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Wang M, Gao Z, Jiang Q, Mu X, Jiang Y, Li Y, Zhang S, Cao W, Guo L. Surface display of CadR protein on Rhodopseudomonas palustris CGA009 for enhanced heavy metal bioremediation. JOURNAL OF HAZARDOUS MATERIALS 2025; 494:138592. [PMID: 40373394 DOI: 10.1016/j.jhazmat.2025.138592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2024] [Revised: 05/10/2025] [Accepted: 05/10/2025] [Indexed: 05/17/2025]
Abstract
Heavy metal pollution poses significant ecological and public health risks, and surface display engineering shows promise for bioremediation in this area. Although anoxygenic photosynthetic purple nonsulfur bacteria (PNSB) have been effectively applied to degrade pollutants due to their metabolic versatility, the use of surface display technology in PNSB remains very limited. In this study, we constructed a surface display system using Rhodopseudomonas palustris CGA009 as the host. The metal-binding protein CadR was fused with outer membrane protein A (OmpA) and expressed in CGA009. SDS-PAGE and immunofluorescence analysis identified the successful expression of the fusion protein on the cell surface. In addition, we used flow cytometry to explore the enhancement effects of linker peptides and different promoters on surface display efficiency under different light intensities. The surface display system enhanced the heavy metal resistance of the host bacteria, and the maximum removal rate of Cd2 + reached 95.6 %. By means of Langmuir isotherm analysis, the maximum biosorption capacity of the system for Cd2+ is 101.11 mg/g. The system demonstrates feasibility for application in complex real-world environmental samples. The presence of various metal ions does not interfere with the system's specific adsorption of Cd²⁺. It can stably maintain an adsorption efficiency of over 80 % under conditions of pH 6-8, temperatures of 20-35°C, and light intensity of 1000-6000 lux. Additionally, the system achieves a removal efficiency of 94.3 % in Cd wastewater. In summary, this study provides a reference for the development of photosynthetic bacterial surface display systems and provides an advanced bioremediation strategy for heavy metal contaminated wastewater.
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Affiliation(s)
- Minmin Wang
- State Key Laboratory of Multiphase Flow in Power Engineering, Xi'an Jiaotong University, Xianning West Road, Xi'an 710049, China
| | - Zixuan Gao
- State Key Laboratory of Multiphase Flow in Power Engineering, Xi'an Jiaotong University, Xianning West Road, Xi'an 710049, China
| | - Qiushi Jiang
- State Key Laboratory of Multiphase Flow in Power Engineering, Xi'an Jiaotong University, Xianning West Road, Xi'an 710049, China
| | - Xuefang Mu
- State Key Laboratory of Multiphase Flow in Power Engineering, Xi'an Jiaotong University, Xianning West Road, Xi'an 710049, China
| | - Youmin Jiang
- State Key Laboratory of Multiphase Flow in Power Engineering, Xi'an Jiaotong University, Xianning West Road, Xi'an 710049, China
| | - Yanjing Li
- State Key Laboratory of Multiphase Flow in Power Engineering, Xi'an Jiaotong University, Xianning West Road, Xi'an 710049, China
| | - Sihu Zhang
- State Key Laboratory of Multiphase Flow in Power Engineering, Xi'an Jiaotong University, Xianning West Road, Xi'an 710049, China
| | - Wen Cao
- State Key Laboratory of Multiphase Flow in Power Engineering, Xi'an Jiaotong University, Xianning West Road, Xi'an 710049, China.
| | - Liejin Guo
- State Key Laboratory of Multiphase Flow in Power Engineering, Xi'an Jiaotong University, Xianning West Road, Xi'an 710049, China.
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Khan A, Anwar M, Rehman AU, Shokouhimehr M, Reis NM, Kalhoro KA, Zhang C, Liu Z. Biorecognition-based electrochemical sensors for highly sensitive C-reactive protein detection: A review. Int J Biol Macromol 2025; 304:140829. [PMID: 39938854 DOI: 10.1016/j.ijbiomac.2025.140829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2024] [Revised: 01/23/2025] [Accepted: 02/07/2025] [Indexed: 02/14/2025]
Abstract
Highly sensitive C-reactive protein (hsCRP) is a widely recognized biomarker for inflammation and cardiovascular diseases and plays a critical role in early diagnosis, risk assessment, and treatment monitoring. The development of sensitive and selective techniques for hsCRP detection is of paramount importance for clinical diagnostics. Electrochemical sensors have emerged as promising alternatives to traditional methods, offering rapid, cost-effective, and portable solutions for hsCRP analysis. This review comprehensively discusses advancements in biorecognition-based electrochemical sensors for hsCRP detection, focusing on label- and label-free approaches. This review highlights the sensor principles, designs, and performance, and emphasizes their advantages as well as limitations in various target applications. Recent studies have shown the potential of both label- and label-free-based sensors to achieve low detection limits and wide linear ranges comparable to traditional methods. In addition, we discuss the mechanisms, challenges, and future directions of biorecognition-based electrochemical sensors for hsCRP detection. This innovation can potentially revolutionize the diagnosis and treatment of cardiovascular and inflammatory diseases by enhancing the detection sensitivity and specificity. Ultimately, these advancements aim to improve patient outcomes by enabling earlier diagnosis, cost-effectiveness, and more precise monitoring, contributing to more effective management of cardiovascular health globally.
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Affiliation(s)
- Adil Khan
- School of Electronic Information, Central South University, Changsha 410083, China; School of Physics, Central South University, Changsha 410083, China
| | - Muhammad Anwar
- School of Electronic Information, Central South University, Changsha 410083, China; School of Physics, Central South University, Changsha 410083, China
| | - Atiq Ur Rehman
- School of Physics, Central South University, Changsha 410083, China
| | - Mohammadreza Shokouhimehr
- Department of Materials Science and Engineering, Research Institute of Advanced Materials, Seoul National University, Seoul 08826, Republic of Korea; Institute of Nanosensor Technology, Hanyang University, Ansan 15588, Republic of Korea
| | - Nuno M Reis
- Department of Chemical Engineering and Centre for Bioengineering & Biomedical Technologies (CBio), University of Bath, Claverton Down, Bath BA2 7AY, UK
| | - Kashif Ali Kalhoro
- School of Electronic Information, Central South University, Changsha 410083, China; School of Physics, Central South University, Changsha 410083, China; Sukkur IBA University, Sukkur 65200, Pakistan
| | - Chi Zhang
- School of Electronic Information, Central South University, Changsha 410083, China; School of Physics, Central South University, Changsha 410083, China
| | - Zhengchun Liu
- School of Electronic Information, Central South University, Changsha 410083, China; School of Physics, Central South University, Changsha 410083, China.
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He N, Wang Z, Lei L, Chen C, Qin Y, Tang J, Dai K, Xu H. Enhancing high-efficient cadmium biosorption of Escherichia coli via cell surface displaying metallothionien CUP1. ENVIRONMENTAL TECHNOLOGY 2025; 46:1021-1030. [PMID: 39016212 DOI: 10.1080/09593330.2024.2375006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Accepted: 06/22/2024] [Indexed: 07/18/2024]
Abstract
Cadmium (Cd) is one of the common heavy metal pollutants in soil, which can induce various diseases and pose a serious threat to human health. Metallothioneins (MTs) are well-known for their excellent metal binding ability due to a high content of cysteine, which has great potential for heavy metal chelation. In this study, we used the Escherichia coli (E. coli) surface display system LPP-OmpA to construct a recombinant plasmid pBSD-LCF encoding LPP-OmpA-CUP1-Flag fusion protein. Then we displayed the metallothionein CUP1 from Saccharomyces cerevisiae on E. coli DH5α surface for Cd removing. The feasibility of surface display of metallothionein CUP1 in recombinant E. coli DH5α (pBSD-LCF) by Lpp-OmpA system was proved by flow cytometry and western blot analysis, and the specificity of the fusion protein in the recombinant strain was also verified. The results showed that the Cd2+ resistance capacity of DH5α (pBSD-LCF) was highly enhanced by about 200%. Fourier-transform infrared spectroscopy showed that sulfhydryl and sulfonyl groups were involved in Cd2+ binding to cell surface of DH5α (pBSD-LCF). Meanwhile, Cd removal rate by DH5α (pBSD-LCF) was promoted to 95.2%. Thus, the recombinant strain E. coli DH5α (pBSD-LCF) can effectively chelate environmental metals, and the cell surface expression of metallothionein on E. coli can provide new ideas and directions for heavy metals remediation.
