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Gallo G, Imbimbo P, Aulitto M. The Undeniable Potential of Thermophiles in Industrial Processes. Int J Mol Sci 2024; 25:7685. [PMID: 39062928 PMCID: PMC11276739 DOI: 10.3390/ijms25147685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2024] [Revised: 07/05/2024] [Accepted: 07/07/2024] [Indexed: 07/28/2024] Open
Abstract
Extremophilic microorganisms play a key role in understanding how life on Earth originated and evolved over centuries. Their ability to thrive in harsh environments relies on a plethora of mechanisms developed to survive at extreme temperatures, pressures, salinity, and pH values. From a biotechnological point of view, thermophiles are considered a robust tool for synthetic biology as well as a reliable starting material for the development of sustainable bioprocesses. This review discusses the current progress in the biomanufacturing of high-added bioproducts from thermophilic microorganisms and their industrial applications.
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Affiliation(s)
- Giovanni Gallo
- Division of Microbiology, Faculty of Biology, Ludwig-Maximilians-Universität München, 82152 Martinsried, Germany;
| | - Paola Imbimbo
- Department of Chemical Sciences, University of Napoli Federico II, Complesso Universitario Monte Sant’Angelo, 80126 Napoli, Italy
| | - Martina Aulitto
- Department of Biology, University of Napoli Federico II, Complesso Universitario Monte Sant’Angelo, 80126 Napoli, Italy
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Thompson JC, Zavala VM, Venturelli OS. Integrating a tailored recurrent neural network with Bayesian experimental design to optimize microbial community functions. PLoS Comput Biol 2023; 19:e1011436. [PMID: 37773951 PMCID: PMC10540976 DOI: 10.1371/journal.pcbi.1011436] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Accepted: 08/16/2023] [Indexed: 10/01/2023] Open
Abstract
Microbiomes interact dynamically with their environment to perform exploitable functions such as production of valuable metabolites and degradation of toxic metabolites for a wide range of applications in human health, agriculture, and environmental cleanup. Developing computational models to predict the key bacterial species and environmental factors to build and optimize such functions are crucial to accelerate microbial community engineering. However, there is an unknown web of interactions that determine the highly complex and dynamic behavior of these systems, which precludes the development of models based on known mechanisms. By contrast, entirely data-driven machine learning models can produce physically unrealistic predictions and often require significant amounts of experimental data to learn system behavior. We develop a physically-constrained recurrent neural network that preserves model flexibility but is constrained to produce physically consistent predictions and show that it can outperform existing machine learning methods in the prediction of certain experimentally measured species abundance and metabolite concentrations. Further, we present a closed-loop, Bayesian experimental design algorithm to guide data collection by selecting experimental conditions that simultaneously maximize information gain and target microbial community functions. Using a bioreactor case study, we demonstrate how the proposed framework can be used to efficiently navigate a large design space to identify optimal operating conditions. The proposed methodology offers a flexible machine learning approach specifically tailored to optimize microbiome target functions through the sequential design of informative experiments that seek to explore and exploit community functions.
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Affiliation(s)
- Jaron C. Thompson
- Department of Chemical and Biological Engineering, University of Wisconsin-Madison, Madison, Wisconsin, United States of America
- Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, United States of America
| | - Victor M. Zavala
- Department of Chemical and Biological Engineering, University of Wisconsin-Madison, Madison, Wisconsin, United States of America
| | - Ophelia S. Venturelli
- Department of Chemical and Biological Engineering, University of Wisconsin-Madison, Madison, Wisconsin, United States of America
- Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, United States of America
- Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America
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Ceron-Chafla P, de Vrieze J, Rabaey K, van Lier JB, Lindeboom REF. Steering the product spectrum in high-pressure anaerobic processes: CO 2 partial pressure as a novel tool in biorefinery concepts. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2023; 16:27. [PMID: 36803622 PMCID: PMC9938588 DOI: 10.1186/s13068-023-02262-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 01/05/2023] [Indexed: 02/19/2023]
Abstract
BACKGROUND Elevated CO2 partial pressure (pCO2) has been proposed as a potential steering parameter for selective carboxylate production in mixed culture fermentation. It is anticipated that intermediate product spectrum and production rates, as well as changes in the microbial community, are (in)directly influenced by elevated pCO2. However, it remains unclear how pCO2 interacts with other operational conditions, namely substrate specificity, substrate-to-biomass (S/X) ratio and the presence of an additional electron donor, and what effect pCO2 has on the exact composition of fermentation products. Here, we investigated possible steering effects of elevated pCO2 combined with (1) mixed substrate (glycerol/glucose) provision; (2) subsequent increments in substrate concentration to increase the S/X ratio; and (3) formate as an additional electron donor. RESULTS Metabolite predominance, e.g., propionate vs. butyrate/acetate, and cell density, depended on interaction effects between pCO2-S/X ratio and pCO2-formate. Individual substrate consumption rates were negatively impacted by the interaction effect between pCO2-S/X ratio and were not re-established after lowering the S/X ratio and adding formate. The product spectrum was influenced by the microbial community composition, which in turn, was modified by substrate type and the interaction effect between pCO2-formate. High propionate and butyrate levels strongly correlated with Negativicutes and Clostridia predominance, respectively. After subsequent pressurized fermentation phases, the interaction effect between pCO2-formate enabled a shift from propionate towards succinate production when mixed substrate was provided. CONCLUSIONS Overall, interaction effects between elevated pCO2, substrate specificity, high S/X ratio and availability of reducing equivalents from formate, rather than an isolated pCO2 effect, modified the proportionality of propionate, butyrate and acetate in pressurized mixed substrate fermentations at the expense of reduced consumption rates and increased lag-phases. The interaction effect between elevated pCO2 and formate was beneficial for succinate production and biomass growth with a glycerol/glucose mixture as the substrate. The positive effect may be attributed to the availability of extra reducing equivalents, likely enhanced carbon fixating activity and hindered propionate conversion due to increased concentration of undissociated carboxylic acids.
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Affiliation(s)
- Pamela Ceron-Chafla
- Sanitary Engineering Section, Department of Water Management, Delft University of Technology, Stevinweg 1, 2628 CN, Delft, The Netherlands.
| | - Jo de Vrieze
- grid.5342.00000 0001 2069 7798Center for Microbial Ecology and Technology (CMET), Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - Korneel Rabaey
- grid.5342.00000 0001 2069 7798Center for Microbial Ecology and Technology (CMET), Ghent University, Coupure Links 653, 9000 Ghent, Belgium ,grid.510907.aCenter for Advanced Process Technology for Urban Resource Recovery (CAPTURE), Coupure Links 653, 9000 Ghent, Belgium
| | - Jules B. van Lier
- grid.5292.c0000 0001 2097 4740Sanitary Engineering Section, Department of Water Management, Delft University of Technology, Stevinweg 1, 2628 CN Delft, The Netherlands
| | - Ralph E. F. Lindeboom
- grid.5292.c0000 0001 2097 4740Sanitary Engineering Section, Department of Water Management, Delft University of Technology, Stevinweg 1, 2628 CN Delft, The Netherlands
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Annie Modestra J, Matsakas L, Rova U, Christakopoulos P. Prospects and trends in bioelectrochemical systems: Transitioning from CO 2 towards a low-carbon circular bioeconomy. BIORESOURCE TECHNOLOGY 2022; 364:128040. [PMID: 36182019 DOI: 10.1016/j.biortech.2022.128040] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2022] [Revised: 09/22/2022] [Accepted: 09/23/2022] [Indexed: 06/16/2023]
Abstract
Resource scarcity and climate change are the most quested topics in view of environmental sustainability. CO2 sequestration through bioelectrochemical systems is an attractive option for fostering bioeconomy development upon several value-added products generation. This review details the state-of-the-art of bioelectrochemical systems for resource recovery from CO2 along with various biocatalysts capable of utilizing CO2. Two bioprocesses (photo-electrosynthesis and chemolithoelectrosynthesis) were discussed projecting their potential for biobased economy development from CO2. Significance of adopting circular strategies for efficient resource recycling, intensifying product value, integrations/interlinking of multiple process chains for the development of circular bioeconomy were discussed. Existing constrains as well as outlook for near establishment of circular bioeconomy from CO2 is presented by weighing fore-sighted plans with current actions. Need for developing CO2-based circular bioeconomy via innovative business models by analyzing social, technical, environmental and product related aspects are also discussed providing a roadmap of gaps to pursue for attaining practicality.
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Affiliation(s)
- J Annie Modestra
- Biochemical Process Engineering, Division of Chemical Engineering, Department of Civil, Environmental, and Natural Resources Engineering, Luleå University of Technology, 971‑87, Luleå, Sweden
| | - Leonidas Matsakas
- Biochemical Process Engineering, Division of Chemical Engineering, Department of Civil, Environmental, and Natural Resources Engineering, Luleå University of Technology, 971‑87, Luleå, Sweden.
| | - Ulrika Rova
- Biochemical Process Engineering, Division of Chemical Engineering, Department of Civil, Environmental, and Natural Resources Engineering, Luleå University of Technology, 971‑87, Luleå, Sweden
| | - Paul Christakopoulos
- Biochemical Process Engineering, Division of Chemical Engineering, Department of Civil, Environmental, and Natural Resources Engineering, Luleå University of Technology, 971‑87, Luleå, Sweden
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5
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Zhu X, Lei C, Qi J, Zhen G, Lu X, Xu S, Zhang J, Liu H, Zhang X, Wu Z. The role of microbiome in carbon sequestration and environment security during wastewater treatment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 837:155793. [PMID: 35550899 DOI: 10.1016/j.scitotenv.2022.155793] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2021] [Revised: 05/04/2022] [Accepted: 05/05/2022] [Indexed: 06/15/2023]
Abstract
Wastewater treatment is an essential aspect of the earth's sustainable future. However, different wastewater treatment methods are responsible for carbon discharge into the environment, raising environmental risks. Hence, such wastewater treatment methods are required that can minimize carbon release without compromising the treatment quality. Microbiome-based carbon sequestration is a potential method for achieving this goal. Limited studies have been carried out to investigate how microbes can capture and utilize CO2. This review summarizes the approaches including microbial electrolytic carbon capture, microbial electrosynthesis, microbial fuel cell, microalgae cultivation, and constructed wetlands that employ microbes to capture and utilize CO2. Electroactive Bacteria (EAB) convert carbon dioxide to carbonates and bicarbonates in subsequent steps after organic matter decomposition. Similarly, microbial electrosynthesis (MES) not only helps capture carbon but also produces secondary products (production of polyhydroxyalkanoates by Gram-negative rod Aeromonas hydrophila bacteria) of commercial importance during wastewater treatment. In addition to this, microbial carbon capture cells (MCCs) have been now utilized for energy generation and carbon sequestration at the same time during wastewater treatment. Moreover, microalgae cultivation has also been found to capture CO2 at a rapid pace while releasing O2 as a consequence of photosynthesis. Hence, microbe-based wastewater treatment has quite a potential due to two-fold benefits like carbon sequestration and by-product formation.
