Medicinal plants meet modern biodiversity science

Identification of Botanicals Based on Their Chemical Barcode Using Ultraperformance Liquid Chromatography-Mass Spectrometry

RATIONALE

Plants synthesize diverse secondary metabolites, often specific to particular species. These metabolites (phytochemicals) exhibit restricted distribution among certain plant families, genera, or species. Due to their species-specific characteristics, they can serve as chemical markers to identify and authenticate economically important botanicals.

METHOD

Ultrahigh performance liquid chromatography-mass spectrometry (UHPLC-MS) and a plant metabolome reference library were utilized to identify and authenticate botanicals based on their characteristic phytochemicals.

RESULT

A chemical barcode refers to a unique molecular weight sequence (e.g., M.W. 216, 392, 390, 438, 542, 368, and 495 for Curcuma longa) of characteristic phytochemicals of particular plant species. This study reports the utilization of a plant metabolome library, LC-MS, and MS/MS data to facilitate the identification of botanicals based on their chemical barcode. We have analyzed 20 economically important medicinal plant species (A. nilotica, A. calamus, A. scholaris, B. monnieri, B. diffusa, C. asiatica, C. sativus, C. longa, F. religiosa, M. alba, M. fragrans, N. sativa, O. tenuiflorum, P. amarus, P. betel, P. longum, P. nigrum, P. pinnata, S. asoca, and V. negundo); no false results were observed in multiple tested samples. Apart from this, barcoded metabolites were also identified to validate the results based on previously reported phytochemicals from respective plant species and their mass spectrometry data.

CONCLUSION

This approach facilitated the successful identification of botanicals through their chemical barcode and utilized a web-based LC-MS/MS library of nontargeted plant secondary metabolites.

Suitable Planting Area Prediction for Two Arnebia Species: An Analysis Based on Habitat and Phytochemical Suitability

The distribution of suitable habitats for medicinal plants is affected by climate, soil, land use, and other factors. Arnebiae Radix, an important traditional Chinese medicinal resource in Xinjiang, includes Arnebia euchroma (Royle) I. M. Johnst. and Arnebia guttata Bunge and is at risk of over-exploitation. This study predicted suitable planting areas by integrating habitat and phytochemical suitability using the MaxEnt model and ArcGIS. The AUC values for A. euchroma and A. guttata were 0.977 and 0.952, with TSS values of 0.829 and 0.725, respectively, validating the high accuracy of the prediction model. Under the current scenario, the areas of suitable habitats for A. euchroma and A. guttata were 108,914 and 176,445 km2, mainly distributed along the main mountains in Xinjiang. Under future climate scenarios, the suitable habitat area of A. euchroma increased by 11-18%, except in the ssp126-2090s scenario, while the suitable habitat area of A. guttata area decreased by 3-18%. Both species were influenced by land use/land cover and soil available nitrogen content; additionally, A. euchroma was affected by the precipitation in the driest month, and A. guttata by the mean diurnal range. The content of secondary metabolites was positively correlated with habitat suitability, with soil factors contributing 35.25% to the total secondary metabolite content. Their suitable habitats predominantly occur in grasslands (42-82%). As habitat and phytochemical suitability distributions aligned, the eastern and western sides of the northern Kunlun Mountain Pass emerged as key areas for cultivation. This research can provide a scientific foundation for selecting optimal planting regions for the two Arnebia species.

A curated benchmark dataset for molecular identification based on genome skimming

Genome skimming is a promising sequencing strategy for DNA-based taxonomic identification. However, the lack of standardized datasets for benchmarking genome skimming tools presents a challenge in comparing new methods to existing ones. As part of the development of varKoder, a new tool for DNA-based identification, we curated four datasets designed for comparing molecular identification tools using low-coverage genomes. These datasets comprise vast phylogenetic and taxonomic diversity from closely related species to all taxa currently represented on NCBI SRA. One of them consists of novel sequences from taxonomically verified samples in the plant clade Malpighiales, while the other three datasets compile publicly available data. All include raw genome skim sequences to enable comprehensive testing and validation of a variety molecular species identification methods. We also provide the two-dimensional graphical representations of genomic data used in varKoder. These datasets represent a reliable resource for researchers to assess the accuracy, efficiency, and robustness of new tools to varKoder and other methods in a consistent and reproducible manner.

