Bioremediation of polycyclic aromatic hydrocarbons in contaminated mangroves: Understanding the historical and key parameter profiles

Evaluation of the immobilized enzymes function in soil remediation following polycyclic aromatic hydrocarbon contamination

The bioremediation of polycyclic aromatic hydrocarbon (PAHs) from soil utilizing microorganisms, enzymes, microbial consortiums, strains, etc. has attracted a lot of interest due to the environmentally friendly, and cost-effective features. Enzymes can efficiently break down PAHs in soil by hydroxylating the benzene ring, breaking the C-C bond, and catalyze the hydroxylation of a variety of benzene ring compounds via single-electron transfer oxidation. However, the practical application is limited by its instability and ease to loss function under harsh environmental conditions such as pH, temperature, and edaphic stress etc. Therefore, this paper focused on the techniques used to immobilize enzymes and remediate PAHs in soil. Moreover, previous research has not adequately covered this topic, despite the employment of several immobilized enzymes in aqueous solution cultures to remediate other types of organic pollutants. Bibliometric analysis further highlighted the research trends from 2000 to 2023 on this field of growing interest and identified important challenges regarding enzyme stability and interaction with soil matrices. The findings indicated that immobilized enzymes may catalyzed PAHs via oxidation of OH groups in benzene rings, and generate benzyl radicals (i.e., •OH and •O2) that undergo further reaction and release water. As a result, the intermediate products of PAHs further catalyze by enzyme and enzyme induced microbes producing carbon dioxide and water. Meanwhile efficiency, activity, lifetime, resilience, and sustainability of immobilized enzyme need to be further improved for the large-scale and field-scale clean-up of PAHs polluted soils. This could be possible by integrating enzyme-based with microbial and plant-based remediation strategies. It can be coupled with another line of research focused on using a new set of support materials that can be derived from natural resources.

Microbe-plant-nanoparticle interactions: role in bioremediation of petroleum hydrocarbons

Petroleum hydrocarbons (PHCs) are organic substances that occur naturally on earth. PHCs have emerged as one of the most prevalent and detrimental contaminants in regions comprising soil and water resources. The limitations of conventional physicochemical and biological remediation solutions could be solved by combining remediation techniques. An effective, affordable, and environmentally benign method of reducing petroleum toxins is provided by the advanced idea of bioremediation, which has evolved into nanobioremediation. Environments contaminated with PHCs have been restored through microbe-plant-nanoparticle (NP)-mediated remediation, this review emphasizes how various metallic NPs interact with microbes and plants changing both their activity and that of enzymes, therefore accelerating the remediation process. This work further examines the challenges and possible uses of nanobioremediation, as well as the application of novel technologies in the interactions between bacteria, plants, and NPs for the bioremediation of PHCs. Furthermore, it has been shown that the use of plant-based, microbe-based, microbe-plant-based, and microbe-plant-NP-based techniques to remediate contaminated soils or water bodies is economical and environmentally beneficial. Microbial consortia have been reported as the treasure houses for the cleaning and recovery of hydrocarbon-contaminated environments, and the development of technologies for bioremediation requires an understanding of hydrocarbon degradation mechanisms.

Biodegradation of phthalic acid esters by a novel marine bacterial strain RL-BY03: Characterization, metabolic pathway, bioaugmentation and genome analysis