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Affiliation(s)
- Xuefeng Zhu
- School of Environment and Architecture, University of Shanghai for Science and Technology, Shanghai 200093, PR China.
| | - Cheng Lei
- School of Environment and Architecture, University of Shanghai for Science and Technology, Shanghai 200093, PR China
| | - Jing Qi
- School of Environment and Architecture, University of Shanghai for Science and Technology, Shanghai 200093, PR China
| | - Guangyin Zhen
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China
| | - Xueqin Lu
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China
| | - Suyun Xu
- School of Environment and Architecture, University of Shanghai for Science and Technology, Shanghai 200093, PR China
| | - Jie Zhang
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China.
| | - Hongbo Liu
- School of Environment and Architecture, University of Shanghai for Science and Technology, Shanghai 200093, PR China.
| | - Xuedong Zhang
- Department of Environmental Engineering, Faculty of Environment and Civil Engineering, Jiangnan University, Wuxi 214122, PR China
| | - Zhichao Wu
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China
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Sivalingam V, Winkler D, Haugen T, Wentzel A, Dinamarca C. Syngas fermentation and microbial electrosynthesis integration as a single process unit. BIORESOURCE TECHNOLOGY 2022; 356:127314. [PMID: 35580790 DOI: 10.1016/j.biortech.2022.127314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 05/11/2022] [Accepted: 05/12/2022] [Indexed: 06/15/2023]
Abstract
Industrially relevant syngas (15 % CO, 15% H2, 20% N2 in 50% CO2) fermentation and microbial electrosynthesis were integrated as a single process unit in open and closed-circuit modes. This study examined the impact of electrochemical reducing power from -50 to -400 mV on the acetic acid synthesis and CO inhibition on fermentation. -150 mV vs. Ag/AgCl (3.0 NaCl) was identified as the lowest benchmark potential for improved acetic acid synthesis rate (0.263 mmol L-1h-1), which is 15-fold higher than the open circuit mode's rate. No significant inhibition by CO in the fermentation was observed, while 60% of the gas was consumed. Anodic potential above 2.0 V substantially lowered the product formation. Superseding the fermentation medium with fresh inoculum through a fed-batch operation helped lower the anodic potential.
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Affiliation(s)
- Vasan Sivalingam
- Department of Process, Energy and Environmental Technology, University of South-Eastern Norway, Norway
| | - Dietmar Winkler
- Department of Electrical Engineering, Information Technology and Cybernetics, University of South-Eastern Norway
| | - Tone Haugen
- Department of Biotechnology and Nanomedicine, SINTEF Industry, Trondheim, Norway
| | - Alexander Wentzel
- Department of Biotechnology and Nanomedicine, SINTEF Industry, Trondheim, Norway
| | - Carlos Dinamarca
- Department of Process, Energy and Environmental Technology, University of South-Eastern Norway, Norway.
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Complete genome sequence of Pseudomonas stutzeri S116 owning bifunctional catalysis provides insights into affecting performance of microbial fuel cells. BMC Microbiol 2022; 22:137. [PMID: 35590268 PMCID: PMC9118636 DOI: 10.1186/s12866-022-02552-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Accepted: 05/03/2022] [Indexed: 12/03/2022] Open
Abstract
Background Pseudomonas stutzeri S116 is a sulfur-oxidizing bacteria isolated from marine sludge. It exhibited excellent electricity generation as bioanode and biocathode applied in microbial fuel cells (MFCs). Complete genome sequencing of P. stutzeri and cyclic voltammetry method were performed to reveal its mechanism in microbial fuel cells system. Results This study indicated that the MFCs generated a maximum output voltage of 254.2 mV and 226.0 mV, and maximum power density of 765 mW/m2 and 656.6 mW/m2 respectively. Complete genome sequencing of P. stutzeri S116 was performed to indicate that most function genes showed high similarities with P. stutzeri, and its primary annotations were associated with energy production and conversion (6.84%), amino acid transport and metabolism (6.82%) and inorganic ion transport and metabolism (6.77%). Homology of 36 genes involved in oxidative phosphorylation was detected, which suggests the strain S116 possesses an integrated electron transport chain. Additionally, many genes encoding pilus-assembly proteins and redox mediators (riboflavin and phenazine) were detected in the databases. Thiosulfate oxidization and dissimilatory nitrate reduction were annotated in the sulfur metabolism pathway and nitrogen metabolism pathway, respectively. Gene function analysis and cyclic voltammetry indicated that P. stutzeri probably possesses cellular machinery such as cytochrome c and redox mediators and can perform extracellular electron transfer and produce electricity in MFCs. Conclusion The redox mediators secreted by P. stutzeri S116 were probably responsible for performance of MFCs. The critical genes and metabolic pathways involved in thiosulfate oxide and nitrate reduction were detected, which indicated that the strain can treat wastewater containing sulfide and nitrite efficiently. Supplementary Information The online version contains supplementary material available at 10.1186/s12866-022-02552-8.
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Zhang Y, Pan X, Zuo J, Hu J. Production of n-caproate using food waste through thermophilic fermentation without addition of external electron donors. BIORESOURCE TECHNOLOGY 2022; 343:126144. [PMID: 34673194 DOI: 10.1016/j.biortech.2021.126144] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Revised: 09/04/2021] [Accepted: 09/07/2021] [Indexed: 06/13/2023]
Abstract
The effectiveness of producing n-caproate from food waste without external electron donors (EDs) was investigated through batch and semi-continuous fermentation. The maximum concentration of n-caproate reached 10,226.28 mg COD/L during semi-continuous fermentation. The specificity for n-caproate was the highest at 40.19 ± 3.95%, and the soluble COD conversion rate of n-caproate reached up to 22.50 ± 1.09% at the end of batch fermentation. The production of n-caproate was coupled with the generation of lactate as an ED to facilitate chain elongation reactions. When lactate was used as the only substrate, n-butyrate (64.12 ± 20.11%) markedly dominated the products, instead of n-caproate (0.63 ± 0.07%). Microbial community analysis revealed that Caproiciproducens, Rummeliibacillus, and Clostridium_sensu_stricto_12 were the key genera related to n-caproate production. In addition to n-caproate, n-butyrate dominated the products in batch and semi-continuous fermentation with a maximum specificity of 47.59 ± 3.39%. Clostridium_sensu_stricto_7 was committed to producing n-butyrate from lactate.
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Affiliation(s)
- Yanyan Zhang
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Xinrong Pan
- College of Biology and Environmental Engineering, Zhejiang Shuren University, Hangzhou 310015, China
| | - Jiane Zuo
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China; Tsinghua Shenzhen International Graduate School, Shenzhen 518055, China.
| | - Jiamin Hu
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
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Microbial Ecological Mechanism for Long-Term Production of High Concentrations of n-Caproate via Lactate-Driven Chain Elongation. Appl Environ Microbiol 2021; 87:AEM.03075-20. [PMID: 33741616 DOI: 10.1128/aem.03075-20] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Accepted: 03/10/2021] [Indexed: 12/11/2022] Open
Abstract
Lactate-driven chain elongation (LCE) has emerged as a new biotechnology to upgrade organic waste streams into a valuable biochemical and fuel precursor, medium-chain carboxylate, n-caproate. Considering that a low cost of downstream extraction is critical for biorefinery technology, a high concentration of n-caproate production is very important to improve the scale-up of the LCE process. We report here that in a nonsterile open environment, the n-caproate concentration was increased from the previous record of 25.7 g·liter-1 to a new high level of 33.7 g·liter-1 (76.8 g chemical oxygen demand [COD]·liter - 1), with the highest production rate being 11.5 g·liter-1·day-1 (26.2 g COD·liter - 1·day-1). In addition, the LCE process remained stable, with an average concentration of n-caproate production of 20.2 ± 5.62 g·liter-1 (46.1 ± 12.8 g COD·liter - 1) for 780 days. Dynamic changes in taxonomic composition integrated with metagenomic data reveal the microbial ecology for long-term production of high concentrations of n-caproate: (i) the core microbiome is related to efficient functional groups, such as Ruminococcaceae (with functional strain CPB6); (ii) the core bacteria can maintain stability for long-term operation; (iii) the microbial network has relatively low microbe-microbe interaction strength; and (iv) low relative abundance and variety of competitors. The network structure could be shaped by hydraulic retention time (HRT) over time, and long-term operation at an HRT of 8 days displayed higher efficacy.IMPORTANCE Our research revealed the microbial network of the LCE reactor microbiome for n-caproate production at high concentrations, which will provide a foundation for designing or engineering the LCE reactor microbiome to recover n-caproate from organic waste streams in the future. In addition, the hypothetical model of the reactor microbiome that we proposed may offer guidance for researchers to find the underlying microbial mechanism when they encounter low-efficiency n-caproate production from the LCE process. We anticipate that our research will rapidly advance LCE biotechnology with the goal of promoting the sustainable development of human society.
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Chandrasekhar K, Naresh Kumar A, Kumar G, Kim DH, Song YC, Kim SH. Electro-fermentation for biofuels and biochemicals production: Current status and future directions. BIORESOURCE TECHNOLOGY 2021; 323:124598. [PMID: 33401164 DOI: 10.1016/j.biortech.2020.124598] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2020] [Revised: 12/16/2020] [Accepted: 12/18/2020] [Indexed: 06/12/2023]
Abstract
Electro-fermentation is an emerging bioporcess that could regulate the metabolism of electrochemically active microorganisms. The provision of electrodes for the fermentation process that functions as an electron acceptor and supports the formation and transportation of electrons and protons, consequently producing bioelectricity and value-added chemicals. The traditional method of fermentation has several limitations in usability and economic feasibility. Subsequently, a series of metabolic processes occurring in conventional fermentation processes are most often redox misaligned. In this regard, electro-fermentation emerged as a hybrid technology which can regulate a series of metabolic processes occurring in a bioreactor by regulating the redox instabilities and boosting the overall metabolic process towards high biomass yield and enhanced product formation. The present article deals with microorganisms-electrode interactions, various types of electro-fermentation systems, comparative evaluation of pure and mixed culture electro-fermentation application, and value-added fuels and chemical synthesis.
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Affiliation(s)
- K Chandrasekhar
- School of Civil and Environmental Engineering, Yonsei University, Seoul 03722, Republic of Korea
| | - A Naresh Kumar
- School of Civil and Environmental Engineering, Yonsei University, Seoul 03722, Republic of Korea
| | - Gopalakrishnan Kumar
- School of Civil and Environmental Engineering, Yonsei University, Seoul 03722, Republic of Korea; Institute of Chemistry, Bioscience and Environmental Engineering, Faculty of Science and Technology, University of Stavanger, 4036 Stavanger, Norway
| | - Dong-Hoon Kim
- Department of Civil Engineering, Inha University, 100 Inha-ro, Nam-gu, Incheon 22212, Republic of Korea
| | - Young-Chae Song
- Department of Environmental Engineering, Korea Maritime and Ocean University, Busan 49112, Republic of Korea
| | - Sang-Hyoun Kim
- School of Civil and Environmental Engineering, Yonsei University, Seoul 03722, Republic of Korea.
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Kumar Awasthi M, Ravindran B, Sarsaiya S, Chen H, Wainaina S, Singh E, Liu T, Kumar S, Pandey A, Singh L, Zhang Z. Metagenomics for taxonomy profiling: tools and approaches. Bioengineered 2020; 11:356-374. [PMID: 32149573 PMCID: PMC7161568 DOI: 10.1080/21655979.2020.1736238] [Citation(s) in RCA: 78] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2019] [Revised: 02/20/2020] [Accepted: 02/21/2020] [Indexed: 12/25/2022] Open
Abstract
The study of metagenomics is an emerging field that identifies the total genetic materials in an organism along with the set of all genetic materials like deoxyribonucleic acid and ribose nucleic acid, which play a key role with the maintenance of cellular functions. The best part of this technology is that it gives more flexibility to environmental microbiologists to instantly pioneer the immense genetic variability of microbial communities. However, it is intensively complex to identify the suitable sequencing measures of any specific gene that can exclusively indicate the involvement of microbial metagenomes and be able to advance valuable results about these communities. This review provides an overview of the metagenomic advancement that has been advantageous for aggregation of more knowledge about specific genes, microbial communities and its metabolic pathways. More specific drawbacks of metagenomes technology mainly depend on sequence-based analysis. Therefore, this 'targeted based metagenomics' approach will give comprehensive knowledge about the ecological, evolutionary and functional sequence of significantly important genes that naturally exist in living beings either human, animal and microorganisms from distinctive ecosystems.
