1
|
Pilli R, Goel T, Murugan R. Unveiling Alzheimer's disease through brain age estimation using multi-kernel regression network and magnetic resonance imaging. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2025; 261:108617. [PMID: 39908635 DOI: 10.1016/j.cmpb.2025.108617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2024] [Revised: 01/21/2025] [Accepted: 01/22/2025] [Indexed: 02/07/2025]
Abstract
BACKGROUND AND OBJECTIVE Structural magnetic resonance imaging (MRI) studies have unveiled age-related anatomical changes across various brain regions. The disparity between actual age and estimated age, known as the Brain-Predicted Age Difference (Brain-PAD), serves as an indicator for predicting neurocognitive ailments or brain abnormalities resulting from diseases. This study aims to develop an accurate brain age prediction model that can assist in identifying potential neurocognitive impairments. METHODS The present study implemented a brain age prediction model using a ResNet-50 deep network and a multi-kernel extreme learning machine (MKELM) regression network, relying on MRI images. Kernel methods translate input information into higher-dimensional space by introducing nonlinearity and enabling the model to grasp complicated data patterns. A multi-kernel function combines the Gaussian and polynomial kernels and is incorporated into the brain age regression model. The model effectively utilizes the benefits of both kernel functions to estimate the ages accurately. MRI scans are segmented into gray matter (GM) and white matter (WM) maps preprocessed and extracted of significant features using the ResNet-50 deep network. Extracted features of the WM and GM datasets are fed into the MKELM regression model for brain age prediction. RESULTS The proposed age estimation framework achieved 3.06 years of mean absolute error (MAE) and 4.12 years of root mean square error (RMSE) on healthy controls (HC) WM scans, and on GM scans, 2.73 years of MAE and 3.65 years of RMSE values. To further validate the importance of Brain-PAD as a biomarker for identifying brain health conditions, an independent testing dataset of mild cognitive impairment (MCI) and Alzheimer's disease (AD) subjects age is predicted. The Brain-PAD values for AD subjects' GM images are significantly higher compared to those of HC and MCI subjects, indicating distinct brain health conditions. Furthermore, variations in GM and WM tissue were identified in AD subjects, revealing that the parahippocampus and corpus callosum were notably affected. CONCLUSION Our findings underscore the potential of Brain-PAD as a significant biomarker for assessing brain health, with implications for early detection of neurocognitive diseases. The developed framework effectively estimates brain age using MRI, contributing valuable insights into the relationship between brain structure and cognitive health.
Collapse
Affiliation(s)
- Raveendra Pilli
- Biomedical Imaging Lab, National Institute of Technology Silchar, 788010, Assam, India.
| | - Tripti Goel
- Biomedical Imaging Lab, National Institute of Technology Silchar, 788010, Assam, India
| | - R Murugan
- Biomedical Imaging Lab, National Institute of Technology Silchar, 788010, Assam, India
| |
Collapse
|
2
|
Kopetzky SJ, Li Y, Kaiser M, Butz-Ostendorf M, for the Alzheimer’s Disease Neuroimaging Initiative. Predictability of intelligence and age from structural connectomes. PLoS One 2024; 19:e0301599. [PMID: 38557681 PMCID: PMC10984540 DOI: 10.1371/journal.pone.0301599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Accepted: 03/19/2024] [Indexed: 04/04/2024] Open
Abstract
In this study, structural images of 1048 healthy subjects from the Human Connectome Project Young Adult study and 94 from ADNI-3 study were processed by an in-house tractography pipeline and analyzed together with pre-processed data of the same subjects from braingraph.org. Whole brain structural connectome features were used to build a simple correlation-based regression machine learning model to predict intelligence and age of healthy subjects. Our results showed that different forms of intelligence as well as age are predictable to a certain degree from diffusion tensor imaging detecting anatomical fiber tracts in the living human brain. Though we did not identify significant differences in the prediction capability for the investigated features depending on the imaging feature extraction method, we did find that crystallized intelligence was consistently better predictable than fluid intelligence from structural connectivity data through all datasets. Our findings suggest a practical and scalable processing and analysis framework to explore broader research topics employing brain MR imaging.
