Biological denitrification in marine aquaculture systems: A multiple electron donor microcosm study

Start-up of solid-phase denitrification process for treatment of nitrate-rich water in recirculating mariculture system: Carbon source selection and nitrate removal mechanism

Efficient nitrate removal from recirculating mariculture system (RMS) water is of significance since high concentration of nitrate would cause chronic health effects on aquatic organisms and eutrophication. Solid-phase denitrification (SPD) is a safer and more sustainable approach than conventional heterotrophic denitrification by dosing liquid carbon sources. Thus, its application for treating nitrate-rich RMS water was investigated in this study. Poly 3-hydroxybutyrate-co-3-hydroxyvalerate (PHBV) was identified with the best nitrate removal among four kinds of carbon sources. PHBV-filled reactors started with mariculture, municipal and mixing sludges (at the ratio of 1:1) and fed with 200 mg L-1 nitrate-rich RMS water all achieved over 81% nitrate removals with a HRT of 4 days. The dissolved organic carbon concentrations of the reactors were in the range of 3-9 mg L-1. Arcobacter, Halomonas, and Psedomonas were dominant genera responsible for nitrate removal in different reactors. Metagenomic analyses indicate that both denitrification and assimilatory nitrate reduction (ANR) are the main contributors to nitrate removals. Metagenomic results illustrated nirB/D cooperated with nasA may perform ANR pathway, which transformed nitrate to ammonia for biosynthesis. These results indicate that SPD could be a safer alternative for treating nitrate-rich RMS water, and provide new insights into nitrogen metabolism pathways in SPD process.

Elemental sulfur-driven autotrophic denitrification process for effective removal of nitrate in mariculture wastewater: Performance, kinetics and microbial community

To date, there is a lack of systematic investigation on the elemental sulfur-driven autotrophic denitrification (SDAD) process for removing nitrate (NO3--N) from mariculture wastewater deficient in organic carbon sources. Therefore, a packed-bed reactor was established and continuously operated for 230 days to investigate the operation performance, kinetic characteristics and microbial community of SDAD biofilm process. Results indicate that the NO3--N removal efficiencies and rates varied with the operational conditions including HRT (1-4 h), influent concentrations of NO3--N (25-100 mg L-1) and DO (0.2-7.0 mg L-1), and temperature (10oC-30 °C), in the ranges of 51.4%-98.6% and 0.054-0.546 g L-1 d-1, respectively. Limestone could partially neutralize the produced acidity. Small portions of NO3--N were converted to nitrite (<4.5%) and ammonia (<2.8%) in the reactor. Operational conditions also influenced the production of acidity, nitrite and ammonia as well as sulfate. Shortening HRT and increasing influent NO3--N concentration turned the optimal fitting model depicting the NO3--N removal along the reactor from half-order to zero-order. Furthermore, the NO3--N removal was accelerated by a higher temperature and influent NO3--N concentration and a lower HRT and influent DO concentration. Microbial richness, evenness and diversity gradually decreased during the autotrophic denitrifier enrichment cultivation and the reactor start-up and operation. Sulfurimonas constituted the predominate genus and the primary functional bacteria in the reactor. This study highlights the SDAD as a promising way to control the coastal eutrophication associated with mariculture wastewater discharge.

Sustainable technology: potential of biomass (Bambusa tuldoides) for biological denitrification of wastewater generated in shrimp farming

Wastewater from shrimp farming is rich in organic material, solids, and nutrients, which cause a series of environmental problems when released into the environment. Currently, for the removal of nitrogen compounds from wastewater, among the most studied methods is biological denitrification. The objective of this study was to evaluate the operational parameters for the development of a more sustainable technology for the removal of nitrogen compounds from shrimp farm wastewater, using Bambusa tuldoides (a species of bamboo) as a source of carbon and a material conducive to the development of selected denitrifying bacteria. To optimize the process, biological denitrification assays were performed varying the following parameters: bamboo length (cm), pH, temperature, and stoichiometric proportions of C and N. The operational stability of the process with the reuse of the bamboo biomass was also evaluated. Cronobacter sakazakii and Bacillus cereus were identified as denitrifying microorganisms present in reactor with bamboo biomass. The best operational conditions observed were pH 6 to 7 and temperature 30 to 35 °C, and the addition of an external carbon source was not necessary for the denitrification process to occur efficiently. Under these conditions, biological denitrification occurred with an average efficiency above 90% based on the removal of the nitrogen contaminants evaluated (NO₃-N and NO₂-N). Regarding operational stability, 8 cycles were performed using the same source of carbon without reducing the efficiency of the process.

