Metagenomic insight into the bioaugmentation mechanism of Phanerochaete chrysosporium in an activated sludge system treating coking wastewater

Hybrid peroxymonosulfate/activated carbon fiber-sequencing batch reactor system for efficient treatment of coking wastewater: Establishment and influential factors

Coking wastewater contains high concentrations of toxic and low biodegradable organics, causing long hydraulic retention times for its biological treatment process. This study developed a pretreatment method for coking wastewater by using activated carbon fiber (ACF) activated peroxymonosulfate (PMS) to improve the treatment performance of subsequent biological post-treatment process, sequencing batch reactor (SBR). The results showed that, after optimization of treatment processes, the removal efficiency of chemical oxygen demand (COD), phenol, and chroma in coking wastewater reached to 76, 98, and 98%, respectively, with a significantly improved biodegradability. Compared with the sole SBR system without any pretreatment that could remove 73% of COD, the ACF/PMS+SBR system removed over 97% of COD in coking wastewater. Moreover, this pretreatment method facilitated the growth of functional bacteria for organics biodegradation, indicating its high potential as a highly efficacious pretreatment strategy to improve the overall treatment efficiency of coking wastewater.

Re-vitalizing Wastewater: Nutrient Recovery and carbon capture through Microbe-Algae synergy using Omics-Biology

Increasing amounts of wastewater is the most pervasive and challenging environmental problem globally. Conventional treatment methods are costly and entail huge energy and carbon consumption and greenhouse gas emissions. Owing to their unique ability of carbon capturing and resource recovery, microalgae-microbiome based treatment is a potential approach and is widely used for carbon-neutral wastewater treatment. Microalgae-bacteria synergy (i.e., the functionally beneficial microbial synthetic communities) performs better and enhances carbon-sequestration and nutrient recovery from wastewater treatment plants. This review presents a comprehensive information regarding the potential of microalgae-microbiome as a sustainable agent for wastewater and discusses synergistic approaches for effective nutrient removal. Moreover, this review discusses, the role of omics-biology and Insilco approaches in unravelling and understanding the algae-microbe synergism and their response toward wastewater treatment. Finally, it discusses various microbiome engineering approaches for developing the effective microalgae-bacteria partners for carbon sequestration and nutrient recovery from wastewater, and summarizes future research perspectives on microalgae-microbiome based bioremediation.

Effects of the invasion of Ralstonia solanacearum on soil microbial community structure in Wuhan, China

This study investigated the change in the microbiome of tomato rhizosphere soils after the invasion of Ralstonia solanacearum and analyzed the correlation between microbes and soil physicochemical properties. Diversity analyses of the bacteria in healthy and diseased rhizosphere soil samples (HRS and DRS) revealed that HRS had a higher species diversity and were compositionally different from DRS (P ≤ 0.05). Substantial differences in the relative abundance of Actinobacteria (37.52% vs 28.96%, P ≤ 0.05) and Proteobacteria (29.20% vs 35.59%, P ≤ 0.05) were identified in HRS and DRS, respectively. Taxonomic composition analysis showed ten differentially abundant genera, and seven of them (Gaiella, Roseisolibacter, Solirubrobacter, Kribbella, Acidibacter, Actinomarinicola, and Marmoricola) are more abundant in HRS. Soil pH and enzyme activities were negatively correlated with the abundance of R. solanacearum. The contents of total nitrogen (TN), total phosphorus (TP), total potassium (TK), alkaline nitrogen (alkaline N), available phosphorus (AP), available potassium (AK), NO3-N(NN), NH4+-N (AN), and organic matter (OM) were all significantly increased in DRS. The composition and richness of protozoa in the samples show significant differences. Cephalobus, Acrobeles, Heteromita, norank_Tylenchida, and Rotylenchulus were enriched in DRS. Microbial interaction networks revealed that the HRS networks were more complex than the DRS networks. Overall, the results of this study demonstrate that healthy soil has a more complex microbial community structure and higher enzyme activity, and the invasion of R. solanacearum damages the soil microbial system.IMPORTANCEHow does the invasion of Ralstonia solanacearum affect tomato rhizosphere bacteria and protozoa? Which microbial changes can affect the growth of R. solanacearum? To date, most research studies focus on bacteria, with little research on protozoa, and even less on the synergistic effects between protozoa and bacteria. Here, we analyzed the correlation between tomato rhizosphere bacterial and protozoan communities and soil physicochemical properties during the invasion of R. solanacearum. We found that the diversity and abundance of rhizosphere microorganisms in healthy rhizosphere soil samples (HRS) were significantly higher than those in diseased rhizosphere soil samples (DRS), and there were significant changes in soil pH and enzyme activity. Overall, in this study, the analysis of microbial changes during the invasion of R. solanacearum provides a theoretical basis for the prevention and control of bacterial wilt.

Fungus reduces tetracycline-resistant genes in manure treatment by predation of bacteria

New strategies to remove antibiotic resistance genes (ARGs), one of the most pressing threats to public health, are urgently needed. This study showed that the fungus Phanerochaete chrysosporium seeded to a composting reactor (CR) could remarkably reduce tetracycline-resistant genes (TRGs). The reduction efficiencies for the five main TRGs (i.e., tetW, tetO, tetM, tetPA, and tet(32)) increased by 8 to 100 folds compared with the control without P. chrysosporium, and this could be attributed to the decrease in the quantity of bacteria. Enumeration based on green fluorescence protein labeling further showed that P. chrysosporium became dominant in the CR. Meanwhile, the bacteria in the CR invaded the fungal cells via the cell wall defect of chlamydospore or active invasion. Most of the invasive bacteria trapped inside the fungus could not survive, resulting in bacterial death and the degradation of their TRGs by the fungal nucleases. As such, the predation of tetracycline-resistant bacteria by P. chrysosporium was mainly responsible for the enhanced removal of TRGs in the swine manure treatment. This study offers new insights into the microbial control of ARGs.

