higher than that of the MBR. Under the compound pollution condition, the BEC still maintained high NO3--N and tetracycline removal (94.52 ± 2.01 % and 91.50 ± 0.001 %), greatly superior to the MBR (10.64 ± 2.01 % and 12.00 ± 0.019 %). In addition, in-situ electrochemical tests showed that the nitrate in the BEC could be directly converted to N2 by reduction using electrons from the cathode, which was successfully demonstrated as a terminal electron acceptor.
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Affiliation(s)
- Kun Wang
- Faculty of Civil Engineering and Mechanics, Kunming University of Science and Technology, Kunming 650500, China
| | - Wentao Du
- Faculty of Civil Engineering and Mechanics, Kunming University of Science and Technology, Kunming 650500, China
| | - Zilian Liu
- Faculty of Civil Engineering and Mechanics, Kunming University of Science and Technology, Kunming 650500, China
| | - Runhang Liu
- Faculty of Chemical Engineering, Kunming University of Science and Technology, Kunming 650500, China
| | - Qingqing Guan
- Faculty of Civil Engineering and Mechanics, Kunming University of Science and Technology, Kunming 650500, China; Key Laboratory of Oil and Gas Fine Chemicals of Ministry of Education, College of Chemical Engineering, Xinjiang University, Urumqi, Xinjiang 830046, China
| | - Liang He
- Faculty of Chemical Engineering, Kunming University of Science and Technology, Kunming 650500, China.
| | - Huajing Zhou
- Faculty of Civil Engineering and Mechanics, Kunming University of Science and Technology, Kunming 650500, China.
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Zhou X, Fujiwara T, Hidaka T, Nishimura F, Nakanishi T, Terada A, Hori T. Evaluation of nitrous oxide emission during ammonia retention from simulated industrial wastewater by microaerobic activated sludge process. WATER RESEARCH 2023; 247:120780. [PMID: 37950949 DOI: 10.1016/j.watres.2023.120780] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 10/07/2023] [Accepted: 10/22/2023] [Indexed: 11/13/2023]
Abstract
Considering the reciprocating processes of nitrogen gas (N2) fixation to ammonia (NH4-N) and NH4-N removal to N2 through nitrification and denitrification during wastewater treatment, a microaerobic activated sludge process (MAS) is proposed in this study as a pretreatment to retain NH4-N from high-strength nitrogenous wastewater for further NH4-N recovery through membrane technology, that is, inhibit nitrification, with sufficient removal of total organic carbon (TOC). With DO and pH control, the 3-reactor bench-scale MAS systems successfully realized an NH4-N retention rate of over 80 %, with TOC removal rates of over 90 %. In addition, the emissions of carbon dioxide (CO2) and nitrous oxide (N2O) during MAS were evaluated. The total N2O emissions were 407 and 475 mg-N/day when pH was controlled at 6.2 (S1) and 6.8 (S2), respectively, with average emission factors to total nitrogen load over 2 % in both systems. Also, the global warming potential of N2O is one order of magnitude larger than that of CO2, indicating the significance of N2O in the MAS process. Therefore, the mechanisms of N2O emission from each reactor were investigated. The first reactor, where most of the TOC was adsorbed, emitted only 1.98 % (S1) and 2.43 % (S2) of the total N2O emissions through the denitrification of nitrite and nitrate (NOx) from the return sludge. The second reactor emitted 79.9 % (S1) and 69.0 % (S2) of the total N2O with the emission rates the same order of magnitude as the NOx production rates. Multiple pathways were considered to contribute to the high N2O emissions, and biotic NH2OH oxidation was one potential pathway at pH 6.2. Finally, the third reactor emitted 9.98 % (S1) and 16.8 % (S2) of the total N2O by nitrifier denitrification. Overall, this study showed that the large N2O emissions under nitrification-inhibiting conditions of the MAS process owed to the incomplete nitrification under acidic conditions and large abundances of denitrifiers. On the other hand, the lower N2O emissions at pH 6.2 evidenced the potential N2O mitigation under slightly more acidic conditions, underlining the necessity of further study on N2O mitigation when adapting to the trend of NH4-N recovery.