Comparative investigation on heterotrophic denitrification driven by different biodegradable polymers for nitrate removal in mariculture wastewater: Organic carbon release, denitrification performance, and microbial community

Heterotrophic denitrification is widely studied to purify freshwater wastewater, but its application to seawater wastewater is rarely reported. In this study, two types of agricultural wastes and two types of synthetic polymers were selected as solid carbon sources in denitrification process to explore their effects on the purification capacity of low-C/N marine recirculating aquaculture wastewater (NO₃ ^--N 30 mg/L, salinity 32‰). The surface properties of reed straw (RS), corn cob (CC), polycaprolactone (PCL) and poly3-hydroxybutyrate-hydroxypropionate (PHBV) were evaluated by Brunauer-Emmett-Teller, Scanning electron microscope and Fourier-transform infrared spectroscopy. Short-chain fatty acids, dissolved organic carbon (DOC), and chemical oxygen demand (COD) equivalents were used to analyze the carbon release capacity. Results showed that agricultural waste had higher carbon release capacity than PCL and PHBV. The cumulative DOC and COD of agricultural waste were 0.56-12.65 and 1.15-18.75 mg/g, respectively, while those for synthetic polymers were 0.07-1.473 and 0.045-1.425 mg/g, respectively. The removal efficiency of nitrate nitrogen (NO₃ ^--N) was CC 70.80%, PCL 53.64%, RS 42.51%, and PHBV 41.35%. Microbial community analysis showed that Proteobacteria and Firmicutes were the most abundant phyla in agricultural wastes and biodegradable natural or synthetic polymers. Quantitative real-time PCR indicated the conversion from nitrate to nitrogen was achieved in all four carbon source systems, and all six genes had the highest copy number in CC. The contents of medium nitrate reductase, nitrite reductase and nitrous oxide reductase genes in agricultural wastes were higher than those in synthetic polymers. In summary, CC is an ideal carbon source for denitrification technology to purify low C/N recirculating mariculture wastewater.

Impact of sulfamethoxazole and organic supplementation on mixotrophic denitrification process: Nitrate removal efficiency and the response of functional microbiota

Recirculating aquaculture systems (RAS) effluent is characterized by low COD to total inorganic nitrogen ratio (C/N), excessive nitrate, and the presence of traces of antibiotics. Hence, it urgently needs to be treated before recycling or discharging. In this study, four denitrification bioreactors at increasing C/N ratios (0, 0.7, 2, and 5) were started up to treat mariculture wastewater under the sulfamethoxazole (SMX) stress, during which the bioreactors performance and the shift of mixotrophic microbial communities were explored. The result showed that during the SMX exposure, organic supplementation enhanced nitrate and thiosulfate removal, and eliminated nitrite accumulation. The denitrification rate was accelerated by increasing C/N from 0 to 2, while it declined at C/N of 5. The decline was ascribed to which SMX reduced the relative abundance of denitrifiers, but improved the capability of dissimilatory nitrogen reduction to ammonia (DNRA) and sulfide production. The direct evidence was the relative abundance of sulfidogenic populations, such as Desulfuromusa, Desulfurocapsa, and Desulfobacter increased under the SMX stress. Moreover, high SMX (1.5 mg L^-1) caused the obvious accumulation of ammonia at C/N of 5 due to the high concentration of sulfide (3.54 ± 1.08 mM) and the enhanced DNRA process. This study concluded that the mixotrophic denitrification process with the C/N of 0.7 presented the best performance in nitrate and sulfur removal and indicated the maximum resistance to SMX.

