Comprehensive analysis of transcriptional and proteomic profiling reveals silver nanoparticles-induced toxicity to bacterial denitrification

Respiration and growth of Paracoccus denitrificans R-1 with nitrous oxide as an electron acceptor

In the nitrogen biogeochemical cycle, the reduction of nitrous oxide (N2O) to N2 by N2O reductase, which is encoded by nosZ gene, is the only biological pathway for N2O consumption. In this study, we successfully isolated a strain of denitrifying Paracoccus denitrificans R-1 from sewage treatment plant sludge. This strain has strong N2O reduction capability, and the average N2O reduction rate was 5.10 ± 0.11 × 10-9 µmol·h-1·cell-1 under anaerobic condition in a defined medium. This reduction was accompanied by the stoichiometric consumption of acetate over time when N2O served as the sole electron acceptor and the reduction can yield energy to support microbial growth, suggesting that microbial N2O reduction is related to the energy generation process. Genomic analysis showed that the gene cluster encoding N2O reductase of P. denitrificans R-1 was composed of nosR, nosZ, nosD, nosF, nosY, nosL, and nosZ, which was identified as that in other strains in clade I. Respiratory inhibitors test indicated that the pathway of electron transport for N2O reduction was different from that of the traditional electron transport chain for aerobic respiration. Cu2+, silver nanoparticles, O2, and acidic conditions can strongly inhibit the reduction, whereas NO3- or NH4+ can promote it. These findings suggest that modular N2O reduction of P. denitrificans R-1 is linked to the electron transport and energy conservation, and dissimilatory N2O reduction is a form of microbial anaerobic respiration.

IMPORTANCE

Nitrous oxide (N2O) is a potent greenhouse gas and contributor to ozone layer destruction, and atmospheric N2O has increased steadily over the past century due to human activities. The release of N2O from fixed N is almost entirely controlled by microbial N2O reductase activities. Here, we investigated the ability to obtain energy for the growth of Paracoccus denitrificans R-1 by coupling the oxidation of various electron donors to N2O reduction. The modular N2O reduction process of denitrifying microorganism not only can consume N2O produced by itself but also can consume the external N2O generated from biological or abiotic pathways under suitable condition, which should be critical for controlling the release of N2O from ecosystems into the atmosphere.

Effects of sliver nanoparticles on nitrogen removal by the heterotrophic nitrification-aerobic denitrification bacteria Zobellella sp. B307 and their toxicity mechanisms

Due to the widespread use of sliver nanoparticles (AgNPs), a large amount of AgNPs has inevitably been released into the environment, and there is growing concern about the toxicity of AgNPs to nitrogen-functional bacteria. In addition to traditional anaerobic denitrifying bacteria, heterotrophic nitrification-aerobic denitrification (HNAD) bacteria are also important participants in the nitrogen cycle. However, the mechanisms by which AgNPs influence HNAD bacteria have yet to be explicitly demonstrated. In this study, the inhibitory effects of different concentrations of AgNPs on a HNAD bacteria Zobellella sp. B307 were investigated, and the underlying mechanism was explored by analyzing the antioxidant system and the activities of key denitrifying enzymes. Results showed that AgNPs could inhibit the growth and the HNAD ability of Zobellella sp. B307. AgNPs could accumulate on the surface of bacterial cells and significantly destroyed the cell membrane integrity. Further studies demonstrated that the presence of high concentration of AgNPs could result in the overproduction of reactive oxygen species (ROS) and related oxidative stress in the cells. Furthermore, the catalytic activities of key denitrifying enzymes (nitrate reductase (NAR), nitrite reductase (NIR), and nitrous oxide reductase (N2OR)) were significantly suppressed under exposure to a high concentration of AgNPs (20 mg·L-1), which might be responsible for the inhibited nitrogen removal performance of strain B307. This work could improve our understanding of the inhibitory effect and underlying mechanism of AgNPs on HNAD bacteria.

Agroecological transition: towards a better understanding of the impact of ecology-based farming practices on soil microbial ecotoxicology

Alternative farming systems have developed since the beginning of industrial agriculture. Organic, biodynamic, conservation farming, agroecology and permaculture, all share a grounding in ecological concepts and a belief that farmers should work with nature rather than damage it. As ecology-based agricultures rely greatly on soil organisms to perform the functions necessary for agricultural production, it is thus important to evaluate the performance of these systems through the lens of soil organisms, especially soil microbes. They provide numerous services to plants, including growth promotion, nutrient supply, tolerance to environmental stresses and protection against pathogens. An overwhelming majority of studies confirm that ecology-based agricultures are beneficial for soil microorganisms. However, three practices were identified as posing potential ecotoxicological risks: the recycling of organic waste products, plastic mulching, and pest and disease management with biopesticides. The first two because they can be a source of contaminants; the third because of potential impacts on non-target microorganisms. Consequently, developing strategies to allow a safe recycling of the increasingly growing organic matter stocks produced in cities and factories, and the assessment of the ecotoxicological impact of biopesticides on non-target soil microorganisms, represent two challenges that ecology-based agricultural systems will have to face in the future.

Efficient photocatalytic reduction of nitrate byproducts during anammox process by novel extracellular polymeric substances-embedded NH2-MIL-101(Fe) photocatalysts

Anaerobic ammonium oxidation (anammox) is an efficient nitrogen removal process; however, nitrate byproducts hampered its development. In this study, extracellular polymeric substances (EPS) were embedded into NH2-MIL-101(Fe), creating NH2-MIL-101(Fe)@EPS to reduce nitrate. Results revealed that chemical nitrate reduction efficiency of NH2-MIL-101(Fe)@EPS surpassed that of NH2-MIL-101(Fe) by 17.3 %. After adding 0.5 g/L NH2-MIL-101(Fe)@EPS within the anammox process, nitrate removal efficiency reached63.9 %, consequently elevating the total nitrogen removal efficiency to 92.4 %. 16S rRNA sequencing results elucidated the predominant role of Candidatus Brocadia within NH2-MIL-101(Fe)@EPS-anammox system. Concurrently, sufficient photogenerated electrons were transferred to microorganisms, promoting the growth of Desnitratisoma and OLB17. Additionally, photogenerated electrons activated flavin and Complex III, thereby up-regulating crucial genes involved in intra/extracellular electron transfer. Subsequently, denitrification and dissimilatory nitrate reduction to ammonium were activated to reduce nitrate. In summary, this study achieved a notable rate of photocatalytic nitrate reduction within anammox process through the NH2-MIL-101(Fe)@EPS photocatalysts.

Comprehensive response of microbes to Ag and Ag2S nanoparticles and silver spatial distribution in constructed wetlands

This study investigated functional bacteria, key enzymes, and nitrogen metabolism in vertical flow constructed wetlands (CWs) after exposing to silver, silver sulfide nanoparticles (Ag NPs and Ag2S NPs), and silver iron (Ag+), and silver spatial distribution in CWs for 155 days. Ag NPs and Ag2S NPs affected species richness and diversity whereas Ag+ showed the higher the species diversity indices. Sequencing analysis exhibited that Ag NPs or Ag+ significantly inhibited nitrogen metabolic process by hindering the relative activity of functional enzymes, downregulating relative abundances of nrfA, norB and napA for Ag NPs, nxrA gene for Ag+, while Ag2S NPs inhibited relative abundance of nirA. The above results confirmed that NPs or Ag+ significantly reduced nitrogen removal and Ag NPs mainly inhibited NO3--N removal while Ag+ significantly suppressed NH4+-N removal. This study also found that CWs could effectively remove NPs or Ag+ (about 98 %), and nanoparticles showed higher translocation factors (TFs) values (0.81-1.15 or 0.36), indicating nanoparticles transported easily through substrate layers.