Biodegradation is recognized as the main route for the decomposition of phthalic acid esters (PAEs) in nature, but the fate of PAEs in marine ecosystems is not well understood. Herein, a novel marine bacterium, Gordonia sihwaniensis RL-BY03, was identified and analyzed for its ability to degrade PAEs. Furthermore, the metabolic mechanism of di-(2-ethylhexyl) phthalate (DEHP) was examined through UPLC-MS/MS and genomic analysis. RL-BY03 could rely solely on several types of PAEs as its sole carbon source. Initial pH and temperature for DEHP degradation were optimized as 8.0 and 30 °C, respectively. Surprisingly, RL-BY03 could simultaneously degrade ethyl acetate and DEHP and they could increase the cell surface hydrophobicity. DEHP degradation kinetics fitted well with the first-order decay model. The metabolic pathway of DEHP was deduced following the detection of five metabolic intermediates. Further, genes that are related to DEHP degradation were identified through genomic analysis and their expression levels were validated through RT-qPCR. A co-related metabolic pathway at biochemical and molecular level indicated that DEHP was turned into DBP and DEP by β-oxidation, which was further hydrolyzed into phthalic acid. Phthalic acid was utilized through catechol branch of β-ketoadipate pathway. Additionally, RL-BY03 exhibited excellent bioremediation potential for DEHP-contaminated marine samples. In general, these findings have the potential to enhance our understanding of the fate of PAEs in marine ecosystems.

Evaluation of Differentially Expressed Candidate Genes in Benzo[a]pyrene Degradation by Burkholderia vietnamiensis G4

Bacteria-mediated bioremediation is widely employed for its environmental benefits. The genus Burkholderia can degrade persistent organic compounds, however, little is known about its mechanisms. To increase this knowledge, Burkholderia vietnamiensis G4 bacteria were exposed to benzo[a]pyrene, a recalcitrant compound, and the expression of twelve genes of interest was analyzed at 1, 12 and 24 h. In addition, benzo[a]pyrene degradation, evaluation of cell viability and fluorescence emission of assimilated benzo[a]pyrene was performed over 28 days. The up-regulated genes were xre, paaE, livG and pckA at the three times, ACAD, atoB, bmoA and proV at 1 h and AstB at 12 h. These genes are important for bacterial survival in stress situations, breakdown and metabolization of organic compounds, and nutrient transport and uptake. Furthermore, a 52% reduction of the pollutant was observed, there was no significant variation in the viability rate of the cells, and fluorescence indicated an accumulation of benzo[a]pyrene after 24 h. Our study demonstrates the bacteria adaptability and ability to modulate the expression of genes at different times and as needed. This increases our understanding of biodegradation processes and opens new possibilities for using this bacterial strain as a tool for the bioremediation of contaminated areas.

Diversity of hydrocarbon-degrading bacteria in mangroves rhizosphere as an indicator of oil-pollution bioremediation in mangrove forests

Mangrove ecosystems, characterized by high levels of productivity, are susceptible to anthropogenic activities, notably oil pollution arising from diverse origins including spills, transportation, and industrial effluents. Owing to their role in climate regulation and economic significance, there is a growing interest in developing mangrove conservation strategies. In the Arabian Gulf, mangroves stand as the sole naturally occurring green vegetation due to the region's hot and arid climate. However, they have faced persistent oil pollution for decades. This review focuses on global mangrove distribution, with a specific emphasis on Qatar's mangroves. It highlights the ongoing challenges faced by mangroves, particularly in relation to the oil industry, and the impact of oil pollution on these vital ecosystems. It outlines major oil spill incidents worldwide and the diverse hydrocarbon-degrading bacterial communities within polluted areas, elucidating their potential for bioremediation. The use of symbiotic interactions between mangrove plants and bacteria offers a more sustainable, cost-effective and environmentally friendly alternative. However, the success of these bioremediation strategies depends on a deep understanding of the dynamics of bacterial communities, environmental factors and specific nature of the pollutants.