Advances in Algomics technology: Application in wastewater treatment and biofuel production

Advanced sustainable bioremediation is gaining importance with rising global pollution. This review examines microalgae's potential for sustainable bioremediation and process enhancement using multi-omics approaches. Recently, microalgae-bacterial consortia have emerged for synergistic nutrient removal, allowing complex metabolite exchanges. Advanced bioremediation requires effective consortium design or pure culture based on the treatment stage and specific roles. The strain potential must be screened using modern omics approaches aligning wastewater composition. The review highlights crucial research gaps in microalgal bioremediation. It discusses multi-omics advantages for understanding microalgal fitness concerning wastewater composition and facilitating the design of microalgal consortia based on bioremediation skills. Metagenomics enables strain identification, thereby monitoring microbial dynamics during the treatment process. Transcriptomics and metabolomics encourage the algal cell response toward nutrients and pollutants in wastewater. Multi-omics role is also summarized for product enhancement to make algal treatment sustainable and fit for sustainable development goals and growing circular bioeconomy scenario.

New insight into the mechanisms of autochthonous fungal bioaugmentation of phenanthrene in petroleum contaminated soil by stable isotope probing

Autochthonous fungal bioaugmentation (AFB) is considered a reliable bioremediation approach for polycyclic aromatic hydrocarbon (PAH) contamination, but little is known about its mechanisms in contaminated soils. Here, a microcosm experiment was performed to explore the AFB mechanisms associated with two highly efficient phenanthrene degrading agents of fungi (with laccase-producing Scedosporium aurantiacum GIG-3 and non-laccase-producing Aspergillus fumigatus LJD-29), using stable-isotope-probing (SIP) and high-throughput sequencing. The results showed that each fungus markedly improved phenanthrene removal, and microcosms with both fungi exhibited the best phenanthrene removal performance among all microcosms. Additionally, AFB markedly shifted the composition of the microbial community, particularly the phenanthrene-degrading bacterial taxa. Interestingly, based on SIP results, strains GIG-3 and LJD-29 did not assimilate phenanthrene directly during AFB, but instead played key roles in the preliminary decomposition of phenanthrene though secretion of different extracellular enzymes to oxidize the benzene ring (GIG-3 bioaugmentation with laccase, and LJD-29 bioaugmentation with manganese and lignin peroxidases). In addition, all functional degraders directly involved in phenanthrene assimilation were indigenous bacteria, while native fungi rarely participated in the direct phenanthrene mineralization. Our findings provide a new mechanism of AFB with multiple fungi, and support AFB as a promising strategy for the in situ bioremediation of PAH-contaminated soil.

Long-term stability of reactor microbiome through bioaugmentation with Alcaligenes aquatilis AS1 promotes nitrogen removal of piggery wastewater

Bioaugmentation is considered as an attractive method for nitrogen removal in water treatment, but its effectiveness in actual high-strength piggery wastewater has not been adequately verified and the mechanism of bioaugmentation in actual wastewater treatment system is not very clear especially from the perspectives of microbial communities and functional genes. This study investigated the mechanisms of a heterotrophic nitrifying-aerobic denitrifying strain Alcaligenes aquatilis AS1 in the bioaugmentation of continuous biological nitrogen removal of actual piggery wastewater at laboratory scale. The addition of strain AS1 significantly improved the nitrogen removal efficiency (more than 95% of NH₄⁺-N and 75% of TN were removed) and raised the activated sludge resistance to shock loading. AS1 addition also significantly shifted the microbiota structure and interactions among microbial networks were enhanced to obtain the stable bacterial communities. Moreover, strain AS1 achieved effective proliferation and long-term colonization in activated sludge with a relative abundance of genus Alcaligenes more than 70% during the whole operation process and played a dominant role in biological nitrogen removal, while different genera were respectively enriched and involved in pollutants removal at different stages in the control group. In addition, the abundances of most functional genes involved in carbon (C) degradation, carbon fixation and nitrogen (N), phosphorus (P), sulfur (S) cycling in activated sludge were significantly increased in reactor AS1, indicating that strain AS1 not only relied on its unique C and N metabolic activities, but also recruited microorganisms with diverse functions to jointly remove pollutants in wastewater, which could be a common bioaugmentation mechanism in open reactors. This study proves the promising application prospect of strain AS1 in the treatment of high-strength piggery wastewater and shows great importance for guiding bioaugmentation application of functional strains in practical wastewater treatment systems.

Reduction of metronidazole in municipal wastewater and protection of activated sludge system using a novel immobilized Aspergillus tabacinus LZ-M

Metronidazole (MNZ) accumulation inhibits municipal wastewater treatment bio-systems, and an effective solution to augment anaerobic activated sludge (AAS) is required. This research discovered that Aspergillus tabacinus LZ-M could degrade 77.39% of MNZ at 5 mg/L. MNZ was metabolized into urea, and the enzymes involved in its degradation were aminotransferase, methyltransferase, monooxygenase, and CN cleavage hydrolase. The strain was immobilized in polyurethane foam and used in AAS for the treatment of MNZ-containing municipal wastewater. The results showed that, using immobilized LZ-M, MNZ was completely removed, and the degradation efficiency of wastewater's chemical oxygen demand (COD) was increased from 11.7% to 83.31%. The extracellular polymer and ROS levels indicated that MNZ's toxicity on AAS was reduced. Furthermore, bioaugmentation stabilized its microbial community, and decreased MNZ resistance genes. These observations confirm that the immobilized fungi are effective in protecting AAS against antibiotic contamination in the treatment process of municipal wastewater.