Effects of silver nanoparticles and various forms of silver on nitrogen removal by the denitrifier Pseudomonas stutzeri and their toxicity mechanisms

Silver nanoparticles (AgNPs) are widely used in daily life and industry because of their excellent antibacterial properties. AgNPs can exist in wastewater in various forms, such as Ag+, Ag2SO4, Ag2CO3, Ag2S, Ag2O, and AgCl. To assess the potential environmental risk of AgNPs and various forms of Ag, their toxic effects were investigated using the common denitrifier species Pseudomonas stutzeri (P. stutzeri). The inhibitory effect of AgNPs and various forms of Ag on P. stutzeri growth and its denitrification performance occurred in a concentration-dependent manner. The denitrification efficiency of P. stutzeri decreased from 95%∼97% to 89∼95%, 74∼95%, and 56∼85% under low, medium, and high exposure doses, respectively, of AgNPs and various forms of Ag. The changes in cell membrane morphology and increases in lactate dehydrogenase (LDH) release indicated that AgNPs and various forms of Ag damaged the cell membrane of P. stutzeri. Oxidative stress caused by excessive accumulation of reactive oxygen species (ROS) increased superoxide dismutase (SOD) and catalase (CAT) activities and decreased glutathione (GSH) levels. Overall, this study will help elucidate the impact of AgNPs and their transformation products on nitrogen removal efficiency in wastewater biological treatment systems.

Reveal molecular mechanism on the effects of silver nanoparticles on nitrogen transformation and related functional microorganisms in an agricultural soil

Silver nanoparticles (AgNPs) are widely present in aquatic and soil environment, raising significant concerns about their impacts on creatures in ecosystem. While the toxicity of AgNPs on microorganisms has been reported, their effects on biogeochemical processes and specific functional microorganisms remain relatively unexplored. In this study, a 28-day microcosmic experiment was conducted to investigate the dose-dependent effects of AgNPs (10 mg and 100 mg Ag kg-1 soil) on nitrogen transformation and functional microorganisms in agricultural soils. The molecular mechanisms were uncovered by examining change in functional microorganisms and metabolic pathways. To enable comparison, the toxicity of positive control with an equivalent Ag+ dose from CH3COOAg was also included. The results indicated that both AgNPs and CH3COOAg enhanced nitrogen fixation and nitrification, corresponding to increased relative abundances of associated functional genes. However, they inhibited denitrification via downregulating nirS, nirK, and nosZ genes as well as reducing nitrate and nitrite reductase activities. In contrast to high dose of AgNPs, low levels increased bacterial diversity. AgNPs and CH3COOAg altered the activities of associated metabolic pathways, resulting in the enrichment of specific taxa that demonstrated tolerance to Ag. At genus level, AgNPs increased the relative abundances of nitrogen-fixing Microvirga and Bacillus by 0.02 %-629.39 % and 14.44 %-30.10 %, respectively, compared with control group (CK). The abundances of denitrifying bacteria, such as Rhodoplanes, Pseudomonas, and Micromonospora, decreased by 19.03 % to 32.55 %, 24.73 % to 50.05 %, and 15.66 % to 76.06 %, respectively, compared to CK. CH3COOAg reduced bacterial network complexity, diminished the symbiosis mode compared to AgNPs. The prediction of genes involved in metabolic pathways related to membrane transporter and cell motility showed sensitive to AgNPs exposure in the soil. Further studies involving metabolomics are necessary to reveal the essential effects of AgNPs and CH3COOAg on biogeochemical cycle of elements in agricultural soil.

Effects of released organic components of solid carbon sources on denitrification performance and the related mechanism

Here, a hybrid scaffold of polyvinyl alcohol/sodium alginate (PVA/SA) was used to prepare solid carbon sources (SCSs) for treating low carbon/nitrogen wastewater. The four SCSs were divided into two groups, biodegradable polymers group (including polyvinyl alcohol-sodium alginate (PS) and PS-PHBV (PP), and blended SCSs (PS-PHBV-wood chips (PPW) and PS-PHBV-wheat straw (PPS)). After the leaching experiments, no changes occurred in elemental composition and functional groups of the SCSs, and the released dissolved organic matter showed a lower degree of humification and higher content of labile molecules in the blended SCSs groups using EEM and FT-ICR-MS. The denitrification performance of the blended SCSs was higher, with nitrate removal efficiency over 84%. High-throughput sequencing confirmed PPW had the highest alpha-diversity, and the microbial community structure significantly varied among SCSs. Results of functional enzymes and genes show the released carbon components directly affect the NADH level and electron transfer efficiency, ultimately influencing denitrification performance.

Transcriptomic and proteomic profiling reveals toxicity and molecular action mechanisms of bioengineered chitosan‑iron nanocomposites against Xanthomonas oryzae pv. oryzae

Bacterial leaf blight (BLB) pathogen, Xanthomonas oryzae pv. oryzae (Xoo) is the most devastating bacterial pathogen, which jeopardizes the sustainable rice (Oryza sativa L.) production system. The use of antibiotics and conventional pesticides has become ineffective due to increased pathogen resistance and associated ecotoxicological concerns. Thus, the development of effective and sustainable antimicrobial agents for plant disease management is inevitable. Here, we investigated the toxicity and molecular action mechanisms of bioengineered chitosan‑iron nanocomposites (BNCs) against Xoo using transcriptomic and proteomic approaches. The transcriptomic and proteomics analyses revealed molecular antibacterial mechanisms of BNCs against Xoo. Transcriptomic data revealed that various processes related to cell membrane biosynthesis, antioxidant stress, DNA damage, flagellar biosynthesis and transcriptional regulator were impaired upon BNCs exposure, which clearly showing the interaction of BNCs to Xoo pathogen. Similarly, proteomic profiling showed that BNCs treatment significantly altered the levels of functional proteins involved in the integral component of the cell membrane, catalase activity, oxidation-reduction process and metabolic process in Xoo, which is consistent with the results of the transcriptomic analysis. Overall, this study suggested that BNCs has great potential to serve as an eco-friendly, sustainable, and non-toxic alternative to traditional agrichemicals to control the BLB disease in rice.

Proteomic evaluation of nanotoxicity in aquatic organisms: A review

The alteration of organisms protein functions by engineered nanoparticles (ENPs) is dependent on the complex interplay between their inherent physicochemical properties (e.g., size, surface coating, shape) and environmental conditions (e.g., pH, organic matter). To date, there is increasing interest on the use of 'omics' approaches, such as proteomics, genomics, and others, to study ENPs-biomolecules interactions in aquatic organisms. However, although proteomics has recently been applied to investigate effects of ENPs and associated mechanisms in aquatic organisms, its use remain limited. Herein, proteomics techniques widely applied to investigate ENPs-protein interactions in aquatic organisms are reviewed. Data demonstrates that 2DE and mass spectrometry and/or their combination, thereof, are the most suitable techniques to elucidate ENPs-protein interactions. Furthermore, current status on ENPs and protein interactions, and possible mechanisms of nanotoxicity with emphasis on those that exert influence at protein expression levels, and key influencing factors on ENPs-proteins interactions are outlined. Most reported studies were done using synthetic media and essay protocols and had wide variability (not standardized); this may consequently limit data application in actual environmental systems. Therefore, there is a need for studies using realistic environmental concentrations of ENPs, and actual environmental matrixes (e.g., surface water) to aid better model development of ENPs-proteins interactions in aquatic systems.

