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Liu Y, Cao Q, Yong S, Wang J, Chen X, Xiao Y, Lin J, Yang M, Wang K, Li X, Zhu X, Zhang X. Optimal structural characteristics of osteoinductivity in bioceramics derived from a novel high-throughput screening plus machine learning approach. Biomaterials 2025; 321:123348. [PMID: 40262463 DOI: 10.1016/j.biomaterials.2025.123348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2024] [Revised: 03/10/2025] [Accepted: 04/14/2025] [Indexed: 04/24/2025]
Abstract
Osteoinduction is an important feature of the next generation of bone repair materials. But the key structural factors and parameters of osteoinductive scaffolds are not yet clarified. This study leverages the efficiency of high-throughput screening in identifying key structural factors, performs screening of 24 different porous structures using 3D printed calcium phosphate (CaP) ceramic scaffolds. Based on in vitro and in vivo evaluations, along with machine learning and nonlinear fitting, it explores the complex relationship between osteoinductive properties and scaffold configurations. Results indicate that bone regenerative ability is largely affected by porosity and specific surface area (SSA), while pore geometry has a negligible effect. The optimal structural parameters were identified as a porous structure with SSA of 10.49-10.69 mm2 mm-3 and permeability of 3.74 × 10-9 m2, which enhances osteoinductivity and scaffold properties, corresponding to approximately 65 %-70 % porosity. Moreover, nonlinear fitting reveals specific correlations among SSA, permeability and osteogenic gene expressions. We established a data-driven high-throughput screening methodology and proposed a parametric benchmark for osteoinductive structures, providing critical insights for the design of future osteoinductive scaffolds.
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Affiliation(s)
- Yunyi Liu
- National Engineering Research Center for Biomaterials, Sichuan University, Chengdu, 610064, China; College of Biomedical Engineering, Sichuan University, Chengdu, 610064, China
| | - Quanle Cao
- National Engineering Research Center for Biomaterials, Sichuan University, Chengdu, 610064, China; College of Biomedical Engineering, Sichuan University, Chengdu, 610064, China
| | - Shengyi Yong
- National Engineering Research Center for Biomaterials, Sichuan University, Chengdu, 610064, China; College of Biomedical Engineering, Sichuan University, Chengdu, 610064, China
| | - Jing Wang
- National Engineering Research Center for Biomaterials, Sichuan University, Chengdu, 610064, China; College of Biomedical Engineering, Sichuan University, Chengdu, 610064, China
| | - Xuening Chen
- Provincial Engineering Research Center for Biomaterials Genome of Sichuan & Research Center for Material Genome Engineering, Sichuan University, Chengdu, 610064, China; National Engineering Research Center for Biomaterials, Sichuan University, Chengdu, 610064, China; College of Biomedical Engineering, Sichuan University, Chengdu, 610064, China
| | - Yumei Xiao
- Provincial Engineering Research Center for Biomaterials Genome of Sichuan & Research Center for Material Genome Engineering, Sichuan University, Chengdu, 610064, China; National Engineering Research Center for Biomaterials, Sichuan University, Chengdu, 610064, China; College of Biomedical Engineering, Sichuan University, Chengdu, 610064, China
| | - Jiangli Lin
- Provincial Engineering Research Center for Biomaterials Genome of Sichuan & Research Center for Material Genome Engineering, Sichuan University, Chengdu, 610064, China; College of Biomedical Engineering, Sichuan University, Chengdu, 610064, China
| | - Mingli Yang
- Provincial Engineering Research Center for Biomaterials Genome of Sichuan & Research Center for Material Genome Engineering, Sichuan University, Chengdu, 610064, China; College of Biomedical Engineering, Sichuan University, Chengdu, 610064, China
| | - Kefeng Wang
- Provincial Engineering Research Center for Biomaterials Genome of Sichuan & Research Center for Material Genome Engineering, Sichuan University, Chengdu, 610064, China; National Engineering Research Center for Biomaterials, Sichuan University, Chengdu, 610064, China; College of Biomedical Engineering, Sichuan University, Chengdu, 610064, China.
| | - Xiangfeng Li
- Provincial Engineering Research Center for Biomaterials Genome of Sichuan & Research Center for Material Genome Engineering, Sichuan University, Chengdu, 610064, China; National Engineering Research Center for Biomaterials, Sichuan University, Chengdu, 610064, China; College of Biomedical Engineering, Sichuan University, Chengdu, 610064, China.
| | - Xiangdong Zhu
- Provincial Engineering Research Center for Biomaterials Genome of Sichuan & Research Center for Material Genome Engineering, Sichuan University, Chengdu, 610064, China; National Engineering Research Center for Biomaterials, Sichuan University, Chengdu, 610064, China; College of Biomedical Engineering, Sichuan University, Chengdu, 610064, China.
| | - Xingdong Zhang
- Provincial Engineering Research Center for Biomaterials Genome of Sichuan & Research Center for Material Genome Engineering, Sichuan University, Chengdu, 610064, China; National Engineering Research Center for Biomaterials, Sichuan University, Chengdu, 610064, China; College of Biomedical Engineering, Sichuan University, Chengdu, 610064, China
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Chehreh Chelgani S, Fatahi R, Pournazari A, Nasiri H. Modeling energy consumption indexes of an industrial cement ball mill for sustainable production. Sci Rep 2025; 15:18514. [PMID: 40425686 DOI: 10.1038/s41598-025-03232-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2025] [Accepted: 05/19/2025] [Indexed: 05/29/2025] Open
Abstract
The total cement energy consumption is around 5% of global industrial energy usage. In cement plants, mills consume half of this energy for dry grinding particles. However, grinding in tumbling mills is a random process, and a maximum of 5% of this energy would be directly devoted to particle size reduction. Thus, understanding interactions between operation variables and the mill energy consumption factors would be essential for sustainable cement production and green transition. Surprisingly, few investigations were conducted to study the energy consumption indexes of cement mills. Using a conscious lab "CL" as an advanced AI structure for industrial-scale problems could facilitate such an understanding of interactions within cement mill variables and promote controlling energy consumption for sustainable production. To fill the gap, this study developed a CL by examining different AI models (Random Forest, Support Vector Regression, Convolutional Neural Network, extreme gradient boosting, CatBoost, and SHapley Additive exPlanations) for modeling energy consumption indexes of a close ball mill circuit in a cement plant to address the effectiveness of operating variables. Explainable AI modeling highlighted interactions and measured the effectiveness of operating variables on mill energy consumption indexes. The airlift current and separator variables ranked the most effective operating factors on the mill energy consumption indexes. CatBoost, as an advanced AI model, showed the highest prediction accuracy for modeling (R2: 0.90). Such a CL model for a cement mill can be used for training operators, controlling the process, saving time and energy, reducing laboratory work, and scaling issues, and finally enhancing sustainability.
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Affiliation(s)
- Saeed Chehreh Chelgani
- Minerals and Metallurgical Engineering, Department of Civil, Environmental and Natural Resources Engineering, Swedish School of Mines, Luleå University of Technology, Luleå, Sweden.
- Wallenberg Initiative Materials Science for Sustainability, Department of Civil, Environmental and Natural Resources Engineering, Swedish School of Mines, Luleå University of Technology, Luleå, Sweden.
| | - Rasoul Fatahi
- School of Mining Engineering, College of Engineering, University of Tehran, Tehran, 16846-13114, Iran
| | | | - Hamid Nasiri
- School of Computing and Communications, Lancaster University, Lancaster, UK.
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Ninan J, Nikravangolsefid N, Truong HH, Charkviani M, Prokop LJ, Murugan R, Clermont G, Kashani KB, Domecq Garces JP. Prediction of intradialytic hypotension by machine learning: A systematic review. J Nephrol 2025:10.1007/s40620-025-02288-4. [PMID: 40317447 DOI: 10.1007/s40620-025-02288-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2024] [Accepted: 03/24/2025] [Indexed: 05/07/2025]
Abstract
BACKGROUND Intradialytic hypotension is associated with increased morbidity, and mortality. Several machine learning (ML) algorithms have been recently developed to predict intradialytic hypotension. We systematically reviewed ML models employed to predict intradialytic hypotension, their performance, methodological integrity, and clinical applicability. METHODS We conducted this systematic review with a pre-established protocol registered at the International Prospective Register of Systematic Reviews (PROSPERO ID: CRD42022362194). Six databases, from their inception to July 20, 2023, were comprehensively searched. Two independent investigators reviewed the articles, extracted data, and evaluated the risk of bias using the Prediction model Risk of Bias Assessment Tool (PROBAST). RESULTS Out of 84 screened articles, 16 studies with 14,500 adult patients on hemodialysis were included in the review. Fourteen studies (87.5%) were found to have a high risk of bias. The intradialytic hypotension prevalence in the population investigated was between 1.2 and 51%. A diverse range of predictive ML tools were used to predict intradialytic hypotension, with various neural networking models being the most frequent, appearing in 13 studies (AUROC ranges: 0.684-0.978). One study performed both internal and external validation. CONCLUSIONS Researchers have made a concerted effort to develop ML tools to predict intradialytic hypotension. Despite their significant efforts, the lack of thorough external and clinical validation, and heterogeneity among the models and settings have resulted in a substantial challenge to offering ML tools as a global intradialytic hypotension prevention and management solution. Future studies should focus on external and clinical validation of these models to enhance the chances of clinically relevant changes in clinical practices.
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Affiliation(s)
- Jacob Ninan
- Department of Nephrology and Critical Care Medicine, MultiCare Capital Medical Center, Olympia, WA, USA.
| | - Nasrin Nikravangolsefid
- Division of Nephrology and Hypertension, Department of Medicine, Mayo Clinic, Rochester, MN, USA
| | - Hong Hieu Truong
- Division of Nephrology and Hypertension, Department of Medicine, Mayo Clinic, Rochester, MN, USA
- Department of Medicine, Saint Francis Hospital, Evanston, IL, USA
| | - Mariam Charkviani
- Division of Nephrology and Hypertension, Department of Medicine, Mayo Clinic, Rochester, MN, USA
| | | | - Raghavan Murugan
- Department of Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA
| | - Gilles Clermont
- Department of Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA
| | - Kianoush B Kashani
- Division of Nephrology and Hypertension, Department of Medicine, Mayo Clinic, Rochester, MN, USA
| | - Juan Pablo Domecq Garces
- Division of Nephrology and Hypertension, Department of Medicine, Mayo Clinic, Rochester, MN, USA
- Department of Critical Care Medicine, Mayo Clinic Health System, Mankato, MN, USA
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Kouider Amar M, Moussa H, Hentabli M. Predicting the anticancer activity of indole derivatives: A novel GP-tree-based QSAR model optimized by ALO with insights from molecular docking and decision-making methods. Comput Biol Med 2025; 189:109988. [PMID: 40058079 DOI: 10.1016/j.compbiomed.2025.109988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2024] [Revised: 02/27/2025] [Accepted: 03/03/2025] [Indexed: 04/01/2025]
Abstract
Indole derivatives have demonstrated significant potential as anticancer agents; however, the complexity of their structure-activity relationships and the high dimensionality of molecular descriptors present challenges in the drug discovery process. This study addresses these challenges by introducing a modified GP-Tree feature selection algorithm specifically designed for regression tasks and high-dimensional feature spaces. The algorithm effectively identifies relevant descriptors for predicting LogIC50 values, the target variable. Furthermore, the GP-Tree method adeptly balances the selection of both positively and negatively contributing descriptors, enhancing the performance of DT, k-NN, and RF models. Additionally, the SMOGN technique was employed to address class imbalances, expanding the dataset to 1381 instances and enhancing the accuracy of IC50 predictions. Various machine learning models were optimized using probabilistic and nature-inspired algorithms, with the Ant Lion Optimizer (ALO) demonstrating the highest efficacy. The AdaBoost-ALO (ADB-ALO) model outperformed all other models, such as MLR, SVR, ANN, k-NN, DT, XGBoost, and RF, achieving an R2 of 0.9852 across the entire dataset, an RMSE of 0.1470, and a high CCC of 0.9925. SHAP analysis revealed critical descriptors, such as TopoPSA and electronic properties, which are essential for potent anticancer activity. Furthermore, molecular docking, in conjunction with the Weighted Sum Method (WSM), identified promising candidates, particularly N-amide derivatives of indole-benzimidazole-isoxazoles, which exhibit dual inhibition against topoisomerase I and topoisomerase II enzymes. Consequently, this research integrates computational predictions with experimental insights to accelerate the discovery of novel anticancer therapies through the accurate prediction and interpretation of the anti-prostate cancer activity of indole derivatives.
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Affiliation(s)
- Mohamed Kouider Amar
- Biomaterials and Transport Phenomena Laboratory, Faculty of Technology, University Yahia Fares of Medea, 26000, Medea, Algeria; Laboratory of Quality Control, Physico-Chemical Department, SAIDAL of Medea, Medea, Algeria.
| | - Hamza Moussa
- Département des Sciences Biologiques, Faculté des Sciences de La Nature et de La Vie et des Sciences de La Terre, Université de Bouira, 10000, Bouira, Algeria
| | - Mohamed Hentabli
- Biomaterials and Transport Phenomena Laboratory, Faculty of Technology, University Yahia Fares of Medea, 26000, Medea, Algeria; Laboratory of Quality Control, Physico-Chemical Department, SAIDAL of Medea, Medea, Algeria
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Polychronopoulos ND, Sarris I, Vlachopoulos J. Implementation of Machine Learning in Flat Die Extrusion of Polymers. Molecules 2025; 30:1879. [PMID: 40363687 PMCID: PMC12073372 DOI: 10.3390/molecules30091879] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2025] [Revised: 04/18/2025] [Accepted: 04/21/2025] [Indexed: 05/15/2025] Open
Abstract
Achieving a uniform thickness and defect-free production in the flat die extrusion of polymer sheets and films is a major challenge. Dies are designed for one extrusion scenario, for a polymer grade with specified rheological behavior, and for a given throughput rate. The extrusion of different polymer grades and at different flow rates requires trial-and-error procedures. This study investigated the application of machine learning (ML) to provide guidance for the extrusion of sheets and films with a reduced thickness, non-uniformities, and without defects. A dataset of 200 cases was generated using computer simulation software for flat die extrusion. The dataset encompassed variations in die geometry by varying the gap under a restrictor, polymer rheological and thermophysical properties, and processing conditions, including throughput rate and temperatures. The dataset was used to train and evaluate the following three powerful machine learning (ML) algorithms: Random Forest (RF), XGBoost, and Support Vector Regression (SVR). The ML models were trained to predict thickness variations, pressure drops, and the lowest wall shear rate (targets). Using the SHapley Additive exPlanations (SHAP) analysis provided valuable insights into the influence of input features, highlighting the critical roles of polymer rheology, throughput rate, and the gap beneath the restrictor in determining targets. This ML-based methodology has the potential to reduce or even eliminate the use of trial and error procedures.
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Affiliation(s)
- Nickolas D. Polychronopoulos
- Department of Mechanical Engineering, University of West Attica, Ancient Olive Grove Campus, Egaleo, 12241 Athens, Greece;
| | - Ioannis Sarris
- Department of Mechanical Engineering, University of West Attica, Ancient Olive Grove Campus, Egaleo, 12241 Athens, Greece;
| | - John Vlachopoulos
- Department of Chemical Engineering, McMaster University, Hamilton, ON L8S 4L7, Canada
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Chandrasekar V, Mohammad S, Aboumarzouk O, Singh AV, Dakua SP. Quantitative prediction of toxicological points of departure using two-stage machine learning models: A new approach methodology (NAM) for chemical risk assessment. JOURNAL OF HAZARDOUS MATERIALS 2025; 487:137071. [PMID: 39808958 DOI: 10.1016/j.jhazmat.2024.137071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2024] [Revised: 12/11/2024] [Accepted: 12/31/2024] [Indexed: 01/16/2025]
Abstract
Point of departure (POD) is a concept used in risk assessment to calculate the reference dose of exposure that is likely to have no appreciable risk on health. POD can be directly utilized from no observed adverse effect levels (NOAEL) which is the dose or exposure level at which there is little or no risk of adverse effects. However, NOAEL values are unavailable for most of the chemicals due to inconsistent animal toxicity data. Hence, the current study utilizes a two-stage machine learning (ML) model for predicting NOAEL values, based on data curated from diverse toxicity exposures. In the first stage, a random forest regressor is used for supervised outlier detection and removal addressing any variability in data and poor correlations. The refined data is then used for toxicity prediction using several ML models; random forest and XGBoost show relatively higher performance with an R2 value of 0.4 and 0.43, respectively, for predicting NOAEL in chronic toxicity. Similarly, feature combinations with absorption distribution metabolism and excretion (ADME) indicate better NOAEL prediction for acute toxicity. External validation is performed by predicting NOAEL values for cosmetic pigments and calculating reference doses (RfD). Notably, pigments like orange and red show higher RfD values, indicating broader safety margins. This study provides a practical framework for addressing variability and data limitations in toxicity prediction while offering insights into its applicability in risk evaluation.
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Affiliation(s)
- Vaisali Chandrasekar
- Department of Surgery, Clinical Advancement Department, Hamad Medical Corporation, Qatar
| | - Syed Mohammad
- Department of Surgery, Clinical Advancement Department, Hamad Medical Corporation, Qatar
| | - Omar Aboumarzouk
- Department of Surgery, Clinical Advancement Department, Hamad Medical Corporation, Qatar; College of Health and Medical Sciences, Qatar University, Qatar
| | | | - Sarada Prasad Dakua
- Department of Surgery, Clinical Advancement Department, Hamad Medical Corporation, Qatar; College of Health and Medical Sciences, Qatar University, Qatar.