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Affiliation(s)
- Nan He
- College of Medical Technology, Chengdu University of Traditional Chinese Medicine, Chengdu, People's Republic of China
| | - Ziru Wang
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, People's Republic of China
- Key Laboratory of Environment Protection, Soil Ecological Protection and Pollution Control, Sichuan University and Department of Ecology and Environment of Sichuan, Chengdu, People's Republic of China
| | - Ling Lei
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, People's Republic of China
- Key Laboratory of Environment Protection, Soil Ecological Protection and Pollution Control, Sichuan University and Department of Ecology and Environment of Sichuan, Chengdu, People's Republic of China
| | - Changxuan Chen
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, People's Republic of China
- Key Laboratory of Environment Protection, Soil Ecological Protection and Pollution Control, Sichuan University and Department of Ecology and Environment of Sichuan, Chengdu, People's Republic of China
| | - Yixian Qin
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, People's Republic of China
- Key Laboratory of Environment Protection, Soil Ecological Protection and Pollution Control, Sichuan University and Department of Ecology and Environment of Sichuan, Chengdu, People's Republic of China
| | - Jingxiang Tang
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, People's Republic of China
- Key Laboratory of Environment Protection, Soil Ecological Protection and Pollution Control, Sichuan University and Department of Ecology and Environment of Sichuan, Chengdu, People's Republic of China
| | - Kecheng Dai
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, People's Republic of China
- Key Laboratory of Environment Protection, Soil Ecological Protection and Pollution Control, Sichuan University and Department of Ecology and Environment of Sichuan, Chengdu, People's Republic of China
| | - Heng Xu
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, People's Republic of China
- Key Laboratory of Environment Protection, Soil Ecological Protection and Pollution Control, Sichuan University and Department of Ecology and Environment of Sichuan, Chengdu, People's Republic of China
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Gul I, Adil M, Lv F, Li T, Chen Y, Lu H, Ahamad MI, Lu S, Feng W. Microbial strategies for lead remediation in agricultural soils and wastewater: mechanisms, applications, and future directions. Front Microbiol 2024; 15:1434921. [PMID: 39364167 PMCID: PMC11448482 DOI: 10.3389/fmicb.2024.1434921] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2024] [Accepted: 07/25/2024] [Indexed: 10/05/2024] Open
Abstract
High lead (Pb) levels in agricultural soil and wastewater threaten ecosystems and organism health. Microbial remediation is a cost-effective, efficient, and eco-friendly alternative to traditional physical or chemical methods for Pb remediation. Previous research indicates that micro-organisms employ various strategies to combat Pb pollution, including biosorption, bioprecipitation, biomineralization, and bioaccumulation. This study delves into recent advancements in Pb-remediation techniques utilizing bacteria, fungi, and microalgae, elucidating their detoxification pathways and the factors that influence Pb removal through specific case studies. It investigates how bacteria immobilize Pb by generating nanoparticles that convert dissolved lead (Pb-II) into less harmful forms to mitigate its adverse impacts. Furthermore, the current review explores the molecular-level mechanisms and genetic engineering techniques through which microbes develop resistance to Pb. We outline the challenges and potential avenues for research in microbial remediation of Pb-polluted habitats, exploring the interplay between Pb and micro-organisms and their potential in Pb removal.
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Affiliation(s)
- Isma Gul
- College of Geography and Environmental Science/Key Research Institute of Yellow River Civilization and Sustainable Development and Collaborative Innovation Center on Yellow River Civilization of Henan Province, Henan University, Kaifeng, China
| | - Muhammad Adil
- College of Geography and Environmental Science/Key Research Institute of Yellow River Civilization and Sustainable Development and Collaborative Innovation Center on Yellow River Civilization of Henan Province, Henan University, Kaifeng, China
| | - Fenglin Lv
- College of Geography and Environmental Science/Key Research Institute of Yellow River Civilization and Sustainable Development and Collaborative Innovation Center on Yellow River Civilization of Henan Province, Henan University, Kaifeng, China
| | - Tingting Li
- College of Geography and Environmental Science/Key Research Institute of Yellow River Civilization and Sustainable Development and Collaborative Innovation Center on Yellow River Civilization of Henan Province, Henan University, Kaifeng, China
| | - Yi Chen
- College of Geography and Environmental Science/Key Research Institute of Yellow River Civilization and Sustainable Development and Collaborative Innovation Center on Yellow River Civilization of Henan Province, Henan University, Kaifeng, China
| | - Heli Lu
- College of Geography and Environmental Science/Key Research Institute of Yellow River Civilization and Sustainable Development and Collaborative Innovation Center on Yellow River Civilization of Henan Province, Henan University, Kaifeng, China
- Key Laboratory of Geospatial Technology for the Middle and Lower Yellow River Regions (Henan University), Ministry of Education/National Demonstration Center for Environment and Planning, Henan University, Kaifeng, China
- Henan Dabieshan National Field Observation and Research Station of Forest Ecosystem, Zhengzhou, China
- Laboratory of Climate Change Mitigation and Carbon Neutrality, Henan University, Zhengzhou, China
- Xinyang Academy of Ecological Research, Xinyang, China
- Henan Key Laboratory of Earth System Observation and Modeling, Henan University, Kaifeng, China
| | - Muhammad Irfan Ahamad
- College of Geography and Environmental Science/Key Research Institute of Yellow River Civilization and Sustainable Development and Collaborative Innovation Center on Yellow River Civilization of Henan Province, Henan University, Kaifeng, China
| | - Siqi Lu
- Department of Geography, Sustainability, Community, and Urban Studies, University of Connecticut, Storrs, CT, United States
| | - Wanfu Feng
- The Forest Science Research Institute of Xinyang, Xinyang, Henan, China
- Henan Jigongshan Forest Ecosystem National Observation and Research Station, Xinyang, Henan, China
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Yang K, Zhao G, Li H, Tian X, Xu L, Yan J, Xie X, Yan Y, Yang M. Modification of Yarrowia lipolytica via metabolic engineering for effective remediation of heavy metals from wastewater. JOURNAL OF HAZARDOUS MATERIALS 2024; 476:134954. [PMID: 38936184 DOI: 10.1016/j.jhazmat.2024.134954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Revised: 06/11/2024] [Accepted: 06/16/2024] [Indexed: 06/29/2024]
Abstract
With the increasing demand for heavy metals due to the advancement of industrial activities, large proportions of heavy metals have been discharged into aquatic ecosystems, causing serious harm to human health and the environment. Existing physical and chemical methods for recovering heavy metals from wastewater encounter challenges, such as low efficiency, high processing costs, and potential secondary pollution. In this study, we developed a novel approach by engineering the endogenous sulphur metabolic pathway of Yarrowia lipolytica, providing it with the ability to produce approximately 550 ppm of sulphide. Subsequently, sulphide-producing Y. lipolytica was used for the first time in heavy metal remediation. The engineered strain exhibited a high capacity to remove various heavy metals, especially achieving over 90 % for cadmium (Cd), copper (Cu) and lead (Pb). This capacity was consistent when applied to both synthetic and actual wastewater samples. Microscopic analyses revealed that sulphide-mediated biological precipitation of metal sulphides on the cell surface is responsible for their removal. Our findings demonstrate that sulphide-producing yeasts are a robust and effective bioremediation strategy for heavy metals, showing great potential for future heavy metal pollution remediation practices.