Pesticide soil microbial toxicity: setting the scene for a new pesticide risk assessment for soil microorganisms (IUPAC Technical Report)

Pesticides constitute an integral part of modern agriculture. However, there are still concerns about their effects on non-target organisms. To address this the European Commission has imposed a stringent regulatory scheme for new pesticide compounds. Assessment of the aquatic toxicity of pesticides is based on a range of advanced tests. This does not apply to terrestrial ecosystems, where the toxicity of pesticides on soil microorganisms, is based on an outdated and crude test (N mineralization). This regulatory gap is reinforced by the recent methodological and standardization advances in soil microbial ecology. The inclusion of such standardized tools in a revised risk assessment scheme will enable the accurate estimation of the toxicity of pesticides on soil microorganisms and on associated ecosystem services. In this review we (i) summarize recent work in the assessment of the soil microbial toxicity of pesticides and point to ammonia-oxidizing microorganisms (AOM) and arbuscular mycorrhizal fungi (AMF) as most relevant bioindicator groups (ii) identify limitations in the experimental approaches used and propose mitigation solutions, (iii) identify scientific gaps and (iv) propose a new risk assessment procedure to assess the effects of pesticides on soil microorganisms.

Chronic high-dose silver nanoparticle exposure stimulates N2O emissions by constructing anaerobic micro-environment

Silver nanoparticles (Ag-NPs) were found to be responsible for nitrous oxide (N₂O) generation; however, the mechanism of Ag-NP induced N₂O production remains controversial and needs to be elucidated. In this study, chronic Ag-NP exposure experiments were conducted in five independent sequencing batch biofilm reactors to systematically assess the effects of Ag-NPs on N₂O emission. The results indicated that a low dose of Ag-NPs (< 1 mg/L) slightly suppressed N₂O generation by less than 22.99% compared with the no-Ag-NP control method. In contrast, a high dose (5 mg/L) of Ag-NPs stimulated N₂O emission by 67.54%. ICP-MS and SEM-EDS together revealed that high Ag-NP content accumulated on the biofilm surface when exposed to 5 mg/L Ag-NPs. N₂O and DO microelectrodes, as well as N₂O isotopic composition analyses, further demonstrated that the accumulated Ag-NPs construct the anaerobic zone in the biofilm, which is the primary factor for the stimulation of the nitrite reduction pathway to release N₂O. A metagenomic analysis further attributed the higher N₂O emissions under exposure to a high dose of Ag-NPs to the higher relative abundance of narB and nirK genes (i.e. 1.52- and 1.29-fold higher, respectively). These findings collectively suggest that chronic exposure to high doses of Ag-NPs could enhance N₂O emissions by forming anaerobic micro-environments in biofilms.

Impact and microbial mechanism of continuous nanoplastics exposure on the urban wastewater treatment process

Contamination by nanoplastics in urban water has aroused increasing concern. The impact of nanoplastic exposure on the wastewater treatment process in the long term is still unclear. This study investigated the effect of continuous nanoplastic exposure (R1:0, R2:10, R3:100, and R4:1000 μg/L) on the nitrification and denitrification processes for over 200 days in a sequencing batch reactor (SBR). The results revealed that nanoplastic exposure does not demonstrate significant inhibition of total nitrogen removal. The ammonia oxidation rate (19.24 ± 0.01 mgN/gMLVSS/h, p < 0.05) and denitrification rate (11.78 ± 0.11 mgN/ gMLVSS/h, p < 0.05) in R4 was significantly lower than the control (R1: 0 μg/L). The maximal reaction velocities of N₂O reduction (Vmax) were improved after long-term exposure to nanoplastics in high concentrations. The R3 demonstrated the highest Vmax value-six times higher than R4 and approximately 20 times higher than R1 and R2. The microbial structure largely varied with the exposure to nanoplastics, where the exposure to a high concentration largely suppressed the nitrifier and selectively enriched the denitrifier. The percentage of the top 20 genera of denitrifiers increased from 31.76% to 63.42%, and the nitrifiers decreased from an initial 12.40% to 2.83% for R4. The predominant genera were found to be Thauera, Azoarcus, and Defluviicoccus in R4 and R3 which indicated their tolerance to nanoplastics. The function prediction results indicated that the membrane transport function was significantly enhanced and the lipid metabolism function was significantly reduced in R4 as compared with the control (R1, p<0.05). This may be attributed to the adsorption of nanoplastics on bacteria. Observation under a scan electronic microscope demonstrated that the nanoplastics were firmly attached to the microbe surface and aggregated in activated sludge at high nanoplastics dosed reactor. These results deepen the understanding of the effect of nanoplastics on the urban wastewater treatment process and provide valuable information for the management of nanoplastic contamination in urban wastewater.

Unveiling changes of microbial community involved in N and P removal in constructed wetlands with exposing to silver nanoparticles

Constructed wetlands (CWs) are environmentally friendly engineered systems to purify wastewater, with low-cost and easy maintenance. However, it is not clear on responses of functional microbes for nitrogen (N) and phosphorus (P) biotransformation in CWs to silver nanoparticles (Ag NPs). The high throughput sequencings were employed to reveal microbial communities in vertical flow subsurface CWs with stable operation for 120 days. The results indicated that NH₄⁺-N, TN and TP removal of soil layer decreased by 43.56%, 15.7% and 22.7% under stress of Ag NPs. Microbial richness index and compositions were affected, and control wetland enriched Sulfurospirillum, Desulfarculaceae and Flavobacterium whereas CWs exposed to Ag NPs enriched Desulfosporosinus and Desulfurispora from LEfSe analysis. Moreover, after dosing Ag NPs, relative abundances of functional genes amoA and hao for nitrification, nirK and norB for denitrification and ppx and phoA/phoD for phosphorus conversions in upper soil were significantly downregulated. Inhibition on functional bacteria and genes of Ag NPs explained poor removal efficiencies of nitrogen and phosphorus pollutants in CWs. Our findings give an insight into ecological toxicity of Ag NPs on CWs with N and P bioconversions and provide the understanding of response of nitrifiers, denitrifies and PAOs.

A novel simultaneous coupling of memory photocatalysts and microbial communities for alternate removal of dimethyl phthalate and nitrate in water under light/dark cycles

Efficient and sustainable removal of both organic and inorganic pollutants from contaminated water is an important but difficult task. Here, a novel chemical-biological coupling concept, namely simultaneous coupling of memory photocatalysts and microbial communities (SCMPMC), is proposed for the first time that alternates the removal of organic and inorganic pollutants under successive light/dark cycles. We established this novel coupling system with WO₃/g-C₃N₄ memory photocatalysts and river sediment microbial communities, and applied it to alternately remove dimethyl phthalate (DMP) and nitrate under light/dark cycles. The performance of SCMPMC under the light/dark cycles (12/12 h) showed that ~84.90% of the DMP was removed mainly via robust photocatalytic oxidation during the light phase, and ~86.80% of the nitrate was removed via microbial reduction enhanced by photogenerated electrons stored in the WO₃/g-C₃N₄ memory photocatalysts during the dark phase within one cycle. The microbial communities were positively affected by adding WO₃/g-C₃N₄, as evidenced by increased enzyme activities, cellular antigen metabolism, and relative abundance of typical denitrifiers, including Proteobacteria and Bacteroidetes. These results will contribute to the development of promising decontamination methods and mechanisms to control water pollution driven by the natural day/night cycle.

Aquatic macrophytes mitigate the short-term negative effects of silver nanoparticles on denitrification and greenhouse gas emissions in riparian soils

Silver nanoparticles (AgNPs) are increasingly released into the aquatic environments because of their extensive use in consumer products and industrial applications. Some researchers have explored the toxicity of AgNPs to nitrogen (N) and carbon (C) cycles, but little is known about the role of aquatic plants in regulating the impact of AgNPs on these biogeochemical processes and related microorganisms. Here, two 90-day pot experiments were conducted to determine the effect of AgNPs on denitrification rates and greenhouse gas emissions in riparian wetland soils, with or without emergent plants (Typha minima Funck). As a comparison, the toxicity of equal concentration of AgNO₃ was also determined. The results showed that AgNPs released a great quantity of free Ag⁺, most of which was accumulated in soils, while little (less than 2%) was absorbed by plant shoots and roots. Both AgNPs and AgNO₃ could increase the soil redox potential and affect the growth and nutrient (N and phosphorus) uptake of plants. In soils with plants, there was no significant difference in denitrification rates and emissions of N₂O and CH₄ between control and AgNPs or AgNO₃ treatments at all tested concentrations (0.5, 1 and 10 mg kg^-1). However, low levels of AgNPs (0.5 mg kg^-1) significantly enhanced CO₂ emission throughout the experiment. Interestingly, in the absence of plants, a high dosage (10 mg kg^-1) of AgNPs generally inhibited soil denitrification and stimulated the emissions of CO₂, CH₄ and N₂O in the short-term. Meanwhile, the abundance of key denitrifying genes (nirS and nirK) was significantly increased by exposure to 10 mg kg^-1 AgNPs or AgNO₃. Our results suggest that emergent plants can alleviate the short-term negative effects of AgNPs on N and C cycling processes in wetland soils through different pathways.

