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For: Scheinert P, Krausse R, Ullmann U, Söller R, Krupp G. Molecular differentiation of bacteria by PCR amplification of the 16S–23S rRNA spacer. J Microbiol Methods 1996. [DOI: 10.1016/0167-7012(96)00901-3] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Number Cited by Other Article(s)
1
Alnakip MEA, Rhouma NR, Abd-Elfatah EN, Quintela-Baluja M, Böhme K, Fernández-No I, Bayoumi MA, Abdelhafez MM, Taboada-Rodríguez A, Calo-Mata P, Barros-Velázquez J. Discrimination of major and minor streptococci incriminated in bovine mastitis by MALDI-TOF MS fingerprinting and 16S rRNA gene sequencing. Res Vet Sci 2020;132:426-438. [PMID: 32777539 DOI: 10.1016/j.rvsc.2020.07.027] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Revised: 06/13/2020] [Accepted: 07/30/2020] [Indexed: 02/05/2023]
2
Quantification of viable bacterial starter cultures of Virgibacillus sp. and Tetragenococcus halophilus in fish sauce fermentation by real-time quantitative PCR. Food Microbiol 2016;57:54-62. [DOI: 10.1016/j.fm.2016.01.004] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2015] [Revised: 12/21/2015] [Accepted: 01/15/2016] [Indexed: 11/20/2022]
3
Crespo BG, Wallhead PJ, Logares R, Pedrós-Alió C. Probing the Rare Biosphere of the North-West Mediterranean Sea: An Experiment with High Sequencing Effort. PLoS One 2016;11:e0159195. [PMID: 27442429 PMCID: PMC4956085 DOI: 10.1371/journal.pone.0159195] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2016] [Accepted: 06/28/2016] [Indexed: 11/18/2022]  Open
4
Doonan J, Denman S, Gertler C, Pachebat JA, Golyshin PN, McDonald JE. The intergenic transcribed spacer region 1 as a molecular marker for identification and discrimination of Enterobacteriaceae associated with acute oak decline. J Appl Microbiol 2014;118:193-201. [PMID: 25355271 DOI: 10.1111/jam.12677] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2014] [Revised: 10/21/2014] [Accepted: 10/21/2014] [Indexed: 11/30/2022]
5
Wings S, Müller H, Berg G, Lamshöft M, Leistner E. A study of the bacterial community in the root system of the maytansine containing plant Putterlickia verrucosa. PHYTOCHEMISTRY 2013;91:158-64. [PMID: 22795602 DOI: 10.1016/j.phytochem.2012.06.016] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2012] [Revised: 05/07/2012] [Accepted: 06/18/2012] [Indexed: 05/16/2023]
6
Piterina AV, Bartlett J, Pembroke TJ. Evaluation of the removal of indicator bacteria from domestic sludge processed by Autothermal Thermophilic Aerobic Digestion (ATAD). INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2010;7:3422-41. [PMID: 20948933 PMCID: PMC2954554 DOI: 10.3390/ijerph7093422] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/17/2010] [Revised: 08/27/2010] [Accepted: 08/31/2010] [Indexed: 11/21/2022]
7
D'Elia TV, Cooper CR, Johnston CG. Source tracking of Escherichia coli by 16S-23S intergenic spacer region denaturing gradient gel electrophoresis (DGGE) of the rrnB ribosomal operon. Can J Microbiol 2008;53:1174-84. [PMID: 18026210 DOI: 10.1139/w07-083] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
8
Holmfeldt K, Middelboe M, Nybroe O, Riemann L. Large variabilities in host strain susceptibility and phage host range govern interactions between lytic marine phages and their Flavobacterium hosts. Appl Environ Microbiol 2007;73:6730-9. [PMID: 17766444 PMCID: PMC2074958 DOI: 10.1128/aem.01399-07] [Citation(s) in RCA: 146] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
9
Panangala VS, van Santen VL, Shoemaker CA, Klesius PH. Analysis of 16S-23S intergenic spacer regions of the rRNA operons in Edwardsiella ictaluri and Edwardsiella tarda isolates from fish. J Appl Microbiol 2005;99:657-69. [PMID: 16108808 DOI: 10.1111/j.1365-2672.2005.02626.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
10