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Zhou G, E H, Kuang Z, Tan L, Yao T, Song M. Intradialytic Hypotension Frequency Prediction Using Generalizable Neighborhood Reasoning on Temporal Patient Knowledge Graph. IEEE J Biomed Health Inform 2025; 29:2233-2245. [PMID: 40030218 DOI: 10.1109/jbhi.2024.3503061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2025]
Abstract
Intradialytic hypotension (IDH) is a common complication among hemodialysis patients, adversely affecting quality of life and elevating mortality risk. IDH prediction enables physicians to take proactive measures, effectively reducing its occurrence. However, most prediction works rely on machine learning models, with a focus on real-time or session-level IDH. Hemodialysis patient data is multi-type and temporal, necessitating research on patient condition representation and temporal information utilization. Knowledge graphs (KGs) offer flexible data modeling and encompass rich structured information. This study represents patients using KGs and reason on graph structures to predict IDH. To study monthly IDH and utilize temporal information, a temporal patient KG is constructed. Patient KGs are first built at the monthly granularity based on data of 532 patients between January 2017 and August 2022. Six sequential monthly KGs are then combined into an observation window, resulting in a temporal KG dataset of 15,807 independent windows from 458 patients. The aim of this study is to utilize information from multiple months within a window to predict frequent IDH in the last month. However, the characteristics of IDH scenario and generalizability requirement pose challenges for the application of general KG reasoning models. Therefore, we adopt neighborhood-based KG reasoning and devise a visible feature guided patient-centric graph convolution to obtain patients' generalizable representations. Finally, patient representations in a window are fused using a sequential model, and processed by a prediction MLP to obtain the prediction results. Compared to 7 classic machine learning models, our model demonstrates superior performance in comprehensive metrics such as accuracy and F1 score.
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Ren Z, Zhang M, Wang P, Chen K, Wang J, Wu L, Hong Y, Qu Y, Luo Q, Cai K. Research on the development of an intelligent prediction model for blood pressure variability during hemodialysis. BMC Nephrol 2025; 26:82. [PMID: 39962403 PMCID: PMC11834630 DOI: 10.1186/s12882-025-03959-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2024] [Accepted: 01/10/2025] [Indexed: 02/20/2025] Open
Abstract
OBJECTIVE Blood pressure fluctuations during dialysis, including intradialytic hypotension (IDH) and intradialytic hypertension (IDHTN), are common complications among patients undergoing maintenance hemodialysis. Early prediction of IDH and IDHTN can help reduce the occurrence of these fluctuations. With the development of artificial intelligence, machine learning and deep learning models have become increasingly sophisticated in the field of hemodialysis. Utilizing machine learning to predict blood pressure fluctuations during dialysis has become a viable predictive method. METHODS Our study included data from 67,524 hemodialysis sessions conducted at Ningbo No.2 Hospital and Xiangshan First People's Hospital from August 1, 2019, to September 30, 2023. 47,053 sessions were used for model training and testing, while 20,471 sessions were used for external validation. We collected 45 features, including general information, vital signs, blood routine, blood biochemistry, and other relevant data. Data not meeting the inclusion criteria were excluded, and feature engineering was performed. The definitions of IDH and IDHTN were clarified, and 10 machine learning algorithms were used to build the models. For model development, the dialysis data were randomly split into a training set (80%) and a testing set (20%). To evaluate model performance, six metrics were used: accuracy, precision, recall, F1 score, ROC-AUC, and PR-AUC. Shapley Additive Explanation (SHAP) method was employed to identify eight key features, which were used to develop a clinical application utilizing the Streamlit framework. RESULTS Statistical analysis showed that IDH occurred in 56.63% of hemodialysis sessions, while the incidence of IDHTN was 23.53%. Multiple machine learning models (e.g., CatBoost, RF) were developed to predict IDH and IDHTN events. XGBoost performed the best, achieving ROC-AUC scores of 0.89 for both IDH and IDHTN in internal validation, with PR-AUC scores of 0.95 and 0.78, and high accuracy, precision, recall, and F1 scores. The SHAP method identified pre-dialysis systolic blood pressure, BMI, and pre-dialysis mean arterial pressure as the top three important features. It has been translated into a convenient application for use in clinical settings. CONCLUSION Using machine learning models to predict IDH and IDHTN during hemodialysis is feasible and provides clinically reliable predictive performance. This can help timely implement interventions during hemodialysis to prevent problems, reduce blood pressure fluctuations during dialysis, and improve patient outcomes.
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Affiliation(s)
- Zhijian Ren
- Department of Nephrology, Ningbo No.2 Hospital, Ningbo, PR China
- Department of Nephrology, Ninghai County Hospital of Traditional Chinese Medicine, Ningbo, PR China
| | - Minqiao Zhang
- Department of Nephrology, the First People's Hospital of Xiangshan, Ningbo, 315700, PR China
| | - Pingping Wang
- Department of Rehabilitation, Ninghai First Hospital, Ningbo, PR China
| | - Kanan Chen
- Department of Nephrology, Ningbo No.2 Hospital, Ningbo, PR China
| | - Jing Wang
- Department of Nephrology, Ningbo No.2 Hospital, Ningbo, PR China
| | - Lingping Wu
- Department of Nephrology, Ningbo No.2 Hospital, Ningbo, PR China
| | - Yue Hong
- Department of Nephrology, Ningbo No.2 Hospital, Ningbo, PR China
| | - Yihui Qu
- Department of Nephrology, Ningbo No.2 Hospital, Ningbo, PR China
| | - Qun Luo
- Department of Nephrology, Ningbo No.2 Hospital, Ningbo, PR China
| | - Kedan Cai
- Department of Nephrology, Ningbo No.2 Hospital, Ningbo, PR China.
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Shah S, Oh J, Bang Y, Jung S, Kim HC, Jeong KS, Park MH, Lee KA, Ryoo JH, Kim YJ, Song S, Park H, Ha E. Pregnant women's lifestyles and exposure to endocrine-disrupting chemicals: A machine learning approach. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2025; 366:125309. [PMID: 39542163 DOI: 10.1016/j.envpol.2024.125309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2024] [Revised: 11/08/2024] [Accepted: 11/11/2024] [Indexed: 11/17/2024]
Abstract
Women have ubiquitous exposure to various endocrine disrupting chemicals (EDCs) present in personal care products, food packaging, and processing. Pregnancy is a phase of increased vulnerability to environmental stressors. Therefore, we aimed to identify questionnaire based variables of pregnant women's lifestyle factors affecting the prenatal concentrations of EDCs: bis-phenol A (BPA), triclosan (TCS), parabens, and phthalates. We also aimed to explore the association between these lifestyle factors and EDC exposure in pregnant women in South Korea. This study is a part of Korean CHildren's ENvironmental health Study (Ko-CHENS). The following lifestyle factors: usage of personal care products, eating habits, cooking practices, food storage practices, and chemical exposure were evaluated through questionnaire. We examined prenatal EDCs: phenols (BPA), TCS, parabens (MEP, ETP, and PRP), and phthalates (MEHHP, MEOHP, MECPP, MBZP, MCOP, MCPP, MCNP, and MNBP). The random forest and least absolute shrinkage and selection operator regression machine learning models were used to predict the important lifestyle factors affecting the prenatal EDC concentrations in pregnant women. Next, we calculated the lifestyle score and evaluated its association with prenatal EDCs, respectively. Our results show that pregnant women who used makeup [β: 1.01, 95% C.I.: 0.01,2.00] >6 times/week had a significant increase in early-pregnancy (EP) ΣParaben exposure. Using perfume up to 3 times/month was significantly associated with EP TCS exposure (β: 0.05, 95% C.I.: 0.01,0.23). While, using perfume >6 times/week was significantly associated to late-pregnancy (LP) ΣParaben exposure, and consuming cup noodles significantly increased LP ΣDEHP exposure. Linear model analysis showed that the lifestyle score significantly increased the EP (β: 0.24, 95% C.I.: 0.07,0.40) and LP (β:0.10, 95% C.I.: 0.01,0.20) ΣParaben exposure. Therefore, pregnant women's lifestyle factors, such as using makeup and perfume and eating habits (e.g., cup noodle consumption), were associated with prenatal EDC exposure.
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Affiliation(s)
- Surabhi Shah
- Department of Environmental Medicine, College of Medicine, Ewha Womans University, Seoul, Republic of Korea
| | - Jongmin Oh
- Department of Environmental Medicine, College of Medicine, Ewha Womans University, Seoul, Republic of Korea; Institute of Ewha-SCL for Environmental Health (IESEH), College of Medicine, Ewha Womans University, Seoul, Republic of Korea; Department of Human Systems Medicine, College of Medicine, Seoul National University, Seoul, Republic of Korea
| | - Yoorim Bang
- Institute for Development and Human Security, Ewha Womans University, Seoul, Republic of Korea
| | - Seowoo Jung
- Department of Statistics, Ewha Womans University, Seoul, Republic of Korea
| | - Hwan-Cheol Kim
- Department of Occupational and Environmental Medicine, College of Medicine, Inha University Hospital, Inha University, Incheon, Republic of Korea
| | - Kyoung Sook Jeong
- Department of Occupational and Environmental Medicine, College of Medicine, Wonju Severance Christian Hospital, Yonsei University, Wonju, Republic of Korea
| | - Mi Hye Park
- Department of Obstetrics and Gynecology, College of Medicine, Ewha Womans University, Seoul, Republic of Korea
| | - Kyung A Lee
- Department of Obstetrics and Gynecology, College of Medicine, Ewha Womans University, Seoul, Republic of Korea
| | - Jae-Hong Ryoo
- Department of Occupational and Environmental Medicine, School of Medicine, Kyung Hee University, Seoul, Republic of Korea
| | - Yi-Jun Kim
- Department of Environmental Medicine, College of Medicine, Ewha Womans University, Seoul, Republic of Korea
| | - Sanghwan Song
- Environmental Health Research Division, National Institute of Environmental Research, Incheon, Republic of Korea
| | - Huibyeol Park
- Environmental Health Research Division, National Institute of Environmental Research, Incheon, Republic of Korea
| | - Eunhee Ha
- Department of Environmental Medicine, College of Medicine, Ewha Womans University, Seoul, Republic of Korea; Institute of Ewha-SCL for Environmental Health (IESEH), College of Medicine, Ewha Womans University, Seoul, Republic of Korea; Graduate Program in System Health Science and Engineering, College of Medicine, Ewha Womans University, Seoul, Republic of Korea.
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Sahin Demirel AN. Investigating the impact of climate variables on the organic honey yield in Turkey using XGBoost machine learning. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2025; 105:84-92. [PMID: 39120002 DOI: 10.1002/jsfa.13806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Accepted: 07/24/2024] [Indexed: 08/10/2024]
Abstract
BACKGROUND The Turkish organic honey industry, a major player in the global market, faces challenges due to climate fluctuations. Understanding the influence of climate factors on honey production is vital for sustainable farming and economic stability. METHOD This study uses a machine learning approach with the XGBoost algorithm to analyze temperature, wind, humidity, precipitation and surface pressure over a 20-year period from 2004 to 2023. RESULTS The results show that these factors significantly impact organic honey production, with temperature, wind, humidity, precipitation and surface pressure having effects of 41.20%, 26.50%, 12.47%, 11.42% and 8.41%, respectively. Sensitivity analysis reveals the model's sensitivity to even minor fluctuations in these variables. CONCLUSION The results of this research underscore the necessity of integrating climate change mitigation and adaptation measures into agricultural policies and beekeeping practices. This study showcases the practical application of machine learning in deciphering the intricate relationship between climate change and the production of crops, emphasizing the importance of data-driven decision-making to guarantee long-term sustainability and financial stability in the sector. © 2024 The Author(s). Journal of the Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Ayca Nur Sahin Demirel
- Department of Agricultural Economics, Faculty of Agriculture, Iğdur University, Iğdır, Turkey
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11
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Ma Y, Tu X, Luo X, Hu L, Wang C. Machine-learning-based cost prediction models for inpatients with mental disorders in China. BMC Psychiatry 2025; 25:33. [PMID: 39789477 PMCID: PMC11720868 DOI: 10.1186/s12888-024-06358-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/15/2024] [Accepted: 11/29/2024] [Indexed: 01/12/2025] Open
Abstract
BACKGROUND Mental disorders are increasingly prevalent, leading to increased medical expenditures. To refine the reimbursement of medical costs for inpatients with mental disorders by health insurance, an accurate prediction model is essential. Per-diem payment is a common internationally implemented payment method for medical insurance of inpatients with mental disorders, necessitating the exploration of advanced machine learning methods for predicting the average daily hospitalization costs (ADHC) based on the characteristics of inpatients with mental disorders. METHODS We used data including demographic information, clinical/functional characteristics, institutional features, and cost information of 5070 hospitalized patients with mental disorders in Jinhua, China, and employed six algorithms to predict ADHC. Performance of these six algorithms was evaluated through 5- old cross-validation combined with bootstrap method to select the most suitable algorithm and identify key factors influencing ADHC. RESULTS The random forest (RF) model demonstrated better performance (R-squared (R2) = 0.6417 (95% CI, 0.6236-0.6611), root-mean-square error (RMSE) = 0.2398 (95% CI, 0.2252-0.2553), mean-absolute error (MAE) = 0.1677 (95% CI, 0.1626-0.1735), mean-absolute-percentage error (MAPE) = 0.0295 (95% CI, 0.0287-0.0304)). According to feature importance ranking, models incorporating top 11 factors (> 0.01) demonstrated comparable performance to those encompassing all variables. Top four factors (> 0.05) were level of medical institution, age, functional classification, and cognitive classification. Notably, level of medical institutions was the most significant factor across all primary models. Higher medical institutions level, patients below 20 and above 75 years old, lower functional classification, and lower cognitive classification are associated with increased ADHC. CONCLUSIONS Machine learning algorithms, particularly RF algorithm, enhance accuracy of predicting ADHC for mental health patients. The findings of this study provide evidence for setting up more reasonable insurance payment standards for inpatients with mental disorders and support resource allocation in clinical practice.
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Affiliation(s)
- Yuxuan Ma
- School of Health Policy and Management, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Xi Tu
- School of Health Policy and Management, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | | | - Linlin Hu
- School of Health Policy and Management, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.
| | - Chen Wang
- Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.
- National Clinical Research Center for Respiratory Diseases, Beijing, China.
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Wang W, Xia J, Shen Y, Qiao C, Liu M, Cheng X, Mu S, Yan W, Lu W, Gao S, Zhou K. Potential diagnostic biomarkers in heart failure: Suppressed immune-associated genes identified by bioinformatic analysis and machine learning. Eur J Pharmacol 2025; 986:177153. [PMID: 39586393 DOI: 10.1016/j.ejphar.2024.177153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2024] [Revised: 11/21/2024] [Accepted: 11/22/2024] [Indexed: 11/27/2024]
Abstract
Heart failure (HF) threatens tens of millions of people's health worldwide, which is the terminal stage in the development of majority cardiovascular diseases. Recently, an increasing number of studies have demonstrated that bioinformatics and machine learning (ML) algorithms can offer new insights into the diagnosing and treating HF. To further discover HF diagnostic genes, we utilized least absolute shrinkage and selection operator (LASSO) and Support Vector Machine (SVM) to identify novel immune-related genes. The HF dataset was obtained from the gene expression omnibus (GEO) database and three candidate genes (LCN6, MUC4, and TNFRSF13C) were finally screened. In addition, the myocardial infarction (MI) modeling experiments on mice were performed to validate the expression of LCN6, MUC4, and TNFRSF13C on experimental HF mice. Altogether, these three candidate genes are promising targets for the prediction of HF with immunological perspective.
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Affiliation(s)
- Wanrong Wang
- Department of Pharmacology, School of Basic Medical Sciences, Anhui Medical University, Hefei, 230032, China; Department of Respiratory and Critical Care Medicine, The First Affiliated Hospital of Anhui Medical University, Hefei, 230032, China
| | - Jie Xia
- Department of Pharmacology, School of Basic Medical Sciences, Anhui Medical University, Hefei, 230032, China
| | - Yu Shen
- Department of Pharmacology, School of Basic Medical Sciences, Anhui Medical University, Hefei, 230032, China
| | - Chuncan Qiao
- Department of Pharmacology, School of Basic Medical Sciences, Anhui Medical University, Hefei, 230032, China
| | - Mengyan Liu
- Department of Pharmacology, School of Basic Medical Sciences, Anhui Medical University, Hefei, 230032, China
| | - Xin Cheng
- Department of Pharmacology, School of Basic Medical Sciences, Anhui Medical University, Hefei, 230032, China
| | - Siqi Mu
- First Clinical Medical College, Anhui Medical University, Hefei, 230032, China
| | - Weizhen Yan
- Department of Oncology, Xiangya Hospital of Central South University, Changsha, 410008, China
| | - Wenjie Lu
- Department of Pharmacology, School of Basic Medical Sciences, Anhui Medical University, Hefei, 230032, China.
| | - Shan Gao
- Department of Pharmacology, School of Basic Medical Sciences, Anhui Medical University, Hefei, 230032, China.
| | - Kai Zhou
- Department of Pharmacology, School of Basic Medical Sciences, Anhui Medical University, Hefei, 230032, China; The Second Affiliated Hospital of Anhui Medical University, Hefei, 230032, China.
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Garcia JA, Bouchnita A. Exploring the spatial effects influencing the EGFR/ERK pathway dynamics with machine learning surrogate models. Biosystems 2025; 247:105360. [PMID: 39521268 DOI: 10.1016/j.biosystems.2024.105360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 09/15/2024] [Accepted: 10/30/2024] [Indexed: 11/16/2024]
Abstract
The fate of cells is regulated by biochemical reactions taking place inside of them, known as intracellular pathways. Cells display a variety of characteristics related to their shape, structure and contained fluid, which influences the diffusion of proteins and their interactions. To gain insights into the spatial effects shaping intracellular regulation, we apply machine learning (ML) to explore a previously developed spatial model of the epidermal growth factor receptor (EGFR) signaling. The model describes the reactions between molecular species inside of cells following the transient activation of EGF receptors. To train our ML models, we conduct 10,000 numerical simulations in parallel where we calculate the cumulative activation of molecules and transcription factors under various conditions such as different diffusion speeds, inactivation rates, and cell structures. We take advantage of the low computational cost of ML algorithms to investigate the effects of cell and nucleus sizes, the diffusion speed of proteins, and the inactivation rate of the Ras molecules on the activation strength of transcription factors. Our results suggest that the predictions by both neural networks and random forests yielded minimal mean square error (MSEs), while linear generalized models displayed a significantly larger MSE. The exploration of the surrogate models has shown that smaller cell and nucleus radii as well, larger diffusion coefficients, and reduced inactivation rates increase the activation of transcription factors. These results are confirmed by numerical simulations. Our ML algorithms can be readily incorporated within multiscale models of tumor growth to embed the spatial effects regulating intracellular pathways, enabling the use of complex cell models within multiscale models while reducing the computational cost.