Response of constructed wetland for wastewater treatment to graphene oxide: Perspectives on plant and microbe

The wide application of graphene oxide (GO) increases its release into environment with less known on environmental effects. This work investigated 120-day interaction between GO (500 and 5000 μg/L) and constructed wetlands (CWs) planted with Iris pseudacorus. CWs showed the effective retention for GO via mature biofilm but less biodegradation. GO significantly induced enzyme activities (urease, neutral phosphatase, and catalase), which was attributed to increases in ecological association and enzyme abundance. GO decreased microbial biomass on day 30, but it had no impacts on day 120. The microbial community showed gradual self-adaption with time due to protection of antioxidant defense system (L-ascorbate oxidase, superoxide reductase, and glutathione related enzyme). The antioxidant enzymes (superoxide dismutase and peroxidase) and lipid peroxidation of Iris pseudacorus were increased by GO, accompanied by reduction on chlorophyll biosynthesis. Overall, the separate effects of GO on micro-regions and individual bodies in CWs were obvious, but it was acceptable that variations in pollutant removal were not evident due to synergetic role of plant-substrate-microbe. Organic matter and phosphorus removals reached to above 93%, and ammonia and total nitrogen removals in GO groups were reduced by 7-8% and 9-13%, respectively.

Effect of metal and metal oxide engineered nano particles on nitrogen bio-conversion and its mechanism: A review

Metal and metal oxide engineered nano particles (MMO-ENPs) are widely applied in various industries due to their unique properties. Thus, many researches focused on the influence on nitrogen transformation processes by MMO-ENPs. This review focuses on the effect of MMO-ENPs on nitrogen fixation, nitrification, denitrification and Anammox. Firstly, based on most of the researches, it can be concluded MMO-ENPs have negative effect on nitrogen fixation, nitrification and denitrification while the MMO-ENPs have no promotion effect on Anammox. Then, the influence factors are discussed in detail, including MMO-ENPs dosage, MMO-ENPs kind and exposure time. Both the microbial morphology and population structure were altered by MMO-ENPs. Also, the mechanisms of MMO-ENPs affecting the nitrogen transformation are reviewed. The inhibition of key enzymes and functional genes, the promotion of reactive oxygen species (ROS) production, MMO-ENPs themselves and the suppression of electron transfer all contribute to the negative effect. Finally, the key points for future investigation are proposed that more attention should be attached to the effect on Anammox and the further mechanism in the future studies.

Response of extracellular polymeric substances and microbial community structures on resistance genes expression in wastewater treatment containing copper oxide nanoparticles and humic acid

The extracellular polymeric substances (EPS) and microbial community structures were investigated in wastewater treatment containing copper oxide nanoparticles (CuO NPs) (reactor R1) and CuO NPs and humic acid (HA) (reactor R2) using both sequencing batch bioreactors (SBRs), and their response on resistance genes expression was analyzed. The removal of influent chemical oxygen demands (COD) and NH₄⁺-N was moderately influenced under CuO NPs (5 mg/L) stress, while the function of HA (10 mg/L) was not reflected. However, the EPS production and microbial community were affected by the HA addition. The expression of different antibiotic resistance genes (ARGs), metal-resistance genes (MRGs), and intI1 was related to the primary compositions of polysaccharides and proteins in EPS and different microbial communities at the genus level. Furthermore, the expression of resistance genes was not stimulated under CuO NPs stress, and supplying HA was suggested to reduce their expression in wastewater treatment.

Stability and Microbial Toxicity of Silver Nanoparticles under Denitrifying Conditions

While the antibacterial effect of silver nanoparticles (AgNPs) on environmentally beneficial microbes has drawn considerable attention, the stability and microbial toxicity of AgNPs in a system where nitrate reduction is the dominant terminal electron-accepting process remain understudied. Here, we explore the impact of citrate-coated AgNPs (cit-AgNPs) on the growth and metabolism of two metal-sensitive and one nonsensitive bacterial strains under denitrifying conditions. Dose-response analysis revealed that in contrast to the bacteriostatic effect exhibited at 1 ppm, 5 ppm cit-AgNPs were bactericidal to the metal-sensitive strains. It was observed that the growth of the cells initiated Ag(I) formation, and the supplement of chloride (2.7 mM) to the cultures substantially mitigated the bactericidal capacity of cit-AgNPs, indicating that AgNP dissolution to ionic Ag(I) played a key role in AgNP toxicity. Abiotic experiments confirmed that nitrite, not nitrate, had the capacity to oxidize cit-AgNPs. Transcriptomic analysis revealed that (i) the gene encoding for membrane stress was upregulated proportionally to cit-AgNP concentrations; (ii) cit-AgNPs and Ag(I) at higher levels upregulated genes involved in oxidative stress and iron-sulfur clusters, whereas expressions of the genes responsible for electron transport, ATP synthesis, and denitrification were substantially repressed; (iii) the addition of chloride significantly altered the level of transcriptional profiles of all of the genes. These results not only provide evidence of abiotic AgNP oxidation by metabolic intermediate nitrogen species but also suggest that AgNPs and Ag(I) may induce differential toxicity modes to prokaryotes. Our findings reinforce the importance of evaluating the potential ecological toxicity and risks associated with the transformation of nanomaterials.

Biochar Mitigates N2O Emission of Microbial Denitrification through Modulating Carbon Metabolism and Allocation of Reducing Power

To elucidate the direct effects of biochar on denitrification metabolism at the cellular level, the global response of model denitrifying soil bacterium (Paracoccus denitrificans) to biochar addition was investigated by physiological, proteomic, and metabolomics analyses. The enhancement effect on denitrification was positively correlated with its pyrolysis temperatures (300-500 °C) and dosages (0.1-1%), regardless of precursors [corn straw (CS) or wheat straw). Moreover, the stimulating effect of CS biochar made at 500 °C (CS-500) was mainly attributed to the bulk particles rather than the released soluble compounds. Without direct contact with cells, bulk CS-500 particles might directly modulate the carbon metabolism by the adsorption of extracellular metabolites. Since carbon flux to storage was shifted to oxidative catabolism and growth assimilation, more share of the produced reducing power was used for nitrogen reduction. Meanwhile, except for nitrate reductase, both protein expressions and enzyme activities of nitrite reductase, nitric oxide reductase, and nitrous oxide reductase were up-regulated. Accordingly, the accumulation of N₂O was reduced by 98% due to the optimized electron distribution among denitrifying enzymes. Eventually, the growth rate of Pc. denitrificans enhanced because of the improved energy utilization efficiency. These results updated the regulation mechanism of biochar on denitrification metabolism and N₂O mitigation.