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Affiliation(s)
- Xinyi Zhou
- Graduate School of Global Environmental Studies, Kyoto University, Kyoto University Katsura, Nishikyo, Kyoto 615-8540, Japan
| | - Taku Fujiwara
- Graduate School of Global Environmental Studies, Kyoto University, Kyoto University Katsura, Nishikyo, Kyoto 615-8540, Japan; Department of Environmental Engineering, Graduate School of Engineering, Kyoto University, Kyoto University Katsura, Nishikyo, Kyoto 615-8540, Japan.
| | - Taira Hidaka
- Department of Environmental Engineering, Graduate School of Engineering, Kyoto University, Kyoto University Katsura, Nishikyo, Kyoto 615-8540, Japan
| | - Fumitake Nishimura
- Research Center for Environmental Quality Management, Graduate School of Engineering, Kyoto University, 1-2 Yumihama, Otsu 520-0811, Japan
| | - Tomohiro Nakanishi
- Department of Environmental Engineering, Graduate School of Engineering, Kyoto University, Kyoto University Katsura, Nishikyo, Kyoto 615-8540, Japan
| | - Akihiko Terada
- Department of Applied Physics and Chemical Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo 184-8588, Japan
| | - Tomoyuki Hori
- Environmental Management Research Institute, National Institute of Advanced Industrial Science and Technology, Onogawa 16-1, Tsukuba 305-8569, Japan
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Zhi Z, Bian Z, Chen Y, Zhang X, Wu Y, Wu H. Horizontal and Vertical Comparison of Microbial Community Structures in a Low Permeability Reservoir at the Local Scale. Microorganisms 2023; 11:2862. [PMID: 38138006 PMCID: PMC10745628 DOI: 10.3390/microorganisms11122862] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 11/23/2023] [Accepted: 11/24/2023] [Indexed: 12/24/2023] Open
Abstract
Petroleum microorganisms play a crucial role in the application of microbial-enhanced oil recovery, and the community structures of petroleum microorganisms have been widely studied. Due to variations in reservoir geological conditions, reservoir microbial communities exhibit unique characteristics. However, previous studies have primarily focused on microbial community changes within a single well, a single block, and before and after water flooding, and thus, cross-horizon and cross-regional comparative studies of in situ microbial communities are lacking. In this study, the 16S rRNA full-length sequencing method was adopted to study bacterial communities in crude oil samples taken from two wells at the same depths (depths of 2425 m and 2412 m) but approximately 20 km apart in the Hujianshan oilfield, located in the Ordos Basin. At the same time, the results were combined with another layer of research data from another article (from a depth of 2140 m). The aim was to compare the differences in the microbial community structures between the oil wells on a horizontal scale and a vertical scale. The results revealed that there were minimal differences in the microbial community structures that were influenced by the horizontal distances within a small range (<20 km), while differences were observed at a larger spatial scale. However, the dominant bacteria (Proteobacteria and Bacteroidetes) in the different oilfields were similar. Vertical depth variations (>300 m) had significant impacts on the communities, and this was mainly controlled by temperature. The greater the depth, the higher formation temperature, leading to an increase in thermophilic and anaerobic bacteria within a community.
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Affiliation(s)
- Zena Zhi
- State Key Laboratory of Continental Dynamics, Department of Geology, Northwest University, Xi’an 710069, China; (Z.Z.); (Z.B.)
| | - Ziwei Bian
- State Key Laboratory of Continental Dynamics, Department of Geology, Northwest University, Xi’an 710069, China; (Z.Z.); (Z.B.)
| | - Yuan Chen
- College of Food Science and Technology, Northwest University, Xi’an 710069, China;
| | - Xiangchun Zhang
- College of Biology and Agriculture, Zunyi Normal University, Zunyi 563006, China;
| | - Yifei Wu
- College of Food Science and Technology, Northwest University, Xi’an 710069, China;
| | - Hanning Wu
- State Key Laboratory of Continental Dynamics, Department of Geology, Northwest University, Xi’an 710069, China; (Z.Z.); (Z.B.)
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Zheng X, Yan Z, Zhao C, He L, Lin Z, Liu M. Homogeneous environmental selection mainly determines the denitrifying bacterial community in intensive aquaculture water. Front Microbiol 2023; 14:1280450. [PMID: 38029183 PMCID: PMC10653326 DOI: 10.3389/fmicb.2023.1280450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 10/18/2023] [Indexed: 12/01/2023] Open
Abstract
Nitrate reduction by napA (encodes periplasmic nitrate reductase) bacteria and nitrous oxide reduction by nosZ (encodes nitrous oxide reductase) bacteria play important roles in nitrogen cycling and removal in intensive aquaculture systems. This study investigated the diversity, dynamics, drivers, and assembly mechanisms of total bacteria as well as napA and nosZ denitrifiers in intensive shrimp aquaculture ponds over a 100-day period. Alpha diversity of the total bacterial community increased significantly over time. In contrast, the alpha diversity of napA and nosZ bacteria remained relatively stable throughout the aquaculture process. The community structure changed markedly across all groups over the culture period. Total nitrogen, phosphate, total phosphorus, and silicate were identified as significant drivers of the denitrifying bacterial communities. Network analysis revealed complex co-occurrence patterns between total, napA, and nosZ bacteria which fluctuated over time. A null model approach showed that, unlike the total community dominated by stochastic factors, napA and nosZ bacteria were primarily governed by deterministic processes. The level of determinism increased with nutrient loading, suggesting the denitrifying community can be manipulated by bioaugmentation. The dominant genus Ruegeria may be a promising candidate for introducing targeted denitrifiers into aquaculture systems to improve nitrogen removal. Overall, this study provides important ecological insights into aerobic and nitrous oxide-reducing denitrifiers in intensive aquaculture, supporting strategies to optimize microbial community structure and function.