The research progress, hotspots, challenges and outlooks of solid-phase denitrification process

Nitrogen pollution is one of the main reasons for water eutrophication. The difficulty of nitrogen removal in low-carbon wastewater poses a huge potential threat to the ecological environment and human health. As a clean biological nitrogen removal process, solid-phase denitrification (SPD) was proposed for long-term operation of low-carbon wastewater. In this paper, the progress, hotspots, and challenges of the SPD process based on different solid carbon sources (SCSs) are reviewed. Compared with synthetic SCS and natural SCS, blended SCSs have more application potential and have achieved pilot-scale application. Differences in SCSs will lead to changes in the enrichment of hydrolytic microorganisms and hydrolytic genes, which indirectly affect denitrification performance. Moreover, the denitrification performance of the SPD process is also affected by the physical and chemical properties of SCSs, pH of wastewater, hydraulic retention time, filling ratio, and temperature. In addition, the strengthening of the SPD process is an inevitable trend. The strengthening measures including SCSs modification and coupled electrochemical technology are regarded as the current research hotspots. It is worth noting that the outbreak of the COVID-19 epidemic has led to the increase of disinfection by-products and antibiotics in wastewater, which makes the SPD process face challenges. Finally, this review proposes prospects to provide a theoretical basis for promoting the efficient application of the SPD process and coping with the challenge of the COVID-19 epidemic.

Bioaugmentation of quinoline-degrading bacteria for coking wastewater treatment: performance and microbial community analysis

Ochrobactrum sp. XKL1, previously found to have the ability to efficiently degrade quinoline, was bioaugmented into a lab-scale A/O/O system to treat real coking wastewater. During the bioaugmentation stage, the removal of quinoline and pyridine of the O1 tank could be enhanced by 9.88% and 7.96%, respectively. High-throughput sequencing analysis indicated that the addition of XKL1 could significantly affect the alteration of microbial community structure in the sludge. In addition, the relative abundance of Ochrobactrum has demonstrated a trend of increasing first followed by decreasing with the highest abundance of 7.87% attained on the 94th day. The bioaugmentation effects lasted for about 14 days after the strains was inoculated into the reactor. Although a decrease in the relative abundance of XKL1 was observed for a rather short period of time, the bioaugmented A/O/O system has been proven to be more effective in the removal of organic pollutants than the control. Hence, the results of this study indicated that the bioaugmentation with XKL1 is a feasible operational strategy that would be able to enhance the removal of NHCs in the treatment of coking wastewater with complex composition and high organic concentrations.

Application oriented bioaugmentation processes: Mechanism, performance improvement and scale-up

Bioaugmentation is an optimization method with great potential to improve the treatment effect by introducing specific strains into the biological treatment system. In this study, a comprehensive review of the mechanism of bioaugmentation from the aspect of microbial community structure, the optimization methods facilitating application as well as feasible approaches of scale-up application has been provided. The different contribution of indigenous and exogenous strains was critically analyzed, the relationship between microbial community variation and system performance was clarified. Operation regulation and immobilization technologies are effective methods to deal with the possible failure of bioaugmentation. The gradual expansion from lab-scale, pilot scale to full-scale, the transformation and upgrading of wastewater treatment plants through the combination of direct dosing and biofilm, and the application of side-stream reactors are feasible ways to realize the full-scale application. The future challenges and prospects in this field were also proposed.

Advances in treatment of coking wastewater - a state of art review

Coking wastewater poses a serious threat to the environment due to the presence of a wide spectrum of refractory substances such as phenolic compounds, polycyclic aromatic hydrocarbons and heterocyclic nitrogenous compounds. These toxic substances are difficult to treat using conventional treatment methods alone. In recent years much attention has been given to the effective treatment of coking wastewater. Thus, this review seeks to provide a brief overview of recent developments that have taken place in the treatment of coking wastewater. In addition, this article addresses the complexity and the problems associated with treatment followed by a discussion on biological methods with special focus on bioaugmentation. As coking wastewater is refractory in nature, some of the studies have been related to improving the biodegradability of wastewater. The final section focuses on the integrated treatment methods that have emerged as the best solution for tackling the highly unmanageable coking wastewater. Attention has also been given to emerging microwave technology which has tremendous potential for treatment of coking wastewater.

Biological Mitigation of Antibiotic Resistance Gene Dissemination by Antioxidant-Producing Microorganisms in Activated Sludge Systems

Antibiotic resistance is the principal mechanism of an evergrowing bacterial threat. Antibiotic residues in the environment are a major contributor to the spread of antibiotic resistance genes (ARGs). Subinhibitory concentrations of antibiotics cause bacteria to produce reactive oxygen species (ROS), which can lead to mutagenesis and horizontal gene transfer (HGT) of ARGs; however, little is known about the mitigation of ARG dissemination through ROS removal by antioxidants. In this study, we examine how antioxidant-producing microorganisms inoculated in replicate activated sludge systems can biologically mitigate the dissemination of ARGs. Through quantitative polymerase chain reaction (qPCR), we showed that antioxidant-producing microorganisms could decrease the persistence of the RP4 plasmid and alleviate enrichment of ARGs (sul1) and class 1 integrons (intl1). Metagenomic sequencing identified the most diverse resistome and the most mutated Escherichia coli ARGs in the reactor that contained antibiotics but no antioxidant-producing microorganisms, suggesting that antioxidant-producing microorganisms mitigated ARG enrichment and mutation. Host classification revealed that antioxidant-producing microorganisms decreased the diversity of ARG hosts by shaping the microbial community through competition and functional pathway changes. Conjugative experiments demonstrated that conjugative transfer of ARGs could be mitigated by coculture with antioxidant-producing microorganisms. Overall, this is a novel study that shows how ARG enrichment and HGT can be mitigated through bioaugmentation with antioxidant-producing microorganisms.

