Host range, severity and trans boundary transmission of Orf virus (ORFV)

First identification of ORF virus causing contagious ecthyma in Morocco (MOR20): Genomic, phylogenetic, and sequence variants analyses for vaccine design

The ORF virus induces a zoonotic contagious ecthyma disease, affecting small ruminants such as sheep and goats. ORF virus has not been identified in Morocco, and there is no vaccination protocol against contagious ecthyma. In this study, we analyzed the genome sequence of a new strain isolated in Morocco (MOR20) from a flock of sheep showing suspicious signs of Sheepox virus infection. ORFV MOR20 strain was isolated after 2 initial blind passages on Heart cells. The cytopathic effect was characterized by aggregation, swelling and detachment of cells, appearing 4 days after infection. The virus was harvested on day 6 pi with a titer of 107.2 TCID/ml. ORFV MOR20 was sequenced using the Illumina NovaSeq 6000 platform. After employing several bioinformatics tools, we identified that ORFV MOR20 shares 98.59% similarity with the TVL strain virus, which is used in a commercial live vaccine. Additionally, We aligned 33 ORFV genomic sequences with MOR20 sequences and visualized the pairwise comparisons using a Heat Map. ORFV was classified into two genetic groups: those isolated from sheep and those from goats. This was confirmed by a phylogenetic tree. Furthermore, we analyzed genetic variants identified in the MOR20 strain in comparison with ORFV TVL strain and found 636 sequence variants. Some genes, such as ORFV086, ORFV112, and ORFV132, have a particularly high number of sequence variants. All in all, ORFV MOR20 isolate represents a promising candidate for further studies aimed at developing a standardized vaccine against contagious ecthyma.

Detection of tick-borne pathogens in blood-fed ticks from animals across nine Asian countries

Climate change, land development, and increased outdoor human activity have increased the prevalence and distribution of tick-borne pathogens, causing public health issues. Asia is a pivotal region of emerging infectious diseases caused by zoonotic disease. Therefore, this study aimed to construct effective surveillance systems and establish preventive strategies against novel tick-borne diseases. Next-generation sequencing (NGS) was performed to detect tick-borne pathogens from animal blood-fed ticks. Ticks (n = 261) were collected from different animals across nine Asian countries between 2022 and 2023. Five genera of adults and nymphal ticks were used, namely, Amblyomma, Haemaphysalis, Hyalomma, Rhipicephalus, and Ixodes. The animals from which the ticks were collected were wild, domestic animals, birds, and reptiles, living in the natural environment. After NGS, clean reads of 18,382,262-30,460,619 DNA viruses, 22,744,384-32,400,471 RNA viruses, 134,506-286,282 16S rRNA of bacteria, and 147,154-352,826 18S rRNA of protozoa were obtained from nine Asian countries. After analysis of the species, 28 RNA, 13 DNA viruses, 16 bacteria, and 4 protozoa were detected. Several tick-borne pathogens, including those in families that cause zoonotic diseases, such as Phenuiviridae, Nairoviridae, Rickettsiaceae, and Borreliaceae, were identified. This study is distinctive in that it involved cooperative studies with nine Asian countries to prevent the spread of tick-borne diseases. The results suggest that pathogens, which were detected in animal blood-fed ticks, can circulate in animals and may be transmitted to humans. In addition, this study can provide a basis for effective surveillance systems to prevent novel pathogens.

IMPORTANCE

Surveillance systems against novel tick-borne diseases are significant for global health. Climate and other environmental changes have contributed to an expanding range of ticks and tick-borne diseases. Areas in Asia constitute key areas of emerging infectious diseases. Through analysis of blood-fed ticks, collected from various animals living in the natural environment, we suggest that tick-borne pathogens may harbor animals and environment and have potential risk of transmission in humans. Understanding the distribution of tick-borne pathogens requires cooperative studying and, thus, can construct standardized surveillance systems.

Contagious ecthyma in small ruminants: from etiology to vaccine challenges - a review

Orf virus (ORFV) is an epitheliotropic, double-stranded DNA pathogen belonging to the genus Parapoxvirus, and it is the causative agent of contagious ecthyma (CE) in small ruminants. It is an endemic disease on goat and sheep herds around the world. It is often a neglected disease, with impacts on herd health and productivity, while also being an occupational zoonosis. This review explores the causative agent of ovine ecthyma, its epidemiology, and clinical manifestations, with a particular emphasis on its interaction with the host's immune system and the development of ORFV vaccines. Like other members of the Poxviridae family, ORFV expresses numerous immunomodulatory genes, which complicate vaccination efforts and disease management. This review highlights the challenges posed by ORFV in achieving effective immunization and discusses potential vaccine strategies to overcome these obstacles.

