1
|
Zhao Y, Xie J, Yu S, Wu Q, Wang Z, Shang Y, Wang Z, Zhang J, Zhai H, Huang Z, Ding Y, Wang J. A novel method of species-specific molecular target mining and accurate discrimination of Bacillus cereus sensu lato. Int J Food Microbiol 2025; 431:111068. [PMID: 39842315 DOI: 10.1016/j.ijfoodmicro.2025.111068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2024] [Revised: 11/24/2024] [Accepted: 01/12/2025] [Indexed: 01/24/2025]
Abstract
Bacillus cereus, a member of the Bacillus cereus sensu lato (B. cereus s.l.), is widely distributed in nature and can contaminate a variety of foods, leading to foodborne illnesses and substantial losses in the food industry. Although culture-based methods remain the gold standard for identifying B. cereus due to their high sensitivity under specific conditions, they are often complex and labor-intensive to implement. Furthermore, the high genetic similarity among certain members of the B. cereus s.l. makes it challenging to identify species-specific molecular targets, hindering the rapid and accurate differentiation of these bacteria. In this study, we introduce a novel method, comparative analysis based on whole genome slices (CAWGS), combined with the Basic Local Alignment Search Tool (BLAST) for efficient molecular target mining. Using CAWGS-BLAST and pan-genome analysis, we successfully identified new molecular targets for B. cereus, Bacillus thuringiensis, emetic B. cereus, Bacillus anthracis, Bacillus mycoides, Bacillus weihenstephanensis, and Bacillus megaterium. Based on these newly discovered targets, we developed a PCR-CRISPR/Cas12a method for detecting B. cereus s.l. and related species. Our research not only provides a rapid and accurate approach for discriminating B. cereus s.l. and related species, but also offers a universal and valuable reference for detecting foodborne pathogens, especially those with highly similar phenotypic and genetic characteristics.
Collapse
Affiliation(s)
- Yibing Zhao
- National Health Commission Science and Technology Innovation Platform for Nutrition and Safety of Microbial Food, Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China; College of Food Science, South China Agricultural University, Guangzhou 510432, China
| | - Jihang Xie
- National Health Commission Science and Technology Innovation Platform for Nutrition and Safety of Microbial Food, Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China; Department of Food Science and Engineering, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Shubo Yu
- National Health Commission Science and Technology Innovation Platform for Nutrition and Safety of Microbial Food, Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China
| | - Qingping Wu
- National Health Commission Science and Technology Innovation Platform for Nutrition and Safety of Microbial Food, Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China
| | - Zhi Wang
- National Health Commission Science and Technology Innovation Platform for Nutrition and Safety of Microbial Food, Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China
| | - Yuting Shang
- Department of Food Science and Engineering, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Zhengzheng Wang
- Department of Food Science and Engineering, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Jumei Zhang
- National Health Commission Science and Technology Innovation Platform for Nutrition and Safety of Microbial Food, Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China
| | - Huichan Zhai
- National Health Commission Science and Technology Innovation Platform for Nutrition and Safety of Microbial Food, Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China; College of Food Science, South China Agricultural University, Guangzhou 510432, China
| | - Zhenying Huang
- National Health Commission Science and Technology Innovation Platform for Nutrition and Safety of Microbial Food, Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China; College of Food Science, South China Agricultural University, Guangzhou 510432, China
| | - Yu Ding
- Department of Food Science and Engineering, College of Life Science and Technology, Jinan University, Guangzhou 510632, China.
| | - Juan Wang
- College of Food Science, South China Agricultural University, Guangzhou 510432, China.