Stimulation of sewage sludge treatment by carbon sources and bioaugmentation with a sludge-derived microbial consortium

Recently, sewage sludge (SS) disposal has become one of the greatest global challenges. In this study, we aimed to evaluate the effect of faba bean straw (Straw-B), wheat straw (Straw-W), and wood-chip pellets (WCP) amended to SS, as well as bioaugmentation (BA), on the physicochemical characteristics and structure of the microbial community of the treated SS. Sixteen days of incubation of SS-containing mixtures revealed the highest efficiency of Straw-W(BA) in terms of SS stabilisation, i.e., the highest and most stable respiration intensity, the lowest ammonia emission, and the highest stimulation effect on the cress seedling growth. Shotgun sequencing data analysis showed that Proteobacteria dominated in the raw SS with 60.17% reads, which consisted of 16.40%, 29.18%, and 12.33% of Alphaproteobacteria, Betaproteobacteria, and Gammaproteobacteria, respectively. All treated samples were characterised by an increased abundance of Firmicutes (32.70-53.84%). A remarkable increase in virus abundance (0.34% reads) was detected in the treated SS, which was incubated without C amendment and bioaugmentation. The addition of C sources to the SS changed some physicochemical characteristics of the mixture. All of these findings provide novel insights toward a mechanistic understanding of the fate of the human sewage microbiome in wastewater and other environments.

Enhancement of PAHs biodegradation in biosurfactant/phenol system by increasing the bioavailability of PAHs

The poor bioavailability of polycyclic aromatic hydrocarbons (PAHs) is the main limiting factor for their biodegradation in contaminated sites. The addition of biosurfactant is an effective method for enhancing the bioavailability of PAHs. Suitable low molecular weight (LMW) organic matters have been shown to increase the bioavailability of PAHs. Therefore, we investigated the effect of phenol, which often co-exists with PAHs, on the biodegradation of PAHs in biosurfactant solution. The results show that the critical micelle concentration (CMC) of the biosurfactant decreased after phenol was added. The formation of mixed micelles resulted in enhancement of PAHs dissolution. The weight solubilization ratio (WSR) values of biosurfactant for Phe, Pyr and BaP in phenol solution are approximately 1.34, 1.40 and 1.67 times that of the control group, respectively. Phenol, therefore, can assist biosurfactant to increase the availability of PAHs by microbes. The bioavailability of PAHs in sludge increased from 27.7% to 43.1% after the biosurfactant was added, and reached a maximum of 49.2%, following the simultaneous addition of phenol and biosurfactant. Phenol also improved the degradation of PAHs by Stenotrophomonas sp. N5 in biosurfactant solution.

Diversity and structure of phenanthrene degrading bacterial communities associated with fungal bioremediation in petroleum contaminated soil

Fungal bioremediation is a promising technique for the cleanup of sites contaminated with polycyclic aromatic hydrocarbons (PAHs). However, due to limited understanding of the composition and dynamics of the native PAH-degrading microorganisms in contaminated sites, its application has been difficult. In the present study, DNA stable-isotope probing was performed to identify indigenous phenanthrene (PHE)-degrading bacteria and determine their diversity during the fungal bioremediation process. The results showed a total of 14 operational taxonomic units (OTUs) enriched in the heavy DNA fractions, which were related to seven genera (Sphingomonas, Sphingobacterium, Acidovorax, Massilia, Flavobacterium, Cupriavidus, Aeromicrobium, and unclassified Chitinophagaceae). Along with enhanced efficiency of PHE removal, the number and diversity of indigenous PHE-degrading bacteria in soil bioaugmented with fungi were significantly increased. Furthermore, based on the results of linear model analysis, we found that PHE degraders affiliated with the genus Sphingomonas were significantly enriched during fungal bioremediation. Moreover, fungal bioaugmentation promoted indigenous functional Proteobacteria involved in PAH degradation through co-metabolism, suggesting that PAH biodegradation was attributable to cooperative metabolism by fungi and indigenous bacteria. Our findings provide new insights into the diversity of PHE-degrading communities and support a more comprehensive view of the fungal bioremediation process.

Activated sludge treatment for promoting the reuse of a synthetic produced water in irrigation

Large volumes of produced water are generated as a byproduct in activities of oil and gas exploitation, which can be reused in agriculture after a treatment process. Activated sludge treatment has been successfully used to remove oil from wastewater, but systematic studies on the toxicity of this effluent using this treatment are scarce in the literature. In this study, it was investigated the performance of an activated sludge system in the treatment of a synthetic produced water under different initial conditions in terms of salinity and oil and grease concentration. Furthermore, it was evaluated this effluent phytotoxicity in the germination, and seedling and plant growths of sunflower and corn seeds using untreated and treated synthetic produced water. Results revealed the activated sludge effectiveness in oil and grease and salinity removal from produced water, viz. high removal efficiency of 99.01 ± 0.28 and 91.07 ± 0.39%., respectively. Untreated produced water showed considerable toxic effects on the germination (74.67 ± 2.31% and 82.67 ± 2.31 for sunflower and corn seeds, respectively) and growth stages of sunflower and corn seed plants. The germination percentage was approximately 100% for both types of seed. The seedling and plant growth of the two seeds irrigated with treated produced water had similar performance when used tap water. These results highlighted the potential reuse as an unconventional water resource for plant irrigation of the synthetic produced water treated by an activated sludge process, which technology has showed high removal performance of salinity and oil.

