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For: Rastogi G, Stetler LD, Peyton BM, Sani RK. Molecular analysis of prokaryotic diversity in the deep subsurface of the former Homestake gold mine, South Dakota, USA. J Microbiol 2009;47:371-84. [PMID: 19763410 DOI: 10.1007/s12275-008-0249-1] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2008] [Accepted: 04/10/2009] [Indexed: 11/29/2022]
Number Cited by Other Article(s)
1
Grossman AS, Lei L, Botting JM, Liu J, Nahar N, Souza JGS, Liu J, McLean JS, He X, Bor B. Saccharibacteria deploy two distinct Type IV pili, driving episymbiosis, host competition, and twitching motility. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.11.25.624915. [PMID: 39651235 PMCID: PMC11623550 DOI: 10.1101/2024.11.25.624915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 12/11/2024]
2
Higo M, Kang DJ, Isobe K. Root-associated microbial community and diversity in napiergrass across radiocesium-contaminated lands after the Fukushima-Daiichi nuclear disaster in Japan. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024;342:123051. [PMID: 38043771 DOI: 10.1016/j.envpol.2023.123051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Revised: 11/18/2023] [Accepted: 11/25/2023] [Indexed: 12/05/2023]
3
Momper L, Casar CP, Osburn MR. A metagenomic view of novel microbial and metabolic diversity found within the deep terrestrial biosphere at DeMMO: A microbial observatory in South Dakota, USA. Environ Microbiol 2023;25:3719-3737. [PMID: 37964716 DOI: 10.1111/1462-2920.16543] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Accepted: 10/31/2023] [Indexed: 11/16/2023]
4
Tagg AS, Sperlea T, Labrenz M, Harrison JP, Ojeda JJ, Sapp M. Year-Long Microbial Succession on Microplastics in Wastewater: Chaotic Dynamics Outweigh Preferential Growth. Microorganisms 2022;10:microorganisms10091775. [PMID: 36144377 PMCID: PMC9506493 DOI: 10.3390/microorganisms10091775] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Revised: 08/29/2022] [Accepted: 08/30/2022] [Indexed: 11/16/2022]  Open
5
Li X, Yang M, Mu T, Miao D, Liu J, Xing J. Composition and key-influencing factors of bacterial communities active in sulfur cycling of soda lake sediments. Arch Microbiol 2022;204:317. [PMID: 35567694 DOI: 10.1007/s00203-022-02925-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Revised: 01/20/2022] [Accepted: 04/15/2022] [Indexed: 11/28/2022]
6
Bioleaching of metals from waste printed circuit boards using bacterial isolates native to abandoned gold mine. Biometals 2021;34:1043-1058. [PMID: 34213670 DOI: 10.1007/s10534-021-00326-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Accepted: 06/21/2021] [Indexed: 10/21/2022]
7
Metagenomics and Culture Dependent Insights into the Distribution of Firmicutes across Two Different Sample Types Located in the Black Hills Region of South Dakota, USA. Microorganisms 2021;9:microorganisms9010113. [PMID: 33418927 PMCID: PMC7825136 DOI: 10.3390/microorganisms9010113] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2020] [Revised: 12/28/2020] [Accepted: 12/30/2020] [Indexed: 11/17/2022]  Open
8
Govil T, Sharma W, Chauhan NK, Kumar S, Salem DR, Sani RK. "MINES" method for genomic DNA extraction from deep biosphere biofilms. J Microbiol Methods 2019;167:105730. [PMID: 31676422 DOI: 10.1016/j.mimet.2019.105730] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2019] [Revised: 09/23/2019] [Accepted: 09/27/2019] [Indexed: 01/24/2023]
9