| |
Collapse
|
2
|
Algammal AM, Eid HM, Alghamdi S, Ghabban H, Alatawy R, Almanzalawi EA, Alqahtani TM, Elfouly SG, Mohammed GM, Hetta HF, El-Tarabili RM. Meat and meat products as potential sources of emerging MDR Bacillus cereus: groEL gene sequencing, toxigenic and antimicrobial resistance. BMC Microbiol 2024; 24:50. [PMID: 38326741 PMCID: PMC10848520 DOI: 10.1186/s12866-024-03204-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Accepted: 01/24/2024] [Indexed: 02/09/2024] Open
Abstract
BACKGROUND Bacillus cereus is implicated in severe foodborne infection in humans. This study intended to assess the occurrence, groEL gene sequencing, biofilm production, and resistance profiles of emerged multidrug resistant (MDR) B. cereus in meat and meat product samples. Moreover, this work highlights the virulence and toxigenic genes (hblABCD complex, nheABC complex, cytK, ces, and pc-plc) and antimicrobial resistance genes (bla1, tetA, bla2, tetB, and ermA). METHODS Consequently, 200 samples (sausage, minced meat, luncheon, beef meat, and liver; n = 40 for each) were indiscriminately collected from commercial supermarkets in Port Said Province, Egypt, from March to May 2021. Subsequently, food samples were bacteriologically examined. The obtained isolates were tested for groEL gene sequence analysis, antibiotic susceptibility, biofilm production, and PCR screening of toxigenic and resistance genes. RESULTS The overall prevalence of B. cereus among the inspected food samples was 21%, where the highest predominance was detected in minced meat (42.5%), followed by beef meat (30%). The phylogenetic analysis of the groEL gene exposed that the examined B. cereus strain disclosed a notable genetic identity with other strains from the USA and China. Moreover, the obtained B. cereus strains revealed β-hemolytic activity, and 88.1% of the recovered strains tested positive for biofilm production. PCR evidenced that the obtained B. cereus strains usually inherited the nhe complex genes (nheA and nheC: 100%, and nheB: 83.3%), followed by cytK (76.2%), hbl complex (hblC and hblD: 59.5%, hblB: 16.6%, and hblA: 11.9%), ces (54.7%), and pc-plc (30.9%) virulence genes. Likewise, 42.9% of the examined B. cereus strains were MDR to six antimicrobial classes and encoded bla1, bla2, ermA, and tetA genes. CONCLUSION In summary, this study highlights the presence of MDR B. cereus in meat and meat products, posing a significant public health risk. The contamination by B. cereus is common in minced meat and beef meat. The molecular assay is a reliable fundamental tool for screening emerging MDR B. cereus strains in meat and meat products.
Collapse
Affiliation(s)
- Abdelazeem M Algammal
- Department of Bacteriology, Immunology and Mycology, Faculty of Veterinary Medicine, Suez Canal University, Ismailia, 41522, Egypt.
| | - Hamza M Eid
- Department of Microbiology, Faculty of Veterinary Medicine, Ain Shams University, Cairo, 11566, Egypt
| | - Saad Alghamdi
- Department of Clinical Laboratory Sciences, Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, 24381, Saudi Arabia
| | - Hanaa Ghabban
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk, 71491, Saudi Arabia
| | - Roba Alatawy
- Medical Microbiology Department, School of Medicine, University of Tabuk, Tabuk, 71491, Saudi Arabia
| | - Enas A Almanzalawi
- Department of Biological Sciences, Faculty of Sciences, King Abdulaziz University, Jeddah, 21589, Saudi Arabia
| | - Tahani M Alqahtani
- Department of Biological Sciences, Faculty of Sciences, King Abdulaziz University, Jeddah, 21589, Saudi Arabia
| | - Sabreen G Elfouly
- Department of Bacteriology, Animal Health Research Institute, Port-Said branch, Port Said, 42511, Egypt
| | - Gihan M Mohammed
- Department of Bacteriology, Animal Health Research Institute, Port-Said branch, Port Said, 42511, Egypt
| | - Helal F Hetta
- Department of Medical Microbiology and Immunology, Faculty of Medicine, Assiut University, Assiut, 71515, Egypt
| | - Reham M El-Tarabili
- Department of Bacteriology, Immunology and Mycology, Faculty of Veterinary Medicine, Suez Canal University, Ismailia, 41522, Egypt
| |
Collapse
|
3
|
Ngom SI, Maski S, Rached B, Chouati T, Oliveira Correia L, Juste C, Meylheuc T, Henrissat B, El Fahime E, Amar M, Béra-Maillet C. Exploring the hemicellulolytic properties and safety of Bacillus paralicheniformis as stepping stone in the use of new fibrolytic beneficial microbes. Sci Rep 2023; 13:22785. [PMID: 38129471 PMCID: PMC10740013 DOI: 10.1038/s41598-023-49724-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Accepted: 12/11/2023] [Indexed: 12/23/2023] Open