A systematic review of polycyclic aromatic hydrocarbon pollution: A combined bibliometric and mechanistic analysis of research trend toward an environmentally friendly solution

Pollution caused by polycyclic aromatic hydrocarbons (PAHs) is a significant concern. This concern has become more problematic given the rapid modification of PAHs in the environment during co-contamination to form substituted PAHs. This review aims to integrate bibliometric analysis with a rigorous study of mechanistic insights, resulting in a more comprehensive knowledge of evolving research trends on PAH remediation. The results show that research in this field has progressed over the years and peaked in 2022, potentially due to the redirection of resources toward emerging pollutants, hinting at the dynamic nature of environmental research priorities. During this year, 158,147 documents were published, representing 7 % of the total publications in the field between 2000 and 2023. The different remediation methods used for PAH remediation were identified and compared. Bioremediation, having >90 % removal efficiency, has been revealed to be the best technique because it is cost-effective and easy to operate at large scale in situ and ex-situ. The current challenges in PAH remediation have been detailed and discussed. Implementing innovative and sustainable technologies that target pollutant removal and valuable compound recovery is necessary to build a more robust future for water management.

Emerging trends in wastewater treatment: Addressing microorganic pollutants and environmental impacts

This review focuses on the challenges and advances associated with the treatment and management of microorganic pollutants, encompassing pesticides, industrial chemicals, and persistent organic pollutants (POPs) in the environment. The translocation of these contaminants across multiple media, particularly through atmospheric transport, emphasizes their pervasive nature and the subsequent ecological risks. The urgency to develop cost-effective remediation strategies for emerging organic contaminants is paramount. As such, wastewater-based epidemiology and the increasing concern over estrogenicity are explored. By incorporating conventional and innovative wastewater treatment techniques, this article highlights the integration of environmental management strategies, analytical methodologies, and the importance of renewable energy in waste treatment. The primary objective is to provide a comprehensive perspective on the current scenario, imminent threats, and future directions in mitigating the effects of these pollutants on the environment. Furthermore, the review underscores the need for international collaboration in developing standardized guidelines and policies for monitoring and controlling these microorganic pollutants. It advocates for increased investment in research and development of advanced materials and technologies that can efficiently remove or neutralize these contaminants, thereby safeguarding environmental health and promoting sustainable practice.

Contamination in mangrove ecosystems: A synthesis of literature reviews across multiple contaminant categories

Mangrove forests are exposed to diverse ocean-sourced and land-based contaminants, yet mangrove contamination research lags. We synthesize existing data and identify major gaps in research on five classes of mangrove contaminants: trace metals, persistent organic pollutants, polycyclic aromatic hydrocarbons, microplastics, and pharmaceuticals and personal care products. Research is concentrated in Asia, neglected in Africa and the Americas; higher concentrations are correlated with waste water treatment plants, industry, and urbanized landscapes. Trace metals and polycyclic aromatic hydrocarbons, frequently at concentrations below regulatory thresholds, may bioconcentrate in fauna, whereas persistent organic pollutants were at levels potentially harmful to biota through short- or long-term exposure. Microplastics were at variable levels, yet lack regulatory and ecotoxicological thresholds. Pharmaceuticals and personal care products received minimal research despite biological activity at small concentrations. Given potential synergistic effects, multi-contaminant research, increased monitoring of multiple contaminant classes, and increased public outreach and involvement are needed.

Exploring the bioremediation capability of petroleum-contaminated soils for enhanced environmental sustainability and minimization of ecotoxicological concerns

The bioremediation of soils contaminated with petroleum hydrocarbons (PHCs) has emerged as a promising approach, with its effectiveness contingent upon various types of PHCs, i.e., crude oil, diesel, gasoline, and other petroleum products. Strategies like genetically modified microorganisms, nanotechnology, and bioaugmentation hold potential for enhancing remediation of polycyclic aromatic hydrocarbon (PAH) contamination. The effectiveness of bioremediation relies on factors such as metabolite toxicity, microbial competition, and environmental conditions. Aerobic degradation involves enzymatic oxidative reactions, while bacterial anaerobic degradation employs reductive reactions with alternative electron acceptors. Algae employ monooxygenase and dioxygenase enzymes, breaking down PAHs through biodegradation and bioaccumulation, yielding hydroxylated and dihydroxylated intermediates. Fungi contribute via mycoremediation, using co-metabolism and monooxygenase enzymes to produce CO2 and oxidized products. Ligninolytic fungi transform PAHs into water-soluble compounds, while non-ligninolytic fungi oxidize PAHs into arene oxides and phenols. Certain fungi produce biosurfactants enhancing degradation of less soluble, high molecular-weight PAHs. Successful bioremediation offers sustainable solutions to mitigate petroleum spills and environmental impacts. Monitoring and assessing strategy effectiveness are vital for optimizing biodegradation in petroleum-contaminated soils. This review presents insights and challenges in bioremediation, focusing on arable land safety and ecotoxicological concerns.