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Affiliation(s)
- Kaixin Yang
- Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Guowei Zhao
- Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Huanhuan Li
- Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Xiaoke Tian
- Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Li Xu
- Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Jinyong Yan
- Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Xiaoman Xie
- Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China.
| | - Yunjun Yan
- Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China.
| | - Min Yang
- Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China.
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6
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Chokshi K, Kavanagh K, Khan I, Slaveykova VI, Sieber S. Surface displayed MerR increases mercury accumulation by green microalga Chlamydomonas reinhardtii. ENVIRONMENT INTERNATIONAL 2024; 189:108813. [PMID: 38878502 DOI: 10.1016/j.envint.2024.108813] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Revised: 05/22/2024] [Accepted: 06/10/2024] [Indexed: 06/19/2024]
Abstract
Mercury is a highly toxic trace metal that can accumulate in aquatic ecosystems and when resent at high concentrations can pose risks to both aquatic life and humans consuming contaminated fish. This research explores the use of the metalloregulatory protein MerR, known for its high affinity and selectivity toward mercury, in a novel application. Through a cell surface engineering approach, MerR was displayed on cells of green alga Chlamydomonas reinhardtii. A hydroxyproline-rich GP1 protein was used as an anchor to construct the engineered strains GP1-MerR that expresses the fluorescent protein mVenus. The surface engineered GP1-MerR strain led up to five folds higher Hg2+ accumulation compared to the WT strain at concentration range from 10-9 to 10-7 M Hg2+. The binding of Hg2+ via MerR was specific and did not get significantly affected by major freshwater water quality variables such as Ca2+ and dissolved organic matter. The presence of other trace metals (Zn2+, Cu2+, Ni2+, Pb2+, Cd2+) in a same concentration range even resulted in 30-40 % increase in the accumulated Hg. Further, the engineered cells also demonstrated the ability to accumulate Hg2+ from the water extracts of the Hg-contaminated sediment samples. These results demonstrate a novel approach utilizing the cell surface display system in C. reinhardtii for its potential application in bioremediation.
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Affiliation(s)
- Kaumeel Chokshi
- Department of Chemistry, University of Zurich, 8057 Zurich, Switzerland
| | - Killian Kavanagh
- Department F.A. Forel for Environmental and Aquatic Sciences, Faculty of Sciences, University of Geneva, 1211 Geneva, Switzerland
| | - Imran Khan
- Department of Chemistry, University of Zurich, 8057 Zurich, Switzerland
| | - Vera I Slaveykova
- Department F.A. Forel for Environmental and Aquatic Sciences, Faculty of Sciences, University of Geneva, 1211 Geneva, Switzerland
| | - Simon Sieber
- Department of Chemistry, University of Zurich, 8057 Zurich, Switzerland.
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Li L, Chai W, Sun C, Huang L, Sheng T, Song Z, Ma F. Role of microalgae-bacterial consortium in wastewater treatment: A review. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 360:121226. [PMID: 38795468 DOI: 10.1016/j.jenvman.2024.121226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2024] [Revised: 04/17/2024] [Accepted: 05/21/2024] [Indexed: 05/28/2024]
Abstract
In the global effort to reduce CO2 emissions, the concurrent enhancement of pollutant degradation and reductions in fossil fuel consumption are pivotal aspects of microalgae-mediated wastewater treatment. Clarifying the degradation mechanisms of bacteria and microalgae during pollutant treatment, as well as regulatory biolipid production, could enhance process sustainability. The synergistic and inhibitory relationships between microalgae and bacteria are introduced in this paper. The different stimulators that can regulate microalgal biolipid accumulation are also reviewed. Wastewater treatment technologies that utilize microalgae and bacteria in laboratories and open ponds are described to outline their application in treating heavy metal-containing wastewater, animal husbandry wastewater, pharmaceutical wastewater, and textile dye wastewater. Finally, the major requirements to scale up the cascade utilization of biomass and energy recovery are summarized to improve the development of biological wastewater treatment.
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Affiliation(s)
- Lixin Li
- School of Environment and Chemical Engineering, Heilongjiang University of Science and Technology, Harbin, 150022, China.
| | - Wei Chai
- School of Environment and Chemical Engineering, Heilongjiang University of Science and Technology, Harbin, 150022, China
| | - Caiyu Sun
- School of Environment and Chemical Engineering, Heilongjiang University of Science and Technology, Harbin, 150022, China
| | - Linlin Huang
- School of Environment and Chemical Engineering, Heilongjiang University of Science and Technology, Harbin, 150022, China
| | - Tao Sheng
- School of Environment and Chemical Engineering, Heilongjiang University of Science and Technology, Harbin, 150022, China
| | - Zhiwei Song
- School of Environment and Chemical Engineering, Heilongjiang University of Science and Technology, Harbin, 150022, China
| | - Fang Ma
- State Key Lab of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China.
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Huang M, Liu W, Qin C, Xu Y, Zhou X, Wen Q, Ma W, Huang Y, Chen X. Copper Resistance Mechanism and Copper Response Genes in Corynebacterium crenatum. Microorganisms 2024; 12:951. [PMID: 38792781 PMCID: PMC11124244 DOI: 10.3390/microorganisms12050951] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2024] [Revised: 04/29/2024] [Accepted: 04/30/2024] [Indexed: 05/26/2024] Open
Abstract
Heavy metal resistance mechanisms and heavy metal response genes are crucial for microbial utilization in heavy metal remediation. Here, Corynebacterium crenatum was proven to possess good tolerance in resistance to copper. Then, the transcriptomic responses to copper stress were investigated, and the vital pathways and genes involved in copper resistance of C. crenatum were determined. Based on transcriptome analysis results, a total of nine significantly upregulated DEGs related to metal ion transport were selected for further study. Among them, GY20_RS0100790 and GY20_RS0110535 belong to transcription factors, and GY20_RS0110270, GY20_RS0100790, and GY20_RS0110545 belong to copper-binding peptides. The two transcription factors were studied for the function of regulatory gene expression. The three copper-binding peptides were displayed on the C. crenatum surface for a copper adsorption test. Furthermore, the nine related metal ion transport genes were deleted to investigate the effect on growth in copper stress. This investigation provided the basis for utilizing C. crenatum in copper bioremediation.
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Affiliation(s)
- Mingzhu Huang
- National R&D Center of Freshwater Fish Processing, Jiangxi Normal University, Nanchang 330022, China; (M.H.); (W.L.); (Y.H.)
- School of Life Science, Jiangxi Normal University, Nanchang 330022, China; (C.Q.); (Y.X.); (X.Z.); (Q.W.); (W.M.)
| | - Wenxin Liu
- National R&D Center of Freshwater Fish Processing, Jiangxi Normal University, Nanchang 330022, China; (M.H.); (W.L.); (Y.H.)
- School of Life Science, Jiangxi Normal University, Nanchang 330022, China; (C.Q.); (Y.X.); (X.Z.); (Q.W.); (W.M.)
| | - Chunyan Qin
- School of Life Science, Jiangxi Normal University, Nanchang 330022, China; (C.Q.); (Y.X.); (X.Z.); (Q.W.); (W.M.)
| | - Yang Xu
- School of Life Science, Jiangxi Normal University, Nanchang 330022, China; (C.Q.); (Y.X.); (X.Z.); (Q.W.); (W.M.)
| | - Xu Zhou
- School of Life Science, Jiangxi Normal University, Nanchang 330022, China; (C.Q.); (Y.X.); (X.Z.); (Q.W.); (W.M.)
| | - Qunwei Wen
- School of Life Science, Jiangxi Normal University, Nanchang 330022, China; (C.Q.); (Y.X.); (X.Z.); (Q.W.); (W.M.)
| | - Wenbin Ma
- School of Life Science, Jiangxi Normal University, Nanchang 330022, China; (C.Q.); (Y.X.); (X.Z.); (Q.W.); (W.M.)
| | - Yanzi Huang
- National R&D Center of Freshwater Fish Processing, Jiangxi Normal University, Nanchang 330022, China; (M.H.); (W.L.); (Y.H.)