Collapse
Affiliation(s)
- Sebastian J. Kopetzky
- Labvantage—Biomax GmbH, Planegg, Germany
- School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Yong Li
- Labvantage—Biomax GmbH, Planegg, Germany
| | - Marcus Kaiser
- Precision Imaging Beacon, School of Medicine, University of Nottingham, Nottingham, United Kingdom
- Department of Functional Neurosurgery, Rui Jin Hospital, Shanghai Jiao Tong University, Shanghai, China
| | - Markus Butz-Ostendorf
- Labvantage—Biomax GmbH, Planegg, Germany
- Laboratory for Parallel Programming, Department of Computer Science, Technical University of Darmstadt, Darmstadt, Germany
| | | |
Collapse
|
3
|
Wong SB, Tsao Y, Tsai WH, Wang TS, Wu HC, Wang SS. Application of bidirectional long short-term memory network for prediction of cognitive age. Sci Rep 2023; 13:20197. [PMID: 37980387 PMCID: PMC10657465 DOI: 10.1038/s41598-023-47606-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Accepted: 11/16/2023] [Indexed: 11/20/2023] Open
Abstract
Electroencephalography (EEG) measures changes in neuronal activity and can reveal significant changes from infancy to adulthood concomitant with brain maturation, making it a potential physiological marker of brain maturation and cognition. To investigate a promising deep learning tool for EEG classification, we applied the bidirectional long short-term memory (BLSTM) algorithm to analyze EEG data from the pediatric EEG laboratory of Taipei Tzu Chi Hospital. The trained BLSTM model was 86% accurate when identifying EEGs from young children (8 months-6 years) and adolescents (12-20 years). However, there was only a modest classification accuracy (69.3%) when categorizing EEG samples into three age groups (8 months-6 years, 6-12 years, and 12-20 years). For EEG samples from patients with intellectual disability, the prediction accuracy of the trained BLSTM model was 46.4%, which was significantly lower than its accuracy for EEGs from neurotypical patients, indicating that the individual's intelligence plays a major role in the age prediction. This study confirmed that scalp EEG can reflect brain maturation and the BLSTM algorithm is a feasible deep learning tool for the identification of cognitive age. The trained model can potentially be applied to clinical services as a supportive measurement of neurodevelopmental status.
Collapse
Affiliation(s)
- Shi-Bing Wong
- Department of Pediatrics, Taipei Tzu Chi Hospital, Buddhist Tzu Chi Medical Foundation, New Taipei City, Taiwan.
- School of Medicine, Tzu Chi University, Hualien, Taiwan.
| | - Yu Tsao
- Research Center for Information Technology Innovation, Academia Sinica, Taipei, Taiwan
| | - Wen-Hsin Tsai
- Department of Pediatrics, Taipei Tzu Chi Hospital, Buddhist Tzu Chi Medical Foundation, New Taipei City, Taiwan
- School of Medicine, Tzu Chi University, Hualien, Taiwan
| | - Tzong-Shi Wang
- School of Medicine, Tzu Chi University, Hualien, Taiwan
- Department of Psychiatry, Taipei Tzu Chi Hospital, Buddhist Tzu Chi Medical Foundation, New Taipei City, Taiwan
| | - Hsin-Chi Wu
- School of Medicine, Tzu Chi University, Hualien, Taiwan
- Department of Physical Medicine and Rehabilitation, Taipei Tzu Chi Hospital, Buddhist Tzu Chi Medical Foundation, New Taipei City, Taiwan
| | - Syu-Siang Wang
- Department of Electrical Engineering, Yuan Ze University, Taoyuan, Taiwan.
| |
Collapse
|
4
|
Kang SH, Liu M, Park G, Kim SY, Lee H, Matloff W, Zhao L, Yoo H, Kim JP, Jang H, Kim HJ, Jahanshad N, Oh K, Koh SB, Na DL, Gallacher J, Gottesman RF, Seo SW, Kim H. Different effects of cardiometabolic syndrome on brain age in relation to gender and ethnicity. Alzheimers Res Ther 2023; 15:68. [PMID: 36998058 PMCID: PMC10061789 DOI: 10.1186/s13195-023-01215-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Accepted: 03/20/2023] [Indexed: 04/01/2023]
Abstract
BACKGROUND A growing body of evidence shows differences in the prevalence of cardiometabolic syndrome (CMS) and dementia based on gender and ethnicity. However, there is a paucity of information about ethnic- and gender-specific CMS effects on brain age. We investigated the different effects of CMS on brain age by gender in Korean and British cognitively unimpaired (CU) populations. We also determined whether the gender-specific difference in the effects of CMS on brain age changes depending on ethnicity. METHODS These analyses used de-identified, cross-sectional data on CU populations from Korea and United Kingdom (UK) that underwent brain MRI. After propensity score matching to balance the age and gender between the Korean and UK populations, 5759 Korean individuals (3042 males and 2717 females) and 9903 individuals from the UK (4736 males and 5167 females) were included in this study. Brain age index (BAI), calculated by the difference between the predicted brain age by the algorithm and the chronological age, was considered as main outcome and presence of CMS, including type 2 diabetes mellitus (T2DM), hypertension, obesity, and underweight was considered as a predictor. Gender (males and females) and ethnicity (Korean and UK) were considered as effect modifiers. RESULTS The presence of T2DM and hypertension was associated with a higher BAI regardless of gender and ethnicity (p < 0.001), except for hypertension in Korean males (p = 0.309). Among Koreans, there were interaction effects of gender and the presence of T2DM (p for T2DM*gender = 0.035) and hypertension (p for hypertension*gender = 0.046) on BAI in Koreans, suggesting that T2DM and hypertension are each associated with a higher BAI in females than in males. In contrast, among individuals from the UK, there were no differences in the effects of T2DM (p for T2DM*gender = 0.098) and hypertension (p for hypertension*gender = 0.203) on BAI between males and females. CONCLUSIONS Our results highlight gender and ethnic differences as important factors in mediating the effects of CMS on brain age. Furthermore, these results suggest that ethnic- and gender-specific prevention strategies may be needed to protect against accelerated brain aging.