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Affiliation(s)
- Xiafei Zheng
- Ninghai Institute of Mariculture Breeding and Seed Industry, Zhejiang Wanli University, Ningbo, China
- Zhejiang Key Laboratory of Aquatic Germplasm Resource, College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, China
| | - Zhongneng Yan
- Ninghai Institute of Mariculture Breeding and Seed Industry, Zhejiang Wanli University, Ningbo, China
- Zhejiang Key Laboratory of Aquatic Germplasm Resource, College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, China
| | - Chenxi Zhao
- Ninghai Institute of Mariculture Breeding and Seed Industry, Zhejiang Wanli University, Ningbo, China
- Zhejiang Key Laboratory of Aquatic Germplasm Resource, College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, China
| | - Lin He
- Ninghai Institute of Mariculture Breeding and Seed Industry, Zhejiang Wanli University, Ningbo, China
- Zhejiang Key Laboratory of Aquatic Germplasm Resource, College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, China
| | - Zhihua Lin
- Ninghai Institute of Mariculture Breeding and Seed Industry, Zhejiang Wanli University, Ningbo, China
- Zhejiang Key Laboratory of Aquatic Germplasm Resource, College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, China
| | - Minhai Liu
- Ninghai Institute of Mariculture Breeding and Seed Industry, Zhejiang Wanli University, Ningbo, China
- Zhejiang Key Laboratory of Aquatic Germplasm Resource, College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, China
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50
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Wu G, Yang G, Sun X, Li B, Tian Z, Niu X, Cheng J, Feng L. Simultaneous denitrification and organics removal by denitrifying bacteria inoculum in a multistage biofilm process for treating desulfuration and denitration wastewater. BIORESOURCE TECHNOLOGY 2023; 388:129757. [PMID: 37714492 DOI: 10.1016/j.biortech.2023.129757] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2023] [Revised: 09/04/2023] [Accepted: 09/07/2023] [Indexed: 09/17/2023]
Abstract
This study aimed to treat real wastewater from the desulfuration and denitration process in a petrochemical plant with high-strength nitrogen (TN≈200 mg/L, > 90% nitrate), sulfate (2.7%) and extremely low-strength organics (CODCr < 30 mg/L). Heterotrophic denitrification of multistage anoxic and oxic biofilm (MAOB) process in three tanks using facultative denitrifying bacteria inoculum was developed to simultaneously achieve desirable effluent nitrogen and organics at different hydraulic retention time (HRT) and carbon to nitrogen (C/N) mass ratios. The optimum condition was recommended as a C/N ratio of 1.5 and a HRT of A (24 h)/O (12-24 h) to achieve > 90% of nitrogen and organics removal as well as no significant variation of sulfate. The denitrifying biofilm in various tanks was dominant by Hyphomicrobium (8.9%-25.7%), Methylophaga (18.6%-25.8%) and Azoarcus (3.3%-19.6%), etc., containing > 20% aerobic denitrifiers. This explained that oxic zone in MAOB process also exhibited simultaneous nitrogen and organics removal.
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Affiliation(s)
- Guiyang Wu
- Zhejiang Key Laboratory of Petrochemical Environmental Pollution Control, Zhejiang Ocean University, Zhoushan 316022, China
| | - Guangfeng Yang
- Zhejiang Key Laboratory of Petrochemical Environmental Pollution Control, Zhejiang Ocean University, Zhoushan 316022, China; National-Local Joint Engineering Laboratory of Harbor Oil & Gas Storage and Transportation Technology, Zhoushan 316022, China
| | - Xiaoran Sun
- Zhejiang Key Laboratory of Petrochemical Environmental Pollution Control, Zhejiang Ocean University, Zhoushan 316022, China
| | - Bu Li
- Sinopec Luoyang Petrochemical Engineering Corporation, Luoyang 471003, China
| | - Zhijuan Tian
- Sinopec Luoyang Petrochemical Engineering Corporation, Luoyang 471003, China
| | - Xinzheng Niu
- Sinopec Luoyang Petrochemical Engineering Corporation, Luoyang 471003, China
| | - Junmei Cheng
- Sinopec Luoyang Petrochemical Engineering Corporation, Luoyang 471003, China
| | - Lijuan Feng
- Zhejiang Key Laboratory of Petrochemical Environmental Pollution Control, Zhejiang Ocean University, Zhoushan 316022, China; National-Local Joint Engineering Laboratory of Harbor Oil & Gas Storage and Transportation Technology, Zhoushan 316022, China.
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