Microbial community dynamics in a chemolithotrophic denitrification reactor inoculated with methanogenic granular sludge

Interspecies electron transfer and microbial interactions in a novel Fe(II)-mediated anammox coupled mixotrophic denitrification system

This study effectively coupled anammox and mixotrophic denitrification at a high nitrogen load rate of 6.84 g N/L/d with 40 mg/L Fe(II). Fe(II) enhanced the activity of nitrate reductase, nitrite reductase, and hydrazine dehydrogenase enzymes, facilitating accelerated ATP synthesis. Through electrochemical experiments, interspecies electron transfer processes in coupled system were explored. Fe(II) promoted flavin mononucleotide secretion, enhancing electron-donating and electron-accepting capacity by 2.8 and 1.3 times, respectively. Fe(II) triggered the enrichment of autotrophic denitrifying bacteria (Azospira and Hydrogenophaga), transitioning from single organic nutrient to mixotrophic denitrification. Meanwhile, Fe(II) increased Candidatus_Kuenenia abundance from 35.2 % to 49.0 %, establishing the competitive advantage of anammox bacteria over completed denitrifying bacteria (Comamonas). The synergistic interactions between anammox and various denitrification pathways achieved a nitrogen removal rate of 5.88 g N/L/d, with anammox contribution rate of 88.3 %. This study provides insights into broadening the application of partial denitrification /anammox and electron transfer in multi-bacterial coupling systems.

Spatial difference in nitrogen removal pathways and microbial functional diversity in an EGSB reactor during the start-up of PD/Anammox

The start-up of a relatively high nitrogen load PD/Anammox in an EGSB reactor was achieved through strategies of bioaugmentation, mass transfer enhancement, and COD/NO3--N control, with NRR of 5.2 g N/L/d. Longitudinal heterogeneity in EGSB reactor induced divergent nitrogen conversion pathways and enriched different functional microorganisms between stratified sludge. Along the elevation of the reactor, the proportion of removed nitrogen through anammox increased continuously from bottom, middle and up, which were 65.0 %, 79.8 %, and 84.1 %, respectively, consistent with the trend of ex-situ activities calculated with Gompertz model. The bottom zone played a role in mixed nitrogen conversion to provide NO2--N accumulation and nitrogen removal, with higher abundance of Thauera, Denitratisoma and Ignavibacterium. The middle part was enriched Candidatus_Kuenenia (12.51 %), and up inhibited completed denitrification, together forming the anammox dominant zone. The proposed functional zones in the EGSB reactor provided approaches for the optimisation of high-load PD/Anammox systems.

Insight into microbial functional genes' role in geochemical distribution and cycling of uranium: The evidence from covering soils of uranium tailings dam

There exists a research gap on microbial functional genes' role in U geochemical behavior and cycling in U contaminated soils, which has been poorly understood. Herein, 16S rRNA sequencing gene amplifiers and metagenome analysis were applied to probe microbial community structure and functional metabolism of different depth layers of covering soils in U tailings dam. Results showed that the soils were highly enriched with U (47.5-123.3 mg/kg) and a remarkable portion of 35-70% was associated with the labile fractions. It was found that U geochemical distribution was notably interacted with functional genes from N, S, Fe and P related microbes. Importantly, diminution in gene NirK and amplification in nrfH involving in nitrate reduction could induce microbial tolerance to U. Moreover, gene Sat in microbial sulfate reduction, NosZ and NorB in nitrate reduction, phnD, upgA and upgC in P transportation and phnI, phnK, phoA and opd in microbial organic P mineralization, were all closely linked to U geochemical distribution, species and cycling. All these findings disclose the functional genes that may control the transfer and transformation behavior of U in soil environment, which provides important and novel indications for the bio-remediation strategies towards U polluted sites.

Weak magnetic field enhances waste molasses-driven denitrification during wastewater treatment

Waste molasses, the abundant byproducts of the sugar industry, is a cost-efficient carbon source for advanced denitrification. However, the efficiency of waste molasses-driven denitrification is limited by its complex carbon content, hindering its practical application. Weak magnetic field (WMF) is reported to enhance biological nitrogen removal, but its effects on molasses-driven denitrification remains unknown. This study investigated whether the WMF can enhance waste molasses-driven nitrogen removal and explore the underlying mechanisms. It was found that WMF significantly facilitated waste molasses-driven denitrification, with total nitrogen removal efficiency increased by 1.25 times (from 77% to 96%). WMF stimulated the nitrate reductase's activity by 7-18%, and the enhancement was improved as WMF intensified. Quantitative qPCR analysis indicated that the abundances of denitrifying enzymes increased under WMF, which was consistent with the proliferation of denitrifying bacteria Denitratisoma and Devosia. This study has demonstrated that WMF is promising for enhancing complex carbon-driven denitrification processes.

Imaging biofilms using fluorescence in situ hybridization: seeing is believing

Biofilms are complex structures with an intricate relationship between the resident microorganisms, the extracellular matrix, and the surrounding environment. Interest in biofilms is growing exponentially given its ubiquity in so diverse fields such as healthcare, environmental and industry. Molecular techniques (e.g., next-generation sequencing, RNA-seq) have been used to study biofilm properties. However, these techniques disrupt the spatial structure of biofilms; therefore, they do not allow to observe the location/position of biofilm components (e.g., cells, genes, metabolites), which is particularly relevant to explore and study the interactions and functions of microorganisms. Fluorescence in situ hybridization (FISH) has been arguably the most widely used method for an in situ analysis of spatial distribution of biofilms. In this review, an overview on different FISH variants already applied on biofilm studies (e.g., CLASI-FISH, BONCAT-FISH, HiPR-FISH, seq-FISH) will be explored. In combination with confocal laser scanning microscopy, these variants emerged as a powerful approach to visualize, quantify and locate microorganisms, genes, and metabolites inside biofilms. Finally, we discuss new possible research directions for the development of robust and accurate FISH-based approaches that will allow to dig deeper into the biofilm structure and function.

Enhanced biological S0 accumulation by using signal molecules during simultaneous desulfurization and denitrification

A high rate of elemental sulfur (S⁰) accumulation from sulfide-containing wastewater has great significance in terms of resource recovery and pollution control. This experimental study used Thiobacillus denitrificans and denitrifying bacteria incorporated with signal molecules (C6 and OHHL) for simultaneous sulfide (S^2-) and nitrate (NO₃^-) removal in synthetic wastewater. Also, the effects on S⁰ accumulation due to changes in organic matter composition and bacteria proportion through signal molecules were analyzed. The 99.0% of S^2- removal and 99.3% of NO₃^- was achieved with 66% of S⁰ accumulation under the active S^2- removal group. The S⁰ accumulation, S^2- and NO₃^- removal mainly occurred in 0-48 h. The S⁰ accumulation in the active S^2- removal group was 2.0-6.3 times higher than the inactive S^2- removal groups. In addition, S⁰/SO₄^2- ratio exhibited that S⁰ conversion almost linearly increased with reaction time under the active S^2- removal group. The proportion of Thiobacillus denitrificans and H⁺ consumption showed a positive correlation with S⁰ accumulation. However, a very high or low ratio of H⁺/S⁰ is not suitable for S⁰ accumulation. The signal molecules greatly increased the concentration of protein-I and protein-II, which resulted in the high proportion of Thiobacillus denitrificans. Therefore, high S⁰ accumulation was achieved as Thiobacillus denitrificans regulated the H⁺ consumption and electron transfer rate and provided suppressed oxygen environment. This technology is cost-effective and commercially applicable for recovering S⁰ from wastewater.