Collapse
Affiliation(s)
- Sung Hoon Kang
- Departments of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea
- Department of Neurology, Korea University Guro Hospital, Korea University College of Medicine, Seoul, South Korea
| | - Mengting Liu
- School of Biomedical Engineering, Sun Yat-Sen University, Shenzhen, China
- Keck School of Medicine of University of Southern California, USC Steven Neuroimaging and Informatics Institute, Los Angeles, CA, 90033, USA
| | - Gilsoon Park
- Keck School of Medicine of University of Southern California, USC Steven Neuroimaging and Informatics Institute, Los Angeles, CA, 90033, USA
| | - Sharon Y Kim
- Keck School of Medicine of University of Southern California, USC Steven Neuroimaging and Informatics Institute, Los Angeles, CA, 90033, USA
| | - Hyejoo Lee
- Departments of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea
| | - William Matloff
- Keck School of Medicine of University of Southern California, USC Steven Neuroimaging and Informatics Institute, Los Angeles, CA, 90033, USA
| | - Lu Zhao
- Keck School of Medicine of University of Southern California, USC Steven Neuroimaging and Informatics Institute, Los Angeles, CA, 90033, USA
| | - Heejin Yoo
- Departments of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea
| | - Jun Pyo Kim
- Departments of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea
| | - Hyemin Jang
- Departments of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea
| | - Hee Jin Kim
- Departments of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea
| | - Neda Jahanshad
- Keck School of Medicine of University of Southern California, USC Steven Neuroimaging and Informatics Institute, Los Angeles, CA, 90033, USA
| | - Kyumgmi Oh
- Department of Neurology, Korea University Guro Hospital, Korea University College of Medicine, Seoul, South Korea
| | - Seong-Beom Koh
- Department of Neurology, Korea University Guro Hospital, Korea University College of Medicine, Seoul, South Korea
| | - Duk L Na
- Departments of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea
| | - John Gallacher
- Department of Psychiatry, University of Oxford, Oxford, UK
| | - Rebecca F Gottesman
- National Institute of Neurological Disorders and Stroke Intramural Research Program, National Institutes of Health, Bethesda, MD, USA
| | - Sang Won Seo
- Departments of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea.
- Department of Digital Health, SAIHST, Sungkyunkwan University, Seoul, South Korea.
- Department of Health Sciences and Technology, SAIHST, Sungkyunkwan University, Seoul, South Korea.
- Alzheimer's Disease Convergence Research Center, Samsung Medical Center, Seoul, South Korea.
- Department of Intelligent Precision Healthcare Convergence, Sungkyunkwan University, Suwon, South Korea.
| | - Hosung Kim
- Keck School of Medicine of University of Southern California, USC Steven Neuroimaging and Informatics Institute, Los Angeles, CA, 90033, USA
| |
Collapse
|
5
|
Lin JP, Kelly HM, Song Y, Kawaguchi R, Geschwind DH, Jacobson S, Reich DS. Transcriptomic architecture of nuclei in the marmoset CNS. Nat Commun 2022; 13:5531. [PMID: 36130924 PMCID: PMC9492672 DOI: 10.1038/s41467-022-33140-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Accepted: 09/02/2022] [Indexed: 11/11/2022] Open
Abstract
To understand the cellular composition and region-specific specialization of white matter - a disease-relevant, glia-rich tissue highly expanded in primates relative to rodents - we profiled transcriptomes of ~500,000 nuclei from 19 tissue types of the central nervous system of healthy common marmoset and mapped 87 subclusters spatially onto a 3D MRI atlas. We performed cross-species comparison, explored regulatory pathways, modeled regional intercellular communication, and surveyed cellular determinants of neurological disorders. Here, we analyze this resource and find strong spatial segregation of microglia, oligodendrocyte progenitor cells, and astrocytes. White matter glia are diverse, enriched with genes involved in stimulus-response and biomolecule modification, and predicted to interact with other resident cells more extensively than their gray matter counterparts. Conversely, gray matter glia preserve the expression of neural tube patterning genes into adulthood and share six transcription factors that restrict transcriptome complexity. A companion Callithrix jacchus Primate Cell Atlas (CjPCA) is available through https://cjpca.ninds.nih.gov .