Treatment of coking wastewater in biofilm-based bioaugmentation process: Biofilm formation and microbial community analysis

Coking wastewater (CWW) containing complicated organic compositions and strong toxicity cause potential hazards to natural water bodies as well as human health. The aim of this study was integrating newly isolated Comamonas sp. ZF-3, biofilm-based bioaugmentation and fluidized bed reactor into an anoxic filter-fluidized bed reactor (AF-FBR) system to treat actual CWW. The results showed that 93 % of chemical oxygen demand (COD) and 97 % of ammonia nitrogen (NH₄⁺-N) removal efficiency were achieved with hydraulic retention time of 70 h. The main pollutants including phenolic compounds, heterocyclic compounds and polycyclic aromatic hydrocarbons could be removed via biofilm-based process in AF-FBR. The formation of carrier biofilm was consistent with the system performance as well as the biofilm community evolution, during which the microbial community was gradually dominated by some functional genus (e.g., Comamonas, Thiobacillus, Pseudomonas and Thauera), meanwhile, ammonium-oxidizing bacteria Nitrosomonas, nitrite-oxidizing bacteria Nitrospira and denitrifiers (e.g., Pseudomonas, Thiobacillus and Bacillus) coexisted in biofilm to form a microbial community for biological nitrogen removal. Such microbial community structure explained the observed simultaneous removal of COD and NH₄⁺-N in the AF-FBR.

Insights into electroactive biofilms for enhanced phenolic degradation of coal pyrolysis wastewater (CPW) by magnetic activated coke (MAC): Metagenomic analysis in attached biofilm and suspended sludge

To investigate the role of electroactive biofilms for enhanced phenolic degradation, lignite activated coke (LAC) and MAC were used as carriers in moving-bed biofilm reactor (MBBR) for CPW treatment. In contrast to activated sludge (AS) reactor, the carriers improved degradation performance of MBBR. Although two MBBRs exerted similar degradation capacity with over 92% of COD and 93% phenols removal under the highest phenolics concentration (500 mg/L), the effluent of MAC-based MBBR remained higher biodegradability (BOD₅/COD = 0.34 vs 0.18) than that of LAC-based MBBR. Metagenomic analysis revealed that electroactive biofilms determined phenolic degradation of MAC-based MBBR. Primarily, Geobacter (17.33%) started Fe redox cycle on biofilms and developed syntrophy with Syntrophorhabdus (6.47%), which fermented phenols into easily biodegradable substrates. Subsequently, Ignavibacterium (3.38% to 2.52%) and Acidovorax (0.46% to 8.83%) conducted biological electricity from electroactive biofilms to suspended sludge. They synergized with dominated genus in suspended sludge, Alicycliphilus (19.56%) that accounted for phenolic oxidation and nitrate reduction. Consequently, the significantly advantage of Geobater and Syntrophorhabdus was the keystone reason for superior biodegradability maintenance of MAC-based MBBR.

Immobilized-microbial bioaugmentation protects aerobic denitrification from heavy metal shock in an activated-sludge reactor

The inhibition of denitrification by heavy metals is a problem in nitrogen wastewater treatment, but the solutions are rarely studied. In this study, Pseudomonas brassicacearum LZ-4, immobilized in sodium alginate-kaolin, was applied in an activated-sludge reactor to protect denitrifiers from hexavalent chromium (Cr(VI)). Q-PCR result showed that the strain LZ-4 was incorporated into activated sludge under the help of immobilization. In the non-bioaugmentation system, the removal efficiency of nitrate was decreased by 86.07% by 30 mg/L Cr(VI). Whereas, denitrification was protected and 95% of nitrate was removed continuously in immobilized-cell bioaugmentation system. Miseq sequencing data showed that bioaugmentation decreased the impact of Cr(VI) on microbial communities and increased the abundance of denitrifiers. Based on the results of biomass and extracellular polymers, activated sludge was protected from Cr(VI) toxicity. This discovery will provide a feasible technique for nitrogen wastewater treatment in the presence of distressing heavy metals.

Ecological and functional research into microbiomes for targeted phenolic removal in anoxic carbon-based fluidized bed reactor (CBFBR) treating coal pyrolysis wastewater (CPW)

Powdered activated carbon (PAC), lignite activated coke (LAC) and Fe-C carriers were applied to enhance CBFBRs to degrade targeted phenolics. In start-up stage, PAC and LAC equipped CBFBRs with higher environment adaptability and phenolic degradation capacity for phenol (>96%), p-cresol (>91%) and 3, 5-dimethylphenol (>84%) in comparison to Fe-C carrier. In recovery stage, the superior performance was also identified for CBFBRs in basis of PAC and LAC than Fe-C-based reactor. However, the Fe-C carrier assisted CBFBR with more stable degradation performance under impact loading. By comparing microbiomes, significantly enriched Brachymonas (54.80%-68.81%) in CBFBRs exerted primary role for phenolic degradation, and positively contributed to microbial network. Meanwhile, Geobacter in Fe-C-based reactor induced excellent impact resistance by enhancing interspecific electron transfer among microbes. Furthermore, the investigation on functional genes related to phenolic degradation revealed that anaerobic pathway accounted for demethylation procedure, while aerobic pathways dominated the phenolic ring-cleavage process.