Stable enhanced nitrogen removal from low COD/N municipal wastewater via partial nitrification-anammox in the traditional continuous anoxic/oxic process through bio-augmentation of partial nitrification sludge under decreasing temperatures

The application of partial nitrification-anammox (PNA) in continuous flow processes for treating low COD/N (C/N) sewage remains a critical challenge. Here, a traditional continuous anoxic/oxic (A/O) process was operated to investigate nitrogen removal from municipal wastewater by the bio-augmentation of partial nitrification sludge combined with the inoculation of biocarriers under decreasing temperatures. Stable enhanced nitrogen removal via PNA was achieved. The average total inorganic nitrogen in influent and effluent was 44.3 and 7.1 mg N/L under a low C/N ratio (3.4) and a short hydraulic retention time (8.2 h). The bio-augmentation of partial nitrification sludge enhanced the PNA process under low temperatures (16.9 ± 0.6 °C). The nitrogen removal efficiency remained stable at 83.3 ± 5.7 % as the temperature decreased from 29.1 to 16.3 °C, and the relative abundance of Ca. Brocadia in carrier biofilms increased from 2.22 % to 4.31 % and 3.27 % in two aerobic chambers after 70 days of operation.

Effects of heavy metals on bacterial community structures in two lead-zinc tailings situated in northwestern China

We evaluated the variations of bacterial communities in six heavy metal contaminated soils sampled from Yanzi Bian (YZB) and Shanping Cun (SPC) tailings located in northwestern China. Statistical analysis showed that both the heavy metals and soil chemical properties could affect the structure and diversity of the bacterial communities in the tailing soils. Cd, Cu, Zn, Cr, Pb, pH, SOM (soil organic matters), TP (total phosphorus) and TN (total nitrogen) were the main driving factors of the bacterial community variations. As a consequence, the relative abundances of certain bacterial phyla including Proteobacteria, Chloroflexi, Firmicutes, Nitrospirota and Bacteroidota were significantly increased in the tailing soils. Further, we found that the abundance increasement of these phyla were mainly contributed by certain species, such as s__unclassified_g__Thiobacillus (Proteobacteria), s__unclassified_g__Sulfobacillus (Firmicutes) and Leptospirillum ferriphilum (Nitrospirota). Thus, these species were considered to be strongly heavy metal tolerant. Together, our findings will provide a useful insight for further bioremediations of these contaminated areas.

Integrating Microbial Protein Production and Harvest Systems into Pilot-Scale Recirculating Aquaculture Systems for Sustainable Resource Recovery: Linking Nitrogen Recovery to Microbial Communities

In aquaculture, it is important to raise the nitrogen recovery efficiency (NRE) to improve sustainability. To achieve this, recovery of microbial protein (RMP), instead of nitrification/denitrification in conventional wastewater treatment, is a promising approach whose microbiological mechanisms must be characterized. Here, periodic RMP was conducted in an in situ biofloc-based aquaculture system (IBAS) and a separating assimilation reactor-based recirculating aquaculture system (SRAS). Kinetic analysis indicated that a microbial biomass level of 3 g L^-1 was optimal for inorganic N removal, and excess biomass was harvested to improve the NRE. Unlike the IBAS, the SRAS eliminated the fluctuation in water quality caused by the RMP. Periodic RMP significantly increased the NRE to 44-57% by promoting the filamentous bacterium Herpetosiphon and suppressing anaerobic denitrifiers. Aerobic chemoheterotrophy was the main microbial metabolic process for energy. After RMP, nitrate reductase-encoded functional genes (napA and narG) significantly decreased, while nitrite reductase-encoded functional genes, especially nirK, significantly increased. Co-occurrence networks analysis indicated that the cooperation and competition among organic matter degraders, filamentous bacteria, nitrifiers, and denitrifiers determined the microbial protein yield. These results provide fundamental insights into the influence of the RMP on microbial communities and functions, which is important for realizing sustainable aquaculture.

Enhancing robustness of activated sludge with Aspergillus tubingensis as a protective backbone structure under high-salinity stress

High salt seriously destroys the stable interactions among key functional species of activated sludge, which in turn limits the performance of high-salinity wastewater biological treatment. In this study, pelletized Aspergillus tubingensis (AT) was used as a protective backbone structure for activated sludge under high-salinity stress, and a superior salt-tolerant AT-based aerobic granular sludge (AT-AGS) was developed. Results showed that the COD and NH₄⁺-N removal efficiencies of salt-domesticated AT-AGS were 11.83% and 7.18% higher than those of salt-domesticated flocculent activated sludge (FAS) at 50 gNaCl/L salinity. Compared to the salt-domesticated FAS, salt-domesticated AT-AGS showed stronger biomass retention capacity (with a MLVSS concentration of 7.92 g/L) and higher metabolic activity (with a dehydrogenase activity of 48.06 mgTF/gVSS·h). AT modified the extracellular polymeric substances pattern of microbes, and the total extracellular polysaccharide content of AT-AGS (80.7 mg/gVSS) was nearly twice than that of FAS (46.3 mg/gVSS) after salt-domestication, which demonstrated that extracellular polysaccharide played a key role in keeping the system stable. The high-throughput sequencing analysis illustrated that AT contributed to maintain the microbial richness and diversity of AT-AGS in high-salt environment, and Marinobacterium (with a relative abundance of 32.04%) became the most predominant genus in salt-tolerant AT-AGS. This study provided a novel insight into enhancing the robustness of activated sludge under high-salinity stress.

Sulfur-driven autotrophic denitrification of nitric oxide for efficient nitrous oxide recovery

Nitrous oxide (N₂ O) was previously deemed as a potent greenhouse gas but is actually an untapped energy source, which can accumulate during the microbial denitrification of nitric oxide (NO). Compared with the organic electron donor required in heterotrophic denitrification, elemental sulfur (S⁰ ) is a promising electron donor alternative due to its cheap cost and low biomass yield in sulfur-driven autotrophic denitrification. However, no effort has been made to test N₂ O recovery from sulfur-driven denitrification of NO so far. Therefore, in this study, batch and continuous experiments were carried out to investigate the NO removal performance and N₂ O recovery potential via sulfur-driven NO-based denitrification under various Fe(II)EDTA-NO concentrations. Efficient energy recovery was achieved, as up to 35.5%-40.9% of NO was converted to N₂ O under various NO concentrations. N₂ O recovery from Fe(II)EDTA-NO could be enhanced by the low bioavailability of sulfur and the acid environment caused by sulfur oxidation. The NO reductase (NOR) and N₂ O reductase (N₂ OR) were inhibited distinctively at relatively low NO levels, leading to efficient N₂ O accumulation, but were suppressed irreversibly at NO level beyond 15 mM in continuous experiments. Such results indicated that the regulation of NO at a relatively low level would benefit the system stability and NO removal capacity during long-term system operation. The continuous operation of the sulfur-driven Fe(II)EDTA-NO-based denitrification reduced the overall microbial diversity but enriched several key microbial community. Thauera, Thermomonas, and Arenimonas that are able to carry out sulfur-driven autotrophic denitrification became the dominant organisms with their relative abundance increased from 25.8% to 68.3%, collectively.