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Affiliation(s)
- Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province, China
- Swedish Centre for Resource Recovery, University of Borås, Borås, Sweden
| | - B. Ravindran
- Department of Environmental Energy and Engineering, Kyonggi University Youngtong-Gu, Suwon, South Korea
| | - Surendra Sarsaiya
- Key Laboratory of Basic Pharmacology of Ministry of Education, Zunyi Medical University, Zunyi, Guizhou, China
| | - Hongyu Chen
- Institute of Biology, Freie Universität Berlin Altensteinstr, Berlin, Germany
| | - Steven Wainaina
- Swedish Centre for Resource Recovery, University of Borås, Borås, Sweden
| | - Ekta Singh
- CSIR-National Environmental Engineering Research Institute, Nagpur, India
| | - Tao Liu
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province, China
| | - Sunil Kumar
- CSIR-National Environmental Engineering Research Institute, Nagpur, India
| | - Ashok Pandey
- Centre for Innovation and Translational Research CSIR-Indian Institute of Toxicology Research, Lucknow, India
| | - Lal Singh
- CSIR-National Environmental Engineering Research Institute, Nagpur, India
| | - Zengqiang Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province, China
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Adjusting Organic Load as a Strategy to Direct Single-Stage Food Waste Fermentation from Anaerobic Digestion to Chain Elongation. Processes (Basel) 2020. [DOI: 10.3390/pr8111487] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
Production of medium chain carboxylic acids (MCCA) as renewable feedstock bio-chemicals, from food waste (FW), requires complicated reactor configurations and supplementation of chemicals to achieve product selectivity. This study evaluated the manipulation of organic loading rate in an un-supplemented, single stage stirred tank reactor to steer an anaerobic digestion (AD) microbiome towards acidogenic fermentation (AF), and thence to chain elongation. Increasing substrate availability by switching to a FW feedstock with a higher COD stimulated chain elongation. The MCCA species n-caproic (10.1 ± 1.7 g L−1) and n-caprylic (2.9 ± 0.8 g L−1) acid were produced at concentrations comparable to more complex reactor set-ups. As a result, of the adjusted operating strategy, a more specialised microbiome developed containing several MCCA-producing bacteria, lactic acid-producing Olsenella spp. and hydrogenotrophic methanogens. By contrast, in an AD reactor that was operated in parallel to produce biogas, the retention times had to be doubled when fed with the high-COD FW to maintain biogas production. The AD microbiome comprised a diverse mixture of hydrolytic and acidogenic bacteria, and acetoclastic methanogens. The results suggest that manipulation of organic loading rate and food-to-microorganism ratio may be used as an operating strategy to direct an AD microbiome towards AF, and to stimulate chain elongation in FW fermentation, using a simple, un-supplemented stirred tank set-up. This outcome provides the opportunity to repurpose existing AD assets operating on food waste for biogas production, to produce potentially higher value MCCA products, via simple manipulation of the feeding strategy.
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Abstract
Acetogens are anaerobic bacteria capable of fixing CO2 or CO to produce acetyl-CoA and ultimately acetate using the Wood-Ljungdahl pathway (WLP). This autotrophic metabolism plays a major role in the global carbon cycle and, if harnessed, can help reduce greenhouse gas emissions. Overall, the data presented here provide a framework for examining the ecology and evolution of the Acetobacterium genus and highlight the potential of these species as a source for production of fuels and chemicals from CO2 feedstocks. Acetogens are anaerobic bacteria capable of fixing CO2 or CO to produce acetyl coenzyme A (acetyl-CoA) and ultimately acetate using the Wood-Ljungdahl pathway (WLP). Acetobacterium woodii is the type strain of the Acetobacterium genus and has been critical for understanding the biochemistry and energy conservation in acetogens. Members of the Acetobacterium genus have been isolated from a variety of environments or have had genomes recovered from metagenome data, but no systematic investigation has been done on the unique and various metabolisms of the genus. To gain a better appreciation for the metabolic breadth of the genus, we sequenced the genomes of 4 isolates (A. fimetarium, A. malicum, A. paludosum, and A. tundrae) and conducted a comparative genome analysis (pan-genome) of 11 different Acetobacterium genomes. A unifying feature of the Acetobacterium genus is the carbon-fixing WLP. The methyl (cluster II) and carbonyl (cluster III) branches of the Wood-Ljungdahl pathway are highly conserved across all sequenced Acetobacterium genomes, but cluster I encoding the formate dehydrogenase is not. In contrast to A. woodii, all but four strains encode two distinct Rnf clusters, Rnf being the primary respiratory enzyme complex. Metabolism of fructose, lactate, and H2:CO2 was conserved across the genus, but metabolism of ethanol, methanol, caffeate, and 2,3-butanediol varied. Additionally, clade-specific metabolic potential was observed, such as amino acid transport and metabolism in the psychrophilic species, and biofilm formation in the A. wieringae clade, which may afford these groups an advantage in low-temperature growth or attachment to solid surfaces, respectively. IMPORTANCE Acetogens are anaerobic bacteria capable of fixing CO2 or CO to produce acetyl-CoA and ultimately acetate using the Wood-Ljungdahl pathway (WLP). This autotrophic metabolism plays a major role in the global carbon cycle and, if harnessed, can help reduce greenhouse gas emissions. Overall, the data presented here provide a framework for examining the ecology and evolution of the Acetobacterium genus and highlight the potential of these species as a source for production of fuels and chemicals from CO2 feedstocks.
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Grimalt-Alemany A, Łężyk M, Asimakopoulos K, Skiadas IV, Gavala HN. Cryopreservation and fast recovery of enriched syngas-converting microbial communities. WATER RESEARCH 2020; 177:115747. [PMID: 32283432 DOI: 10.1016/j.watres.2020.115747] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Revised: 03/17/2020] [Accepted: 03/20/2020] [Indexed: 06/11/2023]
Abstract
Over the last decades, the use of mixed microbial communities has attracted increasing scientific attention due to their potential biotechnological applications in several emerging technological platforms such as the carboxylate, bioplastic, syngas and bio-electrochemical synthesis platforms. However, this increasing interest has not been accompanied by a parallel development of suitable cryopreservation techniques for microbial communities. While cryopreservation methods for the long-term storage of axenic cultures are well established, their effectiveness in preserving the microbial diversity and functionality of microbial communities has rarely been studied. In this study, the effect of the addition of different cryopreservation agents on the long-term storage of microbial communities at -80 °C was studied using a stable enrichment culture converting syngas into acetate and ethanol. The cryopreservation agents considered in the study were glycerol, dimethylsulfoxide, polyvinylpyrrolidone, Tween 80 and yeast extract, as well as with no addition of cryopreservation agent. Their effectiveness was evaluated based on the microbial activity recovery and the maintenance of the microbial diversity and community structure upon revival of the microbial community. The results showed that the commonly used glycerol and no addition of cryopreservation agent were the least recommendable methods for the long-term frozen storage of microbial communities, while Tween 80 and polyvinylpyrrolidone were overall the most effective. Among the cryoprotectants studied, polyvinylpyrrolidone and especially Tween 80 were the only ones assuring reproducible results in terms of microbial activity recovery and microbial community structure preservation.
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Affiliation(s)
- Antonio Grimalt-Alemany
- Department of Chemical and Biochemical Engineering, Technical University of Denmark, Søltofts Plads 229, 2800 Kgs, Lyngby, Denmark
| | - Mateusz Łężyk
- Institute of Environmental Engineering and Building Installations, Faculty of Environmental Engineering and Energy, Poznan University of Technology, Berdychowo 4, 60-965, Poznań, Poland
| | - Konstantinos Asimakopoulos
- Department of Chemical and Biochemical Engineering, Technical University of Denmark, Søltofts Plads 229, 2800 Kgs, Lyngby, Denmark
| | - Ioannis V Skiadas
- Department of Chemical and Biochemical Engineering, Technical University of Denmark, Søltofts Plads 229, 2800 Kgs, Lyngby, Denmark
| | - Hariklia N Gavala
- Department of Chemical and Biochemical Engineering, Technical University of Denmark, Søltofts Plads 229, 2800 Kgs, Lyngby, Denmark.
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15
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Jung S, Lee J, Park YK, Kwon EE. Bioelectrochemical systems for a circular bioeconomy. BIORESOURCE TECHNOLOGY 2020; 300:122748. [PMID: 31937485 DOI: 10.1016/j.biortech.2020.122748] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2019] [Revised: 01/03/2020] [Accepted: 01/04/2020] [Indexed: 06/10/2023]
Abstract
In the past two decades, bioelectrochemical systems (BESs) have received a considerable attention as a way of transforming wastewater directly to electricity and chemicals. Since BESs are capable of energy and chemical production by removing wastewater, these systems are considered promising sustainable waste-to-energy/chemical platforms and parts of circular bioeconomy. For the estimation of practical applicability of BESs in the circular bioeconomy, economic assessment of these systems is reviewed in this work. This estimation is necessary to decide whether BESs can be further developed for commercialization or there is any limiting factor for making the systems commercially viable in circular bioeconomy. This review also presents current developments of BESs, providing a critical review of the current status and challenges of techno-economic analysis for BESs. The results highlight the key factors to suggest the future research directions to make BESs economically available as a part of promising circular bioeconomy.
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Affiliation(s)
- Sungyup Jung
- Department of Environment and Energy, Sejong University, Seoul 05006, Republic of Korea
| | - Jechan Lee
- Department of Environmental and Safety Engineering, Ajou University, Suwon 16499, Republic of Korea
| | - Young-Kwon Park
- School of Environmental Engineering, University of Seoul, Seoul 02504, Republic of Korea
| | - Eilhann E Kwon
- Department of Environment and Energy, Sejong University, Seoul 05006, Republic of Korea.
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16
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Banu JR, Kumar MD, Gunasekaran M, Kumar G. Biopolymer production in bio electrochemical system: Literature survey. ACTA ACUST UNITED AC 2019. [DOI: 10.1016/j.biteb.2019.100283] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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17
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San-Valero P, Fernández-Naveira Á, Veiga MC, Kennes C. Influence of electron acceptors on hexanoic acid production by Clostridium kluyveri. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2019; 242:515-521. [PMID: 31075646 DOI: 10.1016/j.jenvman.2019.04.093] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2019] [Revised: 04/12/2019] [Accepted: 04/22/2019] [Indexed: 05/12/2023]
Abstract
Clostridium kluyveri was used for chain elongation of C2C4 fatty acids in stirred tank bioreactors. The influence of different electron acceptors (acetic acid, butyric acid and the mixture of both) on C6 fatty acid production was evaluated in presence of ethanol using similar molar alcohol/acid ratios around 3.5. Bottle batch assays without pH regulation and with only acetic acid as electron acceptor yielded a final C6 fatty acid concentration of 6.8 ± 0.6 g L-1. Then, pH-regulated bioreactors were operated at constant pH of 6.8. Under such conditions, the maximum growth rate was 0.039 h-1 obtained using acetic acid and butyric acid as electron acceptors, whereas the lowest growth rate was 0.010 h-1 with only butyric acid as electron acceptor. The maximum growth rate with acetic acid only, was similar, though slightly lower, as with the mixture of C2C4 fatty acids. Besides, the maximum productions of hexanoic acid were 11.8 g L-1, 13.1 g L-1 and 21.2 g L-1 using, respectively, acetic acid, butyric acid and the mixture of both acids as electron acceptors. Thus, the use of a mixture of acetic acid and butyric acid in presence of ethanol for chain elongation, at constant pH, proved to be efficient for hexanoic acid production.