Bioremediation process optimization and effective reclamation of mixed carbamate-contaminated soil by newly isolated Acremonium sp

Global pollution from excessive pesticide use has become a serious environmental and public health problem. The aim of the study was to optimize the fungal mediated simultaneous removal of carbofuran and carbaryl from soil. Carb-PV5 strain was isolated from contaminated soil following enrichment culture technique; based on 18S rRNA sequencing, strain was identified as Acremonium sp. (MK514615); Field Emission Scanning Electron Microscopic analysis reflected its morphology. Towards the development of bioaugmentation strategy for the bioremediation of carbamate-contaminated soil, the process parameters were optimized employing Central Composite Rotatable Method. The experimental studies were performed in the range of biomass (0.2-0.6 g kg^-1), temperature (23-33 °C), pH (6-9) and moisture (10-30%). The degradation rate parameters, k and t_1/2 were determined to as 0.475, 0.325 d^-1 and 5.39, 2.1 d with the corresponding r² of 0.9491, 0.9964 for zero and first order, respectively. The cube root growth kinetic constant k of Acremonium sp. varied from 0.0469 to 0.0512 (g^1/3 L^-1/3 h^-1) and 0.0378 to 0.0415 (g^1/3 L^-1/3 h^-1) for carbofuran and carbaryl, respectively. To confirm the model appropriacy and sustainability of the optimization procedure, bioremediation experiments were conducted onto real carbamate-contaminated soils. UPLC and GCMS analysis confirmed the successful removal of carbamates. The current study presents the first report on the bioaugmentation studies carried out on the mixed carbamate contaminated soil using newly isolated Acremonium sp.

Characterization of a newly isolated strain Comamonas sp. ZF-3 involved in typical organics degradation in coking wastewater

The aim of this study was to investigate the characteristic of a newly isolated strain Comamonas sp. ZF-3 involved in typical organics degradation in coking wastewater (CWW). The results showed that the isolated strain had efficient biodegradability of phenolic compounds and heterocyclic compounds in CWW, meanwhile, phenol and indole could be respectively used as sole carbon source for its growth, which demonstrated the bioaugmentation potential of the isolated strain in CWW treatment. During phenol and indole degradation processes, part of metabolites (e.g., 2,3-hexanedione, 2-ethyl-1-hexanol, nonanal, 2-propyl-1-heptanol, butanoic acid, butyl ester and butanoic acid, anhydride) remained in effluents, with NH₄⁺-N concentration having no obvious reduction, which implied the biological treatment of CWW should be accomplished by complex microbial communities in many steps.

Effects of Low Concentration of Selected Analgesics and Successive Bioaugmentation of the Activated Sludge on Its Activity and Metabolic Diversity

In this study, we evaluated the impact of the successive bioaugmentation of the activated sludge (AS) with the defined bacterial consortium on the activity and functional capacity of the AS microorganisms. In parallel, the removal of low concentrations of the selected non-steroidal anti-inflammatory drugs (ibuprofen, naproxen, diclofenac) and analgesic paracetamol was studied. We found that the addition of the bacterial consortium consisting of three pharmaceuticals-degrading strains Bacillus thuringiensis B1 (2015b), Stenotrophomonas maltophilia KB2, and Pseudomonas moorei KB4 into the AS did not cause any significant changes in the biomass abundance and metabolic activity of the AS microorganisms. Although, the successive bioaugmentation of the AS caused a slight increase in the metabolic diversity, the intensity of carbohydrates usage, and metabolic richness. Microorganisms in the bioaugmented and non-bioaugmented AS were able to degrade the mixture of the analyzed drugs with similar efficiency, however, diclofenac was removed more effectively in the bioaugmented AS. Several metabolites were identified and efficiently utilized, with the exception of 4-OH diclofenac. Two new diclofenac-degrading strains assigned as Serratia proteamaculans AS4 and Rahnella bruchi AS7 were isolated from the diclofenac-treated AS.

Structure and function of microbial community involved in a novel full-scale prefix oxic coking wastewater treatment O/H/O system

A novel full-scale prefix oxic coking wastewater (CWW) biological treatment O/H/O system had been operated steadily six years with the effluent quality meeting national discharge standard. Comparing to the traditional CWW biological treatment process, which usually have an anaerobic unit at the start of the process, here the O/H/O system has obvious advantages in COD removal, total nitrogen removal and reduced energy consumption. It is very necessary to illustrate the structure and function of the microbial community involved in different bioreactors of the O/H/O system. High-throughput MiSeq sequencing was used to examine the 16S rRNA genes in this system. Results revealed a contrasting microbial composition among the activated sludge samples of three sequential bioreactors: the β-Proteobacteria related sequences dominated in the O₁ activated sludge with the relative abundance of 56.44% while 7.53% of the sequences were assigned to Thiobacillus; Rhodoplanes related sequences dominated in the bioreactor H and O₂ activated sludge with relative abundance of 8.86% and 8.92%, respectively. The physico-chemical characteristics of CWW were analyzed by standard methods and the operational parameters were routinely monitored to examine their effects on the microbial communities. The bioinformatics software package of phylogenetic investigation of communities by reconstruction of unobserved states (PICRUSt) was used to predict the microbial community functional profiling and found three dominant genera of Rhodoplanes, Lysobacter and Leucobacter enriched the xenobiotics biodegradation and metabolism pathway. The diverse and distinct microbial community involved in biological treatment processes of CWW treatment indicating that water characteristics and operational parameters determined the microbial community composition. These results significantly expanded our knowledge of the biodiversity and population dynamics of microorganisms and discerned the relationships between bacterial communities and environmental variables in the biological treatment processes. Moreover, in this study, we proposed a comprehensive biodegradation model of CWW treatment and defined as O/H/O system.