Effect of hyperthermophilic pretreatment on methane and hydrogen production from garden waste under mesophilic and thermophilic conditions

Anaerobic digestion of garden waste was investigated in a two-stage process consisting of hyperthermophilic pretreatment followed by mesophilic or thermophilic fermentation. The greatest digestion performance was achieved when the substrates were first treated at 70 °C for 3 days with no inoculation, and then mixed with inoculum (anaerobic sludge) and subjected to anaerobic digestion at 55 °C. Under such conditions, the maximum methane and hydrogen yields from grass were 517 NmlCH₄/kgVS and 52 NmlH₂/kgVS, whereas the corresponding values for leaves were 421 NmlCH₄/kgVS and 23 NmlH₂/kgVS, and these figure were far greater than the yields obtained in experiments with no hyperthermophilic stage. A metagenomic analysis of hyperthermophilic environments revealed the appearance of thermophilic and hyperthermophilic bacteria showing hydrolytic activity against lignocellulosic materials, including Caldicellulosiruptor, Thermovenabulum, Thermoanaerobacter, Moorella, Tepimicrobium, Geobacillus and Thermobacillus at a genus level. A noticeable methane production in the hyperthermophilic stage could be linked to the presence of Methanothermobacter sp.

Realization of nitrite accumulation in a sulfide-driven autotrophic denitrification process: Simultaneous nitrate and sulfur removal

The study was based on the removal of nitrate and sulfide, and aimed to nitrite accumulation. The process of autotrophic denitrification driven by sulfide as an electron donor was investigated in a sequencing batch reactor. The research showed that autotrophic denitrification successfully started on day 22, and the removal rates of NO₃^--N and S^2--S were 95.8% and 100%, respectively, when the S/N molar ratio was 1.45. When the S/N ratio was reduced to 0.94, the phenomenon of NO₂^--N accumulation was observed. NO₂^--N continuously accumulated, and the maximum accumulation rate was 55.3% when the S/N ratio was 0.8. In the batch test, the study showed that NO₂^--N accumulation was optimal when the S/N ratio was 0.8, and the NO₂^--N concentration increased with increasing NO₃^--N concentration at the same S/N ratio. Microbial communities also changed based on the high-throughput analysis, and Proteobacteria (59.5%-84%) was the main phylum. Arenimonas (11.4%-28.2%) and uncultured_f_ Chromatiaceae (5.7%-27.5%) were the dominant bacteria, which complete denitrification and desulfurization throughout the operating system. Therefore, this study provided a theoretical basis for the simultaneous removal of NO₃^--N and S^2--S, as well as the accumulation of nitrite, and provided material support for anaerobic ammonia oxidation technology.

Degradation of Nitrogen, Phosphorus, and Organic Matter in Urban River Sediments by Adding Microorganisms

Reducing and remediating endogenous sediment pollution in urban rivers using appropriate microbiological remediation technology is regarded as a safe, effective, and environmentally sustainable mechanism. In this study, the pollutant removal efficiency of three microorganism types at different dosages was studied in the laboratory. To optimize the microbial restoration scheme, a comprehensive analysis of their effectiveness in removing total nitrogen (TN), total phosphorus (TP), total organic matter (OM), and polycyclic aromatic hydrocarbons (PAHs) was conducted, and associated structural changes in the sediment bacteria were analyzed. The results showed that using nitrifying bacteria and Bacillus as microbial agents resulted in superior removal efficiencies of TN and TP in sediments, whereas yeast was not as effective. The removal rates of TN reached 27.65% and 20.88% when 5 mg nitrifying bacteria and 10 mg Bacillus respectively, were used. A comparative analysis showed that nitrifying bacteria exhibited a better TN removal effect; however, Bacillus exhibited a better TP removal effect. The results of high-throughput sequencing revealed no significant changes to the microbial community structures when optimal microorganisms or beneficial microorganisms that thrive using OM as a source of C and energy were added. This study provides insights into the processes and mechanisms involved in the microorganism degradation of black and odorous sediment, and the results can be used as a basis for developing endogenous pollution control policies and methods for urban rivers.

Optimizing granulation of a sulfide-based autotrophic denitrification (SOAD) sludge: Reactor configuration and mixing mode

Challenges such as long-term cultivation and sludge floatation are common in flocculent sulfide-oxidizing autotrophic denitrification (SOAD) systems. The present study aims to optimize the granulation of SOAD sludge by mainly adjusting the reactor configuration and mixing mode. Three liquid-lift upflow reactors viz. a reactor equipped with a three-phase separator (Reactor A), a modified version of Reactor A equipped with a hydraulic regulator (Reactor B), and a reactor with a mounted baffle and intermittent mechanical mixing (Reactor C). These reactors were operated for more than 160 days. The results showed that dense and compact granules with 200 μm of diameter developed within 40 days and gradually increased to approximately 400 μm in Reactor C, which had a volatile suspended solids (VSS) concentration of 7500 mg VSS/L of sludge concentration; this Reactor C was also subject to modified reactor configuration and operating conditions. In comparison, filamentous granules formed in Reactor A due to a low substrate loading and granules formed in Reactor B but with significant biomass loss caused by sludge flotation. Both of the reactors only have ≤1000 mg VSS/L VS 7500 mg VSS/L in Reactor C. Also, Reactor C having 0.77 h of hydraulic retention time (HRT) and 0.94 kgNO₃^--N/m³ d & 1.87 kgS^2--S/m³ d of nitrogen and sulfide loading rate, respectively, showed a better performance in terms of nitrate removal (89%) and sulfur conversion (above 70%) due to its enrichment by the typical autotrophic denitrifiers (39.0% of Thiobacillus, 22.4% of Sulfurimonas) in the granules. Our findings provide a method to optimize the design and operation of granulation reactors that can be extended to similar processes treating organic-deficient wastewaters.

Simultaneous partial nitritation and denitritation coupled with polished anammox for advanced nitrogen removal from low C/N domestic wastewater at low dissolved oxygen conditions

Simultaneous partial nitritation and denitritation (SPND) coupled with anammox was established in this study to treat domestic wastewater. Two lab-scale bioreactors, namely SPND-SBR and ANA-UASB, were used in the two-stage system. In SPND-SBR, stable nitrogen removal efficiency of 51.1% was achieved with a high ammonia oxidation rate of 0.117 kg N/(m3·d). Besides, successful out-selection of nitrite-oxidizing bacteria (NOB) under low-DO of 0.1 mg/L during the steady period, resulting in an average effluent NO2--N/NH4+-N ratio of 1.04. In ANA-UASB, the abundance of Candidatus Brocadia and Candidatus Kuenenia increased from 8.21% and 4.01% to 21.33% and 6.41% with low influent substrate contents of only 38 mg N/L. The effluent total inorganic nitrogen (TIN) was only 8.4 ± 1.1 mg N/L and the nitrogen removal efficiency reached 88.24%. Overall, the study demonstrated that the novel low-DO two-stage process for nitrogen removal is a promising technique for wastewater of low C/N ratio.

Effects of Hydraulic Retention Time and Influent Nitrate-N Concentration on Nitrogen Removal and the Microbial Community of an Aerobic Denitrification Reactor Treating Recirculating Marine Aquaculture System Effluent

The effects of hydraulic retention time (HRT) and influent nitrate-N concentration on nitrogen removal and the microbial community composition of an aerobic denitrification reactor treating recirculating marine aquaculture system effluent were evaluated. Results showed that over 98% of nitrogen was removed and ammonia-N and nitrite-N levels were below 1 mg/L when influent nitrate-N was below 150 mg/L and HRT over 5 h. The maximum nitrogen removal efficiency and nitrogen removal rate were observed at HRT of 6 or 7 h when influent nitrate-N was 150 mg/L. High-throughput DNA sequencing analysis revealed that the microbial phyla Proteobacteria and Bacteroidetes were predominant in the reactor, with an average relative total abundance above 70%. The relative abundance of denitrifying bacteria of genera Halomonas and Denitratisoma within the reactor decreased with increasing influent nitrate-N concentrations. Our results show the presence of an aerobically denitrifying microbial consortium with both expected and unexpected members, many of them relatively new to science. Our findings provide insights into the biological workings and inform the design and operation of denitrifying reactors for marine aquaculture systems.

