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For: Heine A, Luz JG, Wong CH, Wilson IA. Analysis of the class I aldolase binding site architecture based on the crystal structure of 2-deoxyribose-5-phosphate aldolase at 0.99A resolution. J Mol Biol 2004;343:1019-34. [PMID: 15476818 DOI: 10.1016/j.jmb.2004.08.066] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2004] [Revised: 08/18/2004] [Accepted: 08/20/2004] [Indexed: 11/17/2022]
Number Cited by Other Article(s)
1
Naik K, Jeevani K, Bar K, Saravanan T. Enantiodivergent Synthesis of Both (R)- and (S)-Heteroaryl Aldols by Rationally Engineered Aldolases. J Org Chem 2025;90:3243-3251. [PMID: 39835746 DOI: 10.1021/acs.joc.4c02819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2025]
2
Dwyer ME, Sutter M, Kerfeld CA. Characterization of a widespread sugar phosphate-processing bacterial microcompartment. Commun Biol 2024;7:1562. [PMID: 39580597 PMCID: PMC11585597 DOI: 10.1038/s42003-024-07287-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2024] [Accepted: 11/18/2024] [Indexed: 11/25/2024]  Open
3
Kifle BA, Sime AM, Gemeda MT, Woldesemayat AA. Shotgun metagenomic insights into secondary metabolite biosynthetic gene clusters reveal taxonomic and functional profiles of microbiomes in natural farmland soil. Sci Rep 2024;14:15096. [PMID: 38956049 PMCID: PMC11220033 DOI: 10.1038/s41598-024-63254-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2023] [Accepted: 05/27/2024] [Indexed: 07/04/2024]  Open
4
Brown RO, Demapan D, Cui Q. Complete Computational Reaction Mechanism for Foldamer-Catalyzed Aldol Condensation. ACS Catal 2024;14:7624-7638. [PMID: 39584021 PMCID: PMC11581291 DOI: 10.1021/acscatal.4c00937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2024]
5
Corbella M, Pinto GP, Kamerlin SCL. Loop dynamics and the evolution of enzyme activity. Nat Rev Chem 2023;7:536-547. [PMID: 37225920 DOI: 10.1038/s41570-023-00495-w] [Citation(s) in RCA: 52] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/06/2023] [Indexed: 05/26/2023]
6
Hindges J, Döbber J, Hayes MR, Classen T, Pohl M, Pietruszka J. Covalently Immobilized 2‐Deoxyribose‐5‐phosphate Aldolase (DERA) for Biocatalysis in Flow: Utilization of the 3‐Hydroxyaldehyde Intermediate in Reaction Cascades. ChemCatChem 2022. [DOI: 10.1002/cctc.202200390] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
7
Kunzendorf A, Xu G, van der Velde JJH, Rozeboom H, Thunnissen AMWH, Poelarends GJ. Unlocking Asymmetric Michael Additions in an Archetypical Class I Aldolase by Directed Evolution. ACS Catal 2021;11:13236-13243. [PMID: 34765282 PMCID: PMC8576802 DOI: 10.1021/acscatal.1c03911] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Revised: 10/02/2021] [Indexed: 01/06/2023]
8
Current state of and need for enzyme engineering of 2-deoxy-D-ribose 5-phosphate aldolases and its impact. Appl Microbiol Biotechnol 2021;105:6215-6228. [PMID: 34410440 PMCID: PMC8403123 DOI: 10.1007/s00253-021-11462-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 07/13/2021] [Accepted: 07/19/2021] [Indexed: 01/28/2023]
9
Pfeiffer M, Nidetzky B. Reverse C-glycosidase reaction provides C-nucleotide building blocks of xenobiotic nucleic acids. Nat Commun 2020;11:6270. [PMID: 33293530 PMCID: PMC7722734 DOI: 10.1038/s41467-020-20035-0] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Accepted: 11/09/2020] [Indexed: 12/21/2022]  Open
10
Voutilainen S, Heinonen M, Andberg M, Jokinen E, Maaheimo H, Pääkkönen J, Hakulinen N, Rouvinen J, Lähdesmäki H, Kaski S, Rousu J, Penttilä M, Koivula A. Substrate specificity of 2-deoxy-D-ribose 5-phosphate aldolase (DERA) assessed by different protein engineering and machine learning methods. Appl Microbiol Biotechnol 2020;104:10515-10529. [PMID: 33147349 PMCID: PMC7671976 DOI: 10.1007/s00253-020-10960-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Revised: 10/01/2020] [Accepted: 10/12/2020] [Indexed: 11/29/2022]
11
Catalytic Foldamers: When the Structure Guides the Function. Catalysts 2020. [DOI: 10.3390/catal10060700] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
12