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Affiliation(s)
- Juan A Garcia
- Department of Mathematical Sciences, The University of Texas at El Paso, El Paso 79968, TX, USA
| | - Anass Bouchnita
- Department of Mathematical Sciences, The University of Texas at El Paso, El Paso 79968, TX, USA.
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14
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Yang M, Zhang H, Yu M, Xu Y, Xiang B, Yao X. Auxiliary identification of depression patients using interpretable machine learning models based on heart rate variability: a retrospective study. BMC Psychiatry 2024; 24:914. [PMID: 39695446 DOI: 10.1186/s12888-024-06384-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/10/2024] [Accepted: 12/06/2024] [Indexed: 12/20/2024] Open
Abstract
OBJECTIVE Depression has emerged as a global public health concern with high incidence and disability rates, which are timely imperative to identify and intervene in clinical practice. The objective of this study was to explore the association between heart rate variability (HRV) and depression, with the aim of establishing and validating machine learning models for the auxiliary diagnosis of depression. METHODS The data of 465 outpatients from the Affiliated Hospital of Southwest Medical University were selected for the study. The study population was then randomly divided into training and test sets in a 7:3 ratio. Logistic regression (LR), support vector machine (SVM), random forest (RF) and eXtreme gradient boosting (XGBoost) algorithm models were used to construct risk prediction models in the training set, and the model performance was verified in the test set. The four models were evaluated by the area under the receiver operating characteristic curve (ROC), calibration curve and the decision curve analysis (DCA). Furthermore, we employed the SHapley Additive exPlanations (SHAP) method to illustrate the effects of the features attributed to the model. RESULTS There were 237 people in the depressed group and 228 in the non-depressed group. In the training set (n = 325) and test set (n = 140), the area under of the curve(AUC) values of the XGBoost model are 0.92 [95% confidence interval (CI) 0.888,0.95] and 0.82 (95% CI 0.754,0.892)] respectively, which are higher than the other three models. The XGBoost model has excellent predictive efficacy and clinical utility. The SHAP method was ranked according to the importance of the degree of influence on the model, with age, heart rate, Standard deviation of the NN intervals (SDNN), two nonlinear parameters of HRV and sex considered to be the top 6 predictors. CONCLUSION We provided a feasibility study of HRV as a potential biomarker for depression. The proposed model based on HRV provides clinicians with a quantitative auxiliary diagnostic tool, which is assist to improving the accuracy and efficiency of depression diagnosis, and can also be utilized for the monitoring and prevention of depression.
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Affiliation(s)
- Min Yang
- School of Public Health, Southwest Medical University, No.1 Section 1, Xiang Lin Road, Longmatan District, Luzhou, 646000, P. R. China
| | - Huiqin Zhang
- School of Public Health, Southwest Medical University, No.1 Section 1, Xiang Lin Road, Longmatan District, Luzhou, 646000, P. R. China
| | - Minglan Yu
- Institute of cardiovascular research, Southwest Medical University, No.1 Section 1, Xiang Lin Road, Longmatan District, Luzhou, 646000, P. R. China
- Medical Laboratory Center, Affiliated Hospital of Southwest Medical University, 25 Taiping Street, Luzhou, 646000, P. R. China
| | - Yunxuan Xu
- School of Computer Science and Technology, Southwest University of Science and Technology, 59 Qinglong Road, Mianyang, 621010, P.R. China
| | - Bo Xiang
- Department of Psychiatry, Fundamental and Clinical Research on Mental Disorders Key Laboratory of Luzhou, Medical Laboratory Center, Laboratory of Neurological Diseases & Brain Function, Affiliated Hospital of Southwest Medical University, 25 Taiping Street, Luzhou, 646000, P. R. China.
| | - Xiaopeng Yao
- School of Medical Information and Engineering, Southwest Medical University, No.1 Section 1, Xiang Lin Road, Longmatan District, Luzhou, 646000, P. R. China.
- Central Nervous System Drug Key Laboratory of Sichuan Province, Southwest Medical University, No.1 Section 1, Xiang Lin Road, Longmatan District, Luzhou, 646000, P.R. China.
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Li HM, Zheng JX, Midzi N, Mutsaka- Makuvaza MJ, Lv S, Xia S, Qian YJ, Xiao N, Berguist R, Zhou XN. Schistosomiasis transmission in Zimbabwe: Modelling based on machine learning. Infect Dis Model 2024; 9:1081-1094. [PMID: 38988829 PMCID: PMC11233785 DOI: 10.1016/j.idm.2024.06.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Revised: 06/02/2024] [Accepted: 06/08/2024] [Indexed: 07/12/2024] Open
Abstract
Zimbabwe, located in Southern Africa, faces a significant public health challenge due to schistosomiasis. We investigated this issue with emphasis on risk prediction of schistosomiasis for the entire population. To this end, we reviewed available data on schistosomiasis in Zimbabwe from a literature search covering the 1980-2022 period considering the potential impact of 26 environmental and socioeconomic variables obtained from public sources. We studied the population requiring praziquantel with regard to whether or not mass drug administration (MDA) had been regularly applied. Three machine-learning algorithms were tested for their ability to predict the prevalence of schistosomiasis in Zimbabwe based on the mean absolute error (MAE), the root mean squared error (RMSE) and the coefficient of determination (R2). The findings revealed different roles of the 26 factors with respect to transmission and there were particular variations between Schistosoma haematobium and S. mansoni infections. We found that the top-five correlation factors, such as the past (rather than current) time, unsettled MDA implementation, constrained economy, high rainfall during the warmest season, and high annual precipitation were closely associated with higher S. haematobium prevalence, while lower elevation, high rainfall during the warmest season, steeper slope, past (rather than current) time, and higher minimum temperature in the coldest month were rather related to higher S. mansoni prevalence. The random forest (RF) algorithm was considered as the formal best model construction method, with MAE = 0.108; RMSE = 0.143; and R2 = 0.517 for S. haematobium, and with the corresponding figures for S. mansoni being 0.053; 0.082; and 0.458. Based on this optimal model, the current total schistosomiasis prevalence in Zimbabwe under MDA implementation was 19.8%, with that of S. haematobium at 13.8% and that of S. mansoni at 7.1%, requiring annual MDA based on a population of 3,003,928. Without MDA, the current total schistosomiasis prevalence would be 23.2%, that of S. haematobium 17.1% and that of S. mansoni prevalence at 7.4%, requiring annual MDA based on a population of 3,521,466. The study reveals that MDA alone is insufficient for schistosomiasis elimination, especially that due to S. mansoni. This study predicts a moderate prevalence of schistosomiasis in Zimbabwe, with its elimination requiring comprehensive control measures beyond the currently used strategies, including health education, snail control, population surveillance and environmental management.
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Affiliation(s)
- Hong-Mei Li
- National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention (Chinese Center for Tropical Diseases Research), NHC Key Laboratory of Parasite and Vector Biology, WHO Collaborating Centre for Tropical Diseases, National Center for International Research on Tropical Diseases, Shanghai, 200025, China
| | - Jin-Xin Zheng
- National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention (Chinese Center for Tropical Diseases Research), NHC Key Laboratory of Parasite and Vector Biology, WHO Collaborating Centre for Tropical Diseases, National Center for International Research on Tropical Diseases, Shanghai, 200025, China
| | - Nicholas Midzi
- National Institute of Health Research, Ministry of Health and Child Care, Harare, Zimbabwe
| | - Masceline Jenipher Mutsaka- Makuvaza
- National Institute of Health Research, Ministry of Health and Child Care, Harare, Zimbabwe
- University of Rwanda, College of Medicine and Health Sciences, School of Medicine and Pharmacy, Department of Microbiology and Parasitology, Rwanda
| | - Shan Lv
- National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention (Chinese Center for Tropical Diseases Research), NHC Key Laboratory of Parasite and Vector Biology, WHO Collaborating Centre for Tropical Diseases, National Center for International Research on Tropical Diseases, Shanghai, 200025, China
| | - Shang Xia
- National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention (Chinese Center for Tropical Diseases Research), NHC Key Laboratory of Parasite and Vector Biology, WHO Collaborating Centre for Tropical Diseases, National Center for International Research on Tropical Diseases, Shanghai, 200025, China
| | - Ying-jun Qian
- National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention (Chinese Center for Tropical Diseases Research), NHC Key Laboratory of Parasite and Vector Biology, WHO Collaborating Centre for Tropical Diseases, National Center for International Research on Tropical Diseases, Shanghai, 200025, China
| | - Ning Xiao
- National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention (Chinese Center for Tropical Diseases Research), NHC Key Laboratory of Parasite and Vector Biology, WHO Collaborating Centre for Tropical Diseases, National Center for International Research on Tropical Diseases, Shanghai, 200025, China
| | | | - Xiao-Nong Zhou
- National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention (Chinese Center for Tropical Diseases Research), NHC Key Laboratory of Parasite and Vector Biology, WHO Collaborating Centre for Tropical Diseases, National Center for International Research on Tropical Diseases, Shanghai, 200025, China
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16
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Zhao A, Liu Y, Xia J, Huang L, Lu Q, Tang Q, Gan W. Establishment and validation of a prognostic model based on common laboratory indicators for SARS-CoV-2 infection in Chinese population. Ann Med 2024; 56:2400312. [PMID: 39239874 PMCID: PMC11382706 DOI: 10.1080/07853890.2024.2400312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 04/23/2024] [Accepted: 04/23/2024] [Indexed: 09/07/2024] Open
Abstract
BACKGROUND At the beginning of December 2022, the Chinese government made major adjustments to the epidemic prevention and control measures. The epidemic infection data and laboratory makers for infected patients based on this period may help with the management and prognostication of COVID-19 patients. METHODS The COVID-19 patients hospitalized during December 2022 were enrolled. Logistic regression analysis was used to screen significant factors associated with mortality in patients with COVID-19. Candidate variables were screened by LASSO and stepwise logistic regression methods and were used to construct logistic regression as the prognostic model. The performance of the models was evaluated by discrimination, calibration, and net benefit. RESULTS 888 patients were eligible, consisting of 715 survivors and 173 all-cause deaths. Factors significantly associated with mortality in COVID-19 patients were: lactate dehydrogenase (LDH), albumin (ALB), procalcitonin (PCT), age, smoking history, malignancy history, high density lipoprotein cholesterol (HDL-C), lactate, vaccine status and urea. 335 of the 888 eligible patients were defined as ICU cases. Seven predictors, including neutrophil to lymphocyte ratio, D-dimer, PCT, C-reactive protein, ALB, bicarbonate, and LDH, were finally selected to establish the prognostic model and generate a nomogram. The area under the curve of the receiver operating curve in the training and validation cohorts were respectively 0.842 and 0.853. In terms of calibration, predicted probabilities and observed proportions displayed high agreements. Decision curve analysis showed high clinical net benefit in the risk threshold of 0.10-0.85. A cutoff value of 81.220 was determined to predict the outcome of COVID-19 patients via this nomogram. CONCLUSIONS The laboratory model established in this study showed high discrimination, calibration, and net benefit. It may be used for early identification of severe patients with COVID-19.
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Affiliation(s)
- Anjiang Zhao
- Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu, China
- Sichuan Clinical Research Center for Laboratory Medicine, Chengdu, China
- Clinical Laboratory Medicine Research Center of West China Hospital, Chengdu, China
| | - Yanyang Liu
- Department of Medical Oncology, Cancer Center, West China Hospital, Sichuan University, Chengdu, China
- Lung Cancer Center, West China Hospital, Sichuan University, Chengdu, China
| | - Junxiang Xia
- Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu, China
- Department of Laboratory Medicine, Sichuan Province Orthopedic Hospital, Chengdu, China
| | - Lan Huang
- Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu, China
- Department of Clinical Laboratory, Affiliated Hospital of Panzhihua University, Panzhihua, China
| | - Qing Lu
- Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu, China
- Department of Clinical Laboratory, Guangnan County People's Hospital, Wenshan, China
| | - Qin Tang
- Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu, China
- Department of Clinical Laboratory, Yuechi County Hospital of Traditional Chinese Medicine, Guangan, Sichuan, China
| | - Wei Gan
- Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu, China
- Sichuan Clinical Research Center for Laboratory Medicine, Chengdu, China
- Clinical Laboratory Medicine Research Center of West China Hospital, Chengdu, China
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17
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Fang J, Song B, Li L, Tong L, Jiang M, Yan J. RGX Ensemble Model for Advanced Prediction of Mortality Outcomes in Stroke Patients. BME FRONTIERS 2024; 5:0077. [PMID: 39600589 PMCID: PMC11588983 DOI: 10.34133/bmef.0077] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Revised: 10/08/2024] [Accepted: 11/06/2024] [Indexed: 11/29/2024] Open
Abstract
Objective: This paper aims to address the clinical challenge of predicting the outcomes of stroke patients and proposes a comprehensive model called RGX to help clinicians adopt more personalized treatment plans. Impact Statement: The comprehensive model is first proposed and applied to clinical datasets with missing data. The introduction of the Shapley additive explanations (SHAP) model to explain the impact of patient indicators on prognosis improves the accuracy of stroke patient mortality prediction. Introduction: At present, the prediction of stroke treatment outcomes faces many challenges, including the lack of models to quantify which clinical variables are closely related to patient survival. Methods: We developed a series of machine learning models to systematically predict the mortality of stroke patients. Additionally, by introducing the SHAP model, we revealed the contribution of risk factors to the prediction results. The performance of the models was evaluated using multiple metrics, including the area under the curve, accuracy, and specificity, to comprehensively measure the effectiveness and stability of the models. Results: The RGX model achieved an accuracy of 92.18% on the complete dataset, an improvement of 11.38% compared to that of the most advanced state-of-the-art model. Most importantly, the RGX model maintained excellent predictive ability even when faced with a dataset containing a large number of missing values, achieving an accuracy of 84.62%. Conclusion: In summary, the RGX ensemble model not only provides clinicians with a highly accurate predictive tool but also promotes the understanding of stroke patient survival prediction, laying a solid foundation for the development of precision medicine.
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Affiliation(s)
- Jing Fang
- Faculty of Information Science and Technology,
Beijing University of Technology, Beijing 100020, China
| | - Baoying Song
- Department of Neurology, Xuanwu Hospital,
Capital Medical University, Beijing, China
| | - Lingli Li
- Faculty of Information Science and Technology,
Beijing University of Technology, Beijing 100020, China
| | - Linfeng Tong
- Faculty of Information Science and Technology,
Beijing University of Technology, Beijing 100020, China
| | - Miaowen Jiang
- The Beijing Institute for Brain Disorders,
Capital Medical University, Beijing 100069, China
| | - Jianzhuo Yan
- Faculty of Information Science and Technology,
Beijing University of Technology, Beijing 100020, China
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18
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Meng Y, Xu Q, Chen G, Liu J, Zhou S, Zhang Y, Wang A, Wang J, Yan D, Cai X, Li J, Chen X, Li Q, Zeng Q, Guo W, Wang Y. Regression prediction of tobacco chemical components during curing based on color quantification and machine learning. Sci Rep 2024; 14:27080. [PMID: 39511398 PMCID: PMC11543802 DOI: 10.1038/s41598-024-78426-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Accepted: 10/30/2024] [Indexed: 11/15/2024] Open
Abstract
Color is one of the most important indicators to characteristic the quality of tobacco, which is strongly related to the variations of chemical components. In order to clarify the relationship between the changes of tobacco color and chemical components, here we established several prediction models of chemical components with the color values of tobacco based on machine learning algorithms. The results of correlation analysis showed that tobacco moisture content was highly significantly correlated with the parameters such as a*, H* and H°, the reducing sugar and total sugar content of tobacco was significantly correlated with the color values, and the starch content was highly significantly correlated with the color values except for b* and C*. The random forest models performed best in predicting tobacco moisture, reducing sugar, total sugar and starch constructed with the R2 of the model validation set was higher than 0.90, and the RPD value was greater than 2.0. The consistent between the predictions and measurements verified the availability and feasibility using color values to predict some chemical components of the tobacco leaves with high accuracy, and which has distinct advantages and potential application to realize the real-time monitoring of some chemical components in the tobacco curing process.
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Affiliation(s)
- Yang Meng
- Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China
| | - Qiang Xu
- Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China
| | - Guangqing Chen
- Henan Provincial Tobacco Company, Zhengzhou, 450001, China
| | - Jianjun Liu
- Henan Provincial Tobacco Company, Zhengzhou, 450001, China
| | - Shuoye Zhou
- Henan Provincial Tobacco Company, Zhengzhou, 450001, China
| | - Yanling Zhang
- Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China
| | - Aiguo Wang
- Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China
| | - Jianwei Wang
- Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China
| | - Ding Yan
- Shanghai Tobacco Company, 200000, Shanghai, China
| | - Xianjie Cai
- Shanghai Tobacco Company, 200000, Shanghai, China
| | - Junying Li
- Pingdingshan Branch of Henan Provincial Tobacco Company, Henan, 467000, China
| | - Xuchu Chen
- Pingdingshan Branch of Henan Provincial Tobacco Company, Henan, 467000, China
| | - Qiuying Li
- Nanping Branch of Fujian Provincial Tobacco Company, Nanping, 353000, China
| | - Qiang Zeng
- Nanping Branch of Fujian Provincial Tobacco Company, Nanping, 353000, China
| | - Weimin Guo
- Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China.
- , No. 2 Fengyang Street, Zhengzhou, China.
- Tobacco Research Institute of CNTC, Zhengzhou, 450001, China.
| | - Yuanhui Wang
- College of Food Science and Engineering, Henan University of Technology, Zhengzhou, 450001, China.
- , No. 2 Fengyang Street, Zhengzhou, China.
- Tobacco Research Institute of CNTC, Zhengzhou, 450001, China.