Abstract
Bacillus strains from the Moroccan Coordinated Collections of Microorganisms (CCMM) were characterised and tested for fibrolytic function and safety properties that would be beneficial for maintaining intestinal homeostasis, and recommend beneficial microbes in the field of health promotion research. Forty strains were investigated for their fibrolytic activities towards complex purified polysaccharides and natural fibres representative of dietary fibres (DFs) entering the colon for digestion. We demonstrated hemicellulolytic activities for nine strains of Bacillus aerius, re-identified as Bacillus paralicheniformis and Bacillus licheniformis, using xylan, xyloglucan or lichenan as purified polysaccharides, and orange, apple and carrot natural fibres, with strain- and substrate-dependent production of glycoside hydrolases (GHs). Our combined methods, based on enzymatic assays, secretome, and genome analyses, highlighted the hemicellulolytic activities of B. paralicheniformis and the secretion of specific glycoside hydrolases, in particular xylanases, compared to B. licheniformis. Genomic features of these strains revealed a complete set of GH genes dedicated to the degradation of various polysaccharides from DFs, including cellulose, hemicellulose and pectin, which may confer on the strains the ability to digest a variety of DFs. Preliminary experiments on the safety and immunomodulatory properties of B. paralicheniformis fibrolytic strains were evaluated in light of applications as beneficial microbes' candidates for health improvement. B. paralicheniformis CCMM B969 was therefore proposed as a new fibrolytic beneficial microbe candidate.
Collapse
Affiliation(s)
- Serigne Inssa Ngom
- Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, 78350, Jouy-en-Josas, France
| | - Soufiane Maski
- Laboratoire de Microbiologie et Biologie Moléculaire, Centre National pour la Recherche Scientifique et Technique, Rabat, Morocco
- Département de Biologie, Faculté des Sciences, Université Mohammed V, Rabat, Morocco
| | - Bahia Rached
- Collections Coordonnées Marocaines de Microorganismes, Centre National pour la Recherche Scientifique et Technique, Rabat, Morocco
- Plateforme Génomique Fonctionnelle, Unité d'Appui Technique à la Recherche Scientifique, Centre National pour la Recherche Scientifique et Technique, Rabat, Morocco
- Laboratoire de Chimie-Physique et Biotechnologies des Biomolécules et Matériaux/Equipe Microbiologie Biomolécules et Biotechnologies, Faculté des Sciences et Techniques, Mohammedia, Morocco
| | - Taha Chouati
- Collections Coordonnées Marocaines de Microorganismes, Centre National pour la Recherche Scientifique et Technique, Rabat, Morocco
- Plateforme Génomique Fonctionnelle, Unité d'Appui Technique à la Recherche Scientifique, Centre National pour la Recherche Scientifique et Technique, Rabat, Morocco
- Biologie médicale, Pathologie humaine et Expérimentale et Environnement, Faculté de Médecine et de pharmacie de Rabat, Rabat, Morocco
| | - Lydie Oliveira Correia
- Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, PAPPSO, 78350, Jouy-en-Josas, France
| | - Catherine Juste
- Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, 78350, Jouy-en-Josas, France
| | - Thierry Meylheuc
- Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, MIMA2, 78350, Jouy en Josas, France
| | - Bernard Henrissat
- Architecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique, Aix-Marseille Université, 13288, Marseille, France
- Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia
- Department of Biotechnology and Biomedicine, Technical University of Denmark, Kgs. Lyngby, Denmark
| | - Elmostafa El Fahime
- Plateforme Génomique Fonctionnelle, Unité d'Appui Technique à la Recherche Scientifique, Centre National pour la Recherche Scientifique et Technique, Rabat, Morocco
- Biologie médicale, Pathologie humaine et Expérimentale et Environnement, Faculté de Médecine et de pharmacie de Rabat, Rabat, Morocco
| | - Mohamed Amar
- Laboratoire de Microbiologie et Biologie Moléculaire, Centre National pour la Recherche Scientifique et Technique, Rabat, Morocco
- Collections Coordonnées Marocaines de Microorganismes, Centre National pour la Recherche Scientifique et Technique, Rabat, Morocco
| | - Christel Béra-Maillet
- Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, 78350, Jouy-en-Josas, France.