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Affiliation(s)
- P San-Valero
- Chemical Engineering Laboratory, Faculty of Sciences and Center for Advanced Scientific Research (CICA), University of La Coruña (UDC), Rúa da Fraga 10, E-15008, La Coruña, Spain
| | - Á Fernández-Naveira
- Chemical Engineering Laboratory, Faculty of Sciences and Center for Advanced Scientific Research (CICA), University of La Coruña (UDC), Rúa da Fraga 10, E-15008, La Coruña, Spain
| | - M C Veiga
- Chemical Engineering Laboratory, Faculty of Sciences and Center for Advanced Scientific Research (CICA), University of La Coruña (UDC), Rúa da Fraga 10, E-15008, La Coruña, Spain
| | - C Kennes
- Chemical Engineering Laboratory, Faculty of Sciences and Center for Advanced Scientific Research (CICA), University of La Coruña (UDC), Rúa da Fraga 10, E-15008, La Coruña, Spain.
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18
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Glaven SM. Bioelectrochemical systems and synthetic biology: more power, more products. Microb Biotechnol 2019; 12:819-823. [PMID: 31264368 PMCID: PMC6680619 DOI: 10.1111/1751-7915.13456] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Affiliation(s)
- Sarah M Glaven
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA
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19
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Amaro TMMM, Rosa D, Comi G, Iacumin L. Prospects for the Use of Whey for Polyhydroxyalkanoate (PHA) Production. Front Microbiol 2019; 10:992. [PMID: 31143164 PMCID: PMC6520646 DOI: 10.3389/fmicb.2019.00992] [Citation(s) in RCA: 58] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2018] [Accepted: 04/18/2019] [Indexed: 11/13/2022] Open
Abstract
Plastic production and accumulation have devastating environmental effects, and consequently, the world is in need of environmentally friendly plastic substitutes. In this context, polyhydroxyalkanoates (PHAs) appear to be true alternatives to common plastics because they are biodegradable and biocompatible and can be biologically produced. Despite having comparable characteristics to common plastics, extensive PHA use is still hampered by its high production cost. PHAs are bacterial produced, and one of the major costs associated with their production derives from the carbon source used for bacterial fermentation. Thus, several industrial waste streams have been studied as candidate carbon sources for bacterial PHA production, including whey, an environmental contaminant by-product from the dairy industry. The use of whey for PHA production could transform PHA production into a less costly and more environmentally friendly process. However, the efficient use of whey as a carbon source for PHA production is still hindered by numerous issues, including whey pre-treatments and PHA producing strain choice. In this review, current knowledge on using whey for PHA production were summarized and new ways to overcome the challenges associated with this production process were proposed.
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Affiliation(s)
| | | | | | - Lucilla Iacumin
- Dipartimento di Scienze Agroalimentari, Ambientali e Animali, Università degli Studi di Udine, Udine, Italy
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20
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Chwialkowska J, Duber A, Zagrodnik R, Walkiewicz F, Łężyk M, Oleskowicz-Popiel P. Caproic acid production from acid whey via open culture fermentation - Evaluation of the role of electron donors and downstream processing. BIORESOURCE TECHNOLOGY 2019; 279:74-83. [PMID: 30711755 DOI: 10.1016/j.biortech.2019.01.086] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2018] [Revised: 01/18/2019] [Accepted: 01/19/2019] [Indexed: 05/16/2023]
Abstract
The objective of this study was to investigate the potential of supplementing ethanol and lactic acid as electron donors in reverse β-oxidation for short chain carboxylic acids chain elongation during anaerobic fermentation of acid whey. Best results were achieved when lactic acid was added at concentration of 300 mM. It resulted in medium chain carboxylic acids (MCCAs) concentration of 5.0 g/L. In the trials with ethanol addition, the overall yield was 20% lower. Subsequently liquid-liquid extraction with ionic liquids (ILs) was investigated as a potential purification method of caproic acid. The most promising, with respect to recovery of caproic acid, was piperazinium IL [C1C1C10Ppz][NTF2], however, the selectivity was only 0.39. Less effective [C1C1C6Ppz][NTF2] recovered 85.9% of caproic acid while reaching a higher selectivity of 0.53. Technoeconomic model revealed that to meet the conservative value of $2.25 per kg of caproic acid, the downstream processing should not exceed $0.65 per kg.
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Affiliation(s)
- Joanna Chwialkowska
- Institute of Environmental Engineering, Faculty of Civil and Environmental Engineering, Poznan University of Technology, Berdychowo 4, 60-965 Poznan, Poland
| | - Anna Duber
- Institute of Environmental Engineering, Faculty of Civil and Environmental Engineering, Poznan University of Technology, Berdychowo 4, 60-965 Poznan, Poland
| | - Roman Zagrodnik
- Department of Kinetics and Catalysis, Faculty of Chemistry, Adam Mickiewicz University, Umultowska 89 b, 61-614 Poznan, Poland
| | - Filip Walkiewicz
- Faculty of Chemical Technology, Poznan University of Technology, Berdychowo 4, 60-965 Poznan, Poland
| | - Mateusz Łężyk
- Institute of Environmental Engineering, Faculty of Civil and Environmental Engineering, Poznan University of Technology, Berdychowo 4, 60-965 Poznan, Poland
| | - Piotr Oleskowicz-Popiel
- Institute of Environmental Engineering, Faculty of Civil and Environmental Engineering, Poznan University of Technology, Berdychowo 4, 60-965 Poznan, Poland.
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21
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Xanthobacter-dominated biofilm as a novel source for high-value rhamnose. Appl Microbiol Biotechnol 2019; 103:4525-4538. [DOI: 10.1007/s00253-019-09765-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2018] [Revised: 03/04/2019] [Accepted: 03/12/2019] [Indexed: 10/27/2022]
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22
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Sustainable PHA production in integrated lignocellulose biorefineries. N Biotechnol 2019; 49:161-168. [DOI: 10.1016/j.nbt.2018.11.004] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2018] [Revised: 11/05/2018] [Accepted: 11/18/2018] [Indexed: 11/18/2022]
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23
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De Groof V, Coma M, Arnot T, Leak DJ, Lanham AB. Medium Chain Carboxylic Acids from Complex Organic Feedstocks by Mixed Culture Fermentation. Molecules 2019; 24:E398. [PMID: 30678297 PMCID: PMC6384945 DOI: 10.3390/molecules24030398] [Citation(s) in RCA: 71] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Revised: 01/10/2019] [Accepted: 01/18/2019] [Indexed: 12/22/2022] Open
Abstract
Environmental pressures caused by population growth and consumerism require the development of resource recovery from waste, hence a circular economy approach. The production of chemicals and fuels from organic waste using mixed microbial cultures (MMC) has become promising. MMC use the synergy of bio-catalytic activities from different microorganisms to transform complex organic feedstock, such as by-products from food production and food waste. In the absence of oxygen, the feedstock can be converted into biogas through the established anaerobic digestion (AD) approach. The potential of MMC has shifted to production of intermediate AD compounds as precursors for renewable chemicals. A particular set of anaerobic pathways in MMC fermentation, known as chain elongation, can occur under specific conditions producing medium chain carboxylic acids (MCCAs) with higher value than biogas and broader applicability. This review introduces the chain elongation pathway and other bio-reactions occurring during MMC fermentation. We present an overview of the complex feedstocks used, and pinpoint the main operational parameters for MCCAs production such as temperature, pH, loading rates, inoculum, head space composition, and reactor design. The review evaluates the key findings of MCCA production using MMC, and concludes by identifying critical research targets to drive forward this promising technology as a valorisation method for complex organic waste.
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Affiliation(s)
- Vicky De Groof
- EPSRC Centre for Doctoral Training in Sustainable Chemical Technologies, University of Bath, Claverton Down, Bath BA2 7AY, UK.
- Department of Chemical Engineering, University of Bath, Claverton Down, Bath BA2 7AY, UK.
| | - Marta Coma
- Centre for Sustainable Chemical Technologies (CSCT), University of Bath, Claverton Down, Bath BA2 7AY, UK.
| | - Tom Arnot
- Department of Chemical Engineering, University of Bath, Claverton Down, Bath BA2 7AY, UK.
- Water Innovation & Research Centre (WIRC), University of Bath, Claverton Down, Bath BA2 7AY, UK.
| | - David J Leak
- Centre for Sustainable Chemical Technologies (CSCT), University of Bath, Claverton Down, Bath BA2 7AY, UK.
- Department of Biology & Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK.
| | - Ana B Lanham
- Department of Chemical Engineering, University of Bath, Claverton Down, Bath BA2 7AY, UK.
- Water Innovation & Research Centre (WIRC), University of Bath, Claverton Down, Bath BA2 7AY, UK.
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24
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Nguyen TH, Ishizuna F, Sato Y, Arai H, Ishii M. Physiological characterization of poly-β-hydroxybutyrate accumulation in the moderately thermophilic hydrogen-oxidizing bacterium Hydrogenophilus thermoluteolus TH-1. J Biosci Bioeng 2018; 127:686-689. [PMID: 30579830 DOI: 10.1016/j.jbiosc.2018.11.011] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Revised: 11/01/2018] [Accepted: 11/21/2018] [Indexed: 11/30/2022]
Abstract
Hydrogenophilus thermoluteolus strain TH-1 is a thermophilic hydrogen-oxidizing microorganism that has the highest growth rate among autotrophs. Genomic analysis revealed that this strain comprises the complete gene set for poly-β-hydroxybutyrate (PHB) synthesis, i.e., three copies of acetyl-CoA acetyltransferase and polyhydroxyalkanoate synthase and one copy of acetoacetyl-CoA reductase and 3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase. An investigation on PHB accumulation in strain TH-1 demonstrated that PHB accumulation was induced by nitrogen limitation under autotrophic as well as heterotrophic conditions. This strain accumulated up to 430.4 ± 14.3 mg L-1 PHB during a 3-h incubation under nitrogen-limited heterotrophic conditions. The highest PHB accumulation rates under autotrophic and heterotrophic conditions were 38.6% (w/w) of the dry cells after a 6-h induction and 53.8% after 3 h, respectively. Although PHB granules started to accumulate after 15 min of nitrogen limitation under heterotrophic conditions, a drastic decrease of PHB was observed after 9 h of induction.
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Affiliation(s)
- Tri Huu Nguyen
- Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan; Department of Biology, Faculty of Science, Nong Lam University, HCMC 760-000, Viet Nam
| | - Fumiko Ishizuna
- Technology Advancement Center, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan; Department of Human Life Science and Design, Faculty of Contemporary Human Life Science, Tokyo Kasei Gakuin University, 2600 Aihara-machi, Machida-shi, Tokyo 194-0292, Japan
| | - Yuya Sato
- Environmental Management Research Institute, National Institute of Advanced Industrial Science and Technology, Ibaraki 305-8569, Japan
| | - Hiroyuki Arai
- Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan; Collaborative Research Institute for Innovative Microbiology, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan
| | - Masaharu Ishii
- Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan; Collaborative Research Institute for Innovative Microbiology, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan.