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Halvorson BD, Ward AD, Murrell D, Lacefield JC, Wiseman RW, Goldman D, Frisbee JC. Regulation of Skeletal Muscle Resistance Arteriolar Tone: Temporal Variability in Vascular Responses. J Vasc Res 2024; 61:269-297. [PMID: 39362208 DOI: 10.1159/000541169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2024] [Accepted: 08/25/2024] [Indexed: 10/05/2024] Open
Abstract
INTRODUCTION A full understanding of the integration of the mechanisms of vascular tone regulation requires an interrogation of the temporal behavior of arterioles across vasoactive challenges. Building on previous work, the purpose of the present study was to start to interrogate the temporal nature of arteriolar tone regulation with physiological stimuli. METHODS We determined the response rate of ex vivo proximal and in situ distal resistance arterioles when challenged by one-, two-, and three-parameter combinations of five major physiological stimuli (norepinephrine, intravascular pressure, oxygen, adenosine [metabolism], and intralumenal flow). Predictive machine learning models determined which factors were most influential in controlling the rate of arteriolar responses. RESULTS Results indicate that vascular response rate is dependent on the intensity of the stimulus used and can be severely hindered by altered environments, caused by application of secondary or tertiary stimuli. Advanced analytics suggest that adrenergic influences were dominant in predicting proximal arteriolar response rate compared to metabolic influences in distal arterioles. CONCLUSION These data suggest that the vascular response rate to physiologic stimuli can be strongly influenced by the local environment. Translating how these effects impact vascular networks is imperative for understanding how the microcirculation appropriately perfuses tissue across conditions.
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Affiliation(s)
- Brayden D Halvorson
- Departments of Medical Biophysics, Schulich School of Medicine and Dentistry, University of Western Ontario, London, Ontario, Canada
| | - Aaron D Ward
- Departments of Medical Biophysics, Schulich School of Medicine and Dentistry, University of Western Ontario, London, Ontario, Canada
- Departments of Oncology, University of Western Ontario, London, Ontario, Canada
| | - Donna Murrell
- Departments of Medical Biophysics, Schulich School of Medicine and Dentistry, University of Western Ontario, London, Ontario, Canada
- Departments of Oncology, University of Western Ontario, London, Ontario, Canada
| | - James C Lacefield
- Departments of Medical Biophysics, Schulich School of Medicine and Dentistry, University of Western Ontario, London, Ontario, Canada
- School of Biomedical Engineering, University of Western Ontario, London, Ontario, Canada
| | - Robert W Wiseman
- Departments of Physiology and Radiology, Michigan State University, East Lansing, Michigan, USA
| | - Daniel Goldman
- Departments of Medical Biophysics, Schulich School of Medicine and Dentistry, University of Western Ontario, London, Ontario, Canada
| | - Jefferson C Frisbee
- Departments of Medical Biophysics, Schulich School of Medicine and Dentistry, University of Western Ontario, London, Ontario, Canada
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20
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Grimm T, Branch A, Thompson KA, Salveson A, Zhao J, Johnson D, Hering AS, Newhart KB. Long-Term Statistical Process Monitoring of an Ultrafiltration Water Treatment Process. ACS ES&T ENGINEERING 2024; 4:1492-1506. [PMID: 38899163 PMCID: PMC11184555 DOI: 10.1021/acsestengg.4c00042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Revised: 05/20/2024] [Accepted: 05/21/2024] [Indexed: 06/21/2024]
Abstract
As water treatment technology has improved, the amount of available process data has substantially increased, making real-time, data-driven fault detection a reality. One shortcoming of the fault detection literature is that methods are usually evaluated by comparing their performance on hand-picked, short-term case studies, which yields no insight into long-term performance. In this work, we first evaluate multiple statistical and machine learning approaches for detrending process data. Then, we evaluate the performance of a PCA-based fault detection approach, applied to the detrended data, to monitor influent water quality, filtrate quality, and membrane fouling of an ultrafiltration membrane system for indirect potable reuse. Based on two short case studies, the adaptive lasso detrending method is selected, and the performance of the multivariate approach is evaluated over more than a year. The method is tested for different sets of three critical tuning parameters, and we find that for long-term, autonomous monitoring to be successful, these parameters should be carefully evaluated. However, in comparison with industry standards of simpler, univariate monitoring or daily pressure decay tests, multivariate monitoring produces substantial benefits in long-term testing.
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Affiliation(s)
- Taylor
R. Grimm
- Department
of Statistical Science, Baylor University, Waco, Texas 76798, United States
| | - Amos Branch
- Carollo
Engineers, Inc., Walnut Creek, California 94598, United States
| | - Kyle A. Thompson
- Carollo
Engineers, Inc., Walnut Creek, California 94598, United States
| | - Andrew Salveson
- Carollo
Engineers, Inc., Walnut Creek, California 94598, United States
| | - John Zhao
- Las
Virgenes Municipal Water District, Calabasas, California 91302, United States
| | - Darrell Johnson
- Las
Virgenes Municipal Water District, Calabasas, California 91302, United States
| | - Amanda S. Hering
- Department
of Statistical Science, Baylor University, Waco, Texas 76798, United States
| | - Kathryn B. Newhart
- Department
of Geography and Environmental Engineering, United States Military Academy, West Point, New York 10996, United States
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21
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Jiang S, Li B, Yang Z, Li Y, Zhou Z. A back propagation neural network based respiratory motion modelling method. Int J Med Robot 2024; 20:e2647. [PMID: 38804195 DOI: 10.1002/rcs.2647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 05/14/2024] [Accepted: 05/17/2024] [Indexed: 05/29/2024]
Abstract
BACKGROUND This study presents the development of a backpropagation neural network-based respiratory motion modelling method (BP-RMM) for precisely tracking arbitrary points within lung tissue throughout free respiration, encompassing deep inspiration and expiration phases. METHODS Internal and external respiratory data from four-dimensional computed tomography (4DCT) are processed using various artificial intelligence algorithms. Data augmentation through polynomial interpolation is employed to enhance dataset robustness. A BP neural network is then constructed to comprehensively track lung tissue movement. RESULTS The BP-RMM demonstrates promising accuracy. In cases from the public 4DCT dataset, the average target registration error (TRE) between authentic deep respiration phases and those forecasted by BP-RMM for 75 marked points is 1.819 mm. Notably, TRE for normal respiration phases is significantly lower, with a minimum error of 0.511 mm. CONCLUSIONS The proposed method is validated for its high accuracy and robustness, establishing it as a promising tool for surgical navigation within the lung.
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Affiliation(s)
- Shan Jiang
- School of Mechanical Engineering, Tianjin University, Tianjin, China
| | - Bowen Li
- School of Mechanical Engineering, Tianjin University, Tianjin, China
| | - Zhiyong Yang
- School of Mechanical Engineering, Tianjin University, Tianjin, China
| | - Yuhua Li
- School of Mechanical Engineering, Tianjin University, Tianjin, China
| | - Zeyang Zhou
- School of Mechanical Engineering, Tianjin University, Tianjin, China
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22
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Hooda S, Mondal P. Predictive modeling of plastic pyrolysis process for the evaluation of activation energy: Explainable artificial intelligence based comprehensive insights. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 360:121189. [PMID: 38759553 DOI: 10.1016/j.jenvman.2024.121189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Revised: 04/30/2024] [Accepted: 05/13/2024] [Indexed: 05/19/2024]
Abstract
Pyrolysis, a thermochemical conversion approach of transforming plastic waste to energy has tremendous potential to manage the exponentially increasing plastic waste. However, understanding the process kinetics is fundamental to engineering a sustainable process. Conventional analysis techniques do not provide insights into the influence of characteristics of feedstock on the process kinetics. Present study exemplifies the efficacy of using machine learning for predictive modeling of pyrolysis of waste plastics to understand the complexities of the interrelations of predictor variables and their influence on activation energy. The activation energy for pyrolysis of waste plastics was evaluated using machine learning models namely Random Forest, XGBoost, CatBoost, and AdaBoost regression models. Feature selection based on the multicollinearity of data and hyperparameter tuning of the models utilizing RandomizedSearchCV was conducted. Random forest model outperformed the other models with coefficient of determination (R2) value of 0.941, root mean square error (RMSE) value of 14.69 and mean absolute error (MAE) value of 8.66 for the testing dataset. The explainable artificial intelligence-based feature importance plot and the summary plot of the shapely additive explanations projected fixed carbon content, ash content, conversion value, and carbon content as significant parameters of the model in the order; fixed carbon > carbon > ash content > degree of conversion. Present study highlighted the potential of machine learning as a powerful tool to understand the influence of the characteristics of plastic waste and the degree of conversion on the activation energy of a process that is essential for designing the large-scale operations and future scale-up of the process.
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Affiliation(s)
- Sanjeevani Hooda
- Department of Chemical Engineering, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand, 247667, India
| | - Prasenjit Mondal
- Department of Chemical Engineering, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand, 247667, India.
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Mao Y, Hu Z, Li H, Zheng H, Yang S, Yu W, Tang B, Yang H, He R, Guo W, Ye K, Yang A, Zhang S. Recent advances in microplastic removal from drinking water by coagulation: Removal mechanisms and influencing factors. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 349:123863. [PMID: 38565391 DOI: 10.1016/j.envpol.2024.123863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 02/26/2024] [Accepted: 03/23/2024] [Indexed: 04/04/2024]
Abstract
Microplastics (MPs) are emerging contaminants that are widely detected in drinking water and pose a potential risk to humans. Therefore, the MP removal from drinking water is a critical challenge. Recent studies have shown that MPs can be removed by coagulation. However, the coagulation removal of MPs from drinking water remains inadequately understood. Herein, the efficiency, mechanisms, and influencing factors of coagulation for removing MPs from drinking water are critically reviewed. First, the efficiency of MP removal by coagulation in drinking water treatment plants (DWTPs) and laboratories was comprehensively summarized, which indicated that coagulation plays an important role in MP removal from drinking water. The difference in removal effectiveness between the DWTPs and laboratory was mainly due to variations in treatment conditions and limitations of the detection techniques. Several dominant coagulation mechanisms for removing MPs and their research methods are thoroughly discussed. Charge neutralization is more relevant for small-sized MPs, whereas large-sized MPs are more dependent on adsorption bridging and sweeping. Furthermore, the factors influencing the efficiency of MP removal were jointly analyzed using meta-analysis and a random forest model. The meta-analysis was used to quantify the individual effects of each factor on coagulation removal efficiency by performing subgroup analysis. The random forest model quantified the relative importance of the influencing factors on removal efficiency, the results of which were ordered as follows: MPs shape > Coagulant type > Coagulant dosage > MPs concentration > MPs size > MPs type > pH. Finally, knowledge gaps and potential future directions are proposed. This review assists in the understanding of the coagulation removal of MPs, and provides novel insight into the challenges posed by MPs in drinking water.
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Affiliation(s)
- Yufeng Mao
- Key Laboratory of Hydraulic and Waterway Engineering, Ministry of Education, Chongqing Jiaotong University, Chongqing, 400074, China; Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing, 400044, China
| | - Zuoyuan Hu
- Key Laboratory of Hydraulic and Waterway Engineering, Ministry of Education, Chongqing Jiaotong University, Chongqing, 400074, China
| | - Hong Li
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing, 400044, China
| | - Huaili Zheng
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing, 400044, China
| | - Shengfa Yang
- Key Laboratory of Hydraulic and Waterway Engineering, Ministry of Education, Chongqing Jiaotong University, Chongqing, 400074, China
| | - Weiwei Yu
- Key Laboratory of Hydraulic and Waterway Engineering, Ministry of Education, Chongqing Jiaotong University, Chongqing, 400074, China
| | - Bingran Tang
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing, 400044, China
| | - Hao Yang
- Key Laboratory of Hydraulic and Waterway Engineering, Ministry of Education, Chongqing Jiaotong University, Chongqing, 400074, China
| | - Ruixu He
- Key Laboratory of Hydraulic and Waterway Engineering, Ministry of Education, Chongqing Jiaotong University, Chongqing, 400074, China
| | - Wenshu Guo
- Key Laboratory of Hydraulic and Waterway Engineering, Ministry of Education, Chongqing Jiaotong University, Chongqing, 400074, China
| | - Kailai Ye
- Key Laboratory of Hydraulic and Waterway Engineering, Ministry of Education, Chongqing Jiaotong University, Chongqing, 400074, China
| | - Aoguang Yang
- Key Laboratory of Hydraulic and Waterway Engineering, Ministry of Education, Chongqing Jiaotong University, Chongqing, 400074, China
| | - Shixin Zhang
- Key Laboratory of Hydraulic and Waterway Engineering, Ministry of Education, Chongqing Jiaotong University, Chongqing, 400074, China.
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Grdinic AG, Radovanovic S, Gleditsch J, Jørgensen CT, Asady E, Pettersen HH, Delibasic B, Ghanima W. Developing a machine learning model for bleeding prediction in patients with cancer-associated thrombosis receiving anticoagulation therapy. J Thromb Haemost 2024; 22:1094-1104. [PMID: 38184201 DOI: 10.1016/j.jtha.2023.12.034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 12/07/2023] [Accepted: 12/12/2023] [Indexed: 01/08/2024]
Abstract
BACKGROUND Only 1 conventional score is available for assessing bleeding risk in patients with cancer-associated thrombosis (CAT): the CAT-BLEED score. OBJECTIVES Our aim was to develop a machine learning-based risk assessment model for predicting bleeding in CAT and to evaluate its predictive performance in comparison to that of the CAT-BLEED score. METHODS We collected 488 attributes (clinical data, biochemistry, and International Classification of Diseases, 10th Revision, diagnosis) in 1080 unique patients with CAT. We compared CAT-BLEED score, Ridge and Lasso logistic regression, random forest, and Extreme Gradient Boosting (XGBoost) algorithms for predicting major bleeding or clinically relevant nonmajor bleeding occurring 1 to 90 days, 1 to 365 days, and 90 to 455 days after venous thromboembolism (VTE). RESULTS The predictive performances of Lasso logistic regression, random forest, and XGBoost were higher than that of the CAT-BLEED score in the prediction of bleeding occurring 1 to 90 days and 1 to 365 days after VTE. For predicting major bleeding or clinically relevant nonmajor bleeding 1 to 90 days after VTE, the CAT-BLEED score achieved a mean area under the receiver operating characteristic curve (AUROC) of 0.48 ± 0.13, while Lasso logistic regression and XGBoost both achieved AUROCs of 0.64 ± 0.12. For predicting bleeding 1 to 365 days after VTE, the CAT-BLEED score achieved a mean AUROC of 0.47 ± 0.08, while Lasso logistic regression and XGBoost achieved AUROCs of 0.64 ± 0.08 and 0.59 ± 0.08, respectively. CONCLUSION This is the first machine learning-based risk model for bleeding prediction in patients with CAT receiving anticoagulation therapy. Its predictive performance was higher than that of the conventional CAT-BLEED score. With further development, this novel algorithm might enable clinicians to perform personalized anticoagulation strategies with improved clinical outcomes.
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Affiliation(s)
- Aleksandra G Grdinic
- Department of Cardiology, Østfold Hospital, Sarpsborg, Norway; Department of Research, Østfold Hospital, Sarpsborg, Norway.
| | - Sandro Radovanovic
- Faculty of Organizational Sciences, University of Belgrade, Belgrade, Serbia
| | - Jostein Gleditsch
- Department of Radiology, Østfold Hospital, Sarpsborg, Norway; Institute of Clinical Medicine, University of Oslo, Oslo, Norway
| | - Camilla Tøvik Jørgensen
- Institute of Clinical Medicine, University of Oslo, Oslo, Norway; Department of Emergency Medicine, Østfold Hospital, Sarpsborg, Norway
| | - Elia Asady
- Department of Research, Østfold Hospital, Sarpsborg, Norway; Institute of Clinical Medicine, University of Oslo, Oslo, Norway
| | | | - Boris Delibasic
- Faculty of Organizational Sciences, University of Belgrade, Belgrade, Serbia
| | - Waleed Ghanima
- Department of Research, Østfold Hospital, Sarpsborg, Norway; Institute of Clinical Medicine, University of Oslo, Oslo, Norway; Department of Hematology, Oslo University Hospital, Oslo, Norway
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25
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Nishan A, M. Taslim Uddin Raju S, Hossain MI, Dipto SA, M. Tanvir Uddin S, Sijan A, Chowdhury MAS, Ahmad A, Mahamudul Hasan Khan M. A continuous cuffless blood pressure measurement from optimal PPG characteristic features using machine learning algorithms. Heliyon 2024; 10:e27779. [PMID: 38533045 PMCID: PMC10963242 DOI: 10.1016/j.heliyon.2024.e27779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Revised: 03/01/2024] [Accepted: 03/06/2024] [Indexed: 03/28/2024] Open
Abstract
Background and objective Hypertension is a potentially dangerous health condition that can be detected by measuring blood pressure (BP). Blood pressure monitoring and measurement are essential for preventing and treating cardiovascular diseases. Cuff-based devices, on the other hand, are uncomfortable and prevent continuous BP measurement. Methods In this study, a new non-invasive and cuff-less method for estimating Systolic Blood Pressure (SBP), Mean Arterial Pressure (MAP), and Diastolic Blood Pressure (DBP) has been proposed using characteristic features of photoplethysmogram (PPG) signals and nonlinear regression algorithms. PPG signals were collected from 219 participants, which were then subjected to preprocessing and feature extraction steps. Analyzing PPG and its derivative signals, a total of 46 time, frequency, and time-frequency domain features were extracted. In addition, the age and gender of each subject were also included as features. Further, correlation-based feature selection (CFS) and Relief F feature selection (ReliefF) techniques were used to select the relevant features and reduce the possibility of over-fitting the models. Finally, support vector regression (SVR), K-nearest neighbour regression (KNR), decision tree regression (DTR), and random forest regression (RFR) were established to develop the BP estimation model. Regression models were trained and evaluated on all features as well as selected features. The best regression models for SBP, MAP, and DBP estimations were selected separately. Results The SVR model, along with the ReliefF-based feature selection algorithm, outperforms other algorithms in estimating the SBP, MAP, and DBP with the mean absolute error of 2.49, 1.62 and 1.43 mmHg, respectively. The proposed method meets the Advancement of Medical Instrumentation standard for BP estimations. Based on the British Hypertension Society standard, the results also fall within Grade A for SBP, MAP, and DBP. Conclusion The findings show that the method can be used to estimate blood pressure non-invasively, without using a cuff or calibration, and only by utilizing the PPG signal characteristic features.