Molecular Mechanisms of Nanomaterial-Bacterial Interactions Revealed by Omics-The Role of Nanomaterial Effect Level

Nanotechnology is employed across a wide range of antibacterial applications in clinical settings, food, pharmaceutical and textile industries, water treatment and consumer goods. Depending on type and concentration, engineered nanomaterials (ENMs) can also benefit bacteria in myriad contexts including within the human body, in biotechnology, environmental bioremediation, wastewater treatment, and agriculture. However, to realize the full potential of nanotechnology across broad applications, it is necessary to understand conditions and mechanisms of detrimental or beneficial effects of ENMs to bacteria. To study ENM effects, bacterial population growth or viability are commonly assessed. However, such endpoints alone may be insufficiently sensitive to fully probe ENM effects on bacterial physiology. To reveal more thoroughly how bacteria respond to ENMs, molecular-level omics methods such as transcriptomics, proteomics, and metabolomics are required. Because omics methods are increasingly utilized, a body of literature exists from which to synthesize state-of-the-art knowledge. Here we review relevant literature regarding ENM impacts on bacterial cellular pathways obtained by transcriptomic, proteomic, and metabolomic analyses across three growth and viability effect levels: inhibitory, sub-inhibitory or stimulatory. As indicated by our analysis, a wider range of pathways are affected in bacteria at sub-inhibitory vs. inhibitory ENM effect levels, underscoring the importance of ENM exposure concentration in elucidating ENM mechanisms of action and interpreting omics results. In addition, challenges and future research directions of applying omics approaches in studying bacterial-ENM interactions are discussed.

Effects of heavy metals and metal (oxide) nanoparticles on enhanced biological phosphorus removal

With the rapid growth of economics and nanotechnology, a significant portion of the anthropogenic emissions of heavy metals and nanoparticles (NPs) enters wastewater streams and discharges to wastewater treatment plants, thereby potentially posing a risk to the bacteria that facilitate the successful operation of the enhanced biological phosphorus (P) removal (EBPR) process. Although some efforts have been made to obtain detailed insights into the effects of heavy metals and metal (oxide) nanoparticles [Me(O)NPs], many unanswered questions remain. One question is whether the toxicity of Me(O)NPs originates from the released metal ions. This review aims to holistically evaluate the effects of heavy metals and Me(O)NPs. The interactions among extracellular polymeric substances, P, and heavy metals [Me(O)NPs] are presented and discussed for the first time. The potential mechanisms of the toxicity of heavy metals [Me(O)NPs] are summarized. Additionally, mathematical models of the toxicity and removal of P, heavy metals, and Me(O)NPs are overviewed. Finally, knowledge gaps and opportunities for further study are discussed to pave the way for fully understanding the inhibition of heavy metals [Me(O)NPs] and for reducing their inhibitory effect to maximize the reliability of the EBPR process.

Proteomics reveals surface electrical property-dependent toxic mechanisms of silver nanoparticles in Chlorella vulgaris

Silver nanoparticles (AgNPs) are known to exert adverse effects on both humans and aquatic organisms; however, the toxic mechanisms underlying these effects remain unclear. In this study, we investigated the toxic mechanisms of various AgNPs with different surface electrical properties in the freshwater algae Chlorella vulgaris using an advanced proteomics approach with Data-Independent Acquisition. Citrate-coated AgNPs (Cit-AgNPs) and polyethyleneimine-coated AgNPs (PEI-AgNPs) were selected as representatives of negatively and positively charged nanoparticles, respectively. Our results demonstrated that the AgNPs exhibited surface electrical property-dependent effects on the proteomic profile of C. vulgaris. In particular, the negatively charged Cit-AgNPs specifically regulated mitochondrial function-related proteins, resulting in the disruption of several associated metabolic pathways, such as those related to energy metabolism, oxidative phosphorylation, and amino acid synthesis. In contrast, the positively charged PEI-AgNPs primarily targeted ribosome function-related proteins and interrupted pathways of protein synthesis and DNA genetic information transmission. In addition, Ag⁺ ions released from the AgNPs had a significant influence on protein regulation and the induction of cellular stress. Collectively, our findings provide new insight into the surface electrical property-dependent proteomic effects of AgNPs on C. vulgaris and should improve our understanding of the toxic mechanisms of AgNPs in freshwater algae.

The effects of silver nanoparticles on the microbial nitrogen cycle: a review of the known risks

The nitrogen cycle is an integral biogeochemical function for maintaining healthy environments. Nitrogen is a key nutrient that must be continuously replenished through recycling mechanisms to sustain ecosystems, disruption to which can result in compromised ecosystem functioning. Certain stages in the microbial conversion of nitrogen compounds are performed by a limited range of micro-organisms making these key functional species in ecosystems. The growing industrial use of silver nanoparticles (AgNPs) potentially poses significant risks for microbial nitrogen cycling species. AgNPs possess potent antimicrobial properties and are expected to reach a range of natural environments through several routes of exposure. Certain functional nitrogen cycling microbes have been shown to be highly susceptible to AgNP toxicity. The current literature indicates that AgNPs can negatively affect certain nitrogen fixing, nitrifying and denitrifying microbes in vitro. In vivo studies investigating the effect of AgNPs on nitrogen cycling microbial communities and nitrogen transformation rates in soil, sediment and sludge environments have also indicated disruption of these functional processes. This review provides a comprehensive description of the current state of knowledge regarding the toxicity of AgNPs to nitrogen cycling communities. The aim of the review is to highlight the most susceptible stages in the nitrogen cycle and the implications for the affected ecosystems.

Transcriptional and metabolic response against hydroxyethane-(1,1-bisphosphonic acid) on bacterial denitrification by a halophilic Pannonibacter sp. strain DN

Biological denitrification is an environmentally sound pathway for the elimination of nitrogen pollution in wastewater treatment. Extreme environmental conditions, such as the co-existence of toxic organic pollutants, can affect biological denitrification. However, the potential underlying mechanism remains largely unexplored. Herein, the effect of a model pollutant, hydroxyethane-(1,1-bisphosphonic acid) (HEDP), a widely applied and consumed bisphosphonate, on microbial denitrification was investigated by exploring the metabolic and transcriptional responses of an isolated denitrifier, Pannonibacter sp. strain DN. Results showed that nitrate removal efficiency decreased from 85% to 50% with an increase in HEDP concentration from 0 to 3.5 mM, leading to nitrite accumulation of 204 mg L^-1 in 3.5 mM HEDP. This result was due to the lower bacterial population count and reduction in the live cell percentage. Further investigation revealed that HEDP caused a decrease in membrane potential from 0.080 ± 0.005 to 0.020 ± 0.002 with the increase in HEDP from 0 to 3.5 mM. This hindered electron transfer, which is required for nitrate transformation into nitrogen gas. Moreover, transcriptional profiling indicated that HEDP enhanced the genes involved in ROS (O₂^-) scavenging, thus protecting cells against oxidative stress damage. However, the suppression of genes responsible for the production of NADH/FADH₂ in tricarboxylic acid cycle (TCA), NADH catalyzation (NADH dehydrogenase) in (electron transport chain) ETC system and denitrifying genes, especially nor and nir, in response to 2.5 mM HEDP were identified as the key factor inhibiting transfer of electron from TCA cycle to denitrifying enzymes through ETC system.

Effects of silver nanoparticles on coupled nitrification-denitrification in suspended sediments

The effects of varying concentrations of Ag NPs on coupled nitrification and denitrification (CND) in two suspended sediments (SPSs) sizes were investigated using isotopic tracer method. In general, 0.5 and 5 mg/L Ag NPs had less effect on CND, while 2 and 10 mg/L Ag NPs exhibited the improvement and inhibition effect, respectively. The CND improvement by 2 mg/L NPs was mainly due to the enhanced nitrifying and denitrifying enzyme activity. However, 10 mg/L Ag NPs inhibited NH₄⁺ oxidation by directly reducing the AMO activity and AOB abundance. The inhibition on NAR and NIR activity and their encoding narG and nirK gene abundance further inhibited NO₃^- and NO₂^- reduction, leading to a dramatic decrease in the ¹⁵N-N₂ production. The above inhibition effects were attributed to the nano-effects of Ag NPs, which led to the excessive ROS amount and the decreased T-AOC level in microbial systems. But the connection between nitrification and denitrification was not broken after Ag NPs exposure. Moreover, the results indicated that N-cycling in clay and silt-type SPS systems could be more sensitive than sand-type SPS systems to NP exposure. The findings provide a basis for evaluating the environmental risks of Ag NPs in water-sediment systems.