Bioenergy generation and simultaneous nitrate and phosphorus removal in a pyrite-based constructed wetland-microbial fuel cell

This study investigates the performance of a pyrite-based constructed wetland-microbial fuel cell (PCW-MFC) in chemical oxygen demand (COD), nitrate (NO₃^--N), total inorganic nitrogen (TIN), and total phosphorus (TP) removal and bioelectricity generation, and explores the mechanisms involved. Four microcosms were used: a constructed wetland (CW), a pyrite-based constructed wetland (PCW), a constructed wetland-microbial fuel cell (CW-MFC), and a PCW-MFC. After 180 days' operation, the PCW-MFC exhibited enhanced simultaneous nitrate and phosphorus removal and bioelectricity output. The maximum COD, NO₃^--N, TIN, and TP removal efficiencies in the PCW-MFC were 71.9%, 70.1%, 63.2%, and 91.2%, respectively, for a hydraulic retention time (HRT) of 6 h. The mean bioelectricity output of the PCW-MFC was 19.0-28.4% higher than that of the CW-MFC. The nitrate removal rate constant of the PCW-MFC was 1.04 d^-1, which is significantly higher than those of the others. Geobacter and sulfate-reducing bacteria were enriched in the PCW-MFC.

Continuous sulfur biotransformation in an anaerobic-anoxic sequential batch reactor involving sulfate reduction and denitrifying sulfide oxidization

The pathways and intermediates of continuous sulfur biotransformation in an anaerobic and anoxic sequential batch reactor (AA-SBR) involving sulfate reduction (SR) and denitrifying sulfide oxidization (DSO) were investigated. In the anoxic phase, DSO occurred in two sequential steps, the oxidation of sulfide (S^2-) to elemental sulfur (S⁰) and the oxidation of S⁰ to sulfate (SO₄^2-). The oxidation rate of S^2- to S⁰ was 3.31 times faster than that of S⁰ to SO₄^2-, resulting in the accumulation of S⁰ as a desired intermediate under S^2--S/NO₃^--N ratio (molar ratio) of 0.9:1. Although, approximately 60% of generated S⁰ suspended in the effluent, about 40% of S⁰ retained in the sludge, which could be further oxidized or reduced in anoxic or anaerobic phase. In anoxic, S⁰ was subsequently oxidized to SO₄^2- under S^2--S/NO₃^--N ratio of 0.5:1. In anaerobic, S⁰ coexist with SO₄^2- (in fresh wastewater) were simultaneously reduced to S^2-, and the reduction rate of SO₄^2- to S^2- was 3.17 times faster than that of S⁰ to S^2-, resulting in a higher production of S⁰ in subsequent anoxic phase. Microbial community analysis indicated that SO₄^2-/S⁰-reducing bacteria (e.g. Desulfomicrobium and Desulfuromonas) and S^2-/S⁰-oxidizing bacteria (e.g. Paracoccus and Thermothrix) co-participated in continuous sulfur biotransformation in the AA-SBR. A conceptual model was established to describe these main processes and key intermediates. The research offers a new insight into the reaction processes optimization for S⁰ recovery and simultaneous removal of SO₄^2- and NO₃^- in an AA-SBR.

The response of nitrogen removal and related bacteria within constructed wetlands after long-term treating wastewater containing environmental concentrations of silver nanoparticles

The wide application of consumer products containing silver nanoparticles (AgNPs) inevitably results in their release into sewer systems and wastewater treatment plants, where they would encounter (and cause potential negative impacts) constructed wetlands (CWs), a complex biological system containing plants, substrate and microorganisms. Herein, the long-term effects of environmental AgNPs concentrations on nitrogen removal, key enzymatic activities and nitrogen-related microbes in constructed wetlands (CWs) were investigated. The short-term exposure (40 d) to AgNPs significantly inhibited TN and NH₄⁺-N removal, and the inhibition degree had a positive relationship with AgNPs levels. After about 450 d exposure, 200 μg/L AgNPs could slightly increase average TN removal efficiency, while presence of 50 μg/L AgNPs showed no difference, compared to control. The NH₄⁺-N removal in all CWs had no difference. The present study indicated that short-term AgNPs loading evidently reduced nitrogen removal, whereas long-term exposure to AgNPs showed no adverse impacts on NH₄⁺-N removal and slightly stimulated TN removal, which was related to the increase of corresponding enzymatic activities. After exposing AgNPs for 450 d, the abundance of relative functional genes and the composition of key community structure were determined by qPCR and high-throughput sequencing, respectively. The results showed that the abundance of amoA and nxrA dramatically higher than control, whereas the abundance of nirK, nirS, nosZ and anammox 16S rRNA was slightly higher than control, but had no statistical difference, which accorded with the TN removal performance. The microbial community analysis showed that different AgNPs concentrations could affect the microbial diversity and structure. The changes of the relative abundance of nitrogen-related genera were associated with the impacts of AgNPs on the nitrogen removal performance. Overall, the AgNPs loading had impacts on the key enzymatic activities, the abundance of nitrogen-related genes and microbial community, thus finally affected the treatment performance of CWs.

High-concentration nitrogen removal coupling with bioelectric power generation by a self-sustaining algal-bacterial biocathode photo-bioelectrochemical system under daily light/dark cycle

High-concentration nitrogen removal coupled with bioelectric power generation in an algal-bacterial biocathode photo-bioelectrochemical system (PBES) was investigated. The PBES can self-sustaining operation with continuous power output under day/night cycle by alternately using photosynthetic dissolved oxygen and nitrate/nitrite as cathodic electron acceptors. The PBES generated a high maximum power of 110mw/m² under illumination and relatively lower power of 40mw/m² under dark. The bioelectricity generation was accompanied by high-concentration nitrogen removal in the algal-bacterial biocathode. The NH₄N was removed completely within 120 h while maximum NO₃N removal efficiency of 86% and maximum total nitrogen removal efficiency of 83% can be reached after 192 h at initial NH₄N concentration of 314 mg/L and NO₃N concentration of 330 mg/L. Combined processes of bioelectrochemical reduction and algal-bacterial interactions provided multiple approaches for nitrogen removal in the biocathode, including nitrifying using photosynthetic oxygen, bioelectrochemical denitrification using the cathode as electron donor, heterotrophic denitrification using photosynthetically produced dissolved organic matters as carbon source and algal-bacterial uptake. Accelerated nitrogen removal with simultaneously improved cathode performance was observed at high concentration of nitrogen and phosphate buffer due to enhanced algal activities for photosynthetic oxygen release and enhanced algal-bacterial interactions for nitrogen transformation. Addition of external organic carbon negatively affected nitrification and decreased cathode potential due to oxygen consumption by aerobic carbon oxidation but enhanced denitrification due to continuous release of high concentration of photosynthetically produced dissolved organic matters by alga. The PBEC was demonstrated as an energy-saving approach for high-strengthen nitrogenous wastewater treatment.