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Affiliation(s)
- Araf Nishan
- Department of Computer Science and Engineering, Khulna University of Engineering & Technology, Khulna - 9203, Bangladesh
| | - S. M. Taslim Uddin Raju
- Department of Computer Science and Engineering, Khulna University of Engineering & Technology, Khulna - 9203, Bangladesh
| | - Md Imran Hossain
- Department of Computer Science and Engineering, Khulna University of Engineering & Technology, Khulna - 9203, Bangladesh
| | - Safin Ahmed Dipto
- Department of Computer Science and Engineering, Khulna University of Engineering & Technology, Khulna - 9203, Bangladesh
| | - S. M. Tanvir Uddin
- Department of Electrical and Electronic Engineering, Dhaka University of Engineering & Technology, Gazipur, Bangladesh
| | - Asif Sijan
- Department of Software Engineering, American International University, Dhaka, Bangladesh
| | - Md Abu Shahid Chowdhury
- Department of Biomedical Engineering, Khulna University of Engineering & Technology, Khulna - 9203, Bangladesh
| | - Ashfaq Ahmad
- Department of Computer Science and Engineering, Khulna University of Engineering & Technology, Khulna - 9203, Bangladesh
| | - Md Mahamudul Hasan Khan
- Department of Computer Science and Engineering, Khulna University of Engineering & Technology, Khulna - 9203, Bangladesh
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Liu L, Jiang J, Wu L, Zeng DM, Yan C, Liang L, Shi J, Xie Q. Assessing the risk of concurrent mycoplasma pneumoniae pneumonia in children with tracheobronchial tuberculosis: retrospective study. PeerJ 2024; 12:e17164. [PMID: 38560467 PMCID: PMC10979740 DOI: 10.7717/peerj.17164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Accepted: 03/06/2024] [Indexed: 04/04/2024] Open
Abstract
Objective This study aimed to create a predictive model based on machine learning to identify the risk for tracheobronchial tuberculosis (TBTB) occurring alongside Mycoplasma pneumoniae pneumonia in pediatric patients. Methods Clinical data from 212 pediatric patients were examined in this retrospective analysis. This cohort included 42 individuals diagnosed with TBTB and Mycoplasma pneumoniae pneumonia (combined group) and 170 patients diagnosed with lobar pneumonia alone (pneumonia group). Three predictive models, namely XGBoost, decision tree, and logistic regression, were constructed, and their performances were assessed using the receiver's operating characteristic (ROC) curve, precision-recall curve (PR), and decision curve analysis (DCA). The dataset was divided into a 7:3 ratio to test the first and second groups, utilizing them to validate the XGBoost model and to construct the nomogram model. Results The XGBoost highlighted eight significant signatures, while the decision tree and logistic regression models identified six and five signatures, respectively. The ROC analysis revealed an area under the curve (AUC) of 0.996 for XGBoost, significantly outperforming the other models (p < 0.05). Similarly, the PR curve demonstrated the superior predictive capability of XGBoost. DCA further confirmed that XGBoost offered the highest AIC (43.226), the highest average net benefit (0.764), and the best model fit. Validation efforts confirmed the robustness of the findings, with the validation groups 1 and 2 showing ROC and PR curves with AUC of 0.997, indicating a high net benefit. The nomogram model was shown to possess significant clinical value. Conclusion Compared to machine learning approaches, the XGBoost model demonstrated superior predictive efficacy in identifying pediatric patients at risk of concurrent TBTB and Mycoplasma pneumoniae pneumonia. The model's identification of critical signatures provides valuable insights into the pathogenesis of these conditions.
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Affiliation(s)
- Lin Liu
- Department of Pediatrics, the Affiliated Changsha Central Hospital, Hengyang Medical School, University of South China, Changsha, Hunan, China
| | - Jie Jiang
- Department of Pediatrics, the Affiliated Changsha Central Hospital, Hengyang Medical School, University of South China, Changsha, Hunan, China
| | - Lei Wu
- Department of Pediatrics, the Affiliated Changsha Central Hospital, Hengyang Medical School, University of South China, Changsha, Hunan, China
| | - De miao Zeng
- Department of Joint Surgery, he Hong-he Affiliated Hospital of Kunming Medical University/The Southern Central Hospital of Yun-nan Province (The First People’s Hospital of Honghe State), Changsha, Hunan, China
| | - Can Yan
- Department of Pediatrics, the Affiliated Changsha Central Hospital, Hengyang Medical School, University of South China, Changsha, Hunan, China
| | - Linlong Liang
- Department of Pediatrics, the Affiliated Changsha Central Hospital, Hengyang Medical School, University of South China, Changsha, Hunan, China
| | - Jiayun Shi
- Department of Pediatrics, the Affiliated Changsha Central Hospital, Hengyang Medical School, University of South China, Changsha, Hunan, China
| | - Qifang Xie
- Department of Pediatrics, the Affiliated Changsha Central Hospital, Hengyang Medical School, University of South China, Changsha, Hunan, China
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Acharya N, Kar P, Ally M, Soar J. Predicting Co-Occurring Mental Health and Substance Use Disorders in Women: An Automated Machine Learning Approach. APPLIED SCIENCES 2024; 14:1630. [DOI: 10.3390/app14041630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2025]
Abstract
Significant clinical overlap exists between mental health and substance use disorders, especially among women. The purpose of this research is to leverage an AutoML (Automated Machine Learning) interface to predict and distinguish co-occurring mental health (MH) and substance use disorders (SUD) among women. By employing various modeling algorithms for binary classification, including Random Forest, Gradient Boosted Trees, XGBoost, Extra Trees, SGD, Deep Neural Network, Single-Layer Perceptron, K Nearest Neighbors (grid), and a super learning model (constructed by combining the predictions of a Random Forest model and an XGBoost model), the research aims to provide healthcare practitioners with a powerful tool for earlier identification, intervention, and personalised support for women at risk. The present research presents a machine learning (ML) methodology for more accurately predicting the co-occurrence of mental health (MH) and substance use disorders (SUD) in women, utilising the Treatment Episode Data Set Admissions (TEDS-A) from the year 2020 (n = 497,175). A super learning model was constructed by combining the predictions of a Random Forest model and an XGBoost model. The model demonstrated promising predictive performance in predicting co-occurring MH and SUD in women with an AUC = 0.817, Accuracy = 0.751, Precision = 0.743, Recall = 0.926 and F1 Score = 0.825. The use of accurate prediction models can substantially facilitate the prompt identification and implementation of intervention strategies.
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Affiliation(s)
- Nirmal Acharya
- Australian International Institute of Higher Education, Brisbane, QLD 4000, Australia
| | - Padmaja Kar
- St Vincent’s Care Services, Mitchelton, QLD 4053, Australia
| | - Mustafa Ally
- School of Business, University of Southern Queensland, Toowoomba, QLD 4350, Australia
| | - Jeffrey Soar
- School of Business, University of Southern Queensland, Toowoomba, QLD 4350, Australia
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Wang C, Wang L, Yu H, Seo A, Wang Z, Rajabzadeh S, Ni BJ, Shon HK. Machine learning for layer-by-layer nanofiltration membrane performance prediction and polymer candidate exploration. CHEMOSPHERE 2024; 350:140999. [PMID: 38151066 DOI: 10.1016/j.chemosphere.2023.140999] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Revised: 12/18/2023] [Accepted: 12/19/2023] [Indexed: 12/29/2023]
Abstract
In this study, machine learning-based models were established for layer-by-layer (LBL) nanofiltration (NF) membrane performance prediction and polymer candidate exploration. Four different models, i.e., linear, random forest (RF), boosted tree (BT), and eXtreme Gradient Boosting (XGBoost), were formed, and membrane performance prediction was determined in terms of membrane permeability and selectivity. The XGBoost exhibited optimal prediction accuracy for membrane permeability (coefficient of determination (R2): 0.99) and membrane selectivity (R2: 0.80). The Shapley Additive exPlanation (SHAP) method was utilized to evaluate the effects of different LBL NF membrane fabrication conditions on membrane performances. The SHAP method was also used to identify the relationships between polymer structure and membrane performance. Polymers were represented by Morgan fingerprint, which is an effective description approach for developing modeling. Based on the SHAP value results, two reference Morgan fingerprints were constructed containing atomic groups with positive contributions to membrane permeability and selectivity. According to the reference Morgan fingerprint, 204 potential polymers were explored from the largest polymer database (PoLyInfo). By calculating the similarities between each potential polymer and both reference Morgan fingerprints, 23 polymer candidates were selected and could be further used for LBL NF membrane fabrication with the potential for providing good membrane performance. Overall, this work provided new ways both for LBL NF membrane performance prediction and high-performance polymer candidate exploration. The source code for the models and algorithms used in this study is publicly available to facilitate replication and further research. https://github.com/wangliwfsd/LLNMPP/.
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Affiliation(s)
- Chen Wang
- School of Civil and Environmental Engineering, University of Technology Sydney, Sydney, New South Wales, 2007, Australia
| | - Li Wang
- CSIRO Space and Astronomy, PO Box 1130, Bentley, WA, 6102, Australia
| | - Hanwei Yu
- School of Civil and Environmental Engineering, University of Technology Sydney, Sydney, New South Wales, 2007, Australia
| | - Allan Seo
- School of Civil and Environmental Engineering, University of Technology Sydney, Sydney, New South Wales, 2007, Australia
| | - Zhining Wang
- Shandong Provincial Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao, 266237, China
| | - Saeid Rajabzadeh
- School of Civil and Environmental Engineering, University of Technology Sydney, Sydney, New South Wales, 2007, Australia
| | - Bing-Jie Ni
- School of Civil and Environmental Engineering, University of New South Wales, Sydney, New South Wales, 2052, Australia
| | - Ho Kyong Shon
- School of Civil and Environmental Engineering, University of Technology Sydney, Sydney, New South Wales, 2007, Australia.
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Ito H, Sakamaki K, Young GJ, Blair PS, Hashim H, Lane JA, Kobayashi K, Clout M, Abrams P, Chapple C, Malde S, Drake MJ. Predicting Prostate Surgery Outcomes from Standard Clinical Assessments of Lower Urinary Tract Symptoms To Derive Prognostic Symptom and Flowmetry Criteria. Eur Urol Focus 2024; 10:197-204. [PMID: 37455216 DOI: 10.1016/j.euf.2023.06.013] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Revised: 06/01/2023] [Accepted: 06/22/2023] [Indexed: 07/18/2023]
Abstract
BACKGROUND Assessment of male lower urinary tract symptoms (LUTS) needs to identify predictors of symptom outcomes when interventional treatment is planned. OBJECTIVE To develop a novel prediction model for prostate surgery outcomes and validate it using a separate patient cohort and derive thresholds for key clinical parameters. DESIGN, SETTING, AND PARTICIPANTS From the UPSTREAM trial of 820 men seeking treatment for LUTS, analysis of bladder diary (BD), International Prostate Symptom Score (IPSS), IPSS-quality of life, and uroflowmetry data was performed for 176 participants who underwent prostate surgery and provided complete data. For external validation, data from a retrospective database of surgery outcomes in a Japanese urology department (n = 227) were used. OUTCOME MEASUREMENTS AND STATISTICAL ANALYSIS Symptom improvement was defined as a reduction in total IPSS of ≥3 points. Multiple logistic regression, classification tree analysis, and random forest models were generated, including versions with and without BD data. RESULTS AND LIMITATIONS Multiple logistic regression without BD data identified age (p = 0.029), total IPSS (p = 0.0016), and maximum flow rate (Qmax; p = 0.066) as predictors of outcomes, with area under the receiver operating characteristic curve (AUC) of 77.1%. Classification tree analysis without BD data gave thresholds of IPSS <16 and Qmax ≥13 ml/s (AUC 75.0%). The random forest model, which included all clinical parameters except BD data, had an AUC of 94.7%. Internal validation using the bootstrap method showed reasonable AUCs (69.6-85.8%). Analyses using BD data marginally improved the model fits. External validation gave comparable AUCs for logistic regression, classification tree analysis, and random forest models (all without BD; 70.9%, 67.3%, and 68.5%, respectively). Limitations include the significant number of men with incomplete baseline data and limited assessments in the external validation cohort. CONCLUSIONS Outcomes of prostate surgery can be predicted preoperatively using age, total IPSS, and uroflowmetry data, with prognostic thresholds of 16 for IPSS and 13 ml/s for Qmax. PATIENT SUMMARY This study identified key preoperative factors that can predict outcomes of prostate surgery for bothersome urinary symptoms, including which patients are at risk of a poor outcome.
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Affiliation(s)
- Hiroki Ito
- Bristol Urological Institute, North Bristol NHS Trust, Southmead Hospital, Bristol, UK; Department of Urology, Yokohama City University, Yokohama, Japan
| | - Kentaro Sakamaki
- Center for Data Science, Yokohama City University, Yokohama, Japan
| | - Grace J Young
- Population Health Sciences, Bristol Medical School, University of Bristol, Bristol, UK; Bristol Trials Centre, Bristol Medical School, University of Bristol, Bristol, UK
| | - Peter S Blair
- Population Health Sciences, Bristol Medical School, University of Bristol, Bristol, UK; Bristol Trials Centre, Bristol Medical School, University of Bristol, Bristol, UK
| | - Hashim Hashim
- Bristol Urological Institute, North Bristol NHS Trust, Southmead Hospital, Bristol, UK
| | - J Athene Lane
- Population Health Sciences, Bristol Medical School, University of Bristol, Bristol, UK; Bristol Trials Centre, Bristol Medical School, University of Bristol, Bristol, UK
| | - Kazuki Kobayashi
- Department of Urology, Yokosuka Kyosai Hospital, Yokosuka, Japan
| | - Madeleine Clout
- Population Health Sciences, Bristol Medical School, University of Bristol, Bristol, UK; Bristol Trials Centre, Bristol Medical School, University of Bristol, Bristol, UK
| | - Paul Abrams
- Bristol Urological Institute, North Bristol NHS Trust, Southmead Hospital, Bristol, UK
| | - Christopher Chapple
- Sheffield Teaching Hospitals NHS Trust, Royal Hallamshire Hospital, Sheffield, UK
| | - Sachin Malde
- Urology Centre, Guy's and St. Thomas' NHS Foundation Trust, London, UK
| | - Marcus J Drake
- Bristol Urological Institute, North Bristol NHS Trust, Southmead Hospital, Bristol, UK; Department of Surgery and Cancer, Imperial College, London, UK.
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Jin Z, Ma F, Chen H, Guo S. Leveraging machine learning to distinguish between bacterial and viral induced pharyngitis using hematological markers: a retrospective cohort study. Sci Rep 2023; 13:22899. [PMID: 38129529 PMCID: PMC10739959 DOI: 10.1038/s41598-023-49925-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Accepted: 12/13/2023] [Indexed: 12/23/2023] Open
Abstract
Accurate differentiation between bacterial and viral-induced pharyngitis is recognized as essential for personalized treatment and judicious antibiotic use. From a cohort of 693 patients with pharyngitis, data from 197 individuals clearly diagnosed with bacterial or viral infections were meticulously analyzed in this study. By integrating detailed hematological insights with several machine learning algorithms, including Random Forest, Neural Networks, Decision Trees, Support Vector Machine, Naive Bayes, and Lasso Regression, for potential biomarkers were identified, with an emphasis being placed on the diagnostic significance of the Monocyte-to-Lymphocyte Ratio. Distinct inflammatory signatures associated with bacterial infections were spotlighted in this study. An innovation introduced in this research was the adaptation of the high-accuracy Lasso Regression model for the TI-84 calculator, with an AUC (95% CI) of 0.94 (0.925-0.955) being achieved. Using this adaptation, pivotal laboratory parameters can be input on-the-spot and infection probabilities can be computed subsequently. This methodology embodies an improvement in diagnostics, facilitating more effective distinction between bacterial and viral infections while fostering judicious antibiotic use.
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Affiliation(s)
- Zhe Jin
- School of Medical Technology, Hebei Medical University, Shijiazhuang, 050017, People's Republic of China
| | - Fengmei Ma
- Department of Otorhinolaryngology, Hebei Provincial Hospital of Traditional Chinese Medicine, Shijiazhuang, 050011, People's Republic of China
| | - Haoyang Chen
- Medicine-Education Coordination and Medical Education Research Center, Hebei Medical University, Shijiazhuang, 050017, People's Republic of China
| | - Shufan Guo
- Department of Otorhinolaryngology, Hebei Provincial Hospital of Traditional Chinese Medicine, Shijiazhuang, 050011, People's Republic of China.
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Ito H, Sakamaki K, Fukuda T, Yamamichi F, Watanabe T, Tabei T, Inoue T, Matsuzaki J, Kobayashi K. Models to predict the surgical outcome of mini-ECIRS (endoscopic combined intrarenal surgery) for renal and/or ureteral stones. Sci Rep 2023; 13:22848. [PMID: 38129560 PMCID: PMC10739798 DOI: 10.1038/s41598-023-50022-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Accepted: 12/14/2023] [Indexed: 12/23/2023] Open
Abstract
To establish a safer and more efficient treatment strategy with mini-endoscopic combined intrarenal surgery (ECIRS), the present study aimed to develop models to predict the outcomes of mini-ECIRS in patients with renal and/or ureteral stones. We retrospectively analysed consecutive patients with renal and/or ureteral stones who underwent mini-ECIRS at three Japanese tertiary institutions. Final treatment outcome was evaluated by CT imaging at 1 month postoperatively and stone free (SF) was defined as completely no residual stone or residual stone fragments ≤ 2 mm. Three prognostic models (multiple logistic regression, classification tree analysis, and machine learning-based random forest) were developed to predict surgical outcomes using preoperative clinical factors. Clinical data from 1432 ECIRS were pooled from a database registered at three institutions, and 996 single sessions of mini-ECIRS were analysed in this study. The overall SF rate was 62.3%. The multiple logistic regression model consisted of stone burden (P < 0.001), number of involved calyces (P < 0.001), nephrostomy prior to mini-ECIRS (P = 0.091), and ECOG-PS (P = 0.110), wherein the area under the curve (AUC) was 70.7%. The classification tree analysis consisted of the number of involved calyces with an AUC of 61.7%. The random forest model showed that the top predictive variable was the number of calyces involved, with an AUC of 91.9%. Internal validation revealed that the AUCs for the multiple logistic regression model, classification tree analysis and random forest models were 70.4, 69.6 and 85.9%, respectively. The number of involved calyces, and a smaller stone burden implied a SF outcome. The machine learning-based model showed remarkably high accuracy and may be a promising tool for physicians and patients to obtain proper consent, avoid inefficient surgery, and decide preoperatively on the most efficient treatment strategies, including staged mini-ECIRS.