Kim T, Stogios PJ, Khusnutdinova AN, Nemr K, Skarina T, Flick R, Joo JC, Mahadevan R, Savchenko A, Yakunin AF. Rational engineering of 2-deoxyribose-5-phosphate aldolases for the biosynthesis of (R)-1,3-butanediol. J Biol Chem 2019;295:597-609. [PMID: 31806708 DOI: 10.1074/jbc.ra119.011363] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2019] [Revised: 12/04/2019] [Indexed: 12/14/2022]  Open
13
Yang X, Yuan Q, Luo H, Li F, Mao Y, Zhao X, Du J, Li P, Ju X, Zheng Y, Chen Y, Liu Y, Jiang H, Yao Y, Ma H, Ma Y. Systematic design and in vitro validation of novel one-carbon assimilation pathways. Metab Eng 2019;56:142-153. [DOI: 10.1016/j.ymben.2019.09.001] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Revised: 08/17/2019] [Accepted: 09/01/2019] [Indexed: 11/24/2022]
14
Park SB, White SB, Steadman CS, Pechan T, Pechanova O, Clemente HJ, Thirumalai RVKG, Willard ST, Ryan PL, Feugang JM. Silver-coated magnetic nanocomposites induce growth inhibition and protein changes in foodborne bacteria. Sci Rep 2019;9:17499. [PMID: 31767879 PMCID: PMC6877574 DOI: 10.1038/s41598-019-53080-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2019] [Accepted: 10/21/2019] [Indexed: 01/13/2023]  Open
15
Heterologous expression and characterization of novel 2-Deoxy-d-ribose-5-phosphate aldolase (DERA) from Pyrobaculum calidifontis and Meiothermus ruber. Process Biochem 2019. [DOI: 10.1016/j.procbio.2019.02.006] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
16
Haridas M, Abdelraheem EMM, Hanefeld U. 2-Deoxy-D-ribose-5-phosphate aldolase (DERA): applications and modifications. Appl Microbiol Biotechnol 2018;102:9959-9971. [PMID: 30284013 PMCID: PMC6244999 DOI: 10.1007/s00253-018-9392-8] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2018] [Revised: 09/11/2018] [Accepted: 09/12/2018] [Indexed: 11/25/2022]
17
Nemr K, Müller JE, Joo JC, Gawand P, Choudhary R, Mendonca B, Lu S, Yu X, Yakunin AF, Mahadevan R. Engineering a short, aldolase-based pathway for (R)-1,3-butanediol production in Escherichia coli. Metab Eng 2018;48:13-24. [DOI: 10.1016/j.ymben.2018.04.013] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2017] [Revised: 04/17/2018] [Accepted: 04/18/2018] [Indexed: 01/03/2023]
18
Schulte M, Petrović D, Neudecker P, Hartmann R, Pietruszka J, Willbold S, Willbold D, Panwalkar V. Conformational Sampling of the Intrinsically Disordered C-Terminal Tail of DERA Is Important for Enzyme Catalysis. ACS Catal 2018;8:3971-3984. [PMID: 30101036 PMCID: PMC6080863 DOI: 10.1021/acscatal.7b04408] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2017] [Revised: 03/24/2018] [Indexed: 12/13/2022]
19
Schulte M, Stoldt M, Neudecker P, Pietruszka J, Willbold D, Panwalkar V. 1H, 13C, and 15N backbone and sidechain resonance assignments of a monomeric variant of E. coli deoxyribose-5-phosphate aldolase. BIOMOLECULAR NMR ASSIGNMENTS 2017;11:197-201. [PMID: 28560616 DOI: 10.1007/s12104-017-9747-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Accepted: 05/29/2017] [Indexed: 06/07/2023]
20
Ohshida T, Hayashi J, Satomura T, Kawakami R, Ohshima T, Sakuraba H. First characterization of extremely halophilic 2-deoxy-D-ribose-5-phosphate aldolase. Protein Expr Purif 2016;126:62-68. [DOI: 10.1016/j.pep.2016.05.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2016] [Revised: 04/22/2016] [Accepted: 05/19/2016] [Indexed: 11/28/2022]
21
Cao TP, Kim JS, Woo MH, Choi JM, Jun Y, Lee KH, Lee SH. Structural insight for substrate tolerance to 2-deoxyribose-5-phosphate aldolase from the pathogen Streptococcus suis. J Microbiol 2016;54:311-21. [PMID: 27033207 DOI: 10.1007/s12275-016-6029-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2016] [Revised: 03/02/2016] [Accepted: 03/03/2016] [Indexed: 10/22/2022]
22
Stanton CL, Houk KN. Benchmarking pKa Prediction Methods for Residues in Proteins. J Chem Theory Comput 2015;4:951-66. [PMID: 26621236 DOI: 10.1021/ct8000014] [Citation(s) in RCA: 63] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
23
Ma H, Szeler K, Kamerlin SCL, Widersten M. Linking coupled motions and entropic effects to the catalytic activity of 2-deoxyribose-5-phosphate aldolase (DERA). Chem Sci 2015;7:1415-1421. [PMID: 29910900 PMCID: PMC5975929 DOI: 10.1039/c5sc03666f] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2015] [Accepted: 11/17/2015] [Indexed: 12/13/2022]  Open