Simultaneous mercury oxidation and NO reduction in a membrane biofilm reactor

This work demonstrates bacterial oxidation of mercury (Hg⁰) coupled to nitric oxide (NO) reduction in a denitrifying membrane biofilm reactor (MBfR). In 93 days' operation, Hg⁰ and NO removal efficiency attained 90.7% and 74.1%, respectively. Thauera, Pseudomonas, Paracoccus and Pannonibacter played dual roles as Hg⁰ oxidizers and denitrifiers simultaneously. Denitrifying bacteria and the potential mercury resistant bacteria dominated the bacterial community. Denitrification-related genes (norB, norC, norD, norE, norQ and norV) and enzymatic Hg⁰ oxidation-related genes (katG, katE) were responsible for bacterial oxidation of Hg⁰ and NO reduction, as shown by metagenomic sequencing. XPS, HPLC-ICP-MS and SEM-EDS indicated the formation of a stable mercuric species (Hg²⁺) reasulting from Hg⁰ oxidation in the biofilm. Bacterial oxidation of Hg⁰ was coupled to NO reduction in which Hg⁰ served as the initial electron donor while NO served as the terminal electron acceptor and thereby redox between Hg⁰ and NO was formed. MBfR was capable of both Hg⁰ bio-oxidation and denitrifying NO reduction. This research opens up new possibilities for application of MBfR to simultaneous flue gas demercuration and denitration.

Adaptation of granular sludge microbial communities to nitrate, sulfide, and/or p-cresol removal

Effluents from petroleum refineries contain a toxic mixture of sulfide, nitrogen, and phenolic compounds that require adequate treatment for their removal. Biological denitrification processes are a cost-effective option for the treatment of these effluents, but the knowledge on the microbial interactions in simultaneous sulfide and phenol oxidation in denitrifying reactors is still very limited. In this work, microbial community structure and macrostructure of granular biomass were studied in three denitrifying reactors treating a mixture of inorganic (sulfide) and organic (p-cresol) electron donors for their simultaneous removal. The differences in the available substrates resulted in different community assemblies that supported high removal efficiencies, indicating the community adaptation capacity to the fluctuating compositions of industrial effluents. The three reactors were dominated by nitrate reducing and denitrifying bacteria where Thiobacillus spp. were the prevalent denitrifying organisms. The toxicity and lack of adequate substrates caused the endogenous decay of the biomass, leading to release of organic matter that maintained a diverse although not very abundant group of heterotrophs. The endogenous digestion of the granules caused the degradation of its macrostructure, which should be considered to further develop the denitrification process in sulfur-based granular reactors for treatment of industrial wastewater with toxic compounds.

Response of the reactor performance and microbial community to a shift of ISDD process from micro-aerobic to anoxic condition

Micro-aerobic condition has proven to be effective in enhancing sulfide oxidation to elemental sulfur (S⁰) during integrated simultaneous desulfurization and denitrification process (ISDD). In this study we investigated and compared the performance and microbial community of ISDD process operating under initially anoxic, then micro-aerobic and finally switch back to anoxic condition. For all the three tested scenarios, comparable bioreactor performance in terms of sulfate (95.0 ± 4.4%, 90.6 ± 3.8%, 89.8 ± 3.5%) and nitrate (∼100%) removal was achieved. However, a shift of ISDD bioreactor from micro-aerobic to anoxic environment clearly increased the S⁰ production (30.6%), relative to that at initial anoxic condition (14.2%). Further anoxic bioreactor operation with different influent nitrate concentrations also obtained satisfactory performance particularly in terms of S⁰ production. Microbial community analysis results showed that functional microorganisms selectively enriched at micro-aerobic condition, particularly sulfide-oxidizing bacteria (SOB), could also function well and enhance S⁰ production when bioreactor switching from micro-aerobic to anoxic environment. We proposed that micro-aerobic strategy could function as a bio-selector and provide a new idea in functional microorganisms selectively enrichment for wastewater treatment.

Identification of Thiobacillus bacteria in agricultural soil in Iran using the 16S rRNA gene

Thiobacillus, as useful soil bacteria, plays an important role in sulfur cycling. The purpose of this study was to identify the species Thiobacillus thioparus, Thiobacillus novellas and Thiobacillus denitrificans in rainfed and irrigated lands soil in Ajabshir, Ilam, Qorveh, Rojintaak, Sonqor, Kermanshah and Research Farm of Razi University in Iran. Sampling was performed as randomized completely with three replications at depth of 0-30 cm. The Thiobacillus species were determined via 16S rRNA characteristics. The results of agarose gel electrophoresis indicated that T. thioparus was the highest amount in the irrigated land in Research Farm and its lowest amount was in the Rojintaak rainfed land. These species not found in four locations and conditions including the Ajabshir irrigated, Qorveh rainfed, Research Farm rainfed and Rojintaak irrigated lands. The results of the T. novellas indicated that this was found in Ilam irrigated, Qorveh rainfed, Research Farm irrigated, Rojintaak irrigated and Rojintaak rainfed lands. The highest and lowest amount of T. novellas was indicated in the Rojintaak and Ilam irrigated lands respectively. The T. denitrificans gene showed that this bacterium was observed only in both samples of Ajabshir. Our study showed that Thiobacillus was not detected in all of the soils. If sulfur fertilizer is given to the soil without this bacterium, it is necessary to use sulfur fertilizer with Thiobacillus bacteria inoculation for better sulfur oxidation.

Effect of different carbon sources on denitrification performance, microbial community structure and denitrification genes

Solid and liquid organic substances as carbon sources for denitrification process were deeply explored. In this study, the effect of three carbon sources, referred to as poly (3-hydroxybutyrate-co-3-hydroxyvalerate)/poly (lactic acid) (PHBV/PLA) polymer, glucose and CH₃COONa, on denitrification performance, microbial community and functional genes were investigated. It was found that maximum denitrification rates of 0.37, 0.46 and 0.39gN/(L·d) were achieved in PHBV/PLA, glucose and CH₃COONa supported denitrification systems, respectively. Meanwhile, Illumina MiSeq sequencing revealed that three carbon sources led to different microbial community structures. It can be seen that Brevinema/Thauera/Dechloromonas, Tolumonas/Thauera/Dechloromonas, Thauera dominated in the PHBV/PLA, glucose and CH₃COONa supported denitrification systems, respectively. Transcriptome-based analysis further indicated that the glucose supported denitrification system showed the highest FPKM values (the fragments per kilobase per million mapped reads) of the genes participating in the dissimilatory nitrate reduction process, corresponding to the greatest effluent NH₄⁺-N concentration. A better knowledge of effect of different carbon sources on denitrification process will be significant for nitrate removal in practice.

Nitrogen removal by thiosulfate-driven denitrification and plant uptake in enhanced floating treatment wetland

This study investigated the potential of thiosulfate-driven autotrophic enhanced floating treatment wetland (AEFTW) in removing nitrogen from the secondary effluent at the relatively short hydraulic retention times and low S/N ratios. Simultaneous autotrophic and heterotrophic denitrification was observed in AEFTW. The peak TN removal rate (15.3gm^-2d^-1) exceeded most of the reported floating treatment wetlands. Based on the kinetic model results, low mean temperature coefficient and high k₂₀ verified that the excellent performance in AEFTW diminished the microbial dependence on temperature. Nitrogen removal performance of enhanced floating treatment wetland (EFTW) and floating treatment wetland (FTW) were similar and highly sensitive to temperature. The interaction of sulfur transformation on the nitrogen, carbon uptake of plants was studied. Thiosulfate addition significantly raised sulfur content in the shoots and further enhanced the uptake of nitrogen and carbon, and increased the plant biomass at the same time. Higher composition of autotrophic and heterotrophic denitrifiers in AEFTW interpreted the occurrence of mixotrophic denitrification during summer. Thiosulfate induced mutual promotion of nitrogen removal by plant uptake and microbial denitrification in AEFTW.