Yasuda M, Shiaris MP. Differentiation of bacterial strains by thermal gradient gel electrophoresis using non-GC-clamped PCR primers for the 16S-23S rDNA intergenic spacer region. FEMS Microbiol Lett 2005;243:235-42. [PMID: 15668024 DOI: 10.1016/j.femsle.2004.12.011] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2004] [Revised: 12/06/2004] [Accepted: 12/09/2004] [Indexed: 10/26/2022]  Open
11
łaganowska M, Kaznowski A. Restriction Fragment Length Polymorphism of 16S–23S rDNA Intergenic Spacer of Aeromonas spp. Syst Appl Microbiol 2004;27:549-57. [PMID: 15490556 DOI: 10.1078/0723202041748226] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
12
Peplies J, Glöckner FO, Amann R, Ludwig W. Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bacterioplankton. Syst Appl Microbiol 2004;27:573-80. [PMID: 15490559 DOI: 10.1078/0723202041748172] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
13
Broda DM, Musgrave DR, Bell RG. Molecular differentiation of clostridia associated with "blown pack" spoilage of vacuum-packed meats using internal transcribed spacer polymorphism analysis. Int J Food Microbiol 2003;84:71-7. [PMID: 12781956 DOI: 10.1016/s0168-1605(02)00396-3] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
14
Hofman-Bang J, Zheng D, Westermann P, Ahring BK, Raskin L. Molecular ecology of anaerobic reactor systems. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2003;81:151-203. [PMID: 12747563 DOI: 10.1007/3-540-45839-5_5] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
15
Stamm LV, Bergen HL, Walker RL. Molecular typing of papillomatous digital dermatitis-associated Treponema isolates based on analysis of 16S-23S ribosomal DNA intergenic spacer regions. J Clin Microbiol 2002;40:3463-9. [PMID: 12202594 PMCID: PMC130723 DOI: 10.1128/jcm.40.9.3463-3469.2002] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
16
Parekh NR, Bardgett RD. Chapter 2 The characterisation of microbial communities in environmental samples. RADIOACTIVITY IN THE ENVIRONMENT 2002. [DOI: 10.1016/s1569-4860(02)80031-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
17
Ranjard L, Brothier E, Nazaret S. Sequencing bands of ribosomal intergenic spacer analysis fingerprints for characterization and microscale distribution of soil bacterium populations responding to mercury spiking. Appl Environ Microbiol 2000;66:5334-9. [PMID: 11097911 PMCID: PMC92465 DOI: 10.1128/aem.66.12.5334-5339.2000] [Citation(s) in RCA: 71] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
18
Broda DM, Musgrave DR, Bell RG. Use of restriction fragment length polymorphism analysis to differentiate strains of psychrophilic and psychrotropic clostridia associated with blown pack' spoilage of vacuum-packed meats. J Appl Microbiol 2000;88:107-16. [PMID: 10735249 DOI: 10.1046/j.1365-2672.2000.00925.x] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
19
Fisher MM, Triplett EW. Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl Environ Microbiol 1999;65:4630-6. [PMID: 10508099 PMCID: PMC91617 DOI: 10.1128/aem.65.10.4630-4636.1999] [Citation(s) in RCA: 456] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
20
Schwieger F, Tebbe CC. A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl Environ Microbiol 1998;64:4870-6. [PMID: 9835576 PMCID: PMC90936 DOI: 10.1128/aem.64.12.4870-4876.1998] [Citation(s) in RCA: 355] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
21
Fox KF, Fox A, Nagpal M, Steinberg P, Heroux K. Identification of Brucella by ribosomal-spacer-region PCR and differentiation of Brucella canis from other Brucella spp. pathogenic for humans by carbohydrate profiles. J Clin Microbiol 1998;36:3217-22. [PMID: 9774568 PMCID: PMC105304 DOI: 10.1128/jcm.36.11.3217-3222.1998] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
22
Nakao H, Popovic T. Development of a rapid ribotyping method for Corynebacterium diphtheriae by using PCR single-strand conformation polymorphism: comparison with standard ribotyping. J Microbiol Methods 1998. [DOI: 10.1016/s0167-7012(97)00104-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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