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For: Balakrishnan L, Milavetz B. Histone hyperacetylation in the coding region of chromatin undergoing transcription in SV40 minichromosomes is a dynamic process regulated directly by the presence of RNA polymerase II. J Mol Biol 2006;365:18-30. [PMID: 17055528 PMCID: PMC1847586 DOI: 10.1016/j.jmb.2006.09.044] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2006] [Revised: 09/11/2006] [Accepted: 09/13/2006] [Indexed: 11/22/2022]
Number Cited by Other Article(s)
1
Ismail AM, Saha A, Morrissey KA, Lundquist D, Garcia E, Balne P, Cannon JL, Chodosh J, Rajaiya J. OCT4 Negatively Regulates the Transcriptional Programming of the Early Region 3 Immune Evasion Genes of Human Adenovirus. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.04.23.650321. [PMID: 40376086 PMCID: PMC12080961 DOI: 10.1101/2025.04.23.650321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2025]
2
Rowbotham K, Hanson B, Haugen J, Milavetz B. Early in an SV40 infection, histone modifications correlate with the presence or absence of RNAPII and direction of transcription. Virology 2022;573:59-71. [PMID: 35717712 DOI: 10.1016/j.virol.2022.05.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Revised: 05/06/2022] [Accepted: 05/31/2022] [Indexed: 10/18/2022]
3
Lin Y, Qiu T, Wei G, Que Y, Wang W, Kong Y, Xie T, Chen X. Role of Histone Post-Translational Modifications in Inflammatory Diseases. Front Immunol 2022;13:852272. [PMID: 35280995 PMCID: PMC8908311 DOI: 10.3389/fimmu.2022.852272] [Citation(s) in RCA: 44] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Accepted: 01/24/2022] [Indexed: 12/12/2022]  Open
4
Safari M, Litman T, Robey RW, Aguilera A, Chakraborty AR, Reinhold WC, Basseville A, Petrukhin L, Scotto L, O'Connor OA, Pommier Y, Fojo AT, Bates SE. R-Loop-Mediated ssDNA Breaks Accumulate Following Short-Term Exposure to the HDAC Inhibitor Romidepsin. Mol Cancer Res 2021;19:1361-1374. [PMID: 34050002 PMCID: PMC8974437 DOI: 10.1158/1541-7786.mcr-20-0833] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Revised: 03/25/2021] [Accepted: 05/03/2021] [Indexed: 11/16/2022]
5
Rowbotham K, Haugen J, Milavetz B. Differential SP1 interactions in SV40 chromatin from virions and minichromosomes. Virology 2020;548:124-131. [PMID: 32838933 PMCID: PMC10035769 DOI: 10.1016/j.virol.2020.06.012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2020] [Revised: 06/17/2020] [Accepted: 06/18/2020] [Indexed: 11/26/2022]
6
Wang Z, Liu S, Tao Y. Regulation of chromatin remodeling through RNA polymerase II stalling in the immune system. Mol Immunol 2019;108:75-80. [PMID: 30784765 DOI: 10.1016/j.molimm.2019.02.012] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2018] [Revised: 02/13/2019] [Accepted: 02/14/2019] [Indexed: 12/11/2022]
7
Balakrishnan L, Milavetz B. Epigenetic Regulation of Viral Biological Processes. Viruses 2017;9:v9110346. [PMID: 29149060 PMCID: PMC5707553 DOI: 10.3390/v9110346] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2017] [Revised: 11/13/2017] [Accepted: 11/15/2017] [Indexed: 12/21/2022]  Open
8
Balakrishnan L, Milavetz B. Epigenetic Analysis of SV40 Minichromosomes. ACTA ACUST UNITED AC 2017;46:14F.3.1-14F.3.26. [PMID: 28800155 DOI: 10.1002/cpmc.35] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
9
Viral epigenetics. Methods Mol Biol 2015;1238:569-96. [PMID: 25421681 DOI: 10.1007/978-1-4939-1804-1_30] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
10
Transcriptional repression is epigenetically marked by H3K9 methylation during SV40 replication. Clin Epigenetics 2014;6:21. [PMID: 25395994 PMCID: PMC4230732 DOI: 10.1186/1868-7083-6-21] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2014] [Accepted: 10/07/2014] [Indexed: 11/10/2022]  Open
11
Milavetz B, Kallestad L, Gefroh A, Adams N, Woods E, Balakrishnan L. Virion-mediated transfer of SV40 epigenetic information. Epigenetics 2012;7:528-34. [PMID: 22507897 DOI: 10.4161/epi.20057] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
12
Biglione S, Tsytsykova AV, Goldfeld AE. Monocyte-specific accessibility of a matrix attachment region in the tumor necrosis factor locus. J Biol Chem 2011;286:44126-44133. [PMID: 22027829 PMCID: PMC3243562 DOI: 10.1074/jbc.m111.272476] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
13
Kim E, Napierala M, Dent SYR. Hyperexpansion of GAA repeats affects post-initiation steps of FXN transcription in Friedreich's ataxia. Nucleic Acids Res 2011;39:8366-77. [PMID: 21745819 PMCID: PMC3201871 DOI: 10.1093/nar/gkr542] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2011] [Revised: 06/12/2011] [Accepted: 06/13/2011] [Indexed: 12/19/2022]  Open
14
Balakrishnan L, Milavetz B. Decoding the histone H4 lysine 20 methylation mark. Crit Rev Biochem Mol Biol 2011;45:440-52. [PMID: 20735237 DOI: 10.3109/10409238.2010.504700] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
15
Komatsu T, Haruki H, Nagata K. Cellular and viral chromatin proteins are positive factors in the regulation of adenovirus gene expression. Nucleic Acids Res 2010;39:889-901. [PMID: 20926393 PMCID: PMC3035442 DOI: 10.1093/nar/gkq783] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
16
Balakrishnan L, Milavetz B. Dual agarose magnetic (DAM) ChIP. BMC Res Notes 2009;2:250. [PMID: 20003449 PMCID: PMC2799436 DOI: 10.1186/1756-0500-2-250] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2009] [Accepted: 12/14/2009] [Indexed: 11/10/2022]  Open
17
HDAC inhibitors stimulate viral transcription by multiple mechanisms. Virol J 2008;5:43. [PMID: 18353181 PMCID: PMC2291040 DOI: 10.1186/1743-422x-5-43] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2008] [Accepted: 03/19/2008] [Indexed: 11/10/2022]  Open
18
Balakrishnan L, Milavetz B. Histone hyperacetylation during SV40 transcription is regulated by p300 and RNA polymerase II translocation. J Mol Biol 2007;371:1022-37. [PMID: 17658552 PMCID: PMC1987373 DOI: 10.1016/j.jmb.2007.06.080] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2007] [Revised: 06/17/2007] [Accepted: 06/25/2007] [Indexed: 01/03/2023]
19
Dahl J, Chen HI, George M, Benjamin TL. Polyomavirus small T antigen controls viral chromatin modifications through effects on kinetics of virus growth and cell cycle progression. J Virol 2007;81:10064-71. [PMID: 17626093 PMCID: PMC2045420 DOI: 10.1128/jvi.00821-07] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
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