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Affiliation(s)
- Hiroki Ito
- Department of Urology, Yokosuka Kyosai Hospital, Yokosuka, Japan.
- Department of Urology, Yokohama City University Graduate School of Medicine, Yokohama, Japan.
| | - Kentaro Sakamaki
- Faculty of Health Data Science, Juntendo University, Tokyo, Japan
| | - Tetsuo Fukuda
- Department of Urology, Ohguchi East General Hospital, Yokohama, Japan
| | | | | | - Tadashi Tabei
- Department of Urology, Yokosuka Kyosai Hospital, Yokosuka, Japan
| | - Takaaki Inoue
- Department of Urology, Hara Genitourinary Hospital, Kobe, Japan
| | - Junichi Matsuzaki
- Department of Urology, Ohguchi East General Hospital, Yokohama, Japan
| | - Kazuki Kobayashi
- Department of Urology, Yokosuka Kyosai Hospital, Yokosuka, Japan
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Wang Y, Wei B, Zhao T, Shen H, Liu X, Wang J, Wang Q, Shen R, Feng D. Machine learning-based prediction models for parathyroid carcinoma using pre-surgery cognitive function and clinical features. Sci Rep 2023; 13:19007. [PMID: 37923800 PMCID: PMC10624903 DOI: 10.1038/s41598-023-46294-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Accepted: 10/30/2023] [Indexed: 11/06/2023] Open
Abstract
Patients with parathyroid carcinoma (PC) are often diagnosed postoperatively, due to incomplete resection during the initial surgery, resulting in poor outcomes. The aim of our study was to investigate the pre-surgery indicators of PC and try to develop a predictive model for PC utilizing machine learning. Evaluation of pre-surgery neuropsychological function and confirmation of pathology were carried out in 133 patients with primary hyperparathyroidism in Beijing Chaoyang Hospital from December 2019 to January 2023. Patients were randomly divided into a training cohort (n = 93) and a validating cohort (n = 40). Analysis of the clinical dataset, two machine learning including the extreme gradient boosting (XGBoost) and the least absolute shrinkage and selection operator (LASSO) regression were utilized to develop the prediction model for PC. Logistic regression analysis was also conducted for comparison. Significant differences in elevated parathyroid hormone and decreased serum phosphorus in PC compared to (BP). The lower score of MMSE and MOCA was observed in PC and a cutoff of MMSE < 24 was the optimal threshold to stratify PC from BP (area under the curve AUC 0.699 vs 0.625). The predicted probability of PC by machine learning was similar to the observed probability in the test set, whereas the logistic model tended to overpredict the possibility of PC. The XGBoost model attained a higher AUC than the logistic algorithms and LASSO models. (0.835 vs 0.683 vs 0.607). Preoperative cognitive function may be a probable predictor for PC. The cognitive function-based prediction model based on the XGBoost algorithm outperformed LASSO and logistic regression, providing valuable preoperative assistance to surgeons in clinical decision-making for patients suspected PC.
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Affiliation(s)
- Yuting Wang
- Department of Thyroid and Neck Surgery, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Bojun Wei
- Department of Thyroid and Neck Surgery, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China.
| | - Teng Zhao
- Department of Thyroid and Neck Surgery, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Hong Shen
- Department of Thyroid and Neck Surgery, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Xing Liu
- Department of Thyroid and Neck Surgery, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Jiacheng Wang
- Department of Thyroid and Neck Surgery, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Qian Wang
- Department of Thyroid and Neck Surgery, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Rongfang Shen
- Department of Thyroid and Neck Surgery, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Dalin Feng
- Department of Thyroid and Neck Surgery, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
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Li Q, Yang H, Hao N, Du M, Zhao Y, Li Y, Li X. Biodegradability analysis of Dioxins through in silico methods: Model construction and mechanism analysis. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 345:118898. [PMID: 37657295 DOI: 10.1016/j.jenvman.2023.118898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2023] [Revised: 08/18/2023] [Accepted: 08/27/2023] [Indexed: 09/03/2023]
Abstract
The biodegradation treatment of dioxins has long been of interest due to its good ecological and economic effects. In this study, the biodegradability of polychlorinated dibenzo-p-dioxins (PCDDs) were investigated by constructing machine learning and multiple linear regression models. The maximum chlorine atomic charge (qHirshfeldCl+), which characterizes the biodegradation ability of PCDDs, was used as the response value. The random forest model was used to rank the importance on the 1471 descriptors of PCDDs, and the BCUTp-1 h, QXZ, JGI4, ATSC8c, VE3_Dt, topoShape, and maxwHBa were screened as the important descriptors by Pearson's correlation coefficient method. A quantitative structure-activity relationship (QSAR) model was constructed to predict the biodegradability of PCDDs. In addition, the extreme gradient boosting (XGBoost) and random forest model were also constructed and proved the good predictability of QSAR model. The biodegradability of polychlorinated dibenzofurans (PCDFs) can also be predicted by the constructed three models from a certain level after adjusting some model parameters, which further proved the versatility of the models. Besides, the sensitivity analysis of the QSAR model and a 3D-QSAR model was developed to investigate the biodegradability mechanisms of PCDDs. Results showed that the descriptors BCUTp-1 h, JGI4, and maxwHBa were the key descriptors in the biodegradability effect by the sensitivity analysis of the QSAR model. Coupled with the results of PCDDs biodegradability 3D-QSAR model, BCUTp-1 h, JGI4, and maxwHBa were confirmed as the main descriptors that affect the biodegradability of dioxins. This study provides a novel theoretical perspective for the research of the biodegradation of both PCDDs and PCDFs dioxins.
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Affiliation(s)
- Qing Li
- College of Environmental Science and Engineering, North China Electric Power University, Beijing, 102206, China.
| | - Hao Yang
- College of Environmental Science and Engineering, North China Electric Power University, Beijing, 102206, China.
| | - Ning Hao
- College of New Energy and Environment, Jilin University, Changchun, 130012, China.
| | - Meijn Du
- College of Environmental Science and Engineering, North China Electric Power University, Beijing, 102206, China.
| | - Yuanyuan Zhao
- College of Environmental Science and Engineering, North China Electric Power University, Beijing, 102206, China.
| | - Yu Li
- College of Environmental Science and Engineering, North China Electric Power University, Beijing, 102206, China.
| | - Xixi Li
- Center for Environmental Health Risk Assessment and Research, Chinese Research Academy of Environmental Sciences, Beijing, 100012, China; Northern Region Persistent Organic Pollution Control (NRPOP) Laboratory, Faculty of Engineering and Applied Science, Memorial University, St. John's, NL A1B 3X5, Canada.
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Hong D, Chang H, He X, Zhan Y, Tong R, Wu X, Li G. Construction of an Early Alert System for Intradialytic Hypotension before Initiating Hemodialysis Based on Machine Learning. KIDNEY DISEASES (BASEL, SWITZERLAND) 2023; 9:433-442. [PMID: 37901708 PMCID: PMC10601920 DOI: 10.1159/000531619] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Accepted: 06/05/2023] [Indexed: 10/31/2023]
Abstract
Introduction Intradialytic hypotension (IDH) is prevalent and associated with high hospitalization and mortality rates. The purpose of this study was to explore the risk factors for IDH and use artificial intelligence to establish an early alert system before hemodialysis sessions to identify patients at high risk of IDH. Materials and Methods We obtained data on 314,534 hemodialysis sessions conducted at Sichuan Provincial People's Hospital from the renal disease treatment information system. IDH was defined as a systolic blood pressure drop ≥20 mm Hg, a mean arterial pressure drop ≥10 mm Hg during dialysis, or the occurrence of clinical hypotensive events requiring nursing intervention. After pre-processing, the data were randomly divided into training (80%) and testing (20%) sets. Four interpolation methods, three feature selection methods, and 18 machine learning algorithms were used to construct predictive models. The area under the receiver operating characteristic curve (AUC) was the main indicator for evaluating the performance of the models, while Shapley Additive ExPlanation was used to explain the contribution of each variable to the best predictive model. Results A total of 3,906 patients and 314,534 dialysis sessions were included, of which 142,237 cases showed IDH (incidence rate, 45.2%). Nineteen parameters were identified through artificial intelligence feature screening. They included age, pre-dialysis weight, dry weight, pre-dialysis blood pressure, heart rate, prescribed ultrafiltration, blood cell counts (neutrophil, lymphocyte, monocyte, eosinophil, lymphocyte, and platelet counts), hematocrit, serum calcium, creatinine, urea, glucose, and uric acid. Random forest, gradient boosting, and logistic regression were the three best models, and the AUCs were 0.812 (95% confidence interval [CI], 0.811-0.813), 0.748 (95% CI, 0.747-0.749), and 0.743 (95% CI, 0.742-0.744), respectively. Conclusion Our dialysis software-based artificial intelligence alert system can be used to predict IDH occurrence, enabling the initiation of relevant interventions.
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Affiliation(s)
- Daqing Hong
- Department of Nephrology, Sichuan Provincial People’s Hospital, University of Electronic Science and Technology of China, Chengdu, China
| | - Huan Chang
- Department of Pharmacy, Sichuan Provincial People’s Hospital, University of Electronic Science and Technology of China, Chengdu, China
| | - Xin He
- Department of Nephrology, Sichuan Provincial People’s Hospital, University of Electronic Science and Technology of China, Chengdu, China
- Department of Nephrology, Affiliated Hospital of Southwest Medical University, Luzhou, China
| | - Ya Zhan
- Department of Nephrology, Sichuan Provincial People’s Hospital, University of Electronic Science and Technology of China, Chengdu, China
- Department of Nephrology, Affiliated Hospital of Southwest Medical University, Luzhou, China
| | - Rongsheng Tong
- Department of Pharmacy, Sichuan Provincial People’s Hospital, University of Electronic Science and Technology of China, Chengdu, China
| | - Xingwei Wu
- Department of Pharmacy, Sichuan Provincial People’s Hospital, University of Electronic Science and Technology of China, Chengdu, China
| | - Guisen Li
- Department of Nephrology, Sichuan Provincial People’s Hospital, University of Electronic Science and Technology of China, Chengdu, China
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Dong J, Wang K, He J, Guo Q, Min H, Tang D, Zhang Z, Zhang C, Zheng F, Li Y, Xu H, Wang G, Luan S, Yin L, Zhang X, Dai Y. Machine learning-based intradialytic hypotension prediction of patients undergoing hemodialysis: A multicenter retrospective study. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 240:107698. [PMID: 37429246 DOI: 10.1016/j.cmpb.2023.107698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Revised: 05/22/2023] [Accepted: 06/24/2023] [Indexed: 07/12/2023]
Abstract
BACKGROUND AND OBJECTIVE Intradialytic hypotension (IDH) is closely associated with adverse clinical outcomes in HD-patients. An IDH predictor model is important for IDH risk screening and clinical decision-making. In this study, we used Machine learning (ML) to develop IDH model for risk prediction in HD patients. METHODS 62,227 dialysis sessions were randomly partitioned into training data (70%), test data (20%), and validation data (10%). IDH-A model based on twenty-seven variables was constructed for risk prediction for the next HD treatment. IDH-B model based on ten variables from 64,870 dialysis sessions was developed for risk assessment before each HD treatment. Light Gradient Boosting Machine (LightGBM), Linear Discriminant Analysis, support vector machines, XGBoost, TabNet, and multilayer perceptron were used to develop the predictor model. RESULTS In IDH-A model, we identified the LightGBM method as the best-performing and interpretable model with C- statistics of 0.82 in Fall30Nadir90 definitions, which was higher than those obtained using the other models (P<0.01). In other IDH standards of Nadir90, Nadir100, Fall20, Fall30, and Fall20Nadir90, the LightGBM method had a performance with C- statistics ranged 0.77 to 0.89. As a complementary application, the LightGBM model in IDH-B model achieved C- statistics of 0.68 in Fall30Nadir90 definitions and 0.69 to 0.78 in the other five IDH standards, which were also higher than the other methods, respectively. CONCLUSION Use ML, we identified the LightGBM method as the good-performing and interpretable model. We identified the top variables as the high-risk factors for IDH incident in HD-patient. IDH-A and IDH-B model can usefully complement each other for risk prediction and further facilitate timely intervention through applied into different clinical setting.
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Affiliation(s)
- Jingjing Dong
- Clinical Medical Research Center, the Second Clinical Medical College of Jinan University, Shenzhen People's Hospital, Jinan University, Shenzhen 518020, China; Institute of Nephrology and Blood Purification, the First Affiliated Hospital of Jinan University, Jinan University, Guangzhou 510630, China
| | - Kang Wang
- Department of Nephrology, the Second Affiliated Hospital of Jinan University, Shenzhen People's Hospital, Jinan University, Shenzhen 518020, China
| | - Jingquan He
- Clinical Medical Research Center, the Second Clinical Medical College of Jinan University, Shenzhen People's Hospital, Jinan University, Shenzhen 518020, China
| | - Qi Guo
- Shenzhen Yuchen Medical Technology Co., Ltd. Co., Ltd, Shenzhen 518020, China
| | - Haodi Min
- Shenzhen Yuchen Medical Technology Co., Ltd. Co., Ltd, Shenzhen 518020, China
| | - Donge Tang
- Clinical Medical Research Center, the Second Clinical Medical College of Jinan University, Shenzhen People's Hospital, Jinan University, Shenzhen 518020, China
| | - Zeyu Zhang
- Clinical Medical Research Center, the Second Clinical Medical College of Jinan University, Shenzhen People's Hospital, Jinan University, Shenzhen 518020, China; Institute of Nephrology and Blood Purification, the First Affiliated Hospital of Jinan University, Jinan University, Guangzhou 510630, China
| | - Cantong Zhang
- Clinical Medical Research Center, the Second Clinical Medical College of Jinan University, Shenzhen People's Hospital, Jinan University, Shenzhen 518020, China
| | - Fengping Zheng
- Clinical Medical Research Center, the Second Clinical Medical College of Jinan University, Shenzhen People's Hospital, Jinan University, Shenzhen 518020, China
| | - Yixi Li
- Clinical Medical Research Center, the Second Clinical Medical College of Jinan University, Shenzhen People's Hospital, Jinan University, Shenzhen 518020, China; Institute of Nephrology and Blood Purification, the First Affiliated Hospital of Jinan University, Jinan University, Guangzhou 510630, China
| | - Huixuan Xu
- Clinical Medical Research Center, the Second Clinical Medical College of Jinan University, Shenzhen People's Hospital, Jinan University, Shenzhen 518020, China
| | - Gang Wang
- Department of Nephrology, University of Chinese Academy of Sciences Shenzhen Hospital (Guangming), Shenzhen 518020, China
| | - Shaodong Luan
- Departments of Nephrology, Shenzhen Longhua District Central Hospital, Shenzhen 518020, China
| | - Lianghong Yin
- Institute of Nephrology and Blood Purification, the First Affiliated Hospital of Jinan University, Jinan University, Guangzhou 510630, China.
| | - Xinzhou Zhang
- Department of Nephrology, the Second Affiliated Hospital of Jinan University, Shenzhen People's Hospital, Jinan University, Shenzhen 518020, China.
| | - Yong Dai
- Clinical Medical Research Center, the Second Clinical Medical College of Jinan University, Shenzhen People's Hospital, Jinan University, Shenzhen 518020, China.
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Lee H, Moon SJ, Kim SW, Min JW, Park HS, Yoon HE, Kim YS, Kim HW, Yang CW, Chung S, Koh ES, Chung BH. Prediction of intradialytic hypotension using pre-dialysis features-a deep learning-based artificial intelligence model. Nephrol Dial Transplant 2023; 38:2310-2320. [PMID: 37019834 DOI: 10.1093/ndt/gfad064] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Indexed: 04/07/2023] Open
Abstract
BACKGROUND Intradialytic hypotension (IDH) is a serious complication of hemodialysis (HD) that is associated with increased risks of cardiovascular morbidity and mortality. However, its accurate prediction remains a clinical challenge. The aim of this study was to develop a deep learning-based artificial intelligence (AI) model to predict IDH using pre-dialysis features. METHODS Data from 2007 patients with 943 220 HD sessions at seven university hospitals were used. The performance of the deep learning model was compared with three machine learning models (logistic regression, random forest and XGBoost). RESULTS IDH occurred in 5.39% of all studied HD sessions. A lower pre-dialysis blood pressure (BP), and a higher ultrafiltration (UF) target rate and interdialytic weight gain in IDH sessions compared with non-IDH sessions, and the occurrence of IDH in previous sessions was more frequent among IDH sessions compared with non-IDH sessions. Matthews correlation coefficient and macro-averaged F1 score were used to evaluate both positive and negative prediction performances. Both values were similar in logistic regression, random forest, XGBoost and deep learning models, developed with data from a single session. When combining data from the previous three sessions, the prediction performance of the deep learning model improved and became superior to that of other models. The common top-ranked features for IDH prediction were mean systolic BP (SBP) during the previous session, UF target rate, pre-dialysis SBP, and IDH experience during the previous session. CONCLUSIONS Our AI model predicts IDH accurately, suggesting it as a reliable tool for HD treatment.