24
Iwahara J, Esadze A, Zandarashvili L. Physicochemical Properties of Ion Pairs of Biological Macromolecules. Biomolecules 2015;5:2435-63. [PMID: 26437440 PMCID: PMC4693242 DOI: 10.3390/biom5042435] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2015] [Revised: 09/09/2015] [Accepted: 09/11/2015] [Indexed: 11/23/2022]  Open
25
Wang Y, Jones MK, Xu H, Ray WK, White RH. Mechanism of the Enzymatic Synthesis of 4-(Hydroxymethyl)-2-furancarboxaldehyde-phosphate (4-HFC-P) from Glyceraldehyde-3-phosphate Catalyzed by 4-HFC-P Synthase. Biochemistry 2015;54:2997-3008. [DOI: 10.1021/acs.biochem.5b00176] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
26
de Gracia Retamosa M, de Cózar A, Sánchez M, Miranda JI, Sansano JM, Castelló LM, Nájera C, Jiménez AI, Sayago FJ, Cativiela C, Cossío FP. Remote Substituent Effects on the Stereoselectivity and Organocatalytic Activity of Densely Substituted Unnatural Proline Esters in Aldol Reactions. European J Org Chem 2015. [DOI: 10.1002/ejoc.201500160] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
27
Tonkin ML, Halavaty AS, Ramaswamy R, Ruan J, Igarashi M, Ngô HM, Boulanger MJ. Structural and functional divergence of the aldolase fold in Toxoplasma gondii. J Mol Biol 2014;427:840-852. [PMID: 25284756 DOI: 10.1016/j.jmb.2014.09.019] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2014] [Revised: 08/27/2014] [Accepted: 09/23/2014] [Indexed: 10/24/2022]
28
Woo MH, Kim MS, Chung N, Kim JS. Expression and characterization of a novel 2-deoxyribose-5-phosphate aldolase from Haemophilus influenzae Rd KW20. ACTA ACUST UNITED AC 2014. [DOI: 10.1007/s13765-014-4231-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
29
Small molecule probes to quantify the functional fraction of a specific protein in a cell with minimal folding equilibrium shifts. Proc Natl Acad Sci U S A 2014;111:4449-54. [PMID: 24591605 DOI: 10.1073/pnas.1323268111] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
30
Bjelic S, Kipnis Y, Wang L, Pianowski Z, Vorobiev S, Su M, Seetharaman J, Xiao R, Kornhaber G, Hunt JF, Tong L, Hilvert D, Baker D. Exploration of alternate catalytic mechanisms and optimization strategies for retroaldolase design. J Mol Biol 2013;426:256-71. [PMID: 24161950 DOI: 10.1016/j.jmb.2013.10.012] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2013] [Revised: 10/08/2013] [Accepted: 10/09/2013] [Indexed: 12/13/2022]
31
Larrañaga O, de Cózar A, Bickelhaupt FM, Zangi R, Cossío FP. Aggregation and cooperative effects in the aldol reactions of lithium enolates. Chemistry 2013;19:13761-73. [PMID: 23964002 DOI: 10.1002/chem.201301597] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2013] [Indexed: 11/11/2022]
32
Comba González N, Vallejo AF, Sánchez-Gómez M, Montoya D. Protein identification in two phases of 1,3-propanediol production by proteomic analysis. J Proteomics 2013;89:255-64. [PMID: 23811541 DOI: 10.1016/j.jprot.2013.06.011] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2012] [Revised: 05/04/2013] [Accepted: 06/13/2013] [Indexed: 10/26/2022]
33
Ošlaj M, Cluzeau J, Orkić D, Kopitar G, Mrak P, Časar Z. A highly productive, whole-cell DERA chemoenzymatic process for production of key lactonized side-chain intermediates in statin synthesis. PLoS One 2013;8:e62250. [PMID: 23667462 PMCID: PMC3647077 DOI: 10.1371/journal.pone.0062250] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2013] [Accepted: 03/19/2013] [Indexed: 11/18/2022]  Open
34
Characterization and application of a newly synthesized 2-deoxyribose-5-phosphate aldolase. J Ind Microbiol Biotechnol 2012. [PMID: 23179467 DOI: 10.1007/s10295-012-1213-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
35
Nosrati GR, Houk KN. Using catalytic atom maps to predict the catalytic functions present in enzyme active sites. Biochemistry 2012;51:7321-9. [PMID: 22909276 DOI: 10.1021/bi3008438] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
36