State of the art on granular sludge by using bibliometric analysis

With rapid industrialization and urbanization in the nineteenth century, the activated sludge process (ASP) has experienced significant steps forward in the face of greater awareness of and sensitivity toward water-related environmental problems. Compared with conventional flocculent ASP, the major advantages of granular sludge are characterized by space saving and resource recovery, where the methane and hydrogen recovery in anaerobic granular and 50% more space saving, 30-50% of energy consumption reduction, 75% of footprint cutting, and even alginate recovery in aerobic granular. Numerous engineers and scientists have made great efforts to explore the superiority over the last 40 years. Therefore, a bibliometric analysis was desired to trace the global trends of granular sludge research from 1992 to 2016 indexed in the SCI-EXPANDED. Articles were published in 276 journals across 44 subject categories spanning 1420 institutes across 68 countries. Bioresource Technology (293, 11.9%), Water Research (235, 9.6%), and Applied Microbiology and Biotechnology (127, 5.2%) dominated in top three journals. The Engineering (991, 40.3%), China (906, 36.9%), and Harbin Inst Technol, China (114, 4.6%) were the most productive subject category, country, and institution, respectively. The hotspot is the emerging techniques depended on granular reactors in response to the desired removal requirements and bio-energy production (primarily in anaerobic granular sludge). In view of advanced and novel bio-analytical methods, the characteristics, functions, and mechanisms for microbial granular were further revealed in improving and innovating the granulation techniques. Therefore, a promising technique armed with strengthened treatment efficiency and efficient resource and bio-energy recovery can be achieved.

Study on ammonium and organics removal combined with electricity generation in a continuous flow microbial fuel cell

A continuous microbial fuel cell system was constructed treating ammonium/organics rich wastewater. Operational performance of MFC system, mechanisms of ammonium removal, effect of ammonium on organics removal and energy output, C and N balance of anode chamber and microbial community analysis of anode chamber were studied. It was concluded that 0.0914kg/m³d NH₄⁺-N and 5.739kg/m³d COD were removed from anode chamber and simultaneous nitrification and denitrification (SND) occurred in cathode chamber resulting in COD, TN removal rate of 88.53%, 71.35% respectively. Excess ammonium affected energy output and the MFC system reached maximum energy output of 816.8mV and 62.94mW/m³. In anode chamber, Spirochaetes bacterium sp., Methanobacterium formicicum sp. was predominant in bacteria, archaea communities respectively which contributed to wastewater treatment and electricity generation. This study showed the potential for practical application of continuous flow MFC system treating ammonium/organics rich wastewater and achieving electricity generation simultaneously.

Enhanced nitrogen and phosphorus removal from municipal wastewater in an anaerobic-aerobic-anoxic sequencing batch reactor with sludge fermentation products as carbon source

An anaerobic-aerobic-anoxic sequencing batch reactor (AOA-SBR) using sludge fermentation products as carbon source was developed to enhance nitrogen and phosphorus removal in municipal wastewater with low C/N ratio (<4) and reduce sludge production. The AOA-SBR achieved simultaneous partial nitrification and denitrification (SND), aerobic phosphorus uptake and anoxic denitrification through the real-time control and the addition of sludge fermentation products. The average removal efficiencies of total nitrogen (TN), phosphorus (PO₄^3--P) and chemical oxygen demand (COD) after 145-day operation were 88.8%, 99.3% and 81.2%, respectively. Nitrite accumulation ratio (NAR) reached 99.1% and sludge reduction rate reached 44.1-52.1%. Specifically, 34.4% of the TN removal was carried out by SND and 57.5% by denitrification. Illumina MiSeq sequencing indicated that ammonium-oxidizing bacteria (Nitrosomonas) were enriched and nitrite-oxidizing bacteria (Nitrospira) did not exist in AOA-SBR. The system demonstrated potential to solve the dual problem of insufficient carbon source and sludge reduction.

Pyrosequencing reveals microbial community dynamics in integrated simultaneous desulfurization and denitrification process at different influent nitrate concentrations

Integrated simultaneous desulfurization and denitrification (ISDD) process has proven to be feasible for the coremoval of sulfate, nitrate, and chemical oxygen demand (COD). In this study, we aimed to reveal the microbial community dynamics in the ISDD process with different influent nitrate (NO₃^-) concentrations. For all tested scenarios, full denitrification was accomplished while sulfate removal efficiency decreased along with increased influent NO₃^- concentrations. The proportion of S⁰ to influent SO₄^2- maintained a low level (5.6-17.0%) regardless of the increased influent NO₃^- concentrations. Microbial community analysis results showed that higher influent NO₃^- concentrations affected the microbial community structure greatly. Phyla Proteobacteria, Spirochaetae, Firmicutes, Synergistetes, and Chloroflexi dominated in all the community compositions, of which Proteobacteria exhibited a clear difference among eight microbial samples. Members of δ-Proteobacteria, with 16S rRNA gene sequences related to Desulfobulbus, were clearly decreased at influent NO₃^- = 3000 and 3500 mg/L, suggesting an inhibitory effect of NO₃^- on sulfate reduction. In contrast, as influent NO₃^- concentration increased, microbial community was notably enriched in γ-Proteobacteria and ε-Proteobacteria, which revealed the enrichment of 16S rRNA gene sequences related to Pseudomonas (γ-Proteobacteria), and Arcobacteria and Sulfurospirillum (ε-Proteobacteria).

Nitrogen transforming bacteria within a full-scale partially saturated vertical subsurface flow constructed wetland treating urban wastewater

The aim of this study was to characterize the nitrogen transforming bacterial communities within a partially saturated vertical subsurface flow constructed wetland (VF) treating urban wastewater in southern Brazil. The VF had a surface area of 3144m², and was divided into four wetland cells, out of which two were operated while the other two rested, alternating cycles of 30days. The nitrifying and denitrifying bacterial communities were characterized in wetland cell 3 (764m² surface area) over a period of 12months by using the FISH technique. Samples were collected monthly (from Feb 2014 to Feb 2015) from different layers within the vertical profile, during operation and rest periods, comprising a total of 6 sampling campaigns while the cell was in operation and another 6 when the cell was at rest. This wetland cell operated with an average organic loading rate (OLR) of 4gCODm^-2d^-1 and a hydraulic loading rate of 24.5mmd^-1. The rest periods of the wetland cell presented influences on the abundance of ammonia-oxidizing bacteria (AOB) (8% and 3% for feed and rest periods, respectively), and nitrite-oxidizing bacteria (NOB) (5% and 2% for feed and rest periods, respectively). However, there was no influence of the rest periods on the denitrifying bacteria. AOB were only identified in the top layer (AOB β-proteobacteria) in both operational and rest periods. On the other hand, the NOB (Nistrospirae and Nitrospina gracilis) were identified in feed periods just in the top layer and during rest periods just in the intermediate layer. The denitrifying bacteria (Pseudomonas spp. and Thiobacillus denitrificans) were identified from the intermediate layer downwards, and remained stable in both periods. Based on the identified bacterial dynamics, the partially saturated VF wetland operated under low OLR enabled favorable conditions for simultaneous nitrification and denitrification.