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Affiliation(s)
- Hanbi Lee
- Transplantation Research Center, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
- Division of Nephrology, Department of Internal Medicine, Seoul St Mary's Hospital, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
| | | | | | - Ji Won Min
- Department of Internal Medicine, Bucheon St Mary's Hospital, College of Medicine, The Catholic University of Korea, Bucheon, Republic of Korea
| | - Hoon Suk Park
- Department of Internal Medicine, Eunpyeong St Mary's Hospital, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
| | - Hye Eun Yoon
- Department of Internal Medicine, Incheon St Mary's Hospital, College of Medicine, The Catholic University of Korea, Incheon, Republic of Korea
| | - Young Soo Kim
- Department of Internal Medicine, Uijeongbu St Mary's Hospital, College of Medicine, The Catholic University of Korea, Uijeongbu, Republic of Korea
| | - Hyung Wook Kim
- Department of Internal Medicine, St Vincent's Hospital, College of Medicine, The Catholic University of Korea, Suwon, Republic of Korea
| | - Chul Woo Yang
- Transplantation Research Center, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
- Division of Nephrology, Department of Internal Medicine, Seoul St Mary's Hospital, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
| | - Sungjin Chung
- Division of Nephrology, Department of Internal Medicine, Yeouido St Mary's Hospital, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
| | - Eun Sil Koh
- Division of Nephrology, Department of Internal Medicine, Yeouido St Mary's Hospital, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
| | - Byung Ha Chung
- Transplantation Research Center, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
- Division of Nephrology, Department of Internal Medicine, Seoul St Mary's Hospital, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
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Halvorson BD, Bao Y, Ward AD, Goldman D, Frisbee JC. Regulation of Skeletal Muscle Resistance Arteriolar Tone: Integration of Multiple Mechanisms. J Vasc Res 2023; 60:245-272. [PMID: 37769627 DOI: 10.1159/000533316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Accepted: 07/27/2023] [Indexed: 10/03/2023] Open
Abstract
INTRODUCTION Physiological system complexity represents an imposing challenge to gaining insight into how arteriolar behavior emerges. Further, mechanistic complexity in arteriolar tone regulation requires that a systematic determination of how these processes interact to alter vascular diameter be undertaken. METHODS The present study evaluated the reactivity of ex vivo proximal and in situ distal resistance arterioles in skeletal muscle with challenges across the full range of multiple physiologically relevant stimuli and determined the stability of responses over progressive alterations to each other parameter. The five parameters chosen for examination were (1) metabolism (adenosine concentration), (2) adrenergic activation (norepinephrine concentration), (3) myogenic activation (intravascular pressure), (4) oxygen (superfusate PO2), and (5) wall shear rate (altered intraluminal flow). Vasomotor tone of both arteriole groups following challenge with individual parameters was determined; subsequently, responses were determined following all two- and three-parameter combinations to gain deeper insight into how stimuli integrate to change arteriolar tone. A hierarchical ranking of stimulus significance for establishing arteriolar tone was performed using mathematical and statistical analyses in conjunction with machine learning methods. RESULTS Results were consistent across methods and indicated that metabolic and adrenergic influences were most robust and stable across all conditions. While the other parameters individually impact arteriolar tone, their impact can be readily overridden by the two dominant contributors. CONCLUSION These data suggest that mechanisms regulating arteriolar tone are strongly affected by acute changes to the local environment and that ongoing investigation into how microvessels integrate stimuli regulating tone will provide a more thorough understanding of arteriolar behavior emergence across physiological and pathological states.
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Affiliation(s)
- Brayden D Halvorson
- Department of Medical Biophysics, Schulich School of Medicine and Dentistry, London, Ontario, Canada
| | - Yuki Bao
- Department of Biomedical Engineering, University of Western Ontario, London, Ontario, Canada
| | - Aaron D Ward
- Department of Medical Biophysics, Schulich School of Medicine and Dentistry, London, Ontario, Canada
- Lawson Health Research Institute, London, Ontario, Canada
| | - Daniel Goldman
- Department of Medical Biophysics, Schulich School of Medicine and Dentistry, London, Ontario, Canada
- Department of Biomedical Engineering, University of Western Ontario, London, Ontario, Canada
| | - Jefferson C Frisbee
- Department of Medical Biophysics, Schulich School of Medicine and Dentistry, London, Ontario, Canada
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Li Y, Yang H, He W, Li Y. Human Endocrine-Disrupting Effects of Phthalate Esters through Adverse Outcome Pathways: A Comprehensive Mechanism Analysis. Int J Mol Sci 2023; 24:13548. [PMID: 37686353 PMCID: PMC10488033 DOI: 10.3390/ijms241713548] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 08/11/2023] [Accepted: 08/30/2023] [Indexed: 09/10/2023] Open
Abstract
Phthalate esters (PAEs) are widely exposed in the environment as plasticizers in plastics, and they have been found to cause significant environmental and health hazards, especially in terms of endocrine disruption in humans. In order to investigate the processes underlying the endocrine disruption effects of PAEs, three machine learning techniques were used in this study to build an adverse outcome pathway (AOP) for those effects on people. According to the results of the three machine learning techniques, the random forest and XGBoost models performed well in terms of prediction. Subsequently, sensitivity analysis was conducted to identify the initial events, key events, and key features influencing the endocrine disruption effects of PAEs on humans. Key features, such as Mol.Wt, Q+, QH+, ELUMO, minHCsats, MEDC-33, and EG, were found to be closely related to the molecular structure. Therefore, a 3D-QSAR model for PAEs was constructed, and, based on the three-dimensional potential energy surface information, it was discovered that the hydrophobic, steric, and electrostatic fields of PAEs significantly influence their endocrine disruption effects on humans. Lastly, an analysis of the contributions of amino acid residues and binding energy (BE) was performed, identifying and confirming that hydrogen bonding, hydrophobic interactions, and van der Waals forces are important factors affecting the AOP of PAEs' molecular endocrine disruption effects. This study defined and constructed a comprehensive AOP for the endocrine disruption effects of PAEs on humans and developed a method based on theoretical simulation to characterize the AOP, providing theoretical guidance for studying the mechanisms of toxicity caused by other pollutants.
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Affiliation(s)
| | | | | | - Yu Li
- College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, China; (Y.L.); (H.Y.); (W.H.)
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Cai P, Lin Q, Lv D, Zhang J, Wang Y, Wang X. Establishment of a scoring model for the differential diagnosis of white coat hypertension and sustained hypertension. Blood Press Monit 2023; 28:185-192. [PMID: 37115849 PMCID: PMC10309104 DOI: 10.1097/mbp.0000000000000646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2022] [Accepted: 03/19/2023] [Indexed: 04/29/2023]
Abstract
OBJECTIVES This study aimed to establish a scoring model for the differential diagnosis of white coat hypertension (WCH) and sustained hypertension (SHT). METHODS This study comprised 553 adults with elevated office blood pressure, normal renal function, and no antihypertensive medications. Through questionnaire investigation and biochemical detection, 17 parameters, such as gender and age, were acquired. WCH and SHT were distinguished by 24 h ambulatory blood pressure monitoring. The participants were randomly divided into a training set (445 cases) and a validation set (108 cases). The above parameters were screened using least absolute shrinkage and selection operator regression and univariate logistic regression analysis in the training set. Afterward, a scoring model was constructed through multivariate logistic regression analysis. RESULTS Finally, six parameters were selected, including isolated systolic hypertension, office systolic blood pressure, office diastolic blood pressure, triglyceride, serum creatinine, and cardiovascular and cerebrovascular diseases. Multivariate logistic regression was used to establish a scoring model. The R2 and area under the ROC curve (AUC) of the scoring model in the training set were 0.163 and 0.705, respectively. In the validation set, the R2 of the scoring model was 0.206, and AUC was 0.718. The calibration test results revealed that the scoring model had good stability in both the training and validation sets (mean square error = 0.001, mean absolute error = 0.014; mean square error = 0.001, mean absolute error = 0.025). CONCLUSION A stable scoring model for distinguishing WCH was established, which can assist clinicians in identifying WCH at the first diagnosis.
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Affiliation(s)
- Peng Cai
- Department of Cardiology, Institute of Field Surgery, Daping Hospital, Army Medical University, Chongqing
- Department of Intensive Care Medicine, PLA 80th Group Army Hospital, Weifang
| | - Qingshu Lin
- Department of Intensive Care Medicine, PLA 80th Group Army Hospital, Weifang
| | - Dan Lv
- Department of Intensive Care Medicine, PLA 80th Group Army Hospital, Weifang
| | - Jing Zhang
- Department of Intensive Care Medicine, PLA 80th Group Army Hospital, Weifang
| | - Yan Wang
- Department of Pharmacy, Key Laboratory of Basic Pharmacology of Ministry of Education Joint International Research Laboratory of Ministry Education, Zunyi Medical University, Zunyi
| | - Xukai Wang
- Department of Cardiology, Institute of Field Surgery, Daping Hospital, Army Medical University, Chongqing
- Department of Cardiology, Chongqing Hygeia Hospital, Chongqing, China
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Inoue H, Oya M, Aizawa M, Wagatsuma K, Kamimae M, Kashiwagi Y, Ishii M, Wakabayashi H, Fujii T, Suzuki S, Hattori N, Tatsumoto N, Kawakami E, Asanuma K. Predicting dry weight change in Hemodialysis patients using machine learning. BMC Nephrol 2023; 24:196. [PMID: 37386392 PMCID: PMC10308746 DOI: 10.1186/s12882-023-03248-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Accepted: 06/19/2023] [Indexed: 07/01/2023] Open
Abstract
BACKGROUND Machine Learning has been increasingly used in the medical field, including managing patients undergoing hemodialysis. The random forest classifier is a Machine Learning method that can generate high accuracy and interpretability in the data analysis of various diseases. We attempted to apply Machine Learning to adjust dry weight, the appropriate volume status of patients undergoing hemodialysis, which requires a complex decision-making process considering multiple indicators and the patient's physical conditions. METHODS All medical data and 69,375 dialysis records of 314 Asian patients undergoing hemodialysis at a single dialysis center in Japan between July 2018 and April 2020 were collected from the electronic medical record system. Using the random forest classifier, we developed models to predict the probabilities of adjusting the dry weight at each dialysis session. RESULTS The areas under the receiver-operating-characteristic curves of the models for adjusting the dry weight upward and downward were 0.70 and 0.74, respectively. The average probability of upward adjustment of the dry weight had sharp a peak around the actual change over time, while the average probability of downward adjustment of the dry weight formed a gradual peak. Feature importance analysis revealed that median blood pressure decline was a strong predictor for adjusting the dry weight upward. In contrast, elevated serum levels of C-reactive protein and hypoalbuminemia were important indicators for adjusting the dry weight downward. CONCLUSIONS The random forest classifier should provide a helpful guide to predict the optimal changes to the dry weight with relative accuracy and may be useful in clinical practice.
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Affiliation(s)
- Hiroko Inoue
- Department of Nephrology, Graduate School of Medicine, Chiba University, Chuo-ku, Chiba, Japan
| | - Megumi Oya
- Department of Artificial Intelligence Medicine, Graduate School of Medicine, Chiba University, Chuo- ku, Chiba, Japan
- Advanced Data Science Project (ADSP), RIKEN Information R&D and Strategy Headquarters, RIKEN, Yokohama, Kanagawa, Japan
| | - Masashi Aizawa
- Department of Nephrology, Graduate School of Medicine, Chiba University, Chuo-ku, Chiba, Japan
| | - Kyogo Wagatsuma
- Department of Artificial Intelligence Medicine, Graduate School of Medicine, Chiba University, Chuo- ku, Chiba, Japan
- Advanced Data Science Project (ADSP), RIKEN Information R&D and Strategy Headquarters, RIKEN, Yokohama, Kanagawa, Japan
| | - Masatomo Kamimae
- Department of Artificial Intelligence Medicine, Graduate School of Medicine, Chiba University, Chuo- ku, Chiba, Japan
- Advanced Data Science Project (ADSP), RIKEN Information R&D and Strategy Headquarters, RIKEN, Yokohama, Kanagawa, Japan
| | - Yusuke Kashiwagi
- Department of Nephrology, Graduate School of Medicine, Chiba University, Chuo-ku, Chiba, Japan
| | - Masayoshi Ishii
- Department of Nephrology, Graduate School of Medicine, Chiba University, Chuo-ku, Chiba, Japan
- Department of Artificial Kidney, Chiba University Hospital, Chuo-ku, Chiba, Japan
| | - Hanae Wakabayashi
- Department of Nephrology, Graduate School of Medicine, Chiba University, Chuo-ku, Chiba, Japan
- Department of Artificial Kidney, Chiba University Hospital, Chuo-ku, Chiba, Japan
| | - Takayuki Fujii
- Department of Nephrology, Seirei Sakura Citizen hospital, Sakura, Chiba, Japan
| | - Satoshi Suzuki
- Department of Nephrology, Seirei Sakura Citizen hospital, Sakura, Chiba, Japan
| | - Noriyuki Hattori
- Department of Artificial Kidney, Chiba University Hospital, Chuo-ku, Chiba, Japan
- Department of Emergency and Critical Care Medicine, Graduate School of Medicine, Chiba University, Chiba, Japan
| | - Narihito Tatsumoto
- Department of Nephrology, Graduate School of Medicine, Chiba University, Chuo-ku, Chiba, Japan
| | - Eiryo Kawakami
- Department of Artificial Intelligence Medicine, Graduate School of Medicine, Chiba University, Chuo- ku, Chiba, Japan.
- Advanced Data Science Project (ADSP), RIKEN Information R&D and Strategy Headquarters, RIKEN, Yokohama, Kanagawa, Japan.
| | - Katsuhiko Asanuma
- Department of Nephrology, Graduate School of Medicine, Chiba University, Chuo-ku, Chiba, Japan.
- Department of Artificial Kidney, Chiba University Hospital, Chuo-ku, Chiba, Japan.
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Fan X, Wang J, Xia L, Qiu H, Tian Y, Zhangcai Y, Luo X, Gao Y, Li C, Wu Y, Zhao W, Chen J, Shi W, Yuan J, Ke S, Chen Y. Efficacy of endoscopic therapy for T1b esophageal cancer and construction of prognosis prediction model: a retrospective cohort study. Int J Surg 2023; 109:1708-1719. [PMID: 37132192 PMCID: PMC10389357 DOI: 10.1097/js9.0000000000000427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Accepted: 04/21/2023] [Indexed: 05/04/2023]
Abstract
BACKGROUND The efficacy of endoscopic therapy on the long-term survival outcomes of T1b oesophageal cancer (EC) is unclear, this study was designed to clarify the survival outcomes of endoscopic therapy and to construct a model for predicting the prognosis in T1b EC patients. METHODS This study was performed using the Surveillance, Epidemiology, and End Results (SEER) database from 2004 to 2017 of patients with T1bN0M0 EC. Cancer-specific survival (CSS) and overall survival (OS) were compared between endoscopic therapy group, esophagectomy group and chemoradiotherapy group, respectively. Stabilized inverse probability treatment weighting was used as the main analysis method. The propensity score matching method and an independent dataset from our hospital were used as sensitivity analysis. The least absolute shrinkage and selection operator regression (Lasso) was employed to sift variables. A prognostic model was then established and was verified in two external validation cohorts. RESULTS The unadjusted 5-year CSS was 69.5% (95% CI, 61.5-77.5) for endoscopic therapy, 75.0% (95% CI, 71.5-78.5) for esophagectomy and 42.4% (95% CI, 31.0-53.8) for chemoradiotherapy. After stabilized inverse probability treatment weighting adjustment, CSS and OS were similar in endoscopic therapy and esophagectomy groups ( P =0.32, P =0.83), while the CSS and OS of chemoradiotherapy patients were inferior to endoscopic therapy patients ( P <0.01, P <0.01). Age, histology, grade, tumour size, and treatment were selected to build the prediction model. The area under the curve of receiver operating characteristics of 1, 3, and 5 years in the validation cohort 1 were 0.631, 0.618, 0.638, and 0.733, 0.683, 0.768 in the validation cohort 2. The calibration plots also demonstrated the consistency of predicted and actual values in the two external validation cohorts. CONCLUSION Endoscopic therapy achieved comparable long-term survival outcomes to esophagectomy for T1b EC patients. The prediction model developed performed well in calculating the OS of patients with T1b EC.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | | | | | - Jingping Yuan
- Pathology, Renmin Hospital of Wuhan University, Wuhan, Hubei Province, P. R. China
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Spencer A, Samaan M, Noehren B. Monitoring Knee Contact Force with Force-Sensing Insoles. SENSORS (BASEL, SWITZERLAND) 2023; 23:4900. [PMID: 37430813 DOI: 10.3390/s23104900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 04/22/2023] [Accepted: 05/06/2023] [Indexed: 07/12/2023]
Abstract
Numerous applications exist for monitoring knee contact force (KCF) throughout activities of daily living. However, the ability to estimate these forces is restricted to a laboratory setting. The purposes of this study are to develop KCF metric estimation models and explore the feasibility of monitoring KCF metrics via surrogate measures derived from force-sensing insole data. Nine healthy subjects (3F, age 27 ± 5 years, mass 74.8 ± 11.8 kg, height 1.7 ± 0.08 m) walked at multiple speeds (0.8-1.6 m/s) on an instrumented treadmill. Thirteen insole force features were calculated as potential predictors of peak KCF and KCF impulse per step, estimated with musculoskeletal modeling. The error was calculated with median symmetric accuracy. Pearson product-moment correlation coefficients defined the relationship between variables. Models develop per-limb demonstrated lower prediction error than those developed per-subject (KCF impulse: 2.2% vs 3.4%; peak KCF: 3.50% vs. 6.5%, respectively). Many insole features are moderately to strongly associated with peak KCF, but not KCF impulse across the group. We present methods to directly estimate and monitor changes in KCF using instrumented insoles. Our results carry promising implications for internal tissue loads monitoring outside of a laboratory with wearable sensors.