- School of Life Science, Jiangxi Normal University, Nanchang 330022, China; (C.Q.); (Y.X.); (X.Z.); (Q.W.); (W.M.)
| | - Xuelan Chen
- National R&D Center of Freshwater Fish Processing, Jiangxi Normal University, Nanchang 330022, China; (M.H.); (W.L.); (Y.H.)
- School of Life Science, Jiangxi Normal University, Nanchang 330022, China; (C.Q.); (Y.X.); (X.Z.); (Q.W.); (W.M.)
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Marinova P, Tamahkyarova K. Synthesis and Biological Activities of Some Metal Complexes of Peptides: A Review. BIOTECH 2024; 13:9. [PMID: 38651489 PMCID: PMC11036290 DOI: 10.3390/biotech13020009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 03/28/2024] [Accepted: 04/03/2024] [Indexed: 04/25/2024] Open
Abstract
Peptides, both natural and synthetic, are well suited for a wide range of purposes and offer versatile applications in different fields such as biocatalysts, injectable hydrogels, tumor treatment, and drug delivery. The research of the better part of the cited papers was conducted using various database platforms such as MetalPDB. The rising prominence of therapeutic peptides encompasses anticancer, antiviral, antimicrobial, and anti-neurodegenerative properties. The metals Na, K, Mg, Ca, Fe, Mn, Co, Cu, Zn, and Mo are ten of the twenty elements that are considered essential for life. Crucial for understanding the biological role of metals is the exploration of metal-bound proteins and peptides. Aside from essential metals, there are other non-essential metals that also interact biologically, exhibiting either therapeutic or toxic effects. Irregularities in metal binding contribute to diseases like Alzheimer's, neurodegenerative disorders, Wilson's, and Menkes disease. Certain metal complexes have potential applications as radiopharmaceuticals. The examination of these complexes was achieved by preforming UV-Vis, IR, EPR, NMR spectroscopy, and X-ray analysis. This summary, although unable to cover all of the studies in the field, offers a review of the ongoing experimentation and is a basis for new ideas, as well as strategies to explore and gain knowledge from the extensive realm of peptide-chelated metals and biotechnologies.
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Affiliation(s)
- Petja Marinova
- Department of General and Inorganic Chemistry with Methodology of Chemistry Education, Faculty of Chemistry, University of Plovdiv, “Tzar Assen” Str. 24, 4000 Plovdiv, Bulgaria;
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Fayaz T, Renuka N, Ratha SK. Antibiotic occurrence, environmental risks, and their removal from aquatic environments using microalgae: Advances and future perspectives. CHEMOSPHERE 2024; 349:140822. [PMID: 38042426 DOI: 10.1016/j.chemosphere.2023.140822] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2023] [Revised: 10/14/2023] [Accepted: 11/26/2023] [Indexed: 12/04/2023]
Abstract
Antibiotic pollution has caused a continuous increase in the development of antibiotic-resistant bacteria and antibiotic-resistant genes (ARGs) in aquatic environments worldwide. Algae-based bioremediation technology is a promising eco-friendly means to remove antibiotics and highly resistant ARGs, and the generated biomass can be utilized to produce value-added products of industrial significance. This review discussed the prevalence of antibiotics and ARGs in aquatic environments and their environmental risks to non-target organisms. The potential of various microalgal species for antibiotic and ARG removal, their mechanisms, strategies for enhanced removal, and future directions were reviewed. Antibiotics can be degraded into non-toxic compounds in microalgal cells through the action of extracellular polymeric substances, glutathione-S-transferase, and cytochrome P450; however, antibiotic stress can alter microalgal gene expression and growth. This review also deciphered the effect of antibiotic stress on microalgal physiology, biomass production, and biochemical composition that can impact their commercial applications.
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Affiliation(s)
- Tufail Fayaz
- Algal Biotechnology Laboratory, Department of Botany, Central University of Punjab, Bathinda, 151401, India
| | - Nirmal Renuka
- Algal Biotechnology Laboratory, Department of Botany, Central University of Punjab, Bathinda, 151401, India.
| | - Sachitra Kumar Ratha
- Algology Laboratory, CSIR-National Botanical Research Institute, Lucknow, 226001, India
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11
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Tan L, Liu M, Wang L, Zhao G, Zhang Y. Flow cytometry-based high-throughput screening of synthetic peptides for palladium adsorption. JOURNAL OF HAZARDOUS MATERIALS 2024; 461:132656. [PMID: 37793255 DOI: 10.1016/j.jhazmat.2023.132656] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 07/28/2023] [Accepted: 09/26/2023] [Indexed: 10/06/2023]
Abstract
Conventionally, the measurement of metal ion adsorption capacity in biosorbent relies on expensive and time-consuming ICP-OES technique. Herein, a semi-quantitative method to measure Pd(II) adsorption capacity of single cells has been presented by analyzing side scatter (SSC) intensity in flow cytometry. Within the sensitive range and applicable conditions, excellent linearity correlation (R2 ranges from 0.89 to 0.96) between the amount of Pd(II) absorbed on yeast and the fold increase in SSC intensity has been observed. Using this method, six strains with high Pd adsorption capacities have sorted from a yeast library with metal-binding peptides displayed (up to 107 strains) based on SSC signal intensity. The optimal peptide (EF1) displayed on yeast and E. coli surface demonstrated Pd adsorption improvements of ∼32% and ∼200%, respectively. In summary, our study proposes an alternative high-throughput method for analyzing the Pd(II) adsorption capacity of individual yeast cells, enabling the screening of specific peptides/proteins with high Pd(II) affinity from extensive libraries.
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Affiliation(s)
- Ling Tan
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China; National Center of Technology Innovation for Synthetic Biology, Tianjin 300308, China
| | - Meizi Liu
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China; National Center of Technology Innovation for Synthetic Biology, Tianjin 300308, China
| | - Lixian Wang
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China; Key Laboratory of Engineering Biology for Low-Carbon Manufacturing, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
| | - Guoping Zhao
- National Center of Technology Innovation for Synthetic Biology, Tianjin 300308, China; CAS-Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Yanfei Zhang
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China; National Center of Technology Innovation for Synthetic Biology, Tianjin 300308, China.
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12
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Kumar A, Ponmani S, Sharma GK, Sangavi P, Chaturvedi AK, Singh A, Malyan SK, Kumar A, Khan SA, Shabnam AA, Jigyasu DK, Gull A. Plummeting toxic contaminates from water through phycoremediation: Mechanism, influencing factors and future outlook to enhance the capacity of living and non-living algae. ENVIRONMENTAL RESEARCH 2023; 239:117381. [PMID: 37832769 DOI: 10.1016/j.envres.2023.117381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 09/25/2023] [Accepted: 10/10/2023] [Indexed: 10/15/2023]
Abstract
Freshwater habitats hold a unique role in the survival of all living organisms and supply water for drinking, irrigation, and life support activities. In recent decades, due to anthropogenic activities, deterioration in the water quality has been a long-lasting problem and challenge to the scientific fraternity. Although, these freshwater bodies have a bearable intrinsic capacity for pollution load however alarming increase in pollution limits the intrinsic capacities and requires additional technological interventions. The release of secondary pollutants from conventional interventions further needs revisiting the existing methodologies and asking for green interventions. Green interventions such as phycoremediation are natural, eco-friendly, economic, and energy-efficient alternatives and provide additional benefits such as nutrient recovery, biofuel production, and valuable secondary metabolites from polluted freshwater bodies. This systemic review in a nut-shell comprises the recent research insights on phycoremediation, technological implications, and influencing factors, and further discusses the associated mechanisms of metal ions biosorption by living and non-living algae, its advantages, and limitations. Besides, the article explores the possibility of future research prospects for applicability at a field scale that will help in the efficient utilization of resources, and improved ecological and health risks.