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25
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Rombouts JL, Mos G, Weissbrodt DG, Kleerebezem R, Van Loosdrecht MCM. Diversity and metabolism of xylose and glucose fermenting microbial communities in sequencing batch or continuous culturing. FEMS Microbiol Ecol 2018; 95:5228722. [DOI: 10.1093/femsec/fiy233] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Accepted: 11/30/2018] [Indexed: 11/13/2022] Open
Affiliation(s)
- Julius L Rombouts
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, the Netherlands
| | - Galvin Mos
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, the Netherlands
| | - David G Weissbrodt
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, the Netherlands
| | - Robbert Kleerebezem
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, the Netherlands
| | - Mark C M Van Loosdrecht
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, the Netherlands
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26
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Kwon M, Ho A, Yoon S. Novel approaches and reasons to isolate methanotrophic bacteria with biotechnological potentials: recent achievements and perspectives. Appl Microbiol Biotechnol 2018; 103:1-8. [PMID: 30315351 DOI: 10.1007/s00253-018-9435-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2018] [Revised: 10/02/2018] [Accepted: 10/02/2018] [Indexed: 10/28/2022]
Abstract
The recent drop in the price of natural gas has rekindled the interests in methanotrophs, the organisms capable of utilizing methane as the sole electron donor and carbon source, as biocatalysts for various industrial applications. As heterologous expression of the methane monooxygenases in more amenable hosts has been proven to be nearly impossible, future success in methanotroph biotechnology largely depends on securing phylogenetically and phenotypically diverse methanotrophs with relatively high growth rates. For long, isolation of methanotrophs have relied on repeated single colony picking after initial batch enrichment with methane, which is a very rigorous and time-consuming process. In this review, three unconventional isolation methods devised for facilitation of the isolation process, diversification of targeted methanotrophs, and/or screening of rapid growers are summarized. The soil substrate membrane method allowed for isolation of previously elusive methanotrophs and application of high-throughput extinction plating technique facilitated the isolation procedure. Use of a chemostat with gradually increased dilution rates proved effective in screening for the fastest-growing methanotrophs from environmental samples. Development of new isolation technologies incorporating microfluidics and single-cell techniques may lead to discovery of previously unculturable methanotrophs with unexpected metabolic potentials and thus, certainly warrant future investigation.
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Affiliation(s)
- Miye Kwon
- Department of Civil and Environmental Engineering, Korea Advanced Institute of Science and Technology, Daejeon, 34141, South Korea
| | - Adrian Ho
- Institute for Microbiology, Leibniz Universität Hannover, 30419, Hannover, Germany
| | - Sukhwan Yoon
- Department of Civil and Environmental Engineering, Korea Advanced Institute of Science and Technology, Daejeon, 34141, South Korea.
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27
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Srikanth S, Singh D, Vanbroekhoven K, Pant D, Kumar M, Puri SK, Ramakumar SSV. Electro-biocatalytic conversion of carbon dioxide to alcohols using gas diffusion electrode. BIORESOURCE TECHNOLOGY 2018; 265:45-51. [PMID: 29879650 DOI: 10.1016/j.biortech.2018.02.058] [Citation(s) in RCA: 61] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Revised: 02/09/2018] [Accepted: 02/13/2018] [Indexed: 06/08/2023]
Abstract
Impact of gas diffusion electrodes (GDEs) was evaluated in enhancing the CO2 bio-availability for its transformation to C4-organics, especially to alcohols using selective mixed culture. Observed current density was more stable (9-11 A/m2) than submerged experiments reported and significantly varied with pH and respective CO2 solubility. Uncontrolled operating pH (starting with 8.0) showed its impact on shifting/triggering alternate metabolic pathways to increase the carbon length (butyric acid) as well as producing more reduced end products, i.e. alcohols. During the experiments, CO2 was transformed initially to a mixture of volatile fatty acids dominated with formic and acetic acids, and upon their accumulation, ethanol and butanol production was triggered. Overall, 21 g/l of alcohols and 13 g/l of organic acids were accumulated in 90 days with a coulombic efficiency (CE) of 49%. Ethanol and butanol occupied respectively about 45% and 16% of total products, indicating larger potential of this technology.
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Affiliation(s)
- Sandipam Srikanth
- Industrial Biotechnology Department, Research and Development Center, Indian Oil Corporation Limited, Sector-13, Faridabad, Haryana 121007, India
| | - Dheer Singh
- Industrial Biotechnology Department, Research and Development Center, Indian Oil Corporation Limited, Sector-13, Faridabad, Haryana 121007, India
| | - K Vanbroekhoven
- Separation and Conversion Technology, Flemish Institute for Technological Research (VITO), Boeretang 200, Mol 2400, Belgium
| | - Deepak Pant
- Separation and Conversion Technology, Flemish Institute for Technological Research (VITO), Boeretang 200, Mol 2400, Belgium
| | - Manoj Kumar
- Industrial Biotechnology Department, Research and Development Center, Indian Oil Corporation Limited, Sector-13, Faridabad, Haryana 121007, India.
| | - S K Puri
- Industrial Biotechnology Department, Research and Development Center, Indian Oil Corporation Limited, Sector-13, Faridabad, Haryana 121007, India
| | - S S V Ramakumar
- Industrial Biotechnology Department, Research and Development Center, Indian Oil Corporation Limited, Sector-13, Faridabad, Haryana 121007, India
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28
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Promising catalytic synthesis pathways towards higher alcohols as suitable transport fuels based on H2 and CO2. J CO2 UTIL 2018. [DOI: 10.1016/j.jcou.2018.07.013] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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29
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Srikanth S, Kumar M, Singh D, Singh MP, Puri SK, Ramakumar SSV. Long-term operation of electro-biocatalytic reactor for carbon dioxide transformation into organic molecules. BIORESOURCE TECHNOLOGY 2018; 265:66-74. [PMID: 29883848 DOI: 10.1016/j.biortech.2017.12.075] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2017] [Revised: 12/22/2017] [Accepted: 12/23/2017] [Indexed: 06/08/2023]
Abstract
Electro-biocatalytic reactor was operated using selectively enriched mixed culture biofilm for about 320 days with CO2/bicarbonate as C-source. Biocathode consumed higher current (-16.2 ± 0.3 A/m2) for bicarbonate transformation yielding high product synthesis (0.74 g/l/day) compared to CO2 (-9.5 ± 2.8 A/m2; 0.41 g/l/day). Product slate includes butanol and butyric acid when CO2 gets transformed but propionic acid replaced both when bicarbonate gets transformed. Based on electroanalysis, the electron transfer might be H2 mediated along with direct transfer under bicarbonate turnover conditions, while it was restricted to direct under CO2. Efficiency and stability of biofilm was tested by removing the planktonic cells, and also confirmed in terms of Coulombic (85-97%) and carbon conversion efficiencies (42-48%) along with production rate (1.2-1.7 kg/m2 electrode) using bicarbonate as substrate. Selective enrichment of microbes and their growth as biofilm along with soluble CO2 have helped in efficient transformation of CO2 up to C4 organic molecules.
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Affiliation(s)
- Sandipam Srikanth
- Industrial Biotechnology Department, Research and Development Center, Indian Oil Corporation Limited, Sector-13, Faridabad, Haryana 121007, India
| | - Manoj Kumar
- Industrial Biotechnology Department, Research and Development Center, Indian Oil Corporation Limited, Sector-13, Faridabad, Haryana 121007, India.
| | - Dheer Singh
- Industrial Biotechnology Department, Research and Development Center, Indian Oil Corporation Limited, Sector-13, Faridabad, Haryana 121007, India
| | - M P Singh
- Industrial Biotechnology Department, Research and Development Center, Indian Oil Corporation Limited, Sector-13, Faridabad, Haryana 121007, India
| | - S K Puri
- Industrial Biotechnology Department, Research and Development Center, Indian Oil Corporation Limited, Sector-13, Faridabad, Haryana 121007, India
| | - S S V Ramakumar
- Industrial Biotechnology Department, Research and Development Center, Indian Oil Corporation Limited, Sector-13, Faridabad, Haryana 121007, India
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Zhang X, Qu Y, Ma Q, Li S, Dai C, Lian S, Zhou J. Performance and Microbial Community Analysis of Bioaugmented Activated Sludge System for Indigo Production from Indole. Appl Biochem Biotechnol 2018; 187:1437-1447. [DOI: 10.1007/s12010-018-2879-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2018] [Accepted: 09/09/2018] [Indexed: 11/29/2022]
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Zebec Z, Scrutton NS. Genome Editing for the Production of Natural Products inEscherichia coli. ACTA ACUST UNITED AC 2018. [DOI: 10.1002/adbi.201800056] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Ziga Zebec
- Manchester Institute of Biotechnology and School of Chemistry; The University of Manchester; Manchester M1 7DN UK
| | - Nigel S. Scrutton
- Manchester Institute of Biotechnology and School of Chemistry; The University of Manchester; Manchester M1 7DN UK
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Sasaki K, Sasaki D, Tsuge Y, Morita M, Kondo A. Changes in the microbial consortium during dark hydrogen fermentation in a bioelectrochemical system increases methane production during a two-stage process. BIOTECHNOLOGY FOR BIOFUELS 2018; 11:173. [PMID: 29977334 PMCID: PMC6013992 DOI: 10.1186/s13068-018-1175-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2018] [Accepted: 06/15/2018] [Indexed: 06/08/2023]
Abstract
BACKGROUND Bioelectrochemical systems (BESs) are an innovative technology developed to influence conventional anaerobic digestion. We examined the feasibility of applying a BES to dark hydrogen fermentation and its effects on a two-stage fermentation process comprising hydrogen and methane production. The BES used low-cost, low-reactivity carbon sheets as the cathode and anode, and the cathodic potential was controlled at - 1.0 V (vs. Ag/AgCl) with a potentiostat. The operation used 10 g/L glucose as the major carbon source. RESULTS The electric current density was low throughout (0.30-0.88 A/m2 per electrode corresponding to 0.5-1.5 mM/day of hydrogen production) and water electrolysis was prevented. At a hydraulic retention time of 2 days with a substrate pH of 6.5, the BES decreased gas production (hydrogen and carbon dioxide contents: 52.1 and 47.1%, respectively), compared to the non-bioelectrochemical system (NBES), although they had similar gas compositions. In addition, a methane fermenter (MF) was applied after the BES, which increased gas production (methane and carbon dioxide contents: 85.1 and 14.9%, respectively) compared to the case when the MF was applied after the NBES. Meta 16S rRNA sequencing revealed that the BES accelerated the growth of Ruminococcus sp. and Veillonellaceae sp. and decreased Clostridium sp. and Thermoanaerobacterium sp., resulting in increased propionate and ethanol generation and decreased butyrate generation; however, unknowingly, acetate generation was increased in the BES. CONCLUSIONS The altered redox potential in the BES likely transformed the structure of the microbial consortium and metabolic pattern to increase methane production and decrease carbon dioxide production in the two-stage process. This study showed the utility of the BES to act on the microbial consortium, resulting in improved gas production from carbohydrate compounds.
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Affiliation(s)
- Kengo Sasaki
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo 657-8501 Japan
| | - Daisuke Sasaki
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo 657-8501 Japan
| | - Yota Tsuge
- Institute for Frontier Science Initiative, Kanazawa University, Kakuma-machi, Kanazawa, Ishikawa 920-1192 Japan
| | - Masahiko Morita
- Environmental Chemistry Sector, Environmental Science Research Laboratory, Central Research Institute of Electric Power Industry, 1646 Abiko, Abiko-shi, Chiba-ken 270-1194 Japan
| | - Akihiko Kondo
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo 657-8501 Japan
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045 Japan
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Chen Q, Pu W, Hou H, Hu J, Liu B, Li J, Cheng K, Huang L, Yuan X, Yang C, Yang J. Activated microporous-mesoporous carbon derived from chestnut shell as a sustainable anode material for high performance microbial fuel cells. BIORESOURCE TECHNOLOGY 2018; 249:567-573. [PMID: 29091839 DOI: 10.1016/j.biortech.2017.09.086] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Revised: 09/11/2017] [Accepted: 09/13/2017] [Indexed: 06/07/2023]
Abstract
Microbial fuel cells (MFCs) are promising biotechnologies tool to harvest electricity by decomposing organic matter in waste water, and the anode material is a critical factor in determining the performance of MFCs. In this study, chestnut shell is proposed as a novel anode material with mesoporous and microporous structure prepared via a simple carbonization procedure followed by an activation process. The chemical activation process successfully modified the macroporous structure, created more mesoporous and microporous structure and decreased the O-content and pyridinic/pyrrolic N groups on the biomass anode, which were beneficial for improving charge transfer efficiency between the anode surface and microbial biofilm. The MFC with activated biomass anode achieved a maximum power density (23.6 W m-3) 2.3 times higher than carbon cloth anode (10.4 W m-3). This study introduces a promising and feasible strategy for the fabrication of high performance anodes for MFCs derived from cost-effective, sustainable natural materials.