Nano-bioremediation: an eco-friendly and effective step towards petroleum hydrocarbon removal from environment

Global concern about petroleum hydrocarbon pollution has intensified and gained scientific interest due to its noxious nature, high persistence in environmental matrices, and low degradability. One way to address this is by combining remediation techniques that could overcome the constraints of traditional physio-chemical and biological remediation strategies. The upgraded concept of bioremediation to nano-bioremediation in this direction offers an efficient, economical, and eco-friendly approach to mitigate petroleum contaminants. Here, we review the unique attributes of different types of nanoparticles and their synthesis procedures in remediating various petroleum pollutants. This review also highlights the microbial interaction with different metallic nanoparticles and their consequential alteration in microbial as well as enzymatic activity which expedites the remediating process. Besides, the latter part of the review explores the application of petroleum hydrocarbon degradation and the application of nano supports as immobilizing agents for microbes and enzymes. Further, the challenges and the future prospects of nano-bioremediation have also been discussed.

Distribution and risk assessment of microplastics in typical ecosystems in the South China Sea

Microplastic pollution in the marine environment has attracted worldwide attention. The South China Sea is considered a hotspot for microplastic pollution due to the developed industries and high population density around the South China Sea. The accumulation of microplastics in ecosystems can adversely affect the health of the environment and organisms. This paper reviews the recent microplastic studies conducted in the South China Sea, which novelty summarizes the abundance, types, and potential hazards of microplastics in coral reef ecosystems, mangrove ecosystems, seagrass bed ecosystems, and macroalgal ecosystems. A summary of the microplastic pollution status of four ecosystems and a risk assessment provides a more comprehensive understanding of the impact of microplastic pollution on marine ecosystems in the South China Sea. Microplastic abundances of up to 45,200 items/m³ were reported in coral reef surface waters, 5738.3 items/kg in mangrove sediments, and 927.3 items/kg in seagrass bed sediments. There are few studies of microplastics in the South China Sea macroalgae ecosystems. However, studies from other areas indicate that macroalgae can accumulate microplastics and are more likely to enter the food chain or be consumed by humans. Finally, this paper compared the current risk levels of microplastics in the coral reef, mangrove, and seagrass bed ecosystems based on available studies. Pollution load index (PLI) ranges from 3 to 31 in mangrove ecosystems, 5.7 to 11.9 in seagrass bed ecosystems, and 6.1 to 10.2 in coral reef ecosystems, respectively. The PLI index varies considerably between mangroves depending on the intensity of anthropogenic activity around the mangrove. Further studies on seagrass beds and macroalgal ecosystems are required to extend our understanding of microplastic pollution in marine environments. Recent microplastic detection in fish muscle tissue in mangroves requires more research to further the biological impact of microplastic ingestion and the potential food safety risks.