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Affiliation(s)
- A Kumar
- School of Hydrology and Water Resources, Nanjing University of Information Science and Technology, Nanjing, 210044, China.
| | - S Ponmani
- Mother Terasa College of Agriculture, Tamil Nadu Agricultural University, Pudukkottai, 622 201, TN, India; Electrodics and Electrocatalysis Division, CSIR-Central Electrochemical Research Institute, Karaikudi, 630003, TN, India.
| | - G K Sharma
- ICAR-Indian Institute of Soil and Water Conservation, Research Centre, Dadwara Kota, 324002, Rajasthan, India.
| | - P Sangavi
- Mother Terasa College of Agriculture, Tamil Nadu Agricultural University, Pudukkottai, 622 201, TN, India; Electrodics and Electrocatalysis Division, CSIR-Central Electrochemical Research Institute, Karaikudi, 630003, TN, India.
| | - A K Chaturvedi
- Land and Water Management Research Group, Centre for Water Resources Development and Management, Kozhikode, Kerala, India.
| | - A Singh
- Department of Sustainable Energy Engineering, Indian Institute of Technology Kanpur, Kanpur, 208016, India.
| | - S K Malyan
- Department of Environmental Studies, Dyal Singh Evening College, University of Delhi, New Delhi, 110003, India.
| | - A Kumar
- Central Muga Eri Research and Training Institute, Central Silk Board, Jorhat, 785000, India; Central Sericultural Research and Training Institute, Central Silk Board, Mysore, Karnataka, 570008, India.
| | - S A Khan
- Division of Environmental Science, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
| | - Aftab A Shabnam
- Central Muga Eri Research and Training Institute, Central Silk Board, Jorhat, 785000, India.
| | - D K Jigyasu
- Central Muga Eri Research and Training Institute, Central Silk Board, Jorhat, 785000, India.
| | - A Gull
- Central Sericultural Research and Training Institute, Central Silk Board, Mysore, Karnataka, 570008, India.
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13
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Kim JH, Shin JH, Park B, Cho CH, Huh YS, Choi CH, Park JP. Harnessing protein sensing ability of electrochemical biosensors via a controlled peptide receptor-electrode interface. J Nanobiotechnology 2023; 21:100. [PMID: 36944950 PMCID: PMC10029155 DOI: 10.1186/s12951-023-01843-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Accepted: 03/06/2023] [Indexed: 03/23/2023] Open
Abstract
BACKGROUND Cathepsin B, a cysteine protease, is considered a potential biomarker for early diagnosis of cancer and inflammatory bowel diseases. Therefore, more feasible and effective diagnostic method may be beneficial for monitoring of cancer or related diseases. RESULTS A phage-display library was biopanned against biotinylated cathepsin B to identify a high-affinity peptide with the sequence WDMWPSMDWKAE. The identified peptide-displaying phage clones and phage-free synthetic peptides were characterized using enzyme-linked immunosorbent assays (ELISAs) and electrochemical analyses (impedance spectroscopy, cyclic voltammetry, and square wave voltammetry). Feasibilities of phage-on-a-sensor, peptide-on-a-sensor, and peptide-on-a-AuNPs/MXene sensor were evaluated. The limit of detection and binding affinity values of the peptide-on-a-AuNPs/MXene sensor interface were two to four times lower than those of the two other sensors, indicating that the peptide-on-a-AuNPs/MXene sensor is more specific for cathepsin B (good recovery (86-102%) and %RSD (< 11%) with clinical samples, and can distinguish different stages of Crohn's disease. Furthermore, the concentration of cathepsin B measured by our sensor showed a good correlation with those estimated by the commercially available ELISA kit. CONCLUSION In summary, screening and rational design of high-affinity peptides specific to cathepsin B for developing peptide-based electrochemical biosensors is reported for the first time. This study could promote the development of alternative antibody-free detection methods for clinical assays to test inflammatory bowel disease and other diseases.
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Affiliation(s)
- Ji Hong Kim
- Basic Research Laboratory, Department of Food Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea
| | - Jae Hwan Shin
- Basic Research Laboratory, Department of Food Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea
| | - Bumjun Park
- NanoBio High-Tech Materials Research Center, Department of Biological Sciences and Bioengineering, Inha University, 100 Inha-Ro, Incheon, 22212, Republic of Korea
| | - Chae Hwan Cho
- Basic Research Laboratory, Department of Food Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea
| | - Yun Suk Huh
- NanoBio High-Tech Materials Research Center, Department of Biological Sciences and Bioengineering, Inha University, 100 Inha-Ro, Incheon, 22212, Republic of Korea
| | - Chang-Hyung Choi
- School of Chemical Engineering, Yeungnam University, 280 Daehak-ro, Gyeongsan, Gyeongbuk, 38541, Republic of Korea
| | - Jong Pil Park
- Basic Research Laboratory, Department of Food Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea.
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Davenport B, Hallam SJ. Emerging enzyme surface display systems for waste resource recovery. Environ Microbiol 2023; 25:241-249. [PMID: 36369958 PMCID: PMC10100002 DOI: 10.1111/1462-2920.16284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Accepted: 11/09/2022] [Indexed: 11/15/2022]
Abstract
The current century marks an inflection point for human progress, as the developed world increasingly comes to recognize that the ecological and socioeconomic impacts of resource extraction must be balanced with more sustainable modes of growth that are less reliant on non-renewable sources of energy and materials. This has opened a window of opportunity for cross-sector development of biotechnologies that harness the metabolic problem-solving power of microbial communities. In this context, recovery has emerged as an organizing principal to create value from industrial and municipal waste streams, and the search is on for new enzymes and platforms that can be used for waste resource recovery at scale. Enzyme surface display on cells or functionalized materials has emerged as a promising platform for waste valorization. Typically, surface display involves the use of substrate binding or catalytic domains of interest translationally fused with extracellular membrane proteins in a microbial chassis. Novel display systems with improved performance features include S-layer display with increased protein density, spore display with increased resistance to harsh conditions, and intracellular inclusions including DNA-free cells or nanoparticles with improved social licence for in situ applications. Combining these display systems with advances in bioprinting, electrospinning and high-throughput functional screening have potential to transform outmoded extractive paradigms into 'trans-metabolic" processes for remediation and waste resource recovery within an emerging circular bioeconomy.