Denitrification performance of sulfur-based autotrophic denitrification and biomass‑sulfur-based mixotrophic denitrification in solid-phase denitrifying reactors using novel composite filters

Both the elemental sulfur-based autotrophic denitrification (ESAD) and the biomass‑sulfur-based mixotrophic (simultaneous autotrophic and heterotrophic) denitrification processes (BSMD) are efficient methods for removing nitrate from wastewater. However, a comparative analysis of the denitrification capacity of the BSMD and ESAD in the packed bed reactors is still lacking. In this paper, corncob powder was selected as the biomass source to prepare biomass‑sulfur-based composite filter (BSCF) for the BSMD process. The denitrification performances of the three identical lab-scale bioreactors packed with varying elemental sulfur-based composite filters (ESCFs) were compared under varying loading conditions, and the optimal ESCF of the ESAD system was 2:1 by weight ratio of sulfur powder to shell powder. In pilot-scale experiments, the results showed that BSCF could decrease the sulfate productivity and gave better denitrification performance than the ESCF with the optimal nitrate removal rate (NRR) of 504 ± 12.3 mg NO₃^--N·L^-1·d^-1. In addition, the two-stage flushing strategy (for the removal of aged sludge) can effectively improve the denitrification capacity, while the denitrification will be inhibited when the influent dissolved oxygen concentration was higher than 4.5 mg L^-1. Moreover, the heterotrophs and autotrophs were abundant in the reactors. Over time, the abundance of autotrophs increased while that of heterotrophs decreased. Overall, BSCF could be a promising and economic technology to improve the effluent quality.

The response of sediment microbial communities to temporal and site-specific variations of pollution in interconnected aquaculture pond and ditch systems

Sediment microbial communities play critical roles in the health of fish and the biogeochemical cycling of elements in aquaculture ecosystems. However, the response of microbial communities to temporal and spatial variations in interconnected aquaculture pond and ditch systems remains unclear. In this study, 61 sediment bacterial samples were collected over one year from 11 sites (including five ponds and six ditches) in a 30-year-old fish aquaculture farm. The 16S rRNA approach was used to determine the relative abundances of microbial communities in the sediment samples. The relationships among nutrients, heavy metals, and abundant microorganisms were analyzed. Our results showed that Proteobacteria, Bacteroides and Chloroflexi were the predominant phyla in the sediments of aquaculture pond, with average abundances of 36.33%, 18.60%, and 14.58%, respectively. The microbial diversity in aquaculture sediments was negatively correlated (P < 0.05) with the concentrations of total nitrogen and total phosphorus in sediments, indicating that the microbial diversity is highly associated with the remediation of nutrients in sediments. The sediment samples with high similarities were discovered by the t-distributed stochastic neighbor embedding (t-SNE) method. The site-specific correlations between specific microorganisms and heavy metals were explored. The network analysis revealed that the microbial diversities in aquaculture ponds were more stable than that in aquaculture ditches. The network analysis also illustrated that the microbial genera with low relative abundances may become key groups of microbial communities in sediment ecosystems. Our work deepens the understanding of the relationships between microbial communities and the spatiotemporal characteristics of surface water and sediments in aquaculture farms.

Mixotrophic denitrification processes based on composite filler for low carbon/nitrogen wastewater treatment

Removal of nitrogen from wastewater with low carbon/nitrogen ratio was treated by using a denitrification packed bed reactor. Composite fillers with both autotrophic and heterotrophic denitrification capacity were prepared by mixing melted polycaprolactone and elemental sulfur at various alkalinity ratios (heterotrophic to autotrophic ratios of 1:2, 1:1, 3:2, and 2:1). Optimum denitrification was achieved at a ratio of 2:1. The diversity of the microbial community in the biofilm on the surface of the composite fillers showed that the increase of the elemental sulfur in the composite fillers has led to the increase of the microbial abundance. Furthermore, biofilm composition developed from a single dominant species to multiple species, and genes related to sulfur metabolism increased while those related to denitrification decreased slightly.