Retrospective research: identifying and conducting phylogenetic analyses on four Orf virus strains isolated in Yunnan province between 2021 and 2023-revealing their significance and characteristic features

Contagious Eczema (CE), caused by ORFV, impacts sheep and goats globally, with severe symptoms and economic losses. The ORFV situation in Yunnan, China, was unclear before 2021-2023 study. Eleven scab samples from goats on small farms in three Yunnan municipalities were collected. Four ORFV strains were isolated and characterized using scanning electron microscopy, cytopathic effect observation, and PCR. Phylogenetic analyses of ORFV011 and ORFV059 genes showed significant results. For ORFV011, the nucleotide similarity of the four strains to D1701 strain was 98.4-99%. For ORFV059, it was 97.2-97.9% with OV-SA00 strain. These findings suggest gene rearrangements and interactions among strains during Yunnan's ORFV outbreak, forming a unique evolutionary lineage. Our study is the first comprehensive one on Yunnan's ORFV prevalence with in-depth phylogenetic analysis. It has important implications. In vaccine development, understanding genetic variances helps create better vaccines. For disease control, customized strategies like targeted quarantine and disinfection can be designed based on strain characteristics. From a public health aspect, as CE is zoonotic, closely monitoring ORFV in goats aids in predicting and preventing human infections, thus being significant for protecting goats against CE in Yunnan.

Preparation and application of fluorescent monoclonal antibodies recognizing goat CD4+CD25+ regulatory T cells

Regulatory T cells (Tregs) are a subset of T cells participating in a variety of diseases including mycoplasmal pneumonia, contagious ecthyma, and so on. The role of Tregs in goat contagious ecthyma is not completely understood due to the lack of species-specific antibodies. Here, we developed a combination of CD4 and CD25 fluorescence monoclonal antibodies (mAb) to recognize goat Tregs and assessed its utility in flow cytometry, immunofluorescence staining. Using immunofluorescence staining, we found that the frequency of Treg cells was positively correlated with the viral load during orf virus infection. These antibodies could serve as important tools to monitor Tregs during orf virus infection in goats. KEY POINTS: • A combination of fluorescent mAbs (C11 and D12) was prepared for the detection of goat Tregs. • C11 and D12 are effective in flow cytometry, immunofluorescence staining, and C11 has excellent species specificity. • The frequency of Treg cells was positively correlated with the viral load during orf virus infection.

Cross-species transmission and host range genes in poxviruses

The persistent epidemic of human mpox, caused by mpox virus (MPXV), raises concerns about the future spread of MPXV and other poxviruses. MPXV is a typical zoonotic virus which can infect human and cause smallpox-like symptoms. MPXV belongs to the Poxviridae family, which has a relatively broad host range from arthropods to vertebrates. Cross-species transmission of poxviruses among different hosts has been frequently reported and resulted in numerous epidemics. Poxviruses have a complex linear double-strand DNA genome that encodes hundreds of proteins. Genes related to the host range of poxvirus are called host range genes (HRGs). This review briefly introduces the taxonomy, phylogeny and hosts of poxviruses, and then comprehensively summarizes the current knowledge about the cross-species transmission of poxviruses. In particular, the HRGs of poxvirus are described and their impacts on viral host range are discussed in depth. We hope that this review will provide a comprehensive perspective about the current progress of researches on cross-species transmission and HRG variation of poxviruses, serving as a valuable reference for academic studies and disease control in the future.

The Global Evolutionary History of Orf Virus in Sheep and Goats Revealed by Whole Genomes Data

Orf virus (ORFV) belongs to the genus Parapoxvirus (Poxviridae family). It is the causative agent of contagious ecthyma (CE) that is an economically detrimental disease affecting small ruminants globally. Contagious ecthyma outbreaks are usually reported in intensive breeding of sheep and goats but they have also been reported in wildlife species. Notably, ORFV can infect humans, leading to a zoonotic disease. This study aims to elucidate the global evolutionary history of ORFV genomes in sheep and goats, including the first genomes from Central America in the analyses. In comparison to the last study on ORFV whole genomes, the database now includes 11 more sheep and goat genomes, representing an increase of 42%. The analysis of such a broader database made it possible to obtain a fine molecular dating of the coalescent time for ORFV S and G genomes, further highlighting the genetic structuring between sheep and goat genomes and corroborating their emergence in the latter half of 20th century.