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Affiliation(s)
- Beth Davenport
- Department of Microbiology & Immunology, University of British Columbia, Vancouver, British Columbia, Canada
| | - Steven J Hallam
- Department of Microbiology & Immunology, University of British Columbia, Vancouver, British Columbia, Canada
- Graduate Program in Bioinformatics, University of British Columbia, Vancouver, British Columbia, Canada
- Genome Science and Technology Program, University of British Columbia, Vancouver, British Columbia, Canada
- Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada
- Bradshaw Research Institute for Minerals and Mining, University of British Columbia, Vancouver, British Columbia, Canada
- ECOSCOPE Training Program, University of British Columbia, Vancouver, British Columbia, Canada
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15
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Singh A, Kumar V, Singh S, Ray M. Electrochemical detection of copper(II) in environmental samples using Penicillium sp. IITISM_ANK1 based biosensor. CHEMOSPHERE 2023; 313:137294. [PMID: 36427580 DOI: 10.1016/j.chemosphere.2022.137294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Revised: 10/27/2022] [Accepted: 11/17/2022] [Indexed: 06/16/2023]
Abstract
Detection of toxic metals at the lowest of their concentration in a variety of matrices has become a necessity due to the widespread and persistent nature of the contaminant. In this context, biosensors provide a viable alternative to the large sophisticated instrumentation. This study focuses on the development of a cost-effective fungal biomass-based biosensor that can be used for the detection of Cu(II). The fungal cells were pretreated with formaldehyde and studied with various spectroscopic studies. It was observed that the carbonyl groups along with amine groups played role in the sorption of copper ions which were stripped in an electrolytic solution to quantify the metal. Herein the dried fungal biomass was chemically activated and used to prepare a novel graphite paste electrode by repurposing a plastic pipette tip. The factors affecting the detection signal were optimized in further study. The electrochemical characterization revealed that the prepared bio-electrode was capable of detecting Cu in the range of 1 × 10-7 M to 2 × 10-5 M.
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Affiliation(s)
- Ankur Singh
- Laboratory of Applied Microbiology, Department of Environmental Science & Engineering, Indian Institute of Technology (Indian School of Mines), Dhanbad, Jharkhand, 826 004, India
| | - Vipin Kumar
- Laboratory of Applied Microbiology, Department of Environmental Science & Engineering, Indian Institute of Technology (Indian School of Mines), Dhanbad, Jharkhand, 826 004, India.
| | - Shalini Singh
- Laboratory of Applied Microbiology, Department of Environmental Science & Engineering, Indian Institute of Technology (Indian School of Mines), Dhanbad, Jharkhand, 826 004, India
| | - Madhurya Ray
- Laboratory of Applied Microbiology, Department of Environmental Science & Engineering, Indian Institute of Technology (Indian School of Mines), Dhanbad, Jharkhand, 826 004, India
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Studying Peptide-Metal Ion Complex Structures by Solution-State NMR. Int J Mol Sci 2022; 23:ijms232415957. [PMID: 36555599 PMCID: PMC9782655 DOI: 10.3390/ijms232415957] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 12/06/2022] [Accepted: 12/13/2022] [Indexed: 12/23/2022] Open
Abstract
Metal chelation can provide structural stability and form reactive centers in metalloproteins. Approximately one third of known protein structures are metalloproteins, and metal binding, or the lack thereof, is often implicated in disease, making it necessary to be able to study these systems in detail. Peptide-metal complexes are both present in nature and can provide a means to focus on the binding region of a protein and control experimental variables to a high degree. Structural studies of peptide complexes with metal ions by nuclear magnetic resonance (NMR) were surveyed for all the essential metal complexes and many non-essential metal complexes. The various methods used to study each metal ion are presented together with examples of recent research. Many of these metal systems have been individually reviewed and this current overview of NMR studies of metallopeptide complexes aims to provide a basis for inspiration from structural studies and methodology applied in the field.
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17
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Liu Z, Xu Z, Xu L, Buyong F, Chay TC, Li Z, Cai Y, Hu B, Zhu Y, Wang X. Modified biochar: synthesis and mechanism for removal of environmental heavy metals. CARBON RESEARCH 2022; 1:8. [DOI: doi.org/10.1007/s44246-022-00007-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Accepted: 05/09/2022] [Indexed: 06/25/2023]
Abstract
AbstractWith social progress and industrial development, heavy metal pollution in water and soils environment is becoming more serious. Although biochar is a low-cost and environmentally friendly adsorbent for heavy metal ions, its adsorption and immobilization efficiency still need to be improved. As an upgraded version of biochar, modified biochar has attracted extensive attention in the scientific community. This review summarized the recent research progress on the treatment methods on heavy metal pollutants in water and soils using biochar. The features and advantages of biochar modification techniques such as physical modification, chemical modification, biological modification and other categories of biochar were discussed. The mechanism of removing heavy metals from soil and water by modified biochar was summarized. It was found that biochar had better performance after modification, which provided higher surface areas and more functional groups, and had enough binding sites to combine heavy metal ions. Biochar is a very promising candidate for removing heavy metals in environment. Furthermore, some high valent metal ions could be reduced to low valent metals, such as Cr(VI) reduction to Cr(III), and form precipitates on biochar by in-situ sorption-reduction-precipitation strategy. However, it is still the direction of efforts to develop high-efficiency modified biochar with low-cost, high sorption capacity, high photocatalytic performance, environmentally friendly and no secondary pollution in future.
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18
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Pradhan B, Bhuyan PP, Nayak R, Patra S, Behera C, Ki JS, Ragusa A, Lukatkin AS, Jena M. Microalgal Phycoremediation: A Glimpse into a Sustainable Environment. TOXICS 2022; 10:toxics10090525. [PMID: 36136490 PMCID: PMC9502476 DOI: 10.3390/toxics10090525] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Revised: 09/01/2022] [Accepted: 09/02/2022] [Indexed: 05/28/2023]
Abstract
Microalgae are continually exposed to heavy metals and metalloids (HMMs), which stifles their development and reproduction due to the resulting physiological and metabolic abnormalities, leading to lower crop productivity. They must thus change their way of adapting to survive in such a hostile environment without sacrificing their healthy growth, development, reproductive capacity, or survival. The mode of adaptation involves a complex relationship of signalling cascades that govern gene expression at the transcriptional and post-transcriptional levels, which consequently produces altered but adapted biochemical and physiochemical parameters. Algae have been reported to have altered their physicochemical and molecular perspectives as a result of exposure to a variety of HMMs. Hence, in this review, we focused on how microalgae alter their physicochemical and molecular characteristics as a tolerance mechanism in response to HMM-induced stress. Furthermore, physiological and biotechnological methods can be used to enhance extracellular absorption and clean up. The introduction of foreign DNA into microalgae cells and the genetic alteration of genes can boost the bio-accumulation and remediation capabilities of microalgae. In this regard, microalgae represent an excellent model organism and could be used for HMM removal in the near future.
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Affiliation(s)
- Biswajita Pradhan
- Algal Biotechnology and Molecular Systematic Laboratory, Post Graduate Department of Botany, Berhampur University, Bhanja Bihar, Berhampur 760007, Odisha, India
- Department of Biotechnology, Sangmyung University, Seoul 03016, Korea
| | - Prajna Paramita Bhuyan
- Department of Botany, Maharaja Sriram Chandra Bhanja Deo University, Baripada 757003, Odisha, India
| | - Rabindra Nayak
- Algal Biotechnology and Molecular Systematic Laboratory, Post Graduate Department of Botany, Berhampur University, Bhanja Bihar, Berhampur 760007, Odisha, India
| | - Srimanta Patra
- Cancer and Cell Death Laboratory, Department of Life Science, National Institute of Technology Rourkela, Rourkela 769001, Odisha, India
| | - Chhandashree Behera
- Algal Biotechnology and Molecular Systematic Laboratory, Post Graduate Department of Botany, Berhampur University, Bhanja Bihar, Berhampur 760007, Odisha, India
| | - Jang-Seu Ki
- Department of Biotechnology, Sangmyung University, Seoul 03016, Korea
| | - Andrea Ragusa
- CNR-Nanotec, Institute of Nanotechnology, Via Monteroni, 73100 Lecce, Italy
- Department of Biological and Environmental Sciences and Technologies, Campus Ecotekne, University of Salento, Via Monteroni, 73100 Lecce, Italy
| | - Alexander S. Lukatkin
- Department of General Biology and Ecology, N.P. Ogarev Mordovia State University, Bolshevistskaja Str., 430005 Saransk, Russia
| | - Mrutyunjay Jena
- Algal Biotechnology and Molecular Systematic Laboratory, Post Graduate Department of Botany, Berhampur University, Bhanja Bihar, Berhampur 760007, Odisha, India
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Zhou R, Dong S, Feng Y, Cui Q, Xuan J. Development of highly efficient whole-cell catalysts of cis-epoxysuccinic acid hydrolase by surface display. BIORESOUR BIOPROCESS 2022; 9:92. [PMID: 38647583 PMCID: PMC10991663 DOI: 10.1186/s40643-022-00584-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 08/16/2022] [Indexed: 11/10/2022] Open
Abstract
Bacterial cis-epoxysuccinic acid hydrolases (CESHs) are intracellular enzymes used in the industrial production of enantiomeric tartaric acids. The enzymes are mainly used as whole-cell catalysts because of the low stability of purified CESHs. However, the low cell permeability is the major drawback of the whole-cell catalyst. To overcome this problem, we developed whole-cell catalysts using various surface display systems for CESH[L] which produces L(+)-tartaric acid. Considering that the display efficiency depends on both the carrier and the passenger, we screened five different anchoring motifs in Escherichia coli. Display efficiencies are significantly different among these five systems and the InaPbN-CESH[L] system has the highest whole-cell enzymatic activity. Conditions for InaPbN-CESH[L] production were optimized and a maturation step was discovered which can increase the whole-cell activity several times. After optimization, the total activity of the InaPbN-CESH[L] surface display system is higher than the total lysate activity of an intracellular CESH[L] overexpression system, indicating a very high CESH[L] display level. Furthermore, the whole-cell InaPbN-CESH[L] biocatalyst exhibited good storage stability at 4 °C and considerable reusability. Thereby, an efficient whole-cell CESH[L] biocatalyst was developed in this study, which solves the cell permeability problem and provides a valuable system for industrial L(+)-tartaric acid production.