Bibra M, Kumar S, Wang J, Bhalla A, Salem DR, Sani RK. Single pot bioconversion of prairie cordgrass into biohydrogen by thermophiles. BIORESOURCE TECHNOLOGY 2018;266:232-241. [PMID: 29982043 DOI: 10.1016/j.biortech.2018.06.046] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2018] [Revised: 06/13/2018] [Accepted: 06/14/2018] [Indexed: 06/08/2023]
10
Kou S, Vincent G, Gonzalez E, Pitre FE, Labrecque M, Brereton NJB. The Response of a 16S Ribosomal RNA Gene Fragment Amplified Community to Lead, Zinc, and Copper Pollution in a Shanghai Field Trial. Front Microbiol 2018;9:366. [PMID: 29545788 PMCID: PMC5838024 DOI: 10.3389/fmicb.2018.00366] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2017] [Accepted: 02/16/2018] [Indexed: 11/27/2022]  Open
11
Theodorakopoulos N, Février L, Barakat M, Ortet P, Christen R, Piette L, Levchuk S, Beaugelin-Seiller K, Sergeant C, Berthomieu C, Chapon V. Soil prokaryotic communities in Chernobyl waste disposal trench T22 are modulated by organic matter and radionuclide contamination. FEMS Microbiol Ecol 2017. [DOI: 10.1093/femsec/fix079] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
12
Ntougias S, Polkowska Ż, Nikolaki S, Dionyssopoulou E, Stathopoulou P, Doudoumis V, Ruman M, Kozak K, Namieśnik J, Tsiamis G. Bacterial Community Structures in Freshwater Polar Environments of Svalbard. Microbes Environ 2016;31:401-409. [PMID: 27725345 PMCID: PMC5158112 DOI: 10.1264/jsme2.me16074] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
13
Molecular Approach to Study Soil Bacterial Diversity. SOIL BIOLOGY 2015. [DOI: 10.1007/978-3-319-13401-7_18] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
14
Blanco Y, Rivas LA, García-Moyano A, Aguirre J, Cruz-Gil P, Palacín A, van Heerden E, Parro V. Deciphering the prokaryotic community and metabolisms in South African deep-mine biofilms through antibody microarrays and graph theory. PLoS One 2014;9:e114180. [PMID: 25531640 PMCID: PMC4273990 DOI: 10.1371/journal.pone.0114180] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2014] [Accepted: 11/05/2014] [Indexed: 11/18/2022]  Open
15
Osburn MR, LaRowe DE, Momper LM, Amend JP. Chemolithotrophy in the continental deep subsurface: Sanford Underground Research Facility (SURF), USA. Front Microbiol 2014;5:610. [PMID: 25429287 PMCID: PMC4228859 DOI: 10.3389/fmicb.2014.00610] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2014] [Accepted: 10/27/2014] [Indexed: 11/13/2022]  Open
16
Rodrigues VD, Torres TT, Ottoboni LMM. Bacterial diversity assessment in soil of an active Brazilian copper mine using high-throughput sequencing of 16S rDNA amplicons. Antonie van Leeuwenhoek 2014;106:879-90. [PMID: 25129578 DOI: 10.1007/s10482-014-0257-6] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2014] [Accepted: 08/08/2014] [Indexed: 11/24/2022]
17
Lanzén A, Simachew A, Gessesse A, Chmolowska D, Jonassen I, Øvreås L. Surprising prokaryotic and eukaryotic diversity, community structure and biogeography of Ethiopian soda lakes. PLoS One 2013;8:e72577. [PMID: 24023625 PMCID: PMC3758324 DOI: 10.1371/journal.pone.0072577] [Citation(s) in RCA: 66] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2013] [Accepted: 07/11/2013] [Indexed: 11/18/2022]  Open
18
Wouters K, Moors H, Boven P, Leys N. Evidence and characteristics of a diverse and metabolically active microbial community in deep subsurface clay borehole water. FEMS Microbiol Ecol 2013;86:458-73. [DOI: 10.1111/1574-6941.12171] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2013] [Revised: 06/14/2013] [Accepted: 06/20/2013] [Indexed: 11/30/2022]  Open
19
