1
|
Chen M, Xu Z. A deep learning classification framework for research methods of marine protected area management. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 368:122228. [PMID: 39182377 DOI: 10.1016/j.jenvman.2024.122228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Revised: 08/07/2024] [Accepted: 08/15/2024] [Indexed: 08/27/2024]
Abstract
The latest emerging transdisciplinary marine protected area (MPA) research scheme requires efficient approaches for theoretically based and data-driven method integration. However, due to the rapid development and diversification of research methods, it is growingly difficult to locate new methods in methodological dimensions and integrate them to the utmost utility. This study proposes a deep learning-based classification framework for MPA management methods focused particularly on data and theory capabilities using natural language processing (NLP). It extracted keywords from academic sources and performed clustering based on semantic similarity, generating benchmark texts for abstract labeling. By training the deep learning NLP model and analyzing the abstracts of 9049 MPA management empirical research articles from 1986 to 2024, the data and theory scores were attributed to each article, and a total of 19 major method categories and 110 segment branches were identified in qualitative, quantitative, and mixed genres. Combination types of research methods were summarized, yielding the data-theory neutralization principle where the average data and theory scores tend to approximate 0.50. Applying the principle broadens traditional boundaries for method integration and extends method synthesis to higher numbers, generating a practical research 2paradigm for future MPA research. Implications include bridging social and ecological data, theorizing emergent challenges in complex systems and integrating theory construction and data science. The framework is applicable to quantification of other environmental management disciplines and can serve as guidance for multidisciplinary method integration. © 2017 Elsevier Inc. All rights reserved.
Collapse
Affiliation(s)
- Mingbao Chen
- Center of Marine Development, Macau University of Science and Technology, Macau, 999078, China; Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai, 51900, China; Marine Development Research Institute, Ocean University of China, Qingdao, 266049, China.
| | - Zhibin Xu
- Center of Marine Development, Macau University of Science and Technology, Macau, 999078, China; The Institute of Sustainable Development, Macau University of Science and Technology, Macau, 999078, China
| |
Collapse
|
2
|
Bicknell RDC, Schmidt M, Rahman IA, Edgecombe GD, Gutarra S, Daley AC, Melzer RR, Wroe S, Paterson JR. Raptorial appendages of the Cambrian apex predator Anomalocaris canadensis are built for soft prey and speed. Proc Biol Sci 2023; 290:20230638. [PMID: 37403497 PMCID: PMC10320336 DOI: 10.1098/rspb.2023.0638] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Accepted: 06/08/2023] [Indexed: 07/06/2023] Open
Abstract
The stem-group euarthropod Anomalocaris canadensis is one of the largest Cambrian animals and is often considered the quintessential apex predator of its time. This radiodont is commonly interpreted as a demersal hunter, responsible for inflicting injuries seen in benthic trilobites. However, controversy surrounds the ability of A. canadensis to use its spinose frontal appendages to masticate or even manipulate biomineralized prey. Here, we apply a new integrative computational approach, combining three-dimensional digital modelling, kinematics, finite-element analysis (FEA) and computational fluid dynamics (CFD) to rigorously analyse an A. canadensis feeding appendage and test its morphofunctional limits. These models corroborate a raptorial function, but expose inconsistencies with a capacity for durophagy. In particular, FEA results show that certain parts of the appendage would have experienced high degrees of plastic deformation, especially at the endites, the points of impact with prey. The CFD results demonstrate that outstretched appendages produced low drag and hence represented the optimal orientation for speed, permitting acceleration bursts to capture prey. These data, when combined with evidence regarding the functional morphology of its oral cone, eyes, body flaps and tail fan, suggest that A. canadensis was an agile nektonic predator that fed on soft-bodied animals swimming in a well-lit water column above the benthos. The lifestyle of A. canadensis and that of other radiodonts, including plausible durophages, suggests that niche partitioning across this clade influenced the dynamics of Cambrian food webs, impacting on a diverse array of organisms at different sizes, tiers and trophic levels.