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Affiliation(s)
- Rui Zhou
- Department of Bioscience and Bioengineering, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Beijing, 100083, China
| | - Sheng Dong
- CAS Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao, 266101, China
- Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao, 266101, China
- Shandong Engineering Laboratory of Single Cell Oil, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao, 266101, China
- Shandong Energy Institute, 189 Songling Road, Qingdao, 266101, Shandong, China
| | - Yingang Feng
- CAS Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao, 266101, China
- Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao, 266101, China
- Shandong Engineering Laboratory of Single Cell Oil, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao, 266101, China
- Shandong Energy Institute, 189 Songling Road, Qingdao, 266101, Shandong, China
| | - Qiu Cui
- CAS Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao, 266101, China
- Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao, 266101, China
- Shandong Engineering Laboratory of Single Cell Oil, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao, 266101, China
- Shandong Energy Institute, 189 Songling Road, Qingdao, 266101, Shandong, China
| | - Jinsong Xuan
- Department of Bioscience and Bioengineering, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Beijing, 100083, China.
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Ranjbar S, Malcata FX. Is Genetic Engineering a Route to Enhance Microalgae-Mediated Bioremediation of Heavy Metal-Containing Effluents? Molecules 2022; 27:1473. [PMID: 35268582 PMCID: PMC8911655 DOI: 10.3390/molecules27051473] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Revised: 02/17/2022] [Accepted: 02/18/2022] [Indexed: 12/19/2022] Open
Abstract
Contamination of the biosphere by heavy metals has been rising, due to accelerated anthropogenic activities, and is nowadays, a matter of serious global concern. Removal of such inorganic pollutants from aquatic environments via biological processes has earned great popularity, for its cost-effectiveness and high efficiency, compared to conventional physicochemical methods. Among candidate organisms, microalgae offer several competitive advantages; phycoremediation has even been claimed as the next generation of wastewater treatment technologies. Furthermore, integration of microalgae-mediated wastewater treatment and bioenergy production adds favorably to the economic feasibility of the former process-with energy security coming along with environmental sustainability. However, poor biomass productivity under abiotic stress conditions has hindered the large-scale deployment of microalgae. Recent advances encompassing molecular tools for genome editing, together with the advent of multiomics technologies and computational approaches, have permitted the design of tailor-made microalgal cell factories, which encompass multiple beneficial traits, while circumventing those associated with the bioaccumulation of unfavorable chemicals. Previous studies unfolded several routes through which genetic engineering-mediated improvements appear feasible (encompassing sequestration/uptake capacity and specificity for heavy metals); they can be categorized as metal transportation, chelation, or biotransformation, with regulation of metal- and oxidative stress response, as well as cell surface engineering playing a crucial role therein. This review covers the state-of-the-art metal stress mitigation mechanisms prevalent in microalgae, and discusses putative and tested metabolic engineering approaches, aimed at further improvement of those biological processes. Finally, current research gaps and future prospects arising from use of transgenic microalgae for heavy metal phycoremediation are reviewed.
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Affiliation(s)
- Saeed Ranjbar
- LEPABE—Laboratory for Process Engineering, Environment, Biotechnology and Energy, Rua Dr. Roberto Frias, s/n, 4200-465 Porto, Portugal;
- Department of Chemical Engineering, University of Porto, Rua Dr. Roberto Frias, s/n, 4200-465 Porto, Portugal
| | - Francisco Xavier Malcata
- LEPABE—Laboratory for Process Engineering, Environment, Biotechnology and Energy, Rua Dr. Roberto Frias, s/n, 4200-465 Porto, Portugal;
- Department of Chemical Engineering, University of Porto, Rua Dr. Roberto Frias, s/n, 4200-465 Porto, Portugal
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Hwan Shin J, Rana Gul A, Seop Hyun M, Choi CH, Jung Park T, Pil Park J. Electrochemical detection of caspase-3 based on a chemically modified M13 phage virus. Bioelectrochemistry 2022; 145:108090. [DOI: 10.1016/j.bioelechem.2022.108090] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 02/11/2022] [Accepted: 02/22/2022] [Indexed: 12/31/2022]
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Decolorization of Textile Dye by Spore Surface Displayed Small Laccase for the Enhanced Thermal Stability and Robust Repeated Reaction. BIOTECHNOL BIOPROC E 2022; 27:930-937. [PMID: 36593775 PMCID: PMC9798364 DOI: 10.1007/s12257-022-0317-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 10/28/2022] [Accepted: 10/31/2022] [Indexed: 12/30/2022]
Abstract
In this study, we tried to decolorize synthetic dyes using small laccase (SLAC) from Streptomyces coelicolor, which is resistant to pH, temperature change, and traditional inhibitors for the actual industrial applications using spore surface display system. We inserted SLAC-His6 tag at the C-terminal of CotE anchoring motif. The proper surface expression of CotE-SLAC fusion protein on the surface of Bacillus subtilis spore was verified with flow cytometry using FITC labeled anti-His6 tag antibody. After 6 h of reaction, more than 90% of Indigo carmine was decomposed using recombinant SLAC displaying Bacillus spore, whereas less than 10% of Indigo carmine was decomposed with wild type spore. Over 70% of laccase activity was retained with recombinant SLAC displaying spore, which was heat-treated for 3 h at 90°C. For eight rounds of repeated decomposition of Indigo carmine, no significant decrease of enzymatic activity was observed. This showed the robust characteristics of spore display format for repeated and harsh condition reactions.
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Hui CY, Guo Y, Liu L, Yi J. Recent advances in bacterial biosensing and bioremediation of cadmium pollution: a mini-review. World J Microbiol Biotechnol 2021; 38:9. [PMID: 34850291 DOI: 10.1007/s11274-021-03198-w] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 11/23/2021] [Indexed: 12/27/2022]
Abstract
Cadmium (Cd) pollution has become a global environmental issue because Cd gets easily accumulated and translocated in the food chain, threatening human health. Considering the detrimental effects and non-biodegradability of environmental Cd, this is an urgent issue that needs to be addressed through the development of robust, cost-effective, and eco-friendly green routes for monitoring and remediating toxic levels of Cd. This article attempts to review various bacterial approaches toward biosensing and bioremediation of Cd in the environment. This review focuses on the recent development of bacterial cell-based biosensors for the detection of bioavailable Cd and the bioremediation of toxic Cd by natural or genetically-engineered bacteria. The present limitations and future perspectives of these available bacterial approaches are outlined. New trends for integrating synthetic biology and metabolic engineering into the design of bacterial biosensors and bioadsorbers are additionally highlighted.