Transcriptome sequencing analysis reveals silver nanoparticles antifungal molecular mechanism of the soil fungi Fusarium solani species complex

Silver nanoparticles (AgNPs) have been widely used in various fields due to their antimicrobial activities. However, the antimicrobial mechanisms of AgNPs against fungi, especially on transcriptional level, are still unclear. In this study, the inhibitory property of AgNPs against Fusarium solani species complex was investigated. Transmission electron microscopes were used to observe the alterations in morphology and cellular structure of fungal hyphae treated with AgNPs. Disturbances in the cell walls and membranes, as well as empty space in the cytoplasm were observed. The transcriptome sequencing of F. solani species complex mycelia was performed using the Illumina NextSeq 500 ribonucleic acid sequencing (RNA-Seq) platform. In the RNA-Seq study, AgNPs treatment resulted in 2503 differentially expressed genes (DEGs). Gene Ontology (GO) analysis revealed that the DEGs were mainly involved in 6 different terms. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis also revealed that energy and substance metabolism, signal transduction and genetic information processing were the most highly enriched pathways for these DEGs. In addition, RNA-seq results were validated by quantitative polymerase chain reactions (qPCRs). Our findings enhanced the understanding of the antifungal activities of AgNPs and the underlying molecular mechanisms, and provided a new perspective for investigating this novel antifungal agent.

Effects of Ag NPs on denitrification in suspended sediments via inhibiting microbial electron behaviors

The wide use of silver nanoparticles (Ag NPs) inevitably leads to their increasing emission into aquatic environments. However, before their final deposition into sediments, the ecological effects of Ag NPs in suspended sediment (SPS) systems have not received much attention. Herein, we investigated the influences of Ag NPs on denitrification in SPS systems, and explored the potential toxicity mechanism through microbial metabolism (electron behaviors) and isotope tracing (added ¹⁵NO₃^-). After exposure to 10 mg/L Ag NPs, electron generation, transport and consumption during denitrification were clearly inhibited, which led to a decrease in the SPS denitrification rate. Specifically, the generation of NADH (electron donor) was significantly decreased to 59.92-86.47% with the Ag NPs treatments by affecting the degradation of glucose, one of the major reasons for the decreased denitrification. It also indicated that Ag NPs could affect nitrogen metabolism by influencing carbon metabolism. In addition, ETSA was clearly inhibited by the affected electron transfer and reception during denitrification; that was the most direct way in the microbial electron transport chain to affect the SPS denitrification rate. Furthermore, the particle size and concentration of SPS affected the toxicity of Ag NPs. The denitrification process in SPS systems with a smaller particle size and lower particle concentration was easily affected by Ag NPs, suggesting that SPS systems dominated by clay (particle size < 3.9 μm) or that less turbulence (having low SPS concentration) might be at greater risk factor when exposed to NPs. Thus, it is important to understand the risks of pollutants, such as Ag NPs, to biogeochemical cycles and ecosystem function in SPS systems.

Silver nanoparticles inhibit denitrification by altering the viability and metabolic activity of Pseudomonas stutzeri

The environmental toxicity of silver nanoparticles (AgNPs) is currently the focus of intensive research. However, the mechanisms underlying the cytotoxic effects of AgNPs on denitrifying microbes have yet to be explicitly demonstrated. Herein, Pseudomonas stutzeri was used to explore the effects of AgNPs on denitrification and cytotoxicity. The denitrification efficiency decreased from 94.91% in the AgNP-free treatment to 87.66%, 60.51% and 36.10% with treatments of 3.125, 6.25 and 12.5 mg/L AgNPs, respectively. The inhibition and delay in the denitrification process from treatment with AgNPs likely occurred through alteration of the viability and metabolic activity of P. stutzeri. Flow cytometry analysis indicated that the early apoptotic rates of P. stutzeri were 8.72%, 30.60%, and 48.60% with treatments of 3.125, 6.25, and 12.5 mg/L AgNPs, respectively. Results for scanning electron microscope (SEM) imaging, ζ-potential analysis, lactate dehydrogenase (LDH) release and malondialdehyde (MDA) production assays demonstrated adsorption of AgNPs on the cell surface, which altered membrane potential and mediated lipid peroxidation; these events eventually resulted in the aberration of cell morphology. Transmission electron microscopy (TEM) images and measurements of Ag content distribution by ICP-MS indicated that AgNPs were easily internalized by P. stutzeri, which increased the accumulation of reactive oxygen species (ROS). Furthermore, the presence of AgNPs also greatly inhibited expression of genes napA, nirS, cnorB, and nosZ, thereby reducing the activities of nitrate reductase (NAR) and nitrite reductase (NIR). These findings will help further our understanding of the mechanism underlying AgNPs cytotoxicity, and provide the means to evaluate the negative effect of nanoparticles in the environment.

Silver nanoparticles in dye effluent treatment: A review on synthesis, treatment methods, mechanisms, photocatalytic degradation, toxic effects and mitigation of toxicity

The current scenario of water resources shows the dominance of pollution caused by the draining of industrial effluents. The polluted waters have resulted in severe health and environmental hazards urging for a suitable alternative to resolve the implications. Various physical and chemical treatment steps currently in use for dye effluent treatment are more time consuming, cost-intensive, and less effective. Alternatively, nanoparticles due to their excellent surface properties and chemical reactivity have emerged as a better solution for dye removal and degradation. In this regard, the potential of silver nanoparticles in dye effluent treatment was greatly explored. Efforts were taken to unravel the kinetics and statistical optimization of the treatment conditions for the efficient removal of dyes. In addition, the role of silver nanocomposites has also experimented with colossal success. On the contrary, studies have also recognized the mechanisms of silver nanoparticle-mediated toxicity even at deficient concentrations and their deleterious biological effects when present in treated water. Hence, the fate of the silver nanoparticles released into the treated water and sludge, contaminating the soil, aquatic environment, and underground water is of significant concern. This review summarizes the current state of knowledge regarding the use of silver nanoparticles and silver-based nanocomposites in effluent treatment and comprehends the recent research on mitigation of silver nanoparticle-induced toxicity.

Underlying Promotion Mechanism of High Concentration of Silver Nanoparticles on Anammox Process

Silver nanoparticles (AgNPs) are largely discharged into sewers and mostly accumulated in the sediments and sludge. The toxicity of AgNPs to environmental microorganisms has attracted great attention. However, the effect of AgNPs on anaerobic ammonium-oxidizing (anammox) granules remains unknown. Here we present the underlying promotion mechanism of AgNPs on anammox granules from a morphological and molecular biology perspective. Our results demonstrate a positive effect of AgNPs on the proliferation of anammox bacteria. AgNPs resulted in a change in the three-dimensional structure of anammox granules and led to larger pore size and higher porosity. In addition, the diffusion capacity of the substrate and metal ions was enhanced. Furthermore, the expression of anammox-related enzymes, such as nitrite oxidoreductase (NirS), hydrazine dehydrogenase (Hdh), and hydrazine synthase (HZS), was upregulated. Therefore, the growth rate and the nitrogen removal performance of the anammox granules were improved. Our findings clarify the underlying mechanism of AgNPs on anammox granules and provide a promising method for the treatment of AgNPs-rich wastewater.