- Laboratoire de Microbiologie et Biologie Moléculaire, Centre National pour la Recherche Scientifique et Technique, Rabat, Morocco.
| |
Collapse
|
4
|
Noppakuadrittidej P, Charlermroj R, Makornwattana M, Kaew-Amdee S, Waditee-Sirisattha R, Vilaivan T, Praneenararat T, Karoonuthaisiri N. Development of peptide nucleic acid-based bead array technology for Bacillus cereus detection. Sci Rep 2023; 13:12482. [PMID: 37528159 PMCID: PMC10393979 DOI: 10.1038/s41598-023-38877-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Accepted: 07/17/2023] [Indexed: 08/03/2023] Open
Abstract
Numerous novel methods to detect foodborne pathogens have been extensively developed to ensure food safety. Among the important foodborne bacteria, Bacillus cereus was identified as a pathogen of concern that causes various food illnesses, leading to interest in developing effective detection methods for this pathogen. Although a standard method based on culturing and biochemical confirmative test is available, it is time- and labor-intensive. Alternative PCR-based methods have been developed but lack high-throughput capacity and ease of use. This study, therefore, attempts to develop a robust method for B. cereus detection by leveraging the highly specific pyrrolidinyl peptide nucleic acids (PNAs) as probes for a bead array method with multiplex and high-throughput capacity. In this study, PNAs bearing prolyl-2-aminocyclopentanecarboxylic acid (ACPC) backbone with groEL, motB, and 16S rRNA sequences were covalently coupled with three sets of fluorescently barcoded beads to detect the three B. cereus genes. The developed acpcPNA-based bead array exhibited good selectivity where only signals were detectable in the presence of B. cereus, but not for other species. The sensitivity of this acpcPNA-based bead assay in detecting genomic DNA was found to be 0.038, 0.183 and 0.179 ng for groEL, motB and 16S rRNA, respectively. This performance was clearly superior to its DNA counterpart, hence confirming much stronger binding strength of acpcPNA over DNA. The robustness of the developed method was further demonstrated by testing artificially spiked milk and pickled mustard greens with minimal interference from food metrices. Hence, this proof-of-concept acpcPNA-based bead array method has been proven to serve as an effective alternative nucleic acid-based method for foodborne pathogens.
Collapse
Affiliation(s)
- Prae Noppakuadrittidej
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Khlong Luang, Pathum Thani, Thailand, 12120
- Department of Chemistry, Faculty of Science, Chulalongkorn University, Phayathai Rd., Pathumwan, Bangkok, Thailand, 10330
- Program in Biotechnology, Faculty of Science, Chulalongkorn University, Phayathai Rd., Pathumwan, Bangkok, Thailand, 10330
| | - Ratthaphol Charlermroj
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Khlong Luang, Pathum Thani, Thailand, 12120
| | - Manlika Makornwattana
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Khlong Luang, Pathum Thani, Thailand, 12120
| | - Sudtida Kaew-Amdee
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Khlong Luang, Pathum Thani, Thailand, 12120
| | - Rungaroon Waditee-Sirisattha
- Department of Microbiology, Faculty of Science, Chulalongkorn University, Phayathai Rd., Pathumwan, Bangkok, Thailand, 10330
| | - Tirayut Vilaivan
- Department of Chemistry, Faculty of Science, Chulalongkorn University, Phayathai Rd., Pathumwan, Bangkok, Thailand, 10330
- Organic Synthesis Research Unit, Department of Chemistry, Faculty of Science, Chulalongkorn University, Phayathai Rd., Pathumwan, Bangkok, Thailand, 10330
| | - Thanit Praneenararat
- Department of Chemistry, Faculty of Science, Chulalongkorn University, Phayathai Rd., Pathumwan, Bangkok, Thailand, 10330.
- International Joint Research Center on Food Security, Khlong Luang, Pathum Thani, Thailand, 12121.
| | - Nitsara Karoonuthaisiri
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Khlong Luang, Pathum Thani, Thailand, 12120.
- International Joint Research Center on Food Security, Khlong Luang, Pathum Thani, Thailand, 12121.