Health risks and toxicity mechanisms of medicinal and aromatic plants (MAPs): A comprehensive review of adverse effects on organ systems, genotoxicity and reproductive toxicity

The use of medicinal and aromatic plants (MAPs) requires careful evaluation due to their potential effects on human health. Assessing the risks, including toxicity and adverse effects, is essential to ensure their safe application. Our bibliometric analysis revealed a high prevalence of research focusing on MAPs' health impacts, with frequent mentions of "side effects" and "toxicity," emphasizing the need for further investigation into their active ingredients and mechanisms of action. The potential health effects of MAPs have been documented across various organ systems, including gastrointestinal (vomiting and diarrhea), renal (nephrotoxicity), hepatic (hepatotoxicity), and neurological (neurotoxicity). These effects arise from interactions between plant compounds and metabolic enzymes, cellular receptors, and signaling pathways, potentially leading to toxicity. The mechanisms discussed include oxidative stress, mitochondrial dysfunction, inhibition of metabolic enzymes, DNA damage (genotoxicity), and endocrine disruption, which may explain the diverse observed toxicological profiles. This review highlights the complex relationship between botanical substances and human health, integrating current applications while raising awareness of associated risks. It also underscores the importance of strict regulations and responsible use to ensure the safe and effective integration of MAPs into healthcare practices.

Neuroinflammation and Natural Antidepressants: Balancing Fire with Flora

Background/Objectives: Major depressive disorder (MDD) is a major global health concern that is intimately linked to neuroinflammation, oxidative stress, mitochondrial dysfunction, and complicated metabolic abnormalities. Traditional antidepressants frequently fall short, highlighting the urgent need for new, safer, and more acceptable therapeutic techniques. Phytochemicals, i.e., natural antidepressants derived from plants, are emerging as powerful plant-based therapies capable of targeting many pathogenic pathways at the same time. Summary: This narrative review synthesizes evidence from preclinical and clinical studies on the efficacy of phytochemicals such as curcumin, polyphenols, flavonoids, and alkaloids in lowering depressed symptoms. Consistent data show that these substances have neuroprotective, anti-inflammatory, and antioxidant properties, altering neuroimmune interactions, reducing oxidative damage, and improving mitochondrial resilience. Particularly, polyphenols and flavonoids have great therapeutic potential because of their capacity to penetrate the blood-brain barrier, inhibit cytokine activity, and encourage neuroplasticity mediated by brain-derived neurotrophic factor (BDNF). Despite promising results, the heterogeneity in study designs, phytochemical formulations, and patient demographics highlights the importance of thorough, standardized clinical studies. Conclusions: This review identifies phytochemicals as compelling adjuvant or independent therapies in depression treatment, providing multimodal mechanisms and enhanced tolerability. Additional research into improved dosage, pharmacokinetics, long-term safety, and integrative therapy approaches is essential. Using phytotherapeutics could considerably improve holistic and customized depression care, encouraging new research routes in integrative neuroscience and clinical psychiatry.

Benzyl Benzoate Isolation from Acridocarpus smeathmannii (DC.) Guill. & Perr Roots and Its Bioactivity on Human Prostate Smooth Muscle Contractions

Background/Objectives: This study is the first report on isolating a natural benzyl benzoate (nBB) from Acridocarpus smeathmannii (DC.) Guill. & Perr roots. Methods: The structure was verified using GC-MS, HPLC-UV-VIS, and two-dimensional NMR. Since it is known for its vasodilatory and anti-spasmolytic actions, we investigated the biological effects of nBB on human prostate smooth tissue (rPx) obtained from a radical prostatectomy. For this purpose, rPx was incubated with nBB (0.05, 0.25, or 0.5 µM) in an organ bath, and then cumulative concentration-response curves were constructed for adrenergic agonists and electrical field stimulation (EFS). Results: Adding the various concentrations, nBB showed potential inhibition during agonist-induced contractions (0.1-100 µM). Also, neurogenic contractions of rPx by EFS (2-32 Hz) were reduced by up to 57%. Conclusions: Overall, this study reports on an efficient protocol of nBB isolation from A. smeathmannii and its contractility effects on human prostate smooth muscle. Potentially, this could contribute to the natural production of BB from A. smeathmannii species while giving it evolutionary recognition. However, since BB influences prostate smooth muscle contractility, caution in patients taking herbal supplements containing nBB is essential, as this may play a role in contributing to the symptoms of urinary tract conditions.