Integrating Microbial Protein Production and Harvest Systems into Pilot-Scale Recirculating Aquaculture Systems for Sustainable Resource Recovery: Linking Nitrogen Recovery to Microbial Communities

In aquaculture, it is important to raise the nitrogen recovery efficiency (NRE) to improve sustainability. To achieve this, recovery of microbial protein (RMP), instead of nitrification/denitrification in conventional wastewater treatment, is a promising approach whose microbiological mechanisms must be characterized. Here, periodic RMP was conducted in an in situ biofloc-based aquaculture system (IBAS) and a separating assimilation reactor-based recirculating aquaculture system (SRAS). Kinetic analysis indicated that a microbial biomass level of 3 g L^-1 was optimal for inorganic N removal, and excess biomass was harvested to improve the NRE. Unlike the IBAS, the SRAS eliminated the fluctuation in water quality caused by the RMP. Periodic RMP significantly increased the NRE to 44-57% by promoting the filamentous bacterium Herpetosiphon and suppressing anaerobic denitrifiers. Aerobic chemoheterotrophy was the main microbial metabolic process for energy. After RMP, nitrate reductase-encoded functional genes (napA and narG) significantly decreased, while nitrite reductase-encoded functional genes, especially nirK, significantly increased. Co-occurrence networks analysis indicated that the cooperation and competition among organic matter degraders, filamentous bacteria, nitrifiers, and denitrifiers determined the microbial protein yield. These results provide fundamental insights into the influence of the RMP on microbial communities and functions, which is important for realizing sustainable aquaculture.

Diversified metabolism makes novel Thauera strain highly competitive in low carbon wastewater treatment

Thauera, as one of the core members of wastewater biological treatment systems, plays an important role in the process of nitrogen and phosphorus removal from low-carbon source sewage. However, there is a lack of systematic understanding of Thauera's metabolic pathway and genomics. Here we report on the newly isolated Thauera sp. RT1901, which is capable of denitrification using variety carbon sources including aromatic compounds. By comparing the denitrification processes under the conditions of insufficient, adequate and surplus carbon sources, it was found that strain RT1901 could simultaneously use soluble microbial products (SMP) and extracellular polymeric substances (EPS) as electron donors for denitrification. Strain RT1901 was also found to be a denitrifying phosphate accumulating bacterium, able to use nitrate, nitrite, or oxygen as electron acceptors during poly-β-hydroxybutyrate (PHB) catabolism. The annotated genome was used to reconstruct the complete nitrogen and phosphorus metabolism pathways of RT1901. In the process of denitrifying phosphorus accumulation, glycolysis was the only pathway for glycogen metabolism, and the glyoxylic acid cycle replaced the tricarboxylic acid cycle (TCA) to supplement the reduced energy. In addition, the abundance of conventional phosphorus accumulating bacteria decreased significantly and the removal rates of total nitrogen (TN) and chemical oxygen demand (COD) increased after the addition of RT1901 in the low carbon/nitrogen (C/N) ratio of anaerobic aerobic anoxic-sequencing batch reactor (AOA-SBR). This research indicated that the diverse metabolic capabilities of Thauera made it more competitive than other bacteria in the wastewater treatment system.

A latest review on the application of microcosm model in environmental research

Microcosms are used experimentally to simulate ecosystems. This technology has received increasing attention and is widely used for environmental research. This review briefly introduces the origin and development of microcosm theory, summarizes classification and applications of microcosms across decades, and describes the advantages and limitations of microcosm technology in comparison with other methods. Finally, trends in the development of microcosm models are discussed.

Thermophilic bacteria combined with alkyl polyglucose pretreated mariculture solid wastes using as denitrification carbon source for marine recirculating aquaculture wastewater treatment

In marine recirculating aquaculture systems (RAS), efficient nitrogen removal is challenging due to the high NO₃^--N concentration, low organic matters content, and high salinity. In this study, mariculture solid wastes (MSW) acidogenic liquid pretreated by thermophilic bacteria (TB) combined with alkyl polyglucose (APG) was first used as carbon source for denitrification to remove NO₃^--N. TB + APG pretreatment could accelerate the hydrolysis of MSW, and the highest volatile fatty acids (VFAs) yield (40.3%) was obtained with TB + 0.2 g/g VSS APG pretreatment. MSW acidogenic liquid pretreated by TB + 0.2 g/g VSS APG was a reliable carbon source for denitrification, and the optimum COD/NO₃^--N ratio (C/N) was 8 with no residue of NO_x^--N. VFAs were more effectively utilized by denitrifiers than carbohydrate and protein. The high denitrification potential (P_DN) and denitrification rate (V_DN) indicated the higher denitrification ability at C/N of 8 using MSW acidogenic liquid as carbon source. The outcomes of this work could provide useful information for promoting technological innovation in marine RAS wastewater treatment.