Zandvoort E, Geertsema EM, Quax WJ, Poelarends GJ. Enhancement of the Promiscuous Aldolase and Dehydration Activities of 4-Oxalocrotonate Tautomerase by Protein Engineering. Chembiochem 2012;13:1274-7. [DOI: 10.1002/cbic.201200225] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2012] [Indexed: 11/06/2022]
37
Cheriyan M, Toone EJ, Fierke CA. Improving upon nature: active site remodeling produces highly efficient aldolase activity toward hydrophobic electrophilic substrates. Biochemistry 2012;51:1658-68. [PMID: 22316217 DOI: 10.1021/bi201899b] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
38
Improvement of aldehyde tolerance and sequential aldol condensation activity of deoxyriboaldolase via immobilization on interparticle pore type mesoporous silica. ACTA ACUST UNITED AC 2011. [DOI: 10.1016/j.molcatb.2010.10.008] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
39
Baker D. An exciting but challenging road ahead for computational enzyme design. Protein Sci 2011;19:1817-9. [PMID: 20717908 DOI: 10.1002/pro.481] [Citation(s) in RCA: 135] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
40
Wang W, Baker P, Seah SYK. Comparison of two metal-dependent pyruvate aldolases related by convergent evolution: substrate specificity, kinetic mechanism, and substrate channeling. Biochemistry 2010;49:3774-82. [PMID: 20364820 DOI: 10.1021/bi100251u] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
41
Kim YM, Chang YH, Choi NS, Kim Y, Song JJ, Kim JS. Cloning, expression, and characterization of a new deoxyribose 5-phosphate aldolase from Yersinia sp. EA015. Protein Expr Purif 2009;68:196-200. [PMID: 19505577 DOI: 10.1016/j.pep.2009.06.002] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2009] [Revised: 06/01/2009] [Accepted: 06/01/2009] [Indexed: 11/29/2022]
42
Berkholz DS, Faber HR, Savvides SN, Karplus PA. Catalytic cycle of human glutathione reductase near 1 A resolution. J Mol Biol 2008;382:371-84. [PMID: 18638483 PMCID: PMC2593804 DOI: 10.1016/j.jmb.2008.06.083] [Citation(s) in RCA: 92] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2008] [Revised: 06/08/2008] [Accepted: 06/26/2008] [Indexed: 11/17/2022]
43
Zhang J, Sprung R, Pei J, Tan X, Kim S, Zhu H, Liu CF, Grishin NV, Zhao Y. Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli. Mol Cell Proteomics 2008;8:215-25. [PMID: 18723842 DOI: 10.1074/mcp.m800187-mcp200] [Citation(s) in RCA: 397] [Impact Index Per Article: 23.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
44
Walters MJ, Srikannathasan V, McEwan AR, Naismith JH, Fierke CA, Toone EJ. Characterization and crystal structure of Escherichia coli KDPGal aldolase. Bioorg Med Chem 2008;16:710-20. [PMID: 17981470 PMCID: PMC3326530 DOI: 10.1016/j.bmc.2007.10.043] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2007] [Revised: 10/05/2007] [Accepted: 10/12/2007] [Indexed: 11/29/2022]
45
Kramer JW, Joh DY, Coates GW. Carbonylation of epoxides to substituted 3-hydroxy-delta-lactones. Org Lett 2007;9:5581-3. [PMID: 18027958 PMCID: PMC2596996 DOI: 10.1021/ol702475e] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Sakuraba H, Yoneda K, Yoshihara K, Satoh K, Kawakami R, Uto Y, Tsuge H, Takahashi K, Hori H, Ohshima T. Sequential aldol condensation catalyzed by hyperthermophilic 2-deoxy-d-ribose-5-phosphate aldolase. Appl Environ Microbiol 2007;73:7427-34. [PMID: 17905878 PMCID: PMC2168217 DOI: 10.1128/aem.01101-07] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
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Jennewein S, Schürmann M, Wolberg M, Hilker I, Luiten R, Wubbolts M, Mink D. Directed evolution of an industrial biocatalyst: 2-deoxy-D-ribose 5-phosphate aldolase. Biotechnol J 2006;1:537-48. [PMID: 16892289 DOI: 10.1002/biot.200600020] [Citation(s) in RCA: 100] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Walters MJ, Srikannathasan V, McEwan AR, Naismith JH, Fierke CA, Toone EJ. Mechanism of the Class I KDPG aldolase. Bioorg Med Chem 2006;14:3002-10. [PMID: 16403639 PMCID: PMC3315828 DOI: 10.1016/j.bmc.2005.12.022] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2005] [Revised: 12/04/2005] [Accepted: 12/09/2005] [Indexed: 11/17/2022]
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