Unveiling 8,12-Dimethoxysanguinarine: A Potent Inhibitor of Breast Cancer Metastasis via Fibronectin 1 Downregulation

This study investigated the effects of 8,12-dimethoxysanguinarine (DSG) from Eomecon chionantha Hance on the malignant biological activity of breast cancer cells. RNA-sequencing measure analysis revealed that metastasis-related genes were significantly downregulated in DSG-treated MCF-7 cells. DSG significantly inhibits the migration ability in MCF-7 cells. Molecular docking studies demonstrated significant interactions between DSG and the Fibronectin 1 (FN1) protein, with a binding energy of -8.91 kcal/mol. Additionally, FN1 messenger RNA expression was significantly upregulated in 1085 breast tumor samples compared to normal tissue in the Cancer Genome Atlas Breast Invasive Carcinoma Collection dataset. DSG also suppressed MCF-7 cell metastasis by downregulating FN1 expression. Furthermore, DSG was identified as a promising candidate based on absorption distribution metabolism excretion toxicity and drug-likeness assessments. Combination studies indicated that DSG synergized with the conventional chemotherapeutic agent doxorubicin to suppress MCF-7 cell migration, as confirmed by wound-healing and transwell assays. Collectively, these findings suggest that DSG may serve as a potential agent for inhibiting breast cancer cell metastasis by decreasing FN1 expression.

A Review of Phytochemical and Pharmacological Studies on Galium verum L., Rubiaceae

Galium verum (Yellow Bedstraw) is a rhizomatous perennial herb belonging to the Rubiaceae family. It is native to Eurasia and Africa but has also been introduced to southern Canada and the northern U.S. Widely used in traditional medicine, G. verum has been recognized for its diuretic, anti-inflammatory, antimicrobial, analgesic, and anticancer properties. Phytochemical studies have shown that the plant is rich in significant bioactive compounds, such as flavonoids, phenolic acids, iridoids, anthraquinones, phytosterols, coumarins, and tannins. Research suggests that G. verum exhibits strong antioxidant activity, protecting cells from oxidative stress and inflammation. Its antimicrobial potential has been demonstrated against various bacterial and fungal pathogens, supporting its traditional use in wound healing and infection treatment. Moreover, modern studies indicate its cytotoxic effects on cancer cells, suggesting potential applications in oncology. Additionally, its hepatoprotective and neuroprotective properties highlight its promise for treating metabolic and neurodegenerative disorders. Despite its well-known therapeutic potential, further studies are required to fully clarify its mechanisms of action and ensure its safety for medicinal use. Given the variety of bioactive compounds found in G. verum and their pharmacological benefits, this review emphasizes the importance of this species as a valuable medicinal plant, encouraging further scientific research for its application in pharmacology.

Mechanism of Mycotoxin Contamination of Medicinal Herbs

Mycotoxin contamination in medicinal plants can lead to toxicity, reduced therapeutic efficacy, and economic losses. This contamination has emerged as a significant issue, drawing attention from researchers and research centers worldwide. Over recent decades, numerous analytical studies have addressed mycotoxin contamination in these herbs, evaluating various methods to determine their presence quantitatively and qualitatively. While several reviews have summarized these studies, they often overlook a comprehensive exploration of the mechanisms and influencing factors of mycotoxin contamination in medicinal herbs. Therefore, this review aims to delve into the mechanisms of aflatoxin and ochratoxin contamination in some of the most widespread medicinal herbs, including jujube fruits, lotus seeds, and licorice roots. The factors influencing these mechanisms were also examined, including the physical composition and maturity stages of the herbs. This review concluded that aflatoxin and ochratoxin A contamination of medicinal herbs involves complex interactions between the herbs' natural defenses, fungal pathogenicity, chemical composition, physical characteristics, and individual plant differences at various maturity stages. Understanding these mechanisms of contamination, and their association with maturity, nutrient profile, and physical development, advances our comprehension of mycotoxin contamination in medicinal herbs.

Guidelines for the effective and ethical sampling of herbaria

The use of herbaria for science and conservation is enabling greatly enhanced scopes and scales of discovery, exploration and protection of biodiversity. The availability of digital, open-access herbarium data is, perhaps counter-intuitively, expanding the use of physical collections by researchers who use digital collections to find specimens and then sample physical collections for multiomics investigations, including genomics, transcriptomics, metabolomics, proteomics and microbiomics. These investigations are leading to new scientific insights and supporting the development of conservation actions, but they come with a substantial cost: the partial or complete destruction of often irreplaceable specimens, which constitute a global heritage that should be permanently safeguarded for future reference. Here we provide a set of recommended best practices for the sustainable, equitable and ethical sampling of herbarium specimens. Our recommendations are intended for two complementary and partially overlapping audiences-users and stewards-who together build, use and protect herbarium collections.