Lavalleur HJ, Colwell FS. Microbial characterization of basalt formation waters targeted for geological carbon sequestration. FEMS Microbiol Ecol 2013;85:62-73. [DOI: 10.1111/1574-6941.12098] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2012] [Revised: 01/31/2013] [Accepted: 02/13/2013] [Indexed: 11/29/2022]  Open
20
Ragon M, Van Driessche AES, García-Ruíz JM, Moreira D, López-García P. Microbial diversity in the deep-subsurface hydrothermal aquifer feeding the giant gypsum crystal-bearing Naica Mine, Mexico. Front Microbiol 2013;4:37. [PMID: 23508882 PMCID: PMC3589807 DOI: 10.3389/fmicb.2013.00037] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2012] [Accepted: 02/12/2013] [Indexed: 11/13/2022]  Open
21
Rastogi G, Gurram RN, Bhalla A, Gonzalez R, Bischoff KM, Hughes SR, Kumar S, Sani RK. Presence of glucose, xylose, and glycerol fermenting bacteria in the deep biosphere of the former Homestake gold mine, South Dakota. Front Microbiol 2013;4:18. [PMID: 23919089 PMCID: PMC3573265 DOI: 10.3389/fmicb.2013.00018] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2012] [Accepted: 01/27/2013] [Indexed: 11/24/2022]  Open
22
The prokaryotic community of a historically mining-impacted tropical stream sediment is as diverse as that from a pristine stream sediment. Extremophiles 2013;17:301-9. [PMID: 23389654 DOI: 10.1007/s00792-013-0517-9] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2012] [Accepted: 01/10/2013] [Indexed: 10/27/2022]
23
Dunfield PF, Tamas I, Lee KC, Morgan XC, McDonald IR, Stott MB. Electing a candidate: a speculative history of the bacterial phylum OP10. Environ Microbiol 2012;14:3069-80. [DOI: 10.1111/j.1462-2920.2012.02742.x] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
24
Zhao J, Wu X, Nie C, Wu T, Dai W, Liu H, Yang R. Analysis of unculturable bacterial communities in tea orchard soils based on nested PCR-DGGE. World J Microbiol Biotechnol 2012;28:1967-79. [DOI: 10.1007/s11274-011-0999-5] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2011] [Accepted: 12/30/2011] [Indexed: 10/14/2022]
25
Culture-independent methods for studying environmental microorganisms: methods, application, and perspective. Appl Microbiol Biotechnol 2011;93:993-1003. [DOI: 10.1007/s00253-011-3800-7] [Citation(s) in RCA: 131] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2011] [Revised: 11/23/2011] [Accepted: 11/27/2011] [Indexed: 01/29/2023]
26
Rastogi G, Bhalla A, Adhikari A, Bischoff KM, Hughes SR, Christopher LP, Sani RK. Characterization of thermostable cellulases produced by Bacillus and Geobacillus strains. BIORESOURCE TECHNOLOGY 2010;101:8798-806. [PMID: 20599378 DOI: 10.1016/j.biortech.2010.06.001] [Citation(s) in RCA: 150] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2010] [Revised: 05/15/2010] [Accepted: 06/01/2010] [Indexed: 05/05/2023]
27
Rastogi G, Osman S, Kukkadapu R, Engelhard M, Vaishampayan PA, Andersen GL, Sani RK. Microbial and mineralogical characterizations of soils collected from the deep biosphere of the former Homestake gold mine, South Dakota. MICROBIAL ECOLOGY 2010;60:539-550. [PMID: 20386898 DOI: 10.1007/s00248-010-9657-y] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2010] [Accepted: 03/13/2010] [Indexed: 05/29/2023]
28
Waddell EJ, Elliott TJ, Sani RK, Vahrenkamp JM, Roggenthen WM, Anderson CM, Bang SS. Phylogenetic evidence of noteworthy microflora from the subsurface of the former Homestake gold mine, Lead, South Dakota. ENVIRONMENTAL TECHNOLOGY 2010;31:979-91. [PMID: 20662386 PMCID: PMC3565620 DOI: 10.1080/09593331003789511] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
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