Collapse
Affiliation(s)
- Jing-Ping Lin
- Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, USA
| | - Hannah M Kelly
- Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, USA
| | - Yeajin Song
- Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, USA
| | - Riki Kawaguchi
- Psychiatry, Semel Institute for Neuroscience and Human Behavior, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
| | - Daniel H Geschwind
- Psychiatry, Semel Institute for Neuroscience and Human Behavior, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
- Departments of Neurology and Human Genetics, University of California, Los Angeles, Los Angeles, CA, USA
| | - Steven Jacobson
- Viral Immunology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, USA
| | - Daniel S Reich
- Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, USA.
| |
Collapse
|
6
|
Zhornitsky S, Chaudhary S, Le TM, Chen Y, Zhang S, Potvin S, Chao HH, van Dyck CH, Li CSR. Cognitive dysfunction and cerebral volumetric deficits in individuals with Alzheimer's disease, alcohol use disorder, and dual diagnosis. Psychiatry Res Neuroimaging 2021; 317:111380. [PMID: 34482052 PMCID: PMC8579376 DOI: 10.1016/j.pscychresns.2021.111380] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Revised: 08/22/2021] [Accepted: 08/25/2021] [Indexed: 10/20/2022]
Abstract
Epidemiological surveys suggest that excessive drinking is associated with higher risk of Alzheimer's disease (AD). The present study utilized data from the National Alzheimer's Coordinating Center to examine cognition as well as gray/white matter and ventricular volumes among participants with AD and alcohol use disorder (AD/AUD, n = 52), AD only (n = 701), AUD only (n = 67), and controls (n = 1283). AUD diagnosis was associated with higher Clinical Dementia Rating Scale Sum of Boxes (CDR-SB) in AD than in non-AD. AD performed worse on semantic fluency and Trail Making Test A + B (TMT A + B) and showed smaller total GMV, WMV, and larger ventricular volume than non-AD. AD had smaller regional GMV in the inferior/superior parietal cortex, hippocampal formation, occipital cortex, inferior frontal gyrus, posterior cingulate cortex, and isthmus cingulate cortex than non-AD. AUD had significantly smaller somatomotor cortical GMV and showed a trend towards smaller volume in the hippocampal formation, relative to non-AUD participants. Misuse of alcohol has an additive effect on dementia severity among AD participants. Smaller hippocampal volume is a common feature of both AD and AUD. Although AD is associated with more volumetric deficits overall, AD and AUD are associated with atrophy in largely distinct brain regions.
Collapse
Affiliation(s)
- Simon Zhornitsky
- Department of Psychiatry, Yale University School of Medicine, New Haven, CT 06519, USA.
| | - Shefali Chaudhary
- Department of Psychiatry, Yale University School of Medicine, New Haven, CT 06519, USA
| | - Thang M Le
- Department of Psychiatry, Yale University School of Medicine, New Haven, CT 06519, USA
| | - Yu Chen
- Department of Psychiatry, Yale University School of Medicine, New Haven, CT 06519, USA
| | - Sheng Zhang
- Department of Psychiatry, Yale University School of Medicine, New Haven, CT 06519, USA
| | - Stéphane Potvin
- Centre de recherche de l'Institut, Universitaire en Santé Mentale de Montréal, Montreal, QC, Canada; Department of Psychiatry, Faculty of Medicine, Université de Montréal, Montréal, QC, Canada
| | - Herta H Chao
- Department of Medicine, Yale University School of Medicine, New Haven, CT 06519, USA; VA Connecticut Healthcare System, West Haven, CT 06516, USA
| | - Christopher H van Dyck
- Department of Psychiatry, Yale University School of Medicine, New Haven, CT 06519, USA; Department of Neuroscience, Yale University School of Medicine, New Haven, CT 06520, USA; Interdepartmental Neuroscience Program, Yale University School of Medicine, New Haven, CT 06520, USA
| | - Chiang-Shan R Li
- Department of Psychiatry, Yale University School of Medicine, New Haven, CT 06519, USA; Department of Neuroscience, Yale University School of Medicine, New Haven, CT 06520, USA; Interdepartmental Neuroscience Program, Yale University School of Medicine, New Haven, CT 06520, USA
| |
Collapse
|