Wood and sulfur-based cyclic denitrification filters for treatment of saline wastewaters

This study investigated the performance and microbiome of cyclic denitrification filters (CDFs) for wood and sulfur heterotrophic-autotrophic denitrification (WSHAD) of saline wastewater. Wood-sulfur CDFs integrated into two pilot-scale marine recirculating aquaculture systems achieved high denitrification rates (103 ± 8.5 g N/(m³·d)). The combined use of pine wood and sulfur resulted in lower SO₄^2- accumulation compared with prior saline wastewater denitrification studies with sulfur alone. Although fish tank water quality parameters, including ammonia, nitrite, nitrate and sulfide, were below the inhibitory levels for marine fish production, lower survival rates of Poecilia sphenops were observed compared with prior studies. Heterotrophic denitrification was the dominant removal mechanism during the early operational stages, while sulfur autotrophic denitrification increased as readily biodegradable organic carbon released from wood chips decreased over time. 16S rRNA-based analysis of the CDF microbiome revealed that Sulfurimonas, Thioalbus, Defluviimonas, and Ornatilinea as notable genera that contributed to denitrification performance.

Production, characterization, and evaluation of two types of slow-releasing carbon source tablets for in-situ heterotrophic nitrate denitrification in aquifers

Slow-releasing carbon source tablets were manufactured for an in-situ biological denitrification system. The average zero-order nitrate degradation rates seen, from highest to lowest, were in microcosms to which lactate, fumarate, propionate, and formate had been added. Fumarate was approximately 80% cheaper than lactate, and consequently was determined to be the most optimal slow-releasing carbon source in tablet form. The slow-releasing precipitating tablet (SRPT) and slow-releasing floating tablet (SRFT) were manufactured with hydroxypropyl methylcellulose (HPMC) as the agent of release control, microcrystalline cellulose pH 101 (MCC 101) as the binder, #8 sand as the precipitation agent, and calcium carbonate and citric acid as floating agents. Fourier transform infrared spectroscopy and powder X-ray diffraction indicated that the crystal arrangement in the SRPTs and SRFTs was maintained and ordered in a manner similar to raw excipients. SRFTs floated in water within 30 min and remained so for 5 d due to the buoyancy of carbon dioxide. The carbon source release rate was proportional to the quantity of HPMC added. The longevities of SRPT with 300 mg of HPMC and SRFT with 400 mg of HPMC were 25.4 d and 37.3 d, respectively. This study observed that SRPT and SRFT were manufactured effectively and are suitable for in-situ slow-releasing biological systems.

Metagenomic evidence reveals denitrifying community diversity rather than abundance drives nitrate removal in stormwater biofilters amended with different organic and inorganic electron donors

Various sole and mixed electron donors were tested to promote the denitrification rate and nitrate removal efficiency in biofilter systems with high phosphate and ammonia removal efficiency (92.6% and 95.3% respectively). Compared to sole electron donors, complex organic carbon (bits of wood and straw) substantially improved the denitrification rate and nitrate removal efficiency (from 6.3%-18.5% to35.4%) by shifting the denitrifying microbial community composition, even though the relative abundance of functional genes mediating denitrification decreased. The mixed electron donor combining complex organic carbon with sulfur, iron and CH₄ further promoted nitrate removal efficiency by 37.2%. The significantly higher abundance and diversity of bacteria mediating organic carbon decomposition in the treatments with complex organic carbon indicated the continuous production of organic carbon with small molecular weights, which provided sustainable and effective electron donor for denitrification. However, sole sulfur or iron did not effectively promote the denitrification rate and nitrogen removal efficiency, even though the related microbial community had been formed.