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Affiliation(s)
- Qin Chen
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan 430074, PR China
| | - Wenhong Pu
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan 430074, PR China
| | - Huijie Hou
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan 430074, PR China
| | - Jingping Hu
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan 430074, PR China
| | - Bingchuan Liu
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan 430074, PR China
| | - Jianfeng Li
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan 430074, PR China
| | - Kai Cheng
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan 430074, PR China
| | - Long Huang
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan 430074, PR China
| | - Xiqing Yuan
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan 430074, PR China
| | - Changzhu Yang
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan 430074, PR China
| | - Jiakuan Yang
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, 1037 Luoyu Road, Wuhan 430074, PR China.
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Carmona-Martínez AA, Lacroix R, Trably E, Da Silva S, Bernet N. On the actual anode area that contributes to the current density produced by electroactive biofilms. Electrochim Acta 2018. [DOI: 10.1016/j.electacta.2017.10.200] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Angenent LT, Usack JG, Xu J, Hafenbradl D, Posmanik R, Tester JW. Integrating electrochemical, biological, physical, and thermochemical process units to expand the applicability of anaerobic digestion. BIORESOURCE TECHNOLOGY 2018; 247:1085-1094. [PMID: 28964600 DOI: 10.1016/j.biortech.2017.09.104] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2017] [Revised: 09/14/2017] [Accepted: 09/15/2017] [Indexed: 06/07/2023]
Abstract
Anaerobic digestion (AD) is a mature biotechnology-production platform with millions of installations at homes, farms, and industrial/municipal settings. Large-scale industrial, agricultural, and municipal waste-treatment systems may observe novel integration with electrochemical, biological, physical, and thermochemical process units to make AD more attractive. Without governmental subsidies, AD has often only a relatively low economic return or none at all. Diversification of products besides methane in biogas may help to change this. Here, several sections discuss different process units to: 1) upgrade biogas into biomethane; 2) convert carbon dioxide in biogas to more biomethane; 3) generate cooling power from process heat; 4) produce bio-crude oil (bio-oil) from organic matter; and 5) produce a liquid biochemical product from organic matter. This is not meant to be an exhaustive list, but rather a selection of particularly promising process units from a technological view, which are already integrated with AD or close to full-scale integration.
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Affiliation(s)
- Largus T Angenent
- Centrum for Applied GeoSciences, University of Tübingen, Hölderlinstr. 12, 72074 Tübingen, Germany.
| | - Joseph G Usack
- Centrum for Applied GeoSciences, University of Tübingen, Hölderlinstr. 12, 72074 Tübingen, Germany
| | - Jiajie Xu
- Department of Biological and Environmental Engineering, Cornell University, Riley-Robb Hall, Ithaca, NY 14853, USA
| | | | - Roy Posmanik
- School of Chemical and Biomolecular Engineering, Cornell University, 120 Olin Hall, Ithaca, NY 14853, USA; Cornell Energy Institute, Cornell University, 2160 Snee Hall, Ithaca, NY 14853, USA
| | - Jefferson W Tester
- School of Chemical and Biomolecular Engineering, Cornell University, 120 Olin Hall, Ithaca, NY 14853, USA; Cornell Energy Institute, Cornell University, 2160 Snee Hall, Ithaca, NY 14853, USA; Atkinson Center for a Sustainable Future, Cornell University, 200 Rice Hall, Ithaca, NY 14853, USA
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Koch C, Korth B, Harnisch F. Microbial ecology-based engineering of Microbial Electrochemical Technologies. Microb Biotechnol 2018; 11:22-38. [PMID: 28805354 PMCID: PMC5743830 DOI: 10.1111/1751-7915.12802] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2017] [Revised: 07/11/2017] [Accepted: 07/12/2017] [Indexed: 11/27/2022] Open
Abstract
Microbial ecology is devoted to the understanding of dynamics, activity and interaction of microorganisms in natural and technical ecosystems. Bioelectrochemical systems represent important technical ecosystems, where microbial ecology is of highest importance for their function. However, whereas aspects of, for example, materials and reactor engineering are commonly perceived as highly relevant, the study and engineering of microbial ecology are significantly underrepresented in bioelectrochemical systems. This shortfall may be assigned to a deficit on knowledge and power of these methods as well as the prerequisites for their thorough application. This article discusses not only the importance of microbial ecology for microbial electrochemical technologies but also shows which information can be derived for a knowledge-driven engineering. Instead of providing a comprehensive list of techniques from which it is hard to judge the applicability and value of information for a respective one, this review illustrates the suitability of selected techniques on a case study. Thereby, best practice for different research questions is provided and a set of key questions for experimental design, data acquisition and analysis is suggested.
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Affiliation(s)
- Christin Koch
- Department of Environmental MicrobiologyHelmholtz Centre for Environmental Research GmbH ‐ UFZPermoserstraße 1504318LeipzigGermany
| | - Benjamin Korth
- Department of Environmental MicrobiologyHelmholtz Centre for Environmental Research GmbH ‐ UFZPermoserstraße 1504318LeipzigGermany
| | - Falk Harnisch
- Department of Environmental MicrobiologyHelmholtz Centre for Environmental Research GmbH ‐ UFZPermoserstraße 1504318LeipzigGermany
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Balancing cellular redox metabolism in microbial electrosynthesis and electro fermentation - A chance for metabolic engineering. Metab Eng 2017; 45:109-120. [PMID: 29229581 DOI: 10.1016/j.ymben.2017.12.003] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2017] [Revised: 09/15/2017] [Accepted: 12/06/2017] [Indexed: 01/05/2023]
Abstract
More and more microbes are discovered that are capable of extracellular electron transfer, a process in which they use external electrodes as electron donors or acceptors for metabolic reactions. This feature can be used to overcome cellular redox limitations and thus optimizing microbial production. The technologies, termed microbial electrosynthesis and electro-fermentation, have the potential to open novel bio-electro production platforms from sustainable energy and carbon sources. However, the performance of reported systems is currently limited by low electron transport rates between microbes and electrodes and our limited ability for targeted engineering of these systems due to remaining knowledge gaps about the underlying fundamental processes. Metabolic engineering offers many opportunities to optimize these processes, for instance by genetic engineering of pathways for electron transfer on the one hand and target product synthesis on the other hand. With this review, we summarize the status quo of knowledge and engineering attempts around chemical production in bio-electrochemical systems from a microbe perspective. Challenges associated with the introduction or enhancement of extracellular electron transfer capabilities into production hosts versus the engineering of target compound synthesis pathways in natural exoelectrogens are discussed. Recent advances of the research community in both directions are examined critically. Further, systems biology approaches, for instance using metabolic modelling, are examined for their potential to provide insight into fundamental processes and to identify targets for metabolic engineering.
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Predicting and experimental evaluating bio-electrochemical synthesis — A case study with Clostridium kluyveri. Bioelectrochemistry 2017; 118:114-122. [DOI: 10.1016/j.bioelechem.2017.07.009] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2017] [Revised: 07/24/2017] [Accepted: 07/24/2017] [Indexed: 11/20/2022]
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Amorim NCS, Amorim ELC, Kato MT, Florencio L, Gavazza S. The effect of methanogenesis inhibition, inoculum and substrate concentration on hydrogen and carboxylic acids production from cassava wastewater. Biodegradation 2017; 29:41-58. [PMID: 29128887 DOI: 10.1007/s10532-017-9812-y] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2017] [Accepted: 11/06/2017] [Indexed: 11/30/2022]
Abstract
Manipueira is a carbohydrate-rich agro-industrial waste from cassava processing. It is considered well suitable for biotechnological processes, such as hydrogen and carboxylic acids production, due to the high content of easily degradable organic matter. However, the proper methanogenesis inhibition method, inoculum type, and organic loads are factors still limiting the processes. The objective in this work was to evaluate the effects of such factors on byproducts production in anaerobic reactors. Batch experiments were conducted with 2.3-L flasks during two operational phases. In the first phase (P1), inhibition of methanogens in the sludge was evaluated using acetylene (1% v/v of headspace) and heat treatment (120 °C, 1 atm for 30 min). In the second phase (P2), three inoculum types obtained from common anaerobic sludges (bovine rumen and sludges from municipal and textile industrial wastewater treatment plants) were individually assayed. P2 aimed to identify the best inoculum, based on hydrogen production ability, which was tested for three initial concentrations of manipueira in terms of chemical oxygen demand (COD) (10, 20 and 40 g O2/L). Results of P1 indicated that either acetylene or heat treatment efficiently inhibited methanogenesis, with no methane production. However, the maximum H2 production potential by applying heat treatment (~ 563 mL) was more than twice compared with that by acetylene treatment (~ 257 mL); and butyrate was the main carboxylic acid by-product (~ 3 g/L). In P2 experiments after sludge heat treatment, the highest hydrogen yield (1.66 ± 0.07 mol H2/mol glucose) and caproic acid production (~ 2 g/L) were observed at 20 g O2/L of manipueira COD, when bovine rumen was the inoculum. The primary metabolic degradation products in all P2 experiments were ethanol, acetic, butyric, propionic and caproic acids. The finding of caproic acid detection indicated that the applied conditions in manipueira anaerobic degradation favored carbon chain elongation over methanogenesis.
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Affiliation(s)
- Norma C S Amorim
- Laboratório de Saneamento Ambiental, Departamento de Engenharia Civil e Ambiental, Universidade Federal de Pernambuco, Av. Acadêmico Hélio Ramos, s/n. Cidade Universitária, Recife, PE, CEP: 50740-530, Brazil.,Instituto Federal de Alagoas, Campus de Satuba, Rua 17 de Agosto, s/n. Centro, Satuba, AL, CEP: 57120-000, Brazil
| | - Eduardo L C Amorim
- Universidade Federal de Alagoas, Campus A.C. Simões. Av. Lourival Melo Mota, s/n. Tabuleiro dos Martins, Maceió, AL, CEP: 57072-900, Brazil
| | - Mario T Kato
- Laboratório de Saneamento Ambiental, Departamento de Engenharia Civil e Ambiental, Universidade Federal de Pernambuco, Av. Acadêmico Hélio Ramos, s/n. Cidade Universitária, Recife, PE, CEP: 50740-530, Brazil
| | - Lourdinha Florencio
- Laboratório de Saneamento Ambiental, Departamento de Engenharia Civil e Ambiental, Universidade Federal de Pernambuco, Av. Acadêmico Hélio Ramos, s/n. Cidade Universitária, Recife, PE, CEP: 50740-530, Brazil
| | - Savia Gavazza
- Laboratório de Saneamento Ambiental, Departamento de Engenharia Civil e Ambiental, Universidade Federal de Pernambuco, Av. Acadêmico Hélio Ramos, s/n. Cidade Universitária, Recife, PE, CEP: 50740-530, Brazil.