Granulation of sulfur-oxidizing bacteria for autotrophic denitrification

Sulfur-oxidizing bacteria (SOB) was successfully employed for effective autotrophic denitrification and sludge minimization in a full-scale application of saline sewage treatment in Hong Kong. In this study, a Granular Sludge Autotrophic Denitrification (GSAD) reactor was continuously operated over 600 days for SOB granulation, and to evaluate the long-term stability of SOB granules, microbial communities and denitrification efficacy. Sludge granulation initiated within the first 40 days of start-up with an average particle size of 186.4 μm and sludge volume index (SVI₅) of 40 mL/g in 5 min. The sludge granules continued to grow reaching a nearly uniform size of mean diameter 1380 ± 20 μm with SVI₅ of 30 mL/g during 600 days of GSAD reactor operation at hydraulic retention time of 5 h and nitrate loading rate of 0.33 kg-N/m³/d. The GSAD reactor with SOB granular sludge achieved 93.7 ± 2.1% nitrogen and complete sulfide removal with low sludge yield of 0.15 g-volatile suspended solids (VSS)/g-N, and much lower nitrous oxide (N₂O) emission than the heterotrophic denitrifying process. Microbial community analysis using fluorescence in situ hybridization (FISH) technique revealed that granules were enriched with SOB contributing to autotrophic denitrification. Furthermore, 16S rRNA analysis showed diverse autotrophic denitrification related genera, namely Thiobacillus (32.6%), Sulfurimonas (31.3%), and Arcobacter (0.01%), accounting for 63.9% of total operational taxonomic units at the generic level. No heterotrophic denitrification related genera were detected. The results from this study could provide useful design and operating conditions with respect to SOB sludge granulation and its subsequent application in a full-scale autotrophic denitrification in the Sulfate reduction-Autotrophic denitrification-Nitrification Integrated (SANI) process.

Performance and microbial ecology of a nitritation sequencing batch reactor treating high-strength ammonia wastewater

The partial nitrification (PN) performance and the microbial community variations were evaluated in a sequencing batch reactor (SBR) for 172 days, with the stepwise elevation of ammonium concentration. Free ammonia (FA) and low dissolved oxygen inhibition of nitrite-oxidized bacteria (NOB) were used to achieve nitritation in the SBR. During the 172 days operation, the nitrogen loading rate of the SBR was finally raised to 3.6 kg N/m³/d corresponding the influent ammonium of 1500 mg/L, with the ammonium removal efficiency and nitrite accumulation rate were 94.12% and 83.54%, respectively, indicating that the syntrophic inhibition of FA and low dissolved oxygen contributed substantially to the stable nitrite accumulation. The results of the 16S rRNA high-throughput sequencing revealed that Nitrospira, the only nitrite-oxidizing bacteria in the system, were successively inhibited and eliminated, and the SBR reactor was dominated finally by Nitrosomonas, the ammonium-oxidizing bacteria, which had a relative abundance of 83%, indicating that the Nitrosomonas played the primary roles on the establishment and maintaining of nitritation. Followed by Nitrosomonas, Anaerolineae (7.02%) and Saprospira (1.86%) were the other mainly genera in the biomass.

Performance and microbial community of simultaneous anammox and denitrification (SAD) process in a sequencing batch reactor

A sequencing batch reactor (SBR) was used to test the simultaneous anammox and denitrification process. Optimal nitrogen removal was achieved with chemical oxygen demand (COD) of 150mg/L, during which almost all of ammonia, nitrite and nitrate could be removed. Organic matter was a key factor to regulate the synergy of anammox and denitrification. Both experimental ΔNO2(-)-N/ΔNH4(+)-N and ΔNO3(-)-N/ΔNH4(+)-N values deviated from their theoretical values with increasing COD. Denitrifying bacteria exhibited good diversity and abundance, but the diversity of anammox bacteria was less abundant. Brocadia sinica was able to grow in the presence of organic matter and tolerate high nitrite concentration. Anammox bacteria were predominant at low COD contents, while denitrifying bacteria dominated the microbial community at high COD contents. Anammox and denitrifying bacteria could coexist in one reactor to achieve the simultaneous carbon and nitrogen removal through the synergy of anammox and denitrification.

Sulfur-based denitrification: Effect of biofilm development on denitrification fluxes

Elemental sulfur (S(o)) can serve as an electron donor for denitrification. However, the mechanisms and rates of S(o)-based denitrification, which depend on a biofilm development on a solid S(o) surface, are not well understood. We used completely-mixed reactors packed with S(o) chips to systematically explore the behavior of S(o)-based denitrification as a function of the bulk nitrate (NO3(-)) concentration and biofilm development. High-purity (99.5%) and agricultural-grade (90% purity) S(o) chips were tested to explore differences in performance. NO3(-) fluxes followed a Monod-type relationship with the bulk NO3(-) concentration. For high-purity S(o), the maximum NO3(-) flux increased from 0.4 gN/m(2)-d at 21 days to 0.9 g N/m(2)-d at around 100 days, but then decreased to 0.65 gN/m(2)-d at 161 days. The apparent (extant) half-saturation constant for NO3(-) KSapp, based on the bulk NO3(-) concentration and NO3(-) fluxes into the biofilm, increased from 0.1 mgN/L at 21 days to 0.8 mgN/L at 161 days, reflecting the increasing mass transfer resistance as the biofilm thickness increased. Nitrite (NO2(-)) accumulation became significant at bulk NO3(-) concentration above 0.2 mgN/L. The behavior of the agricultural-grade S(o) was very similar to the high-purity S(o). The kinetic behavior of S(o)-based denitrification was consistent with substrate counter-diffusion, where the soluble sulfur species diffuse from the S(o) particle into the base of the biofilm, while NO3(-) diffuses into the biofilm from the bulk. Initially, the fluxes were low due to biomass limitation (thin biofilms). As the biofilm thickness increased with time, the fluxes first increased, stabilized, and then decreased. The decrease was probably due to increasing diffusional resistance in the thick biofilm. Results suggest that fluxes comparable to heterotrophic biofilm processes can be achieved, but careful management of biofilm accumulation is important to maintain high fluxes.

Direct 16S rRNA-seq from bacterial communities: a PCR-independent approach to simultaneously assess microbial diversity and functional activity potential of each taxon

The analysis of environmental microbial communities has largely relied on a PCR-dependent amplification of genes entailing species identity as 16S rRNA. This approach is susceptible to biases depending on the level of primer matching in different species. Moreover, possible yet-to-discover taxa whose rRNA could differ enough from known ones would not be revealed. DNA-based methods moreover do not provide information on the actual physiological relevance of each taxon within an environment and are affected by the variable number of rRNA operons in different genomes. To overcome these drawbacks we propose an approach of direct sequencing of 16S ribosomal RNA without any primer- or PCR-dependent step. The method was tested on a microbial community developing in an anammox bioreactor sampled at different time-points. A conventional PCR-based amplicon pyrosequencing was run in parallel. The community resulting from direct rRNA sequencing was highly consistent with the known biochemical processes operative in the reactor. As direct rRNA-seq is based not only on taxon abundance but also on physiological activity, no comparison between its results and those from PCR-based approaches can be applied. The novel principle is in this respect proposed not as an alternative but rather as a complementary methodology in microbial community studies.

Illumina MiSeq sequencing reveals the key microorganisms involved in partial nitritation followed by simultaneous sludge fermentation, denitrification and anammox process

A combined process including a partial nitritation SBR (PN-SBR) followed by a simultaneous sludge fermentation, denitrification and anammox reactor (SFDA) was established to treat low C/N domestic wastewater in this study. An average nitrite accumulation rate of 97.8% and total nitrogen of 9.4mg/L in the effluent was achieved during 140days' operation. The underlying mechanisms were investigated by using Illumina MiSeq sequencing to analyze the microbial community structures in the PN-SBR and SFDA. Results showed that the predominant bacterial phylum was Proteobacteria in the external waste activated sludge (WAS, added to the SFDA) and SFDA while Bacteroidetes in the PN-SBR. Further study indicated that in the PN-SBR, the dominant nitrobacteria, Nitrosomonas genus, facilitated nitritation and little nitrate was generated in the PN-SBR effluent. In the SFDA, the co-existence of functional microorganisms Thauera, Candidatus Anammoximicrobium and Pseudomonas were found to contribute to simultaneous sludge fermentation, denitrification and anammox.