Denitrification performance evaluation and kinetics analysis with mariculture solid wastes (MSW) derived carbon source in marine recirculating aquaculture systems (RAS)

Biological denitrification using mariculture solid wastes (MSW) carbon source is a promising solution for removing nitrate (NO₃^--N) and disposing MSW in marine recirculating aquaculture systems (RAS). To enhance denitrification performance, heating (HT), rhamnolipid (RL), alkali (AL), thermophilic bacteria (TB) pre-treated MSW acidogenic fermentation effluents were prepared as carbon sources. Profiles of soluble organics in four types of fermentation effluents were first evaluated. The highest volatile fatty acids (VFAs) yield (52.1%) was obtained from TB treated MSW after acidification. RL and TB treated MSW acidogenic fermentation effluents showed high NO₃^--N removal efficiency (NRE) (around 97%). Acidogenic fermentation effluent from TB treated MSW presented a high biodegradability, with the minimum effluent chemical oxygen demand (COD) amount (35 mg/L). Denitrification kinetics parameters were also analyzed; high fraction (74.5%) of the most readily biodegradable organics (S_S) demonstrated that TB treated MSW acidogenic fermentation effluent is a high-quality carbon source for enhancing denitrification.

A sulfur-based cyclic denitrification filter for marine recirculating aquaculture systems

Nitrogen removal from saline wastewater is challenging due to adverse effects of salinity on biological processes. A novel sulfur-autotrophic cyclic denitrification filter (CDF) was tested for marine recirculating aquaculture systems (RAS) under varying conditions. Low ammonia, nitrite and sulfide concentrations were maintained at residence times between 4 and 12 h. After introduction of Poecilia sphenops, concentrations of NH₄⁺-N, NO₂^--N, NO₃^--N were maintained below 1, 1, and 60 mg/L, respectively. Fish waste inputs to the CDF contributed to mixotrophic denitrification and low sulfate production. A mass balance showed that 7% of the feed nitrogen was assimilated by fish, 6% was removed by passive denitrification (e.g., in anoxic zones in filters), 60% in the CDF and 27% was discharged during sampling and solids removal. Daily fresh water addition was <2% of fish tank volumes. The results are promising as a low cost alternative for saline wastewater denitrification.

Heterotrophic denitrification strategy for marine recirculating aquaculture wastewater treatment using mariculture solid wastes fermentation liquid as carbon source: Optimization of COD/NO3--N ratio and hydraulic retention time

Heterotrophic denitrification using mariculture solid wastes (MSW) fermentation liquid as carbon source is an economically and environmentally sustainable strategy for NO₃^--N removal in marine recycling aquaculture systems (RAS). The optimization of COD/NO₃^--N ratio (C/N) and hydraulic retention times (HRT) with respect to MSW fermentation liquid driven denitrification for marine RAS wastewater treatment was investigated. The optimum C/N of 8 and HRT of 6 h for heterotrophic denitrification was obtained with NO₃^--N removal efficiency of 97.8% and 94.2%, respectively. Using MSW fermentation liquid as carbon source, the utilization of VFAs was more effective than that of carbohydrates and proteins, and effluent COD concentration decreased with an increment in HRT from 4 to 8 h. The results of high-throughput sequencing analysis showed microbial communities were enriched selectively in the reactors by optimizing C/N and HRT, which obviously enhanced the nitrogen removal in respect to MSW fermentation liquid driven denitrification.

Effect of potassium on nitrate removal from groundwater in agricultural waste-based heterotrophic denitrification system

Heterotrophic denitrification based on solid carbon sources has been widely investigated for nitrogen removal in recent years. In this study, the response of the heterotrophic denitrification process under different K⁺ concentrations was clarified. Additionally, the denitrification enhancement mechanism was revealed and resource utilization of agricultural waste was achieved. A series of batch tests were conducted to study the effect of different K⁺ concentrations on the denitrification performance, dissolved organic matter (DOM) dissolution and microbial community structure. Results demonstrate that the threshold of K⁺ concentration for the NO₃^--N and NO₂^--N reduction rates were 229.78 ± 25.80 and 159.10 ± 24.60 mg-K/L, respectively. Excitation-emission matrix (EEM) analysis identified the main DOM components associated with tyrosine-like, tryptophan-like and humic-like substances, as well as illustrated the evolutionary behavior and utilization of DOM. High throughput 16S rRNA gene sequencing indicates that a K⁺ concentration of 229.78 ± 25.80 mg-K/L exhibited the highest diversity of functional species associated with fermentation and denitrification. The genera Pseudomonas and Thiobacillus were the unique denitrifiers at this K⁺ concentration. The correlation of K⁺ concentration, DOM dissolution of different regions and microorganism structure were analyzed using correlation matrix and PCA, and the appropriate K⁺ concentration of different functional microorganisms survival was optimized by this analysis method.