Collapse
Affiliation(s)
- Russell D. C. Bicknell
- Palaeoscience Research Centre, School of Environmental and Rural Science, University of New England, Armidale 2351, Australia
- Division of Paleontology, American Museum of Natural History, New York, NY 10027, USA
| | - Michel Schmidt
- Bavarian State Collection of Zoology, Bavarian Natural History Collections, Munich, Germany
- Yunnan Key Laboratory for Palaeobiology, Institute of Palaeontology, Yunnan University, North Cuihu Road 2, Kunming 650091, People's Republic of China
| | - Imran A. Rahman
- The Natural History Museum, Cromwell Road, London SW7 5BD, UK
- Oxford University Museum of Natural History, Oxford OX1 3PW, UK
| | | | - Susana Gutarra
- The Natural History Museum, Cromwell Road, London SW7 5BD, UK
| | - Allison C. Daley
- Institute of Earth Sciences, University of Lausanne, Lausanne CH-1015, Switzerland
| | - Roland R. Melzer
- Bavarian State Collection of Zoology, Bavarian Natural History Collections, Munich, Germany
- Faculty of Biology, Biocenter, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
- GeoBio-Center, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Stephen Wroe
- Palaeoscience Research Centre, School of Environmental and Rural Science, University of New England, Armidale 2351, Australia
- Function, Evolution and Anatomy Research Lab, School of Environmental and Rural Science, University of New England, Armidale, New South Wales 2351, Australia
| | - John R. Paterson
- Palaeoscience Research Centre, School of Environmental and Rural Science, University of New England, Armidale 2351, Australia
| |
Collapse
|
3
|
Woodhouse A, Swain A, Fagan WF, Fraass AJ, Lowery CM. Late Cenozoic cooling restructured global marine plankton communities. Nature 2023; 614:713-718. [PMID: 36792824 DOI: 10.1038/s41586-023-05694-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2022] [Accepted: 01/03/2023] [Indexed: 02/17/2023]
Abstract
The geographic ranges of marine organisms, including planktonic foraminifera1, diatoms, dinoflagellates2, copepods3 and fish4, are shifting polewards owing to anthropogenic climate change5. However, the extent to which species will move and whether these poleward range shifts represent precursor signals that lead to extinction is unclear6. Understanding the development of marine biodiversity patterns over geological time and the factors that influence them are key to contextualizing these current trends. The fossil record of the macroperforate planktonic foraminifera provides a rich and phylogenetically resolved dataset that provides unique opportunities for understanding marine biogeography dynamics and how species distributions have responded to ancient climate changes. Here we apply a bipartite network approach to quantify group diversity, latitudinal specialization and latitudinal equitability for planktonic foraminifera over the past eight million years using Triton, a recently developed high-resolution global dataset of planktonic foraminiferal occurrences7. The results depict a global, clade-wide shift towards the Equator in ecological and morphological community equitability over the past eight million years in response to temperature changes during the late Cenozoic bipolar ice sheet formation. Collectively, the Triton data indicate the presence of a latitudinal equitability gradient among planktonic foraminiferal functional groups which is coupled to the latitudinal biodiversity gradient only through the geologically recent past (the past two million years). Before this time, latitudinal equitability gradients indicate that higher latitudes promoted community equitability across ecological and morphological groups. Observed range shifts among marine planktonic microorganisms1,2,8 in the recent and geological past suggest substantial poleward expansion of marine communities even under the most conservative future global warming scenarios.
Collapse
Affiliation(s)
- Adam Woodhouse
- University of Texas Institute for Geophysics, University of Texas at Austin, Austin, TX, USA.
| | - Anshuman Swain
- Department of Biology, University of Maryland, College Park, MD, USA.,Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA.,Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA.,Department of Paleobiology, National Museum of Natural History, Washington, DC, USA
| | - William F Fagan
- Department of Biology, University of Maryland, College Park, MD, USA
| | - Andrew J Fraass
- School of Earth and Ocean Sciences, University of Victoria, Victoria, British Columbia, Canada.,Invertebrate Paleontology, The Academy of Natural Sciences of Drexel University, Philadelphia, PA, USA.,School of Earth Science, University of Bristol, Bristol, UK
| | - Christopher M Lowery
- University of Texas Institute for Geophysics, University of Texas at Austin, Austin, TX, USA
| |
Collapse
|
4
|
Klein B, Swain A, Byrum T, Scarpino SV, Fagan WF. Exploring noise, degeneracy, and determinism in biological networks with the einet package. Methods Ecol Evol 2022. [DOI: 10.1111/2041-210x.13805] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Brennan Klein
- Network Science Institute Northeastern University Boston MA USA
- Laboratory for the Modeling of Biological and Socio‐Technical Systems Northeastern University Boston MA USA
| | | | - Travis Byrum
- Department of Biology University of Maryland MD USA
| | - Samuel V. Scarpino
- Network Science Institute Northeastern University Boston MA USA
- Santa Fe Institute Santa Fe NM USA
- Vermont Complex Systems Center University of Vermont Burlington VT USA
- Pandemic Prevention Institute Rockefeller Foundation Washington USA
| | | |
Collapse
|