Changes in protein patterns of Staphylococcus aureus and Escherichia coli by silver nanoparticles capped with poly (4-styrenesulfonic acid-co-maleic acid) polymer

Background

While silver nanoparticles (AgNPs) are increasingly attractive as an antibacterial agent in many applications, the effect of AgNPs on bacterial protein profiles, especially AgNPs stabilized by polymeric molecules, is not well understood.

Objectives

To investigate the changes in bacterial protein patterns by AgNPs capped with poly (4-styrenesulfonic acid-co-maleic acid) (AgNPs-PSSMA) polymer toward Staphylococcus aureus ATCC 25923 and Escherichia coli ATCC 25922.

Methods

The growth of bacteria after incubated with AgNPs-PSSMA for different time intervals was determined by optical density at 600 nm. Their protein patterns were observed using sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), and the proteomic analysis of extracted proteins was determined by liquid chromatography-tandem mass spectrometry (LC–MS/MS).

Results

AgNPs-PSSMA was able to inhibit the growth of both S. aureus and E. coli cells. The treated bacterial cells expressed more proteins than the untreated cells as seen from SDS-PAGE study. Nanosilver (NS) caused the upregulation of metabolic gene, waaA, in S. aureus cells. For E. coli cells, the upregulated proteins were metabolic genes (srlB, fliE, murD) and other genes dealt with DNA replication (dinG), DNA–RNA transcription (yrdD), RNA– protein translation (rplD), molecular transport (sapF), and signal transduction (tdcF).

Conclusions

The antibacterial effect of AgNPs-PSSMA may arise by changing the bacterial proteins and thus interfering with the normal cell function.

Characterization and mechanism of the effects of Mg-Fe layered double hydroxide nanoparticles on a marine bacterium: new insights from genomic and transcriptional analyses

BACKGROUND

Layered double hydroxides (LDHs) have received widespread attention for their potential applications in catalysis, polymer nanocomposites, pharmaceuticals, and sensors. Here, the mechanism underlying the physiological effects of Mg-Fe layered double hydroxide nanoparticles on the marine bacterial species Arthrobacter oxidans KQ11 was investigated.

RESULTS

Increased yields of marine dextranase (Aodex) were obtained by exposing A. oxidans KQ11 to Mg-Fe layered double hydroxide nanoparticles (Mg-Fe-LDH NPs). Furthermore, the potential effects of Mg-Fe-LDH NPs on bacterial growth and Aodex production were preliminarily investigated. A. oxidans KQ11 growth was not affected by exposure to the Mg-Fe-LDH NPs. In contrast, a U-shaped trend of Aodex production was observed after exposure to NPs at a concentration of 10 μg/L-100 mg/L, which was due to competition between Mg-Fe-LDH NP adsorption on Aodex and the promotion of Aodex expression by the NPs. The mechanism underling the effects of Mg-Fe-LDH NPs on A. oxidans KQ11 was investigated using a combination of physiological characterization, genomics, and transcriptomics. Exposure to 100 mg/L of Mg-Fe-LDH NPs led to NP adsorption onto Aodex, increased expression of Aodex, and generation of a new Shine-Dalgarno sequence (GGGAG) and sRNAs that both influenced the expression of Aodex. Moreover, the expressions of transcripts related to ferric iron metabolic functions were significantly influenced by treatment.

CONCLUSIONS

These results provide valuable information for further investigation of the A. oxidans KQ11 response to Mg-Fe-LDH NPs and will aid in achieving improved marine dextranase production, and even improve such activities in other marine microorganisms.

Low-level free nitrous acid efficiently inhibits the conjugative transfer of antibiotic resistance by altering intracellular ions and disabling transfer apparatus

Recently, the dissemination of antibiotic resistance genes (ARGs) via plasmid-mediated conjugation has been reported to be facilitated by a series of contaminants. This has highlighted potential challenges to the effective control of this principal mode of horizontal transfer. In the present study, we found that low levels (<0.02 mgN/L) of free nitrous acid (FNA) remarkably inhibited (over 90%) the conjugative transfer of plasmid RP4, a model broad-host-range plasmid, between Escherichia coli. The antimicrobial role of FNA at the applied dosages was firstly ruled out, since no dramatic reductions in viabilities of donor or recipient were observed. Instead, FNA appeared to reduce the available intracellular free Mg²⁺, which was confirmed to be triggered by the liberation of intracellular Fe²⁺. These alterations in intracellular Mg²⁺ and Fe²⁺ concentrations were found to significantly limit the available energy for conjugative transfer through suppression of glycolysis by decreasing the activities of glycogen phosphorylase and glyceraldehyde-3-phosphate dehydrogenase and also by diverting the glycolytic flux into the pentose phosphate pathway via activation of glucose-6-phosphate dehydrogenase towards the generation of NADPH rather than ATP. Moreover, RP4-encoding genes responsible for DNA transfer and replication (traI, traJ and trfAp), coupling (traG) and mating pair formation (traF and trbBp) were all significantly down-regulated after FNA treatment, indicating that the transfer apparatus required for plasmid processing and delivery was deactivated. By validating the inhibitory effects of FNA on conjugation in real wastewater, this study highlights a promising method for controlling the dissemination of ARGs in systems such as wastewater treatment plants.

Incidence and persistence of silver nanoparticles throughout the wastewater treatment process

While the predicted or observed concentrations of Ag NPs in wastewater treatment plants (WWTPs) have ranged from μg/L to ng/L, there is still uncertainty with regards to the realistic concentration range of Ag NPs in WWTPs. In addition, the persistence, removal, and size of Ag NPs throughout WWTP process is also not well investigated, particularly in real operating conditions. In this study, the incidence and persistence of Ag NPs in the wastewater process were studied by using single particle inductively coupled plasma mass spectrometry (sp-ICP-MS). The incidence of Ag NPs was determined in samples collected at the influent and effluent of the conventional process, as well as reclaimed and backwash waters of the ultrafiltration (UF) system in a WWTP (Santa Barbara, CA), showing a concentration of 13.5, 3.2, 0.5 and 9.8 ng/L, respectively, with relative standard deviations (RSDs) < 5%. Total Ag concentration (Ag NP and Ag⁺) ranged from 40 to 70 ng/L, in line with lower predicted values. Most of the Ag NPs detected were below 100 nm, with a few above 100 nm in the conventional effluent. Biological and physical processes in the secondary treatment removed 76.3% of the colloidal Ag fraction, while with the tertiary treatment (UF) the WWTP achieved a removal of 96.3% of the colloidal fraction. Persistence of Ag NPs in various water matrixes, including a synthetic wastewater (SWW), was determined by spiking 300 ng/L of Ag NPs (40 nm) and monitoring the concentrations and size change for 15 days. The persistence of Ag NPs in suspension was Influent > Effluent > Reclaimed > SWW. Partial dissolution of NPs in all waters was observed from time 0 h. Although the current concentrations in the outlet flows from WWTP (effluent and reclaimed waters) were low, the presence of small and stable Ag NPs may raise ecotoxicological concerns via bioaccumulation.

Effects of nano-sized MnO2 on methanogenic propionate and butyrate degradation in anaerobic digestion

The responses of methanogenic propionate and butyrate degradation to nano-sized MnO₂ exposure were explored. The results showed that supplementation with 50 mg/g volatile suspended solids (VSS) of nano-sized MnO₂ significantly enhanced the production rate of CH₄ in propionate and butyrate degradation by 25.6% and 21.7%, respectively. The stimulatory effects most likely resulted from enhancements in the microbial metabolic activity based on the observed increases in the extracellular polymeric substance (EPS) secretion and activity of the electron transport system. In contrast, the CH₄ yields obtained were irreversibly inhibited by the presence of 400 mg/g VSS of nano-sized MnO₂, in which just 62.8% and 6.5%, respectively, of the yield obtained from the control. Further investigations indicated that supplementation by nano-sized MnO₂ could cause oxidative stress in microbial cells, resulting in the release of reactive oxygen species (ROS). Compared with that of the control, the amount of intracellular ROS generated in the systems increased by 28.3% (fed with propionate) and 42.5% (fed with butyrate), corresponding to approximately 43.9% and 64.8% losses in cell viability, respectively; thus, ROS generation was suggested to be the main factor responsible for the inhibitory effects of nano-sized MnO₂ on methanogenic propionate and butyrate degradation.