Omics approaches for microalgal applications: Prospects and challenges

In recent impetus of phycological research, microalgae have emerged as a potential candidate for various arena of application-driven research. Omics-based tactics are used for disentangling the regulation and network integration for biosynthesis/degradation of metabolic precursors, intermediates, end products, and identifying the networks that regulate the metabolic flux. Multi-omics coupled with data analytics have facilitated understanding of biological processes and allow ample access to diverse metabolic pathways utilized for genetic manipulations making microalgal factories more efficient. The present review discusses state-of-art "Algomics" and the prospect of microalgae and their role in symbiotic association by using omics approaches including genomics, transcriptomics, proteomics and metabolomics. Microalgal based uni- and multi-omics approaches are critically analyzed in wastewater treatment, metal toxicity and remediation, biofuel production, and therapeutics to provide an imminent outlook for an array of environmentally sustainable and economically viable microalgal applications.

Microbial community assembly in detergent wastewater treatment bioreactors: Influent rather than inoculum source plays a more important role

In this study, three sequencing batch reactors Ra, Rb, Rc with different inoculum sources (activated sludge; activated sludge plus detergent degrading consortium; detergent degrading consortium) were used to treat detergent wastewater [consisting of sodium dodecyl sulfate, polyoxyethylene lauryl ether and tetrasodium ethylenediamine tetraacetate (Na₄EDTA)]. Fast start-up and highest performance in phase I and II (organic loading rate were 0.28, 0.39 kgCOD/kgMLSS/d, respectively) were observed in Rc. In contrast, Rb showed highest impact resistance to the increase of EDTA concentration in phase III. High-throughput sequencing analysis showed that inoculum sources led to significant differences on microbial community in phase I. However, regardless of the influent variation in phases II and III, the differences on microbial community among three SBRs were diminished along long-term operation. Pseudomonas, Sphingopyxis, Luteimonas, Pseudoxanthomonas and SM1A02 were found to be the core taxa, they might contribute to the excellent performance of detergent wastewater treatment.

Influence of irrigation with microalgae-treated biogas slurry on agronomic trait, nutritional quality, oxidation resistance, and nitrate and heavy metal residues in Chinese cabbage

Biogas slurry (BS) is a main byproduct of biogas production that is commonly used for agricultural irrigation because of its abundant nutrients and microelements. However, direct application of BS may cause quality decline and nitrate and heavy metal accumulation in crops. To address this issue, a microalgae culture experiment and an irrigation experiment were performed to evaluate the removal efficiencies of nutrients and heavy metals from diluted BS by microalgae Scenedesmus sp. and to investigate the effects of irrigation with microalgae-treated BS (MBS-25, MBS-50, MBS-75, and MBS-100) on nutritional quality, oxidation resistance, and nitrate and heavy metal residues in Chinese cabbage. After 8 days of continuous culture, a ratio of 1/1 for BS/tap water mixture (BS-50) was the optimal proportion for microalgal growth (3.73 g dry cell L^-1) and efficient removal of total nitrogen (86.1%), total phosphorus (94.3%), COD (87.5%), Cr (50%), Pb (60.7%), and Cd (59.7%). The pH in MBS-50 medium recovered to the highest level in a shorter period of time and accelerated the gas stripping of ammonia nitrogen and the formation of insoluble phosphate and metals, which partly contributed to the high removal efficiencies. MBS irrigation significantly promoted crop growth; improved nutritional quality, edible taste, and oxidation resistance; and reduced nitrate and heavy metal residues in Chinese cabbage at a large scale. Therefore, microalgae culture was beneficial to reduce negative impacts of BS irrigation in crop growth and agricultural product safety. This study may provide a theoretical basis for the safe utilization of BS waste in agricultural irrigation.

Synergistic degradation on phenolic compounds of coal pyrolysis wastewater (CPW) by lignite activated coke-active sludge (LAC-AS) process: Insights into succession of microbial community under selective pressure

This study illustrated synergistic degradation of phenolic compounds by LAC-AS process via the insight into succession of microbial community under selective pressure. The results demonstrated that high phenols exhibited toxicity pressure to single AS process by eliminating non-tolerate bacteria, inducing vicious circulation by intermediates (catechol, nitrate, etc.) accumulation. However, LAC exerted another selective pressure and facilitated positive bio-community succession of moving biological bed reactor (MBBR). Firstly, it created rich microenvironments for diverse bacteria and promoted resilient adsorption for phenols with the assistance of biodegradation. Secondly, LAC enriched facultative bacteria, which developed multiple degradation paths on phenols and nitrogen based on multifunctional genes, counteracting the toxicity pressure. Specifically, phenols were degraded by the combination of anaerobic hydrolysis and oxidation, while conventional and shortcut nitrification-denitrification (SND) and nitrogen fixation all participated in nitrogen removal, achieving high removal of COD (93.49%), Tph (93.74%), TN (92.20%) and NH₄⁺-N (93.20%) under the highest phenols.