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Affiliation(s)
- Chang-Ye Hui
- Department of Pathology & Toxicology, Shenzhen Prevention and Treatment Center for Occupational Diseases, Shenzhen, China.
| | - Yan Guo
- National Key Clinical Specialty of Occupational Diseases, Shenzhen Prevention and Treatment Center for Occupational Diseases, Shenzhen, China
| | - Lisa Liu
- Lewis Katz School of Medicine, Temple University, Pennsylvania, USA
| | - Juan Yi
- Department of Pathology & Toxicology, Shenzhen Prevention and Treatment Center for Occupational Diseases, Shenzhen, China
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24
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Ahmed B, Shahid M, Syed A, Rajput VD, Elgorban AM, Minkina T, Bahkali AH, Lee J. Drought Tolerant Enterobacter sp./ Leclercia adecarboxylata Secretes Indole-3-acetic Acid and Other Biomolecules and Enhances the Biological Attributes of Vigna radiata (L.) R. Wilczek in Water Deficit Conditions. BIOLOGY 2021; 10:1149. [PMID: 34827142 PMCID: PMC8614786 DOI: 10.3390/biology10111149] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 10/31/2021] [Accepted: 11/01/2021] [Indexed: 12/17/2022]
Abstract
Drought or water stress is a limiting factor that hampers the growth and yield of edible crops. Drought-tolerant plant growth-promoting rhizobacteria (PGPR) can mitigate water stress in crops by synthesizing multiple bioactive molecules. Here, strain PAB19 recovered from rhizospheric soil was biochemically and molecularly characterized, and identified as Enterobacter sp./Leclercia adecarboxylata (MT672579.1). Strain PAB19 tolerated an exceptionally high level of drought (18% PEG-6000) and produced indole-3-acetic acid (176.2 ± 5.6 µg mL-1), ACC deaminase (56.6 ± 5.0 µg mL-1), salicylic acid (42.5 ± 3.0 µg mL-1), 2,3-dihydroxy benzoic acid (DHBA) (44.3 ± 2.3 µg mL-1), exopolysaccharide (204 ± 14.7 µg mL-1), alginate (82.3 ± 6.5 µg mL-1), and solubilized tricalcium phosphate (98.3 ± 3.5 µg mL-1), in the presence of 15% polyethylene glycol. Furthermore, strain PAB19 alleviated water stress and significantly (p ≤ 0.05) improved the overall growth and biochemical attributes of Vigna radiata (L.) R. Wilczek. For instance, at 2% PEG stress, PAB19 inoculation maximally increased germination, root dry biomass, leaf carotenoid content, nodule biomass, leghaemoglobin (LHb) content, leaf water potential (ΨL), membrane stability index (MSI), and pod yield by 10%, 7%, 14%, 38%, 9%, 17%, 11%, and 11%, respectively, over un-inoculated plants. Additionally, PAB19 inoculation reduced two stressor metabolites, proline and malondialdehyde, and antioxidant enzymes (POD, SOD, CAT, and GR) levels in V. radiata foliage in water stress conditions. Following inoculation of strain PAB19 with 15% PEG in soil, stomatal conductance, intercellular CO2 concentration, transpiration rate, water vapor deficit, intrinsic water use efficiency, and photosynthetic rate were significantly improved by 12%, 8%, 42%, 10%, 9% and 16%, respectively. Rhizospheric CFU counts of PAB19 were 2.33 and 2.11 log CFU g-1 after treatment with 15% PEG solution and 8.46 and 6.67 log CFU g-1 for untreated controls at 40 and 80 DAS, respectively. Conclusively, this study suggests the potential of Enterobacter sp./L. adecarboxylata PAB19 to alleviate water stress by improving the biological and biochemical features and of V. radiata under water-deficit conditions.
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Affiliation(s)
- Bilal Ahmed
- School of Chemical Engineering, Yeungnam University, Gyeongsan 38541, Korea
| | - Mohammad Shahid
- Department of Agricultural Microbiology, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh 202002, India;
| | - Asad Syed
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia; (A.S.); (A.M.E.); (A.H.B.)
| | - Vishnu D. Rajput
- Academy of Biology and Biotechnology, Southern Federal University, 344090 Rostov-on-Don, Russia; (V.D.R.); (T.M.)
| | - Abdallah M. Elgorban
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia; (A.S.); (A.M.E.); (A.H.B.)
| | - Tatiana Minkina
- Academy of Biology and Biotechnology, Southern Federal University, 344090 Rostov-on-Don, Russia; (V.D.R.); (T.M.)
| | - Ali H. Bahkali
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia; (A.S.); (A.M.E.); (A.H.B.)
| | - Jintae Lee
- School of Chemical Engineering, Yeungnam University, Gyeongsan 38541, Korea
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25
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Danouche M, El Ghachtouli N, El Arroussi H. Phycoremediation mechanisms of heavy metals using living green microalgae: physicochemical and molecular approaches for enhancing selectivity and removal capacity. Heliyon 2021; 7:e07609. [PMID: 34355100 PMCID: PMC8322293 DOI: 10.1016/j.heliyon.2021.e07609] [Citation(s) in RCA: 60] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 07/02/2021] [Accepted: 07/14/2021] [Indexed: 12/15/2022] Open
Abstract
Heavy metal (HM) contamination of water bodies is a serious global environmental problem. Because they are not biodegradable, they can accumulate in food chains, causing various signs of toxicity to exposed organisms, including humans. Due to its effectiveness, low cost, and ecological aspect, phycoremediation, or the use of microalgae's ecological functions in the treatment of HMs contaminated wastewater, is one of the most recommended processes. This study aims to examine in depth the mechanisms involved in the phycoremediation of HMs by microalgae, it also provides an overview of the prospects for improving the productivity, selectivity, and cost-effectiveness of this bioprocess through physicochemical and genetic engineering applications. Firstly, this review proposes a detailed examination of the biosorption interactions between cell wall functional groups and HMs, and their complexation with extracellular polymeric substances released by microalgae in the extracellular environment under stress conditions. Subsequently, the metal transporters involved in the intracellular bioaccumulation of HMs as well as the main intracellular mechanisms including compartmentalization in cell organelles, enzymatic biotransformation, or photoreduction of HMs were also extensively reviewed. In the last section, future perspectives of physicochemical and genetic approaches that could be used to improve the phytoremediation process in terms of removal efficiency, selectivity for a targeted metal, or reduction of treatment time and cost are discussed, which paves the way for large-scale application of phytoremediation processes.
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Affiliation(s)
- Mohammed Danouche
- Green Biotechnology Center, Moroccan Foundation for Advanced Science, Innovation and Research (MAScIR), Rabat, Morocco
- Microbial Biotechnology and Bioactive Molecules Laboratory, Sciences and Technologies Faculty, Sidi Mohamed Ben Abdellah University, Fez, Morocco
| | - Naïma El Ghachtouli
- Microbial Biotechnology and Bioactive Molecules Laboratory, Sciences and Technologies Faculty, Sidi Mohamed Ben Abdellah University, Fez, Morocco
| | - Hicham El Arroussi
- Green Biotechnology Center, Moroccan Foundation for Advanced Science, Innovation and Research (MAScIR), Rabat, Morocco
- AgroBioScience (AgBS), Mohammed VI Polytechnic University (UM6P), Benguerir, Morocco
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