Application and development of CRISPR technology in the secondary metabolic pathway of the active ingredients of phytopharmaceuticals

As an efficient gene editing tool, the CRISPR/Cas9 system has been widely employed to investigate and regulate the biosynthetic pathways of active ingredients in medicinal plants. CRISPR technology holds significant potential for enhancing both the yield and quality of active ingredients in medicinal plants. By precisely regulating the expression of key enzymes and transcription factors, CRISPR technology not only deepens our understanding of secondary metabolic pathways in medicinal plants but also opens new avenues for drug development and the modernization of traditional Chinese medicine. This article introduces the principles of CRISPR technology and its efficacy in gene editing, followed by a detailed discussion of its applications in the secondary metabolism of medicinal plants. This includes an examination of the composition of active ingredients and the implementation of CRISPR strategies within metabolic pathways, as well as the influence of Cas9 protein variants and advanced CRISPR systems in the field. In addition, this article examines the long-term impact of CRISPR technology on the progress of medicinal plant research and development. It also raises existing issues in research, including off-target effects, complexity of genome structure, low transformation efficiency, and insufficient understanding of metabolic pathways. At the same time, this article puts forward some insights in order to provide new ideas for the subsequent application of CRISPR in medicinal plants. In summary, CRISPR technology presents broad application prospects in the study of secondary metabolism in medicinal plants and is poised to facilitate further advancements in biomedicine and agricultural science. As technological advancements continue and challenges are progressively addressed, CRISPR technology is expected to play an increasingly vital role in the research of active ingredients in medicinal plants.

Old Plants for New Food Products? The Diachronic Human Ecology of Wild Herbs in the Western Alps

This ethnobotanical study examines the traditional knowledge and usage patterns of wild plants in the western Alps, specifically within the Ubaye and Bellino Valleys, through a comparative analysis of data collected from 1983 (published in 1990) to 2024. Our study aims to assess the change in plant usage, species diversity, and the changing roles of plants in local traditions in the western Alpine mountain ecosystems. While the 1983 survey documented medicinal uses centered around pastoralist practices, the 2024 data highlight a notable increase in the use of synanthropic plants, now utilized both medicinally and as food. Several species such as Allium sativum, Artemisia absinthium, and Urtica dioica have shown resilience and continuity in local cultural practices, maintaining medicinal, culinary, and ritual significance across the four decades. The 1983 survey documented the greatest variety of species (101), a number that decreased in subsequent studies. The 2009 survey identified 36 species not previously recorded in 1983, and the 2024 field study noted an additional 20 species. The study highlights the economic potential of several wild species in these alpine areas, such as Achillea, Artemisia, Verbascum, Veronica, Viola, Polygonum, Bunium, and Sorbus spp., which could be utilized for creating new herbal teas, artisanal beers, liqueurs, ice creams, sweets, and seasoned food products. Expanding the uses of these plants could not only preserve ethnobotanical knowledge but also stimulate local economies and support sustainable development in alpine communities. The documented temporal shifts in plant usage reflect broader cultural, ecological, and socio-economic changes, underscoring the importance of preserving biodiversity and traditional knowledge amidst ongoing environmental and societal shifts. This study underlines the need to conserve ethnobotanical heritage while adapting to the evolving landscape of the region. Future research could focus on exploring the role of these species in broader sustainability initiatives, including conservation strategies, ecosystem services, and community-based tourism while continuing to document the cultural dynamics influencing plant usage.

Phytochemical Composition and Bioactivities of Some Hydrophytes: Antioxidant, Antiparasitic, Antibacterial, and Anticancer Properties and Mechanisms

Few researches have explored the production of pharmaceuticals from aquatic plants. Therefore, this study explored, for the first time, the phytochemical composition and bioactivities of ten aquatic plants. Aquatic plant shoots from various Nile River canals were collected, dried, and ground for aqueous extract preparation. Phytochemical composition and antioxidant capacity were assessed using DPPH assays. Extracts were tested for antiparasitic, antibacterial, anti-biofilm, and anticancer activities through standard in vitro assays, measuring IC50 values, and evaluating mechanisms of action, including cell viability and high-content screening assays. The results showed that the aquatic plants were rich in pharmaceutical compounds. The antioxidant capacity of these extracts exceeded that of vitamin C. The extracts showed promising antiparasitic activity against pathogens like Opisthorchis viverrini and Plasmodium falciparum, with IC50 values between 0.7 and 2.5 µg/mL. They also demonstrated low MICs against various pathogenic bacteria, causing DNA damage, increased plasma membrane permeability, and 90% biofilm inhibition. In terms of anticancer activity, extracts were effective against a panel of cancer cell lines, with Ludwigia stolonifera exhibiting the highest efficacy. Its IC50 ranged from 0.5 µg/mL for pancreatic, esophageal, and colon cancer cells to 1.5 µg/mL for gastric cancer cells. Overall, IC50 values for all extracts were below 6 µg/mL, showing significant apoptotic activity, increased nuclear intensity, plasma membrane permeability, mitochondrial membrane permeability, and cytochrome c release, and outperforming doxorubicin. This study highlights the potential of aquatic plants as sources for new, safe, and effective drugs with strong antiparasitic, antibacterial, and anticancer properties.