The revolution of performance, sludge characteristics and microbial community of anammox biogranules under long-term NiO NPs exposure

Given the increasing applications of NiO nanoparticles (NPs) in battery products, the potential effects of NiO NPs on anaerobic ammonium oxidation (anammox) systems were studied for the first time. The results showed that the anammox system performance obviously differed under the stresses of different NiO NPs concentrations. After the withdrawal of NiO NPs, the nitrogen removal performance of the anammox reactor returned to nearly that of the initial phase within 35 days. Compared with 0 mg L^-1 NiO NPs, the specific anammox activity first increased and then decreased to the minimum value of 116.8 ± 13.8 mg TN g^-1 VSS d^-1 at 60 mg L^-1 NiO NPs. The variations in the heme c contents and extracellular polymeric substance amounts were similar to the variations in the specific anammox activity throughout the whole experiment. Additionally, the relative abundance of the dominant bacteria (Candidatus kuenenia) increased from 20.44% at 60 mg L^-1 NiO NPs to 23.14% at the end of the last phase. Thus, the potential effects of NiO NPs on anammox systems should be a cause for great concern.

Effects of ionic strength on physicochemical properties and toxicity of silver nanoparticles

In the environment, silver nanoparticles (AgNPs) undergo a number of potential transformations, such as aggregation, dissolution, and redox reactions. However, the transformation in ionic strength condition, as well as their related toxicity was not quite clear, especially in the in vivo system. In the present study, we comprehensively evaluated three different characteristics (ddH₂O, EPA water and K⁺ medium (KM)) mediated changes in the physical morphology of AgNPs and the alteration of the toxicity to Caenorhabditis elegans (C. elegans). Our results showed besides the changes of AgNPs behavior such as the transformation of morphological, with the transmission electron microscopy we found for the first time that smaller nanoparticles (<5 nm) appeared around the pristine AgNPs after incubation in EPA or KM for 5 days. Together with these changes, the toxicity of AgNPs to C. elegans changed significantly, showing that a higher ionic strength medium resulted in greater toxicity to C. elegans, as measured by germ cell apoptosis, brood size and lifespan. More importantly, our results indicated that the higher toxicity of AgNPs to C. elegans reproduction was probably related to the appearance of the smaller-size AgNPs in higher ionic strength media. These findings highlight that toxicity assessments for the release of nanomaterial to the environment need to be improved to assess environmental safety more accurately.

Chitosan-Stabilized Ag Nanoparticles with Superior Biocompatibility and Their Synergistic Antibacterial Effect in Mixtures with Essential Oils

Silver nanoparticles (AgNPs) are considered a promising alternative to the use of antibiotics in fighting multidrug-resistant pathogens. However, their use in medical application is hindered by the public concern regarding the toxicity of metallic nanoparticles. In this study, rationally designed AgNP were produced, in order to balance the antibacterial activity and toxicity. A facile, environmentally friendly synthesis was used for the electrochemical fabrication of AgNPs. Chitosan was employed as the capping agent, both for the stabilization and to improve the biocompatibility. Size, morphology, composition, capping layer, and stability of the synthesized nanoparticles were characterized. The in vitro biocompatibility and antimicrobial activities of AgNPs against common Gram-negative and Gram-positive bacteria were evaluated. The results revealed that chitosan-stabilized AgNPs were nontoxic to normal fibroblasts, even at high concentrations, compared to bare nanoparticles, while significant antibacterial activity was recorded. The silver colloidal dispersion was further mixed with essential oils (EO) to increase the biological activity. Synergistic effects at some AgNP–EO ratios were observed, as demonstrated by the fractionary inhibitory concentration values. Our results reveal that the synergistic action of both polymer-stabilized AgNPs and essential oils could provide a significant efficiency against a large variety of microorganisms, with minimal side effects.

Bare and nonionic surfactant-functionalized praseodymium oxide nanoparticles: Toxicological studies

The applications of praseodymium oxide (Pr₆O₁₁) nanomaterials in catalysis, oxygen storage materials, and optical devices are the emergent areas that possess an urgent requirement for the toxicological evaluation of these nanomaterials to determine their impact on the ecology. In the present work, we have employed a multiassay approach for the toxicological profiling of bare and nonionic surface-modulated Pr₆O₁₁ nanoparticles (NPs). The contemporary analysis in this work has presented a great prospect to develop efficient indicators and inspect the toxic nature of bare and functionalized Pr₆O₁₁ NPs. The effect of Pr₆O₁₁ NPs was analyzed on germination parameters by the wheat seed germination assay and on algal growth by the paper disc approach. The influence of Pr₆O₁₁ NPs on the percentage viability of four different types of bacteria, namely, Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa, and Salmonella typhi, was investigated. The substantial effect of different concentrations of Pr₆O₁₁ NPs on Allium cepa was investigated at the genomic level by using the chromosomal aberration assay. The functionalized NPs exhibited 41.05%-400% higher biocompatibility by the wheat seed germination assay and 27.1%-47.3% by the A. cepa chromosomal aberration assay than the bare NPs. In algal growth assay and antibacterial activity testing, biocompatibility of the developed functionalized NPs enhanced by 23.1%-37.1% and 10%-70.6%, respectively. The current work evaluated the toxicity of the NPs and measured the competence of the obtained data to characterize possibilities of probable threats, prominence of data requirement, and breaches that must be filled to diminish the ambiguities about the safe use of Pr₆O₁₁ NPs.

Discrepant effects of metal and metal oxide nanoparticles on anammox sludge properties: A comparison between Cu and CuO nanoparticles

Metal and metal oxide nanoparticles (NPs) show differences in antimicrobial activity due to different chemical and physical properties. Using copper as a representative example, this study compared the NP effects on anaerobic ammonium oxidation (anammox) bacteria in wastewater treatment. Long-term exposure to 5 mgCu L^-1 CuNPs reduced the physiological activity and abundance of anammox bacteria, thereby causing deterioration of reactor performance. However, anammox granules exhibited stronger resistance and resilience to perturbation by 1-160 mgCu L^-1 CuONPs, and no adverse effects on performance were observed. Moreover, the level of Cu(II) released from NPs in the influent exhibited good correlations with variations of the community structure and sludge properties. Therefore, the effects of Cu-based NPs on anammox sludge properties are dependent on their forms and levels, and their discrepant effects are partially attributed to their ability to release ionic copper.

Paracoccus versutus KS293 adaptation to aerobic and anaerobic denitrification: Insights from nitrogen removal, functional gene abundance, and proteomic profiling analysis

A novel strain KS293 exhibiting excellent aerobic and anaerobic denitrification performance was isolated and identified as Paracoccus versutus KS293. Nitrate nitrogen and total organic carbon could be effectively removed by P. versutus KS293 without nitrite accumulation, whilst 82% and 85% of total nitrogen was converted into gaseous products under aerobic and anaerobic conditions (P > .05), respectively. Based on the ratio of anaerobic to aerobic, relative abundance values were increased 1.41, 1.45, and 2.31 folds for nirS, nosZ, and narG, respectively. A comparison of the two-dimensional gel electrophoresis and principal component analysis showed significant differences in proteomic profiles between aerobic and anaerobic conditions. In total, 78 proteins that displayed fluctuations in relative expression were observed. 10 proteins including nitrate reductase, maintenance of cell membrane (TolA), and RNA polymerase-binding transcription factor (DksA) were differentially expressed. These findings demonstrated that P. versutus KS293 was effective for nitrogen removal under aerobic or anaerobic conditions.