Biodegradation of di-butyl phthalate (DBP) by a novel endophytic bacterium Bacillus subtilis and its bioaugmentation for removing DBP from vegetation slurry

Di-butyl phthalate (DBP) is a widely used plasticizer, recalcitrant and hazardous organic compound with high detection frequencies and concentrations in water and soil that pose a great threat to human health. A novel endphytic bacterium strain N-1 capable of efficiently degrading DBP and utilizing it as sole carbon source was isolated from Ageratum conyzoides. This bacterium was identified as Bacillus subtilis based on its morphological characteristics and 16S rDNA sequence analysis. Under the optimal culture conditions (pH 7.0, 30 °C), degradation percentage of DBP (12.5-100 mg/L) was up to 95% within five days, and its biodegradation half-life was less than 7.23 h. Degradation percentage of high DBP concentration (200 mg/L) was relatively lower (89%) with half-life of 56.8 h. DBP was degraded by Bacillus subtilis N-1 into mono-butyl phthalate and phthalic acid as evidenced by GC-MS analysis. Bioaugmentation of Youngia japonica plant slurry with strain N-1 greatly accelerated DBP dissipation with 97.5% removal percentage (higher by 47% than non-inoculation). The results highlighted that strain N-1 has great potential for bioremediation by plant-endophyte partnerships and for lowering PAE accumulation in crops.

Combination of bioaugmentation and biostimulation for remediation of paddy soil contaminated with 2,4-dichlorophenoxyacetic acid

The batch and fed-batch tests were performed to evaluate the efficiency of bioaugmentation in combination with biostimulation for remediation of paddy soil contaminated with 2,4-dichlorophenoxyacetic acid (2,4-D). 2,4-D degrading enrichments were used for bioaugmentation, and effluents prepared through biological hydrogen production process were used as substrate for biostimulation. The batch tests indicated that 2,4-D degradation depended on the enrichment/substrate ratio (E/S), where E/S of 0.03 showed an excellent performance. The fed-batch tests showed that biostimulation only led to an improvement in 2,4-D degradation, while the pattern of repeated augmentation of enrichments (FRA) together with biostimulation obviously improved degradation of 2,4-D, 2-chlorophenol (2-CP) and phenol. DNA-sequencing approach showed that the FRA pattern altered the bacterial community composition, and high removal of 2,4-D, 2-CP and phenol may be attributed to the acclimation and persistence of Thauera. The findings demonstrated the importance of the FRA pattern on remediation of paddy soil contaminated with 2,4-D.

Enhanced phenol removal in an innovative lignite activated coke-assisted biological process

In this study, a lignite activated coke (LAC)-assisted activated sludge (AS) process was developed for enhancing biodegradation of phenol, while the effects of LAC on sludge properties and microbial community structure were investigated. It was found that more than 90% of phenol was removed within 1 h in the LAC/AS, which was 3 times higher than the conventional AS process. Moreover, the floc size and settleability were also significantly improved in the LAC/AS. These results suggested that LAC could serve as the nucleating agent to promote the formation of compact floc, which was beneficial for toxicity mitigation and system stability. The microbial community analysis by 16S high-throughput pyrosequencing technology further revealed a more abundant bacterial richness and diversity in the LAC/AS process loaded with phenol, while some phenol degraders, such as Propionibacteriaceae were enriched. Engineering implications further suggests the LAC-assisted AS process is technically sound and economically viable.

Cometabolic degradation of low-strength coking wastewater and the bacterial community revealed by high-throughput sequencing

Cometabolism technology was employed to degrade low-strength coking wastewater (CWW) in Sequencing Batch Reactor (SBR). The bacterial community compositions were monitored by high-throughput sequencing. Cometabolic substrate effectively improved the chemical oxygen demand (COD) removal efficiency in glucose-added system (A1) compared to glucose-free system (A0). Meanwhile, A1 exhibited larger biomass, better settlement performance, and higher dehydrogenase activity (DHA). More importantly, high-throughput sequencing revealed that dominant populations in A1 were quite different with A0. Thauera (9.27%), Thermogutta (7.58%), and Defluviimonas (4.6%) began to enrich in A1 after cometabolic substrate supplement. Especially, Thauera, as the most dominant populations in Al, could degrade a wide spectrum of aromatic compounds, which may contribute to the better system performance. This work would provide a novel option to treat low-strength CWW, discern the relationship between bacterial community and CWW quality, and further explore the cometabolic degradation through bacterial community structures.

Possible mechanisms of control of Fusarium wilt of cut chrysanthemum by Phanerochaete chrysosporium in continuous cropping fields: A case study

Continuous cropping is a universal challenge in agriculture because it has adverse physiological effects on plants, resulting in stunting, inferior quality, and even massive loss in harvest due to diseases. In this study, Phanerochaete chrysosporium was inoculated into the field in which cut chrysanthemum had already been continuously cropped for five years to control wilt disease. After 120 days of cultivation, the addition of P. chrysosporium significantly improved the physiological status of plants and changed the bacterial and fungal community structure in the soil. The bacterial quantity in the treatment increased by 1.76 times, but the fungal quantity, especially the quantity of Fusarium oxysporum, decreased significantly in comparison with the control. The investigation into the mechanisms of control of Fusarium wilt of cut chrysanthemum by P. chrysosporium showed that P. chrysosporium in soil can inhibit the growth of F. oxysporum and decrease p-hydroxybenzoic acid (HA), which stimulates the propagation of F. oxysporum. Based on current evidence, the inhibition by P. chrysosporium and change in HA appear to be the main causes of the alleviation of wilt disease in the treatment. Other factors, such as nutrients, might also have an influence on the wilt disease of cut chrysanthemum.