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Esquivel-Elizondo S, Delgado AG, Rittmann BE, Krajmalnik-Brown R. The effects of CO 2 and H 2 on CO metabolism by pure and mixed microbial cultures. BIOTECHNOLOGY FOR BIOFUELS 2017; 10:220. [PMID: 28936234 PMCID: PMC5603099 DOI: 10.1186/s13068-017-0910-1] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2017] [Accepted: 09/07/2017] [Indexed: 05/27/2023]
Abstract
BACKGROUND Syngas fermentation, the bioconversion of CO, CO2, and H2 to biofuels and chemicals, has undergone considerable optimization for industrial applications. Even more, full-scale plants for ethanol production from syngas fermentation by pure cultures are being built worldwide. The composition of syngas depends on the feedstock gasified and the gasification conditions. However, it remains unclear how different syngas mixtures affect the metabolism of carboxidotrophs, including the ethanol/acetate ratios. In addition, the potential application of mixed cultures in syngas fermentation and their advantages over pure cultures have not been deeply explored. In this work, the effects of CO2 and H2 on the CO metabolism by pure and mixed cultures were studied and compared. For this, a CO-enriched mixed culture and two isolated carboxidotrophs were grown with different combinations of syngas components (CO, CO:H2, CO:CO2, or CO:CO2:H2). RESULTS The CO metabolism of the mixed culture was somehow affected by the addition of CO2 and/or H2, but the pure cultures were more sensitive to changes in gas composition than the mixed culture. CO2 inhibited CO oxidation by the Pleomorphomonas-like isolate and decreased the ethanol/acetate ratio by the Acetobacterium-like isolate. H2 did not inhibit ethanol or H2 production by the Acetobacterium and Pleomorphomonas isolates, respectively, but decreased their CO consumption rates. As part of the mixed culture, these isolates, together with other microorganisms, consumed H2 and CO2 (along with CO) for all conditions tested and at similar CO consumption rates (2.6 ± 0.6 mmol CO L-1 day-1), while maintaining overall function (acetate production). Providing a continuous supply of CO by membrane diffusion caused the mixed culture to switch from acetate to ethanol production, presumably due to the increased supply of electron donor. In parallel with this change in metabolic function, the structure of the microbial community became dominated by Geosporobacter phylotypes, instead of Acetobacterium and Pleomorphomonas phylotypes. CONCLUSIONS These results provide evidence for the potential of mixed-culture syngas fermentation, since the CO-enriched mixed culture showed high functional redundancy, was resilient to changes in syngas composition, and was capable of producing acetate or ethanol as main products of CO metabolism.
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Affiliation(s)
- Sofia Esquivel-Elizondo
- Biodesign Swette Center for Environmental Biotechnology, Arizona State University, P.O. Box 875701, Tempe, AZ 85287-5701 USA
- School of Sustainable Engineering and the Built Environment, Arizona State University, Tempe, AZ USA
| | - Anca G. Delgado
- Biodesign Swette Center for Environmental Biotechnology, Arizona State University, P.O. Box 875701, Tempe, AZ 85287-5701 USA
- School of Sustainable Engineering and the Built Environment, Arizona State University, Tempe, AZ USA
| | - Bruce E. Rittmann
- Biodesign Swette Center for Environmental Biotechnology, Arizona State University, P.O. Box 875701, Tempe, AZ 85287-5701 USA
- School of Sustainable Engineering and the Built Environment, Arizona State University, Tempe, AZ USA
| | - Rosa Krajmalnik-Brown
- Biodesign Swette Center for Environmental Biotechnology, Arizona State University, P.O. Box 875701, Tempe, AZ 85287-5701 USA
- School of Sustainable Engineering and the Built Environment, Arizona State University, Tempe, AZ USA
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Liu Y, He P, Shao L, Zhang H, Lü F. Significant enhancement by biochar of caproate production via chain elongation. WATER RESEARCH 2017; 119:150-159. [PMID: 28456078 DOI: 10.1016/j.watres.2017.04.050] [Citation(s) in RCA: 81] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2016] [Revised: 04/18/2017] [Accepted: 04/19/2017] [Indexed: 05/24/2023]
Abstract
In this study, biochar was introduced into a chain elongation system to enhance the bioproduction of caproate and caprylate. The concentration of caproate increased to 21.1 g/L upon the addition of biochar, which is the highest level of caproate reported for such a system to date when ethanol was used as electron donor. The addition of biochar created a tougher system with more stable microorganism community structure for chain elongation, in which no obvious inhibition by products or substrates was observed, moreover, the lag phase was reduced 2.3-fold compared to the system without biochar. These reinforcement effect of biochar are attributed to the enhanced conductivity due to the significant enrichment of functional microorganisms via the microbial network surrounding smaller biochar particles, and via the adsorption on the rough surfaces or pores of larger particles, which facilitated electron transfer. Higher amounts of extracellular polymer substances and higher conductivity induced by biochar could contribute to the reinforcement effect in chain elongation.
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Affiliation(s)
- Yuhao Liu
- State Key Laboratory of Pollution Control and Resources Reuse, Tongji University, Shanghai 200092, China; Institute of Waste Treatment and Reclamation, Tongji University, Shanghai 200092, China
| | - Pinjing He
- Institute of Waste Treatment and Reclamation, Tongji University, Shanghai 200092, China; Centre for the Technology Research and Training on Household Waste in Small Towns & Rural Area, Ministry of Housing and Urban-Rural Development of P.R. China (MOHURD), China
| | - Liming Shao
- Centre for the Technology Research and Training on Household Waste in Small Towns & Rural Area, Ministry of Housing and Urban-Rural Development of P.R. China (MOHURD), China
| | - Hua Zhang
- State Key Laboratory of Pollution Control and Resources Reuse, Tongji University, Shanghai 200092, China; Institute of Waste Treatment and Reclamation, Tongji University, Shanghai 200092, China
| | - Fan Lü
- State Key Laboratory of Pollution Control and Resources Reuse, Tongji University, Shanghai 200092, China; Institute of Waste Treatment and Reclamation, Tongji University, Shanghai 200092, China.
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Modestra JA, Mohan SV. Microbial electrosynthesis of carboxylic acids through CO 2 reduction with selectively enriched biocatalyst: Microbial dynamics. J CO2 UTIL 2017. [DOI: 10.1016/j.jcou.2017.05.011] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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Saratale RG, Saratale GD, Pugazhendhi A, Zhen G, Kumar G, Kadier A, Sivagurunathan P. Microbiome involved in microbial electrochemical systems (MESs): A review. CHEMOSPHERE 2017; 177:176-188. [PMID: 28288426 DOI: 10.1016/j.chemosphere.2017.02.143] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2016] [Revised: 02/22/2017] [Accepted: 02/27/2017] [Indexed: 06/06/2023]
Abstract
Microbial electrochemical systems (MESs) are an attracting technology for the disposal of wastewater treatment and simultaneous energy production. In MESs, at the anode microorganisms through the catalytic activity generates electrons that can be converted into electricity or other valuable chemical compounds. Microorganisms those having ability to donate and accept electrons to and from anode and cathode electrodes, respectively are recognized as 'exoelectrogens'. In the MESs, it renders an important function for its performance. In the present mini-review, we have discussed the role of microbiome including pure culture, enriched culture and mixed culture in different BESs application. The effects of operational and biological factors on microbiome development have been discussed. Further discussion about the molecular techniques for the evaluation of microbial community analysis is addressed. In addition different electrochemical techniques for extracellular electron transfer (EET) mechanism of electroactive biofilms have been discussed. This review highlights the importance of microbiome in the development of MESs, effective operational factors for exo-electrogens activities as well their key challenges and future technological aspects are also briefly discussed.
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Affiliation(s)
- Rijuta Ganesh Saratale
- Research Institute of Biotechnology and Medical Converged Science, Dongguk University- Seoul, Ilsandong-gu, Goyang-si, Gyeonggi-do, 10326, Republic of Korea
| | - Ganesh Dattatraya Saratale
- Department of Food Science and Biotechnology, Dongguk University-Seoul, Ilsandong-gu, Goyang-si, Gyeonggi-do, 10326, Republic of Korea
| | - Arivalagan Pugazhendhi
- Department of Environmental Engineering, Daegu University, Jillyang, Gyeongsan, Gyeongbuk, Republic of Korea
| | - Guangyin Zhen
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Dongchuan Rd. 500, Shanghai 200241, China
| | - Gopalakrishnan Kumar
- Department of Environmental Engineering, Daegu University, Jillyang, Gyeongsan, Gyeongbuk, Republic of Korea
| | - Abudukeremu Kadier
- Department of Chemical and Process Engineering, Faculty of Engineering and Built Environment, National University of Malaysia (UKM), 43600 UKM Bangi, Selangor, Malaysia
| | - Periyasamy Sivagurunathan
- Green Energy Technology Research Group, Ton Duc Thang University, Ho Chi Minh City, Viet Nam; Faculty of Environment and Labour Safety, Ton Duc Thang University, Ho Chi Minh City, Viet Nam.
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Esquivel-Elizondo S, Delgado AG, Krajmalnik-Brown R. Evolution of microbial communities growing with carbon monoxide, hydrogen, and carbon dioxide. FEMS Microbiol Ecol 2017; 93:3857738. [DOI: 10.1093/femsec/fix076] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2016] [Accepted: 05/26/2017] [Indexed: 01/06/2023] Open
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Blasco-Gómez R, Batlle-Vilanova P, Villano M, Balaguer MD, Colprim J, Puig S. On the Edge of Research and Technological Application: A Critical Review of Electromethanogenesis. Int J Mol Sci 2017; 18:E874. [PMID: 28425974 PMCID: PMC5412455 DOI: 10.3390/ijms18040874] [Citation(s) in RCA: 81] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2017] [Revised: 03/22/2017] [Accepted: 04/11/2017] [Indexed: 11/24/2022] Open
Abstract
The conversion of electrical current into methane (electromethanogenesis) by microbes represents one of the most promising applications of bioelectrochemical systems (BES). Electromethanogenesis provides a novel approach to waste treatment, carbon dioxide fixation and renewable energy storage into a chemically stable compound, such as methane. This has become an important area of research since it was first described, attracting different research groups worldwide. Basics of the process such as microorganisms involved and main reactions are now much better understood, and recent advances in BES configuration and electrode materials in lab-scale enhance the interest in this technology. However, there are still some gaps that need to be filled to move towards its application. Side reactions or scaling-up issues are clearly among the main challenges that need to be overcome to its further development. This review summarizes the recent advances made in the field of electromethanogenesis to address the main future challenges and opportunities of this novel process. In addition, the present fundamental knowledge is critically reviewed and some insights are provided to identify potential niche applications and help researchers to overcome current technological boundaries.
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Affiliation(s)
- Ramiro Blasco-Gómez
- Laboratory of Chemical and Environmental Engineering (LEQUIA), Institute of the Environment, University of Girona, Campus Montilivi, Carrer Maria Aurèlia Capmany, 69, E-17003 Girona, Spain.
| | - Pau Batlle-Vilanova
- Laboratory of Chemical and Environmental Engineering (LEQUIA), Institute of the Environment, University of Girona, Campus Montilivi, Carrer Maria Aurèlia Capmany, 69, E-17003 Girona, Spain.