Effect of nitrate concentration, pH, and hydraulic retention time on autotrophic denitrification efficiency with Fe(II) and Mn(II) as electron donors

The role of electron donors (Fe(2+) and Mn(2+)) in the autotrophic denitrification of contaminated groundwater by bacterial strain SY6 was characterized based on empirical laboratory-scale analysis. Strain SY6 can utilize Fe(2+) more efficiently than Mn(2+) as an electron donor. This study has shown that the highest nitrate removal ratio, observed with Fe(2+) as the electron donor, was approximately 88.89%. An immobilized biological filter reactor was tested by using three levels of influent nitrate (10, 30, and 50 mg/L), three pH levels (6, 7, and 8), and three levels of hydraulic retention time (HRT; 6, 8, and 12 h), respectively. An optimal nitrate removal ratio of about 95% was achieved at pH 6.0 using a nitrate concentration of 50 mg/L and HRT of 12 h with Fe(2+) as an electron donor. The study showed that 90% of Fe(2+) and 75.52% removal of Mn(2+) were achieved at pH 8.0 with a nitrate concentration of 50 mg/L and a HRT of 12 h. Removal ratio of Fe(2+) and Mn(2+) is higher with higher influent nitrate and HRT. A weakly alkaline environment assisted the removal of Fe(2+) and Mn(2+).

Effects of octahedral molecular sieve on treatment performance, microbial metabolism, and microbial community in expanded granular sludge bed reactor

This study evaluated the effects of synthesized octahedral molecular sieve (OMS-2) nanoparticles on the anaerobic microbial community in a model digester, expanded granular sludge bed (EGSB) reactor. The addition of OMS-2 (0.025 g/L) in the EGSB reactors resulted in an enhanced operational performance, i.e., COD removal and biogas production increased by 4% and 11% respectively, and effluent volatile fatty acid (VFA) decreased by 11% relative to the control group. The Biolog EcoPlate™ test was employed to investigate microbial metabolism in the EGSB reactors. Results showed that OMS-2 not only increased the microbial metabolic level but also significantly changed the community level physiological profiling of the microorganisms. The Illumina MiSeq high-throughput sequencing of 16S rRNA gene indicated OMS-2 enhanced the microbial diversity and altered the community structure. The largest bacterial genus Lactococcus, a lactic acid bacterium, reduced from 29.3% to 20.4% by abundance in the presence of 0.25 g/L OMS-2, which may be conducive to decreasing the VFA production and increasing the microbial diversity. OMS-2 also increased the quantities of acetogenic bacteria and Archaea, and promoted the acetogenesis and methanogenesis. The X-ray photoelectron spectroscopy illustrated that Mn(IV)/Mn(III) with high redox potential in OMS-2 were reduced to Mn(II) in the EGSB reactors; this in turn affected the microbial community.

Characterization of the anaerobic denitrification bacterium Acinetobacter sp. SZ28 and its application for groundwater treatment

Acinetobacter sp. SZ28 exhibited efficient autotrophic denitrification ability using Mn(2+) as an electron donor. Sequence amplification identified the presence of the nirS gene. Meteorological chromatography analysis showed that N2 was produced as an end product. Response surface methodology experiments showed that the maximum removal of nitrate occurred under the following conditions: Mn(2+) concentration of 143.56 mg/L, C/N ratio of 6.82, initial pH of 5.17, and temperature of 34.26 °C, where the initial Mn(2+) concentration produced the largest effect. In the groundwater experiment, nitrate levels decreased from 1.63 mg/L to 0 mg/L. Three-dimensional fluorescence analysis showed a decrease in the peak intensity of the original humus. Humus and the small-molecule amino acid tryptophan were detected. These results demonstrated that strain SZ28 is a suitable candidate for the simultaneous removal of nitrogen and Mn(2+) in groundwater treatment.

System evaluation and microbial analysis of a sulfur cycle-based wastewater treatment process for Co-treatment of simple wet flue gas desulfurization wastes with freshwater sewage

A sulfur cycle-based wastewater treatment process, namely the Sulfate reduction, Autotrophic denitrification and Nitrification Integrated process (SANI(®) process) has been recently developed for organics and nitrogen removal with 90% sludge minimization and 35% energy reduction in the biological treatment of saline sewage from seawater toilet flushing practice in Hong Kong. In this study, sulfate- and sulfite-rich wastes from simple wet flue gas desulfurization (WFGD) were considered as a potential low-cost sulfur source to achieve beneficial co-treatment with non-saline (freshwater) sewage in continental areas, through a Mixed Denitrification (MD)-SANI process trialed with synthetic mixture of simple WFGD wastes and freshwater sewage. The system showed 80% COD removal efficiency (specific COD removal rate of 0.26 kg COD/kg VSS/d) at an optimal pH of 7.5 and complete denitrification through MD (specific nitrogen removal rate of 0.33 kg N/kg VSS/d). Among the electron donors in MD, organics and thiosulfate could induce a much higher denitrifying activity than sulfide in terms of both NO3(-) reduction and NO2(-) reduction, suggesting a much higher nitrogen removal rate in organics-, thiosulfate- and sulfide-based MD in MD-SANI compared to sulfide alone-based autotrophic denitrification in conventional SANI(®). Diverse sulfate/sulfite-reducing bacteria (SRB) genera dominated in the bacterial community of sulfate/sulfite-reducing up-flow sludge bed (SRUSB) sludge without methane producing bacteria detected. Desulfomicrobium-like species possibly for sulfite reduction and Desulfobulbus-like species possibly for sulfate reduction are the two dominant groups with respective abundance of 24.03 and 14.91% in the SRB genera. Diverse denitrifying genera were identified in the bacterial community of anoxic up-flow sludge bed (AnUSB) sludge and the Thauera- and Thiobacillus-like species were the major taxa. These results well explained the successful operation of the lab-scale MD-SANI process.

Identification and quantification of microbial populations in activated sludge and anaerobic digestion processes

Eight different phenotypes were studied in an activated sludge process (AeR) and anaerobic digester (AnD) in a full-scale wastewater treatment plant by means of fluorescent in situ hybridization (FISH) and automated FISH quantification software. The phenotypes were ammonia-oxidizing bacteria, nitrite-oxidizing bacteria, denitrifying bacteria, phosphate-accumulating organisms (PAO), glycogen-accumulating organisms (GAO), sulphate-reducing bacteria (SRB), methanotrophic bacteria and methanogenic archaea. Some findings were unexpected: (a) Presence of PAO, GAO and denitrifiers in the AeR possibly due to unexpected environmental conditions caused by oxygen deficiencies or its ability to survive aerobically; (b) presence of SRB in the AeR due to high sulphate content of wastewater intake and possibly also due to digested sludge being recycled back into the primary clarifier; (c) presence of methanogenic archaea in the AeR, which can be explained by the recirculation of digested sludge and its ability to survive periods of high oxygen levels; (d) presence of denitrifying bacteria in the AnD which cannot be fully explained because the nitrate level in the AnD was not measured. However, other authors reported the existence of denitrifiers in environments where nitrate or oxygen was not present suggesting that denitrifiers can survive in nitrate-free anaerobic environments by carrying out low-level fermentation; (e) the results of this paper are relevant because of the focus on the identification of nearly all the significant bacterial and archaeal groups of microorganisms with a known phenotype involved in the biological wastewater treatment.