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Affiliation(s)
- Alex Spencer
- Department of Physical Therapy, College of Health Sciences, University of Kentucky, Lexington, KY 40508, USA
- Department of Kinesiology & Health Promotion, College of Education, University of Kentucky, Lexington, KY 40508, USA
- Department of Biomedical Engineering, College of Engineering, University of Kentucky, Lexington, KY 40508, USA
| | - Michael Samaan
- Department of Kinesiology & Health Promotion, College of Education, University of Kentucky, Lexington, KY 40508, USA
- Department of Biomedical Engineering, College of Engineering, University of Kentucky, Lexington, KY 40508, USA
- Department of Orthopedic Surgery and Sports Medicine, College of Medicine, University of Kentucky, Lexington, KY 40508, USA
| | - Brian Noehren
- Department of Physical Therapy, College of Health Sciences, University of Kentucky, Lexington, KY 40508, USA
- Department of Orthopedic Surgery and Sports Medicine, College of Medicine, University of Kentucky, Lexington, KY 40508, USA
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Peimankar A, Winther TS, Ebrahimi A, Wiil UK. A Machine Learning Approach for Walking Classification in Elderly People with Gait Disorders. SENSORS (BASEL, SWITZERLAND) 2023; 23:679. [PMID: 36679471 PMCID: PMC9866459 DOI: 10.3390/s23020679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Revised: 12/25/2022] [Accepted: 01/02/2023] [Indexed: 06/17/2023]
Abstract
Walking ability of elderly individuals, who suffer from walking difficulties, is limited, which restricts their mobility independence. The physical health and well-being of the elderly population are affected by their level of physical activity. Therefore, monitoring daily activities can help improve the quality of life. This becomes especially a huge challenge for those, who suffer from dementia and Alzheimer's disease. Thus, it is of great importance for personnel in care homes/rehabilitation centers to monitor their daily activities and progress. Unlike normal subjects, it is required to place the sensor on the back of this group of patients, which makes it even more challenging to detect walking from other activities. With the latest advancements in the field of health sensing and sensor technology, a huge amount of accelerometer data can be easily collected. In this study, a Machine Learning (ML) based algorithm was developed to analyze the accelerometer data collected from patients with walking difficulties, who live in one of the municipalities in Denmark. The ML algorithm is capable of accurately classifying the walking activity of these individuals with different walking abnormalities. Various statistical, temporal, and spectral features were extracted from the time series data collected using an accelerometer sensor placed on the back of the participants. The back sensor placement is desirable in patients with dementia and Alzheimer's disease since they may remove visible sensors to them due to the nature of their diseases. Then, an evolutionary optimization algorithm called Particle Swarm Optimization (PSO) was used to select a subset of features to be used in the classification step. Four different ML classifiers such as k-Nearest Neighbors (kNN), Random Forest (RF), Stacking Classifier (Stack), and Extreme Gradient Boosting (XGB) were trained and compared on an accelerometry dataset consisting of 20 participants. These models were evaluated using the leave-one-group-out cross-validation (LOGO-CV) technique. The Stack model achieved the best performance with average sensitivity, positive predictive values (precision), F1-score, and accuracy of 86.85%, 93.25%, 88.81%, and 93.32%, respectively, to classify walking episodes. In general, the empirical results confirmed that the proposed models are capable of classifying the walking episodes despite the challenging sensor placement on the back of the patients, who suffer from walking disabilities.
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Hsieh WH, Ku CCY, Hwang HPC, Tsai MJ, Chen ZZ. Model for Predicting Complications of Hemodialysis Patients Using Data From the Internet of Medical Things and Electronic Medical Records. IEEE JOURNAL OF TRANSLATIONAL ENGINEERING IN HEALTH AND MEDICINE 2023; 11:375-383. [PMID: 37435541 PMCID: PMC10332468 DOI: 10.1109/jtehm.2023.3234207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/23/2022] [Revised: 10/24/2022] [Accepted: 12/28/2022] [Indexed: 09/30/2023]
Abstract
Intelligent models for predicting hemodialysis-related complications, i.e., hypotension and the deterioration of the quality or obstruction of the AV fistula, based on machine learning (ML) methods were established to offer early warnings to medical staff and give them enough time to provide pre-emptive treatment. A novel integration platform collected data from the Internet of Medical Things (IoMT) at a dialysis center and inspection results from electronic medical records (EMR) to train ML algorithms and build models. The selection of the feature parameters was implemented using Pearson's correlation method. Then, the eXtreme Gradient Boost (XGBoost) algorithm was chosen to create the predictive models and optimize the feature choice. 75% of collected data are used as a training dataset and the other 25% are used as a testing dataset. We adopted the prediction precision and recall rate of hypotension and AV fistula obstruction to measure the effectiveness of the predictive models. These rates were sufficiently high at approximately 71%-90%. In the context of hemodialysis, hypotension and the deterioration of the quality or obstruction of the arteriovenous (AV) fistula affect treatment quality and patient safety and may lead to a poor prognosis. Our prediction models with high accuracies can provide excellent references and signals for clinical healthcare service providers. Clinical and Translational Impact Statement-With the integrated dataset collected from IoMT and EMR, the superior predictive results of our models for complications of hemodialysis patients are demonstrated. We believe, after enough clinical tests are implemented as planned, these models can assist the healthcare team in making appropriate preparations in advance or adjusting the medical procedures to avoid these adverseevents.
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Affiliation(s)
- Wen-Huai Hsieh
- Department of SurgeryChang-Hua HospitalMinistry of Health and WelfareChanghua513007Taiwan
| | - Cooper Cheng-Yuan Ku
- Institute of Information Management, National Yang Ming Chiao Tung UniversityHsinchu300093Taiwan
| | - Humble Po-Ching Hwang
- Institute of Information Management, National Yang Ming Chiao Tung UniversityHsinchu300093Taiwan
| | - Min-Juei Tsai
- Department of NephrologyChang-Hua HospitalMinistry of Health and WelfareChanghua513007Taiwan
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Wang XZ, Wu HL, Wang T, Chen AQ, Sun HB, Ding ZW, Chang HY, Yu RQ. Rapid identification and semi-quantification of adulteration in walnut oil by using excitation–emission matrix fluorescence spectroscopy coupled with chemometrics and ensemble learning. J Food Compost Anal 2022. [DOI: 10.1016/j.jfca.2022.105094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Wu Y, Jia M, Xiang C, Fang Y. Latent trajectories of frailty and risk prediction models among geriatric community dwellers: an interpretable machine learning perspective. BMC Geriatr 2022; 22:900. [PMID: 36434518 PMCID: PMC9700973 DOI: 10.1186/s12877-022-03576-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 11/01/2022] [Indexed: 11/27/2022] Open
Abstract
BACKGROUND This study aimed to identify long-term frailty trajectories among older adults (≥65) and construct interpretable prediction models to assess the risk of developing abnormal frailty trajectory among older adults and examine significant factors related to the progression of frailty. METHODS This study retrospectively collected data from the Chinese Longitudinal Healthy Longevity and Happy Family Study between 2002 and 2018 (N = 4083). Frailty was defined by the frailty index. The whole study consisted of two phases of tasks. First, group-based trajectory modeling was used to identify frailty trajectories. Second, easy-to-access epidemiological data was utilized to construct machine learning algorithms including naïve bayes, logistic regression, decision tree, support vector machine, random forest, artificial neural network, and extreme gradient boosting to predict the risk of long-term frailty trajectories. Further, Shapley additive explanations was employed to identify feature importance and open-up the black box model of machine learning to further strengthen decision makers' trust in the model. RESULTS Two distinct frailty trajectories (stable-growth: 82.54%, rapid-growth: 17.46%) were identified. Compared with other algorithms, random forest performed relatively better in distinguishing the stable-growth and rapid-growth groups. Physical function including activities of daily living and instrumental activities of daily living, marital status, weight, and cognitive function were top five predictors. CONCLUSIONS Interpretable machine learning can achieve the primary goal of risk stratification and make it more transparent in individual prediction beneficial to primary screening and tailored prevention.
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Affiliation(s)
- Yafei Wu
- grid.12955.3a0000 0001 2264 7233School of Public Health, Xiamen University, Xiang’an Nan Road, Xiang’an District, Xiamen, 361102 Fujian China ,grid.12955.3a0000 0001 2264 7233National Institute for Data Science in Health and Medicine, Xiamen University, Xiamen, Fujian China ,grid.12955.3a0000 0001 2264 7233Key Laboratory of Health Technology Assessment of Fujian Province, School of Public Health, Xiamen University, Xiamen, Fujian China
| | - Maoni Jia
- grid.12955.3a0000 0001 2264 7233School of Public Health, Xiamen University, Xiang’an Nan Road, Xiang’an District, Xiamen, 361102 Fujian China ,grid.12955.3a0000 0001 2264 7233Key Laboratory of Health Technology Assessment of Fujian Province, School of Public Health, Xiamen University, Xiamen, Fujian China
| | - Chaoyi Xiang
- grid.12955.3a0000 0001 2264 7233School of Public Health, Xiamen University, Xiang’an Nan Road, Xiang’an District, Xiamen, 361102 Fujian China ,grid.12955.3a0000 0001 2264 7233Key Laboratory of Health Technology Assessment of Fujian Province, School of Public Health, Xiamen University, Xiamen, Fujian China
| | - Ya Fang
- grid.12955.3a0000 0001 2264 7233School of Public Health, Xiamen University, Xiang’an Nan Road, Xiang’an District, Xiamen, 361102 Fujian China ,grid.12955.3a0000 0001 2264 7233National Institute for Data Science in Health and Medicine, Xiamen University, Xiamen, Fujian China ,grid.12955.3a0000 0001 2264 7233Key Laboratory of Health Technology Assessment of Fujian Province, School of Public Health, Xiamen University, Xiamen, Fujian China
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Pasha Syed AR, Anbalagan R, Setlur AS, Karunakaran C, Shetty J, Kumar J, Niranjan V. Implementation of ensemble machine learning algorithms on exome datasets for predicting early diagnosis of cancers. BMC Bioinformatics 2022; 23:496. [DOI: 10.1186/s12859-022-05050-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Accepted: 11/10/2022] [Indexed: 11/19/2022] Open
Abstract
AbstractClassification of different cancer types is an essential step in designing a decision support model for early cancer predictions. Using various machine learning (ML) techniques with ensemble learning is one such method used for classifications. In the present study, various ML algorithms were explored on twenty exome datasets, belonging to 5 cancer types. Initially, a data clean-up was carried out on 4181 variants of cancer with 88 features, and a derivative dataset was obtained using natural language processing and probabilistic distribution. An exploratory dataset analysis using principal component analysis was then performed in 1 and 2D axes to reduce the high-dimensionality of the data. To significantly reduce the imbalance in the derivative dataset, oversampling was carried out using SMOTE. Further, classification algorithms such as K-nearest neighbour and support vector machine were used initially on the oversampled dataset. A 4-layer artificial neural network model with 1D batch normalization was also designed to improve the model accuracy. Ensemble ML techniques such as bagging along with using KNN, SVM and MLPs as base classifiers to improve the weighted average performance metrics of the model. However, due to small sample size, model improvement was challenging. Therefore, a novel method to augment the sample size using generative adversarial network (GAN) and triplet based variational auto encoder (TVAE) was employed that reconstructed the features and labels generating the data. The results showed that from initial scrutiny, KNN showed a weighted average of 0.74 and SVM 0.76. Oversampling ensured that the accuracy of the derivative dataset improved significantly and the ensemble classifier augmented the accuracy to 82.91%, when the data was divided into 70:15:15 ratio (training, test and holdout datasets). The overall evaluation metric value when GAN and TVAE increased the sample size was found to be 0.92 with an overall comparison model of 0.66. Therefore, the present study designed an effective model for classifying cancers which when implemented to real world samples, will play a major role in early cancer diagnosis.
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Khodabakhshi MB, Eslamyeh N, Sadredini SZ, Ghamari M. Cuffless blood pressure estimation using chaotic features of photoplethysmograms and parallel convolutional neural network. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2022; 226:107131. [PMID: 36137326 DOI: 10.1016/j.cmpb.2022.107131] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Revised: 08/26/2022] [Accepted: 09/13/2022] [Indexed: 06/16/2023]
Abstract
BACKGROUND AND OBJECTIVE As a nonlinear framework in dynamical system analysis, chaotic approaches are mainly applied to evolve the complexity of biological systems. Due to the chaotic nature of the cardiovascular systems, the nonlinear features can intuitively provide a reliable framework in blood pressure (BP) estimation. Cuffless BP estimation is usually carried out by establishing deep neural network models estimating the BP values through machine-learned features of photoplethysmogram (PPG) signals. METHODS In this study, a novel parallel deep architecture is proposed to handle the machine-learned and chaotic features of PPG signals in estimating the actual BP values. The chaotic handcrafted features were the signal properties associated with the Poincare sections in the phase space and the recurrence plot-based measures called recurrence quantification analysis (RQA). Moreover, the measures quantifying the nonlinear properties of the temporal sequences such as correlation dimension, fractal dimension, Lyapunov exponent, and entropy-based quantities were also employed. The parallel architecture not only embedded the chaotic nature of PPG signals but also provided a facility to include the pseudo-periodic variations of PPGs by utilizing a concatenating layer. RESULTS Our framework was examined on the public dataset, namely, Multi-Parameter Intelligent in Intensive Care II contained the recording of PPG, ECG and arterial blood pressure. The performance of the employed handcrafted features in distinguishing between the levels of BP values was investigated based on Spearman's statistics. In addition, our proposed scheme is evaluated in terms of Pearson's correlation coefficient (R), root mean square error (RMSE), and mean absolute error (MAE). The best performance was achieved when the employed handcrafted features accompanied by PPG sequences were applied to the parallel deep network. In particular, the values of R, RMSE, and MAE were obtained 0.9529, 2.76 mmHg, and 1.73 mmHg for diastolic BP, and 0.9444, 6.18 mmHg, and 3.8 mmHg for systolic BP, respectively. Moreover, based on the requirements of the standards set by the British Hypertension Society (BHS), the proposed scheme achieved a grade of A. CONCLUSIONS Our proposed scheme outperformed the state-of-the-art BP estimation methods. In addition, the results confirmed that the concatenation of the PPG-related machine-learned and nonlinear handcrafted features can be properly applied in continuous BP monitoring.
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Affiliation(s)
- Mohammad Bagher Khodabakhshi
- Department of Biomedical Engineering, Hamedan University of Technology, Mardom St, Shahid Fahmideh Blvd, Hamedan 6516913733, Iran.
| | - Naeem Eslamyeh
- Department of Biomedical Engineering, Hamedan University of Technology, Mardom St, Shahid Fahmideh Blvd, Hamedan 6516913733, Iran
| | - Seyede Zohreh Sadredini
- Department of Biomedical Engineering, Hamedan University of Technology, Mardom St, Shahid Fahmideh Blvd, Hamedan 6516913733, Iran
| | - Mohammad Ghamari
- Department of Computer Engineering, Hamedan University of Technology, Hamedan 6516913733, Iran
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Li Y, Zhao D, Liu G, Liu Y, Bano Y, Ibrohimov A, Chen H, Wu C, Chen X. Intradialytic hypotension prediction using covariance matrix-driven whale optimizer with orthogonal structure-assisted extreme learning machine. Front Neuroinform 2022; 16:956423. [PMID: 36387587 PMCID: PMC9659657 DOI: 10.3389/fninf.2022.956423] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Accepted: 09/28/2022] [Indexed: 09/19/2023] Open
Abstract
Intradialytic hypotension (IDH) is an adverse event occurred during hemodialysis (HD) sessions with high morbidity and mortality. The key to preventing IDH is predicting its pre-dialysis and administering a proper ultrafiltration prescription. For this purpose, this paper builds a prediction model (bCOWOA-KELM) to predict IDH using indices of blood routine tests. In the study, the orthogonal learning mechanism is applied to the first half of the WOA to improve the search speed and accuracy. The covariance matrix is applied to the second half of the WOA to enhance the ability to get out of local optimum and convergence accuracy. Combining the above two improvement methods, this paper proposes a novel improvement variant (COWOA) for the first time. More, the core of bCOWOA-KELM is that the binary COWOA is utilized to improve the performance of the KELM. In order to verify the comprehensive performance of the study, the paper sets four types of comparison experiments for COWOA based on 30 benchmark functions and a series of prediction experiments for bCOWOA-KELM based on six public datasets and the HD dataset. Finally, the results of the experiments are analyzed separately in this paper. The results of the comparison experiments prove fully that the COWOA is superior to other famous methods. More importantly, the bCOWOA performs better than its peers in feature selection and its accuracy is 92.41%. In addition, bCOWOA improves the accuracy by 0.32% over the second-ranked bSCA and by 3.63% over the worst-ranked bGWO. Therefore, the proposed model can be used for IDH prediction with future applications.
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Affiliation(s)
- Yupeng Li
- College of Computer Science and Technology, Changchun Normal University, Changchun, China
| | - Dong Zhao
- College of Computer Science and Technology, Changchun Normal University, Changchun, China
| | - Guangjie Liu
- College of Computer Science and Technology, Changchun Normal University, Changchun, China
| | - Yi Liu
- Department of Nephrology, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, China
| | - Yasmeen Bano
- Department of Nephrology, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, China
| | - Alisherjon Ibrohimov
- Department of Nephrology, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, China
| | - Huiling Chen
- College of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou, China
| | - Chengwen Wu
- College of Computer Science and Artificial Intelligence, Wenzhou University, Wenzhou, China
| | - Xumin Chen
- Department of Nephrology, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou University, Wenzhou, China
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Fatahi R, Nasiri H, Homafar A, Khosravi R, Siavoshi H, Chehreh Chelgani S. Modeling operational cement rotary kiln variables with explainable artificial intelligence methods – a “conscious lab” development. PARTICULATE SCIENCE AND TECHNOLOGY 2022. [DOI: 10.1080/02726351.2022.2135470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Rasoul Fatahi
- School of Mining Engineering, College of Engineering, University of Tehran, Tehran, Iran
| | - Hamid Nasiri
- Department of Computer Engineering, Amirkabir University of Technology, Tehran, Iran
| | - Arman Homafar
- Electrical and Computer Engineering Department, Semnan University, Semnan, Iran
| | - Rasoul Khosravi
- Department of Mining, Faculty of Engineering, Lorestan University, Khorramabad, Iran
| | - Hossein Siavoshi
- Department of Mining and Geological Engineering, University of Arizona, Tucson, USA
| | - Saeed Chehreh Chelgani
- Minerals and Metallurgical Engineering, Department of Civil, Environmental and Natural Resources Engineering, Luleå University of Technology, Sweden
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