- Department of Innovation and Technology, FCC Aqualia, Balmes Street, 36, 6th Floor, 08007 Barcelona, Spain.
| | - Marianna Villano
- Department of Chemistry, Sapienza University of Rome, P.le Aldo Moro 5, 00185 Rome, Italy.
| | - Maria Dolors Balaguer
- Laboratory of Chemical and Environmental Engineering (LEQUIA), Institute of the Environment, University of Girona, Campus Montilivi, Carrer Maria Aurèlia Capmany, 69, E-17003 Girona, Spain.
| | - Jesús Colprim
- Laboratory of Chemical and Environmental Engineering (LEQUIA), Institute of the Environment, University of Girona, Campus Montilivi, Carrer Maria Aurèlia Capmany, 69, E-17003 Girona, Spain.
| | - Sebastià Puig
- Laboratory of Chemical and Environmental Engineering (LEQUIA), Institute of the Environment, University of Girona, Campus Montilivi, Carrer Maria Aurèlia Capmany, 69, E-17003 Girona, Spain.
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Puig S, Ganigué R, Batlle-Vilanova P, Balaguer MD, Bañeras L, Colprim J. Tracking bio-hydrogen-mediated production of commodity chemicals from carbon dioxide and renewable electricity. BIORESOURCE TECHNOLOGY 2017; 228:201-209. [PMID: 28063363 DOI: 10.1016/j.biortech.2016.12.035] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2016] [Revised: 12/08/2016] [Accepted: 12/09/2016] [Indexed: 05/28/2023]
Abstract
This study reveals that reduction of carbon dioxide (CO2) to commodity chemicals can be functionally compartmentalized in bioelectrochemical systems. In the present example, a syntrophic consortium composed by H2-producers (Rhodobacter sp.) in the biofilm is combined with carboxidotrophic Clostridium species, mainly found in the bulk liquid. The performance of these H2-mediated electricity-driven systems could be tracked by the activity of a biological H2 sensory protein identified at cathode potentials between -0.2V and -0.3V vs SHE. This seems to point out that such signal is not strain specific, but could be detected in any organism containing hydrogenases. Thus, the findings of this work open the door to the development of a biosensor application or soft sensors for monitoring such systems.
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Affiliation(s)
- Sebastià Puig
- LEQUIA, Institute of the Environment, University of Girona, Campus de Montilivi, Carrer Maria Aurèlia Capmany, 69, E-17003 Girona, Catalonia, Spain.
| | - Ramon Ganigué
- LEQUIA, Institute of the Environment, University of Girona, Campus de Montilivi, Carrer Maria Aurèlia Capmany, 69, E-17003 Girona, Catalonia, Spain; Centre of Microbial Ecology and Technology, Ghent University, Coupure Links 653, B-9000 Ghent, Belgium
| | - Pau Batlle-Vilanova
- LEQUIA, Institute of the Environment, University of Girona, Campus de Montilivi, Carrer Maria Aurèlia Capmany, 69, E-17003 Girona, Catalonia, Spain; Department of Innovation and Technology, FCC Aqualia, Balmes Street, 36, 6th Floor, 08007 Barcelona, Spain
| | - M Dolors Balaguer
- LEQUIA, Institute of the Environment, University of Girona, Campus de Montilivi, Carrer Maria Aurèlia Capmany, 69, E-17003 Girona, Catalonia, Spain
| | - Lluís Bañeras
- Molecular Microbial Ecology Group, Institute of Aquatic Ecology, University of Girona, E-17071 Girona, Spain
| | - Jesús Colprim
- LEQUIA, Institute of the Environment, University of Girona, Campus de Montilivi, Carrer Maria Aurèlia Capmany, 69, E-17003 Girona, Catalonia, Spain
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Badalato N, Guillot A, Sabarly V, Dubois M, Pourette N, Pontoire B, Robert P, Bridier A, Monnet V, Sousa DZ, Durand S, Mazéas L, Buléon A, Bouchez T, Mortha G, Bize A. Whole Proteome Analyses on Ruminiclostridium cellulolyticum Show a Modulation of the Cellulolysis Machinery in Response to Cellulosic Materials with Subtle Differences in Chemical and Structural Properties. PLoS One 2017; 12:e0170524. [PMID: 28114419 PMCID: PMC5256962 DOI: 10.1371/journal.pone.0170524] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Accepted: 01/05/2017] [Indexed: 11/25/2022] Open
Abstract
Lignocellulosic materials from municipal solid waste emerge as attractive resources for anaerobic digestion biorefinery. To increase the knowledge required for establishing efficient bioprocesses, dynamics of batch fermentation by the cellulolytic bacterium Ruminiclostridium cellulolyticum were compared using three cellulosic materials, paper handkerchief, cotton discs and Whatman filter paper. Fermentation of paper handkerchief occurred the fastest and resulted in a specific metabolic profile: it resulted in the lowest acetate-to-lactate and acetate-to-ethanol ratios. By shotgun proteomic analyses of paper handkerchief and Whatman paper incubations, 151 proteins with significantly different levels were detected, including 20 of the 65 cellulosomal components, 8 non-cellulosomal CAZymes and 44 distinct extracytoplasmic proteins. Consistent with the specific metabolic profile observed, many enzymes from the central carbon catabolic pathways had higher levels in paper handkerchief incubations. Among the quantified CAZymes and cellulosomal components, 10 endoglucanases mainly from the GH9 families and 7 other cellulosomal subunits had lower levels in paper handkerchief incubations. An in-depth characterization of the materials used showed that the lower levels of endoglucanases in paper handkerchief incubations could hypothetically result from its lower crystallinity index (50%) and degree of polymerization (970). By contrast, the higher hemicellulose rate in paper handkerchief (13.87%) did not result in the enhanced expression of enzyme with xylanase as primary activity, including enzymes from the “xyl-doc” cluster. It suggests the absence, in this material, of molecular structures that specifically lead to xylanase induction. The integrated approach developed in this work shows that subtle differences among cellulosic materials regarding chemical and structural characteristics have significant effects on expressed bacterial functions, in particular the cellulolysis machinery, resulting in different metabolic patterns and degradation dynamics.
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Affiliation(s)
| | - Alain Guillot
- UMR 1319 MICALIS, PAPPSO, INRA, Jouy-en-Josas, France
| | | | | | | | | | | | | | | | - Diana Z. Sousa
- Centre of Biological Engineering, University of Minho, Braga, Portugal
- Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands
| | | | | | | | | | - Gérard Mortha
- LGP2, UMR CNRS 5518, Grenoble INP-Pagora, Saint Martin d'Hères, France
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Gildemyn S, Verbeeck K, Jansen R, Rabaey K. The type of ion selective membrane determines stability and production levels of microbial electrosynthesis. BIORESOURCE TECHNOLOGY 2017; 224:358-364. [PMID: 27923608 DOI: 10.1016/j.biortech.2016.11.088] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2016] [Revised: 11/20/2016] [Accepted: 11/21/2016] [Indexed: 06/06/2023]
Abstract
Microbial electrosynthesis (MES) can enable electricity-driven bioproduction from CO2. Several membrane types such as anion exchange, cation exchange, and bipolar membranes (AEM/CEM/BPM) can be used to separate the anodic oxidation from the biocathodic reduction. The impact of the membrane type on MES has not yet been studied. Therefore we compared the three membranes for MES of acetic acid. The reactor with AEM enabled in situ recovery of acetic acid. This extraction led to a 32% higher production rate and efficiency compared to the systems that did not include product recovery, as product inhibition was likely occurring. Besides H+/OH-, mainly HCO3- contributed to charge balancing. Due to water displacement across the membrane, the product concentration in the AEM reactor (9g/L) did not exceed the concentration in the CEM reactor (10.5g/L). Overall this comparison shows that the membrane type in MES can be critical towards a stable and efficient process.
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Affiliation(s)
- Sylvia Gildemyn
- Center for Microbial Ecology & Technology (CMET), Ghent University, Coupure Links 653, B-9000 Gent, Belgium
| | - Kristof Verbeeck
- Center for Microbial Ecology & Technology (CMET), Ghent University, Coupure Links 653, B-9000 Gent, Belgium
| | - Robbe Jansen
- Center for Microbial Ecology & Technology (CMET), Ghent University, Coupure Links 653, B-9000 Gent, Belgium
| | - Korneel Rabaey
- Center for Microbial Ecology & Technology (CMET), Ghent University, Coupure Links 653, B-9000 Gent, Belgium.
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Gildemyn S, Molitor B, Usack JG, Nguyen M, Rabaey K, Angenent LT. Upgrading syngas fermentation effluent using Clostridium kluyveri in a continuous fermentation. BIOTECHNOLOGY FOR BIOFUELS 2017; 10:83. [PMID: 28367228 PMCID: PMC5372331 DOI: 10.1186/s13068-017-0764-6] [Citation(s) in RCA: 66] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2017] [Accepted: 03/18/2017] [Indexed: 05/07/2023]
Abstract
BACKGROUND The product of current syngas fermentation systems is an ethanol/acetic acid mixture and the goal is to maximize ethanol recovery. However, ethanol currently has a relatively low market value and its separation from the fermentation broth is energy intensive. We can circumvent these disadvantages of ethanol production by converting the dilute ethanol/acetic acid mixture into products with longer carbon backbones, which are of higher value and are more easily extracted than ethanol. Chain elongation, which is the bioprocess in which ethanol is used to elongate short-chain carboxylic acids to medium-chain carboxylic acids (MCCAs), has been studied with pure cultures and open cultures of microbial consortia (microbiomes) with several different substrates. While upgrading syngas fermentation effluent has been studied with open cultures, to our knowledge, no study exists that has performed this with pure cultures. RESULTS Here, pure cultures of Clostridium kluyveri were used in continuous bioreactors to convert ethanol/acetic acid mixtures into MCCAs. Besides changing the operating conditions in regards to substrate loading rates and composition, the effect of in-line product extraction, pH, and the use of real syngas fermentation effluent on production rates were tested. Increasing the organic loading rates resulted in proportionally higher production rates of n-caproic acid, which were up to 40 mM day-1 (4.64 g L-1 day-1) at carbon conversion efficiencies of 90% or higher. The production rates were similar for bioreactors with and without in-line product extraction. Furthermore, a lower ethanol/acetic acid ratio (3:1 instead of 10:1) enabled faster and more efficient n-caproic acid production. In addition, n-caprylic acid production was observed for the first time with C. kluyveri (up to 2.19 ± 0.34 mM in batch). Finally, the use of real effluent from syngas fermentation, without added yeast extract, but with added defined growth factors, did maintain similar production rates. Throughout the operating period, we observed that the metabolism of C. kluyveri was inhibited at a mildly acidic pH value of 5.5 compared to a pH value of 7.0, while reactor microbiomes perform successfully at mildly acidic conditions. CONCLUSIONS Clostridium kluyveri can be used as a biocatalyst to upgrade syngas fermentation effluent into MCCAs at pH values above 5.5.
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Affiliation(s)
- Sylvia Gildemyn
- Cornell University, Biological and Environmental Engineering, Riley-Robb Hall, Ithaca, NY 14853 USA
- Ghent University, Center for Microbial Ecology and Technology (CMET), Coupure Links 653, 9000 Ghent, Belgium
- Organic Waste SystemsDok Noord 5, 9000 Ghent, Belgium
| | - Bastian Molitor
- Cornell University, Biological and Environmental Engineering, Riley-Robb Hall, Ithaca, NY 14853 USA
| | - Joseph G. Usack
- Cornell University, Biological and Environmental Engineering, Riley-Robb Hall, Ithaca, NY 14853 USA
| | - Mytien Nguyen
- Cornell University, Biological and Environmental Engineering, Riley-Robb Hall, Ithaca, NY 14853 USA
| | - Korneel Rabaey
- Ghent University, Center for Microbial Ecology and Technology (CMET), Coupure Links 653, 9000 Ghent, Belgium
| | - Largus T. Angenent
- Cornell University, Biological and Environmental Engineering, Riley-Robb Hall, Ithaca, NY 14853 USA
- University of Tübingen, Center for Applied GeoSciences, Hölderlinstr. 12, 72074 Tübingen, Germany
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