Burkholderia vietnamiensis G4 as a biological agent in bioremediation processes of polycyclic aromatic hydrocarbons in sludge farms

Polycyclic aromatic hydrocarbons (PAHs) are one of the main pollutants generated by the refining and use of oil. To search bioremediation alternatives for these compounds, mainly in situ, considering the biotic and abiotic variables that affect the contaminated sites is determinant for the success of bioremediation techniques. In this study, bioremediation strategies were evaluated in situ, including biostimulation and bioaugmentation for 16 priority PAHs present in activated sludge farms. B. vietnamiensis G4 was used as a biodegradation agent for bioaugmentation tests. The analyses occurred for 12 months, and temperature and humidity were measured to verify the effects of these factors on the biodegradation. We used the technique GC-MS to evaluate and quantify the degradation of PAHs over the time of the experiment. Of the four treatments applied, bioaugmentation with quarterly application proved to be the best strategy, showing the degradation of compounds of high (34.4% annual average) and low (21.9% annual average) molecular weight. A high degradation rate for high molecular weight compounds demonstrates that this technique can be successfully applied in bioremediation of areas with compounds considered toxic and stable in nature, contributing to the mitigation of impacts generated by PAHs.

Hydrocarbon Degradation and Microbial Survival Improvement in Response to γ-Polyglutamic Acid Application

To improve the environmental sustainability of cleanup activities of contaminated sites there is a need to develop technologies that minimize soil and habitat disturbances. Cleanup technologies, such as bioremediation, are based on biological products and processes, and they are important for the future of our planet. We studied the potential of γ-poly glutamic acid (PGA) as a natural component of biofilm produced by Bacillus sp. to be used for the decomposition of petroleum products, such as heavy naphtha (N), lubricating oil (O), and grease (G). The study aimed to assess the impact of the use of different concentrations of PGA on the degradation process of various fractions of petroleum hydrocarbons (PH) and its effect on bacterial population growth in harsh conditions of PH contamination. In laboratory conditions, four treatments of PGA with each of the petroleum products (N, O, and G) were tested: PGA₀ (reference), PGA₁ (1% PGA), PGA_1B (1% PGA with Bacillus licheniformis), and PGA₁₀ (10% PGA). After 7, 28, 56, and 112 days of the experiment, the percentage yield extraction, hydrocarbon mass loss, geochemical ratios, pH, electrical conductivity, and microorganisms survival were determined. We observed an increase in PH removal, reflected as a higher amount of extraction yield (growing with time and reaching about 11% in G) and loss of hydrocarbon mass (about 4% in O and G) in all treatments of the PGA compared to the reference. The positive degradation impact was intensive until around day 60. The PH removal stimulation by PGA was also reflected by changes in the values of geochemical ratios, which indicated that the highest rate of degradation was at the initial stage of the process. In general, for the stimulation of PH removal, using a lower (1%) concentration of PGA resulted in better performance than a higher concentration (10%). The PH removal facilitated by PGA is related to the anionic homopoliamid structure of the molecule and its action as a surfactant, which leads to the formation of micelles and the gradual release of PH absorbed in the zeolite carrier. Moreover, the protective properties of PGA against the extinction of bacteria under high concentrations of PH were identified. Generally, the γ-PGA biopolymer helps to degrade the hydrocarbon pollutants and stabilize the environment suitable for microbial degraders development.

Polycyclic aromatic hydrocarbons (PAHs) in mangrove ecosystems: A review

Polycyclic aromatic hydrocarbons (PAHs) are organic pollutants of increasing concern in the different fields of the environment and human health. There are 16 of them that are recognized as priority pollutants by the US environmental protection agency due to their mutagenic and carcinogenic potentials. Due to their hydrophobicity and stability, they are persistent in the environment and can be transported over long distances. Their toxicological effects on multiple species, including humans, as well as their bioaccumulation in the food web became major topics in organic pollutants research this last decade. In the environment, multiple studies have been conducted on their accumulation in the soil and their degradation processes resulting in numerous review papers. However, the dynamics of PAHs in mangrove ecosystems is not yet completely understood. In this review paper, an exhaustive presentation of what is known about PAHs and their transfer, accumulation, and degradation in mangrove ecosystems is offered. This article brings to light the knowledge already acquired on the subject and the perspective research necessary to fully comprehend PAHs dynamics in mangrove ecosystems.