- Institute for Global Food Security, Queen's University Belfast, Belfast, UK.
| |
Collapse
|
5
|
Cruz-Facundo IM, Adame-Gómez R, Castro-Alarcón N, Toribio-Jiménez J, Castro-Coronel Y, Santiago-Dionisio MC, Leyva-Vázquez MA, Tafolla-Venegas D, Ramírez-Peralta A. Enterotoxigenic profiles and submerged and interface biofilms in Bacillus cereus group isolates from foods. Rev Argent Microbiol 2023; 55:262-271. [PMID: 37019800 DOI: 10.1016/j.ram.2023.01.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 01/24/2023] [Accepted: 01/26/2023] [Indexed: 04/05/2023] Open
Abstract
Biofilm formation by Bacillus cereus strains is now recognized as a systematic contamination mechanism in foods; the aim of this study was to evaluate the production of submerged and interface biofilms in strains of B. cereus group in different materials, the effect of dextrose, motility, the presence of genes related to biofilms and the enterotoxigenic profile of the strains. We determine biofilm production by safranin assay, motility on semi-solid medium, toxin gene profiling and genes related to biofilm production by PCR in B. cereus group isolated from food. In this study, we observe strains used a higher production of biofilms in PVC; in the BHI broth, no submerged biofilms were found compared to phenol red broth and phenol red broth supplemented with dextrose; no strains with the ces gene were found, the enterotoxin profile was the most common the profile that includes genes for the three enterotoxins. We observed a different distribution of tasA and sipW with the origin of isolation of the strain, being more frequent in the strains isolated from eggshell. The production and type of biofilms are differential according to the type of material and culture medium used.
Collapse
Affiliation(s)
- Itzel-Maralhi Cruz-Facundo
- Universidad Autónoma de Guerrero, Laboratorio de Investigación en Patometabolismo Microbiano, Facultad de Ciencias Químico Biológicas, Chilpancingo de los Bravo, Guerrero 39070, Mexico
| | - Roberto Adame-Gómez
- Universidad Autónoma de Guerrero, Laboratorio de Investigación en Patometabolismo Microbiano, Facultad de Ciencias Químico Biológicas, Chilpancingo de los Bravo, Guerrero 39070, Mexico
| | - Natividad Castro-Alarcón
- Universidad Autónoma de Guerrero, Laboratorio de Investigación en Microbiología, Facultad de Ciencias Químico Biológicas, Chilpancingo de los Bravo, Guerrero CP39070, Mexico
| | - Jeiry Toribio-Jiménez
- Universidad Autónoma de Guerrero, Laboratorio de Investigación en Microbiología Molecular y Biotecnología Ambiental, Facultad de Ciencias Químico Biológicas, Chilpancingo de los Bravo, Guerrero CP39070, Mexico
| | - Yaneth Castro-Coronel
- Universidad Autónoma de Guerrero, Laboratorio de Investigación en Citopatología e Histoquímica, Facultad de Ciencias Químico Biológicas, Chilpancingo de los Bravo, Guerrero CP39070, Mexico
| | - María-Cristina Santiago-Dionisio
- Universidad Autónoma de Guerrero, Laboratorio de Investigación en Análisis Microbiológicos, Facultad de Ciencias Químico Biológicas, Chilpancingo de los Bravo, Guerrero CP39070, Mexico
| | - Marco-Antonio Leyva-Vázquez
- Universidad Autónoma de Guerrero, Laboratorio de Investigación en Biomedicina Molecular, Facultad de Ciencias Químico Biológicas, Chilpancingo de los Bravo, Guerrero CP39070, Mexico
| | - David Tafolla-Venegas
- Universidad Michoacana de San Nicolás de Hidalgo, Facultad de Biología, Laboratorio de Parasitología, Morelia, Michoacan 58004, Mexico
| | - Arturo Ramírez-Peralta
- Universidad Autónoma de Guerrero, Laboratorio de Investigación en Patometabolismo Microbiano, Facultad de Ciencias Químico Biológicas, Chilpancingo de los Bravo, Guerrero 39070, Mexico.
| |
Collapse
|
6
|
Costa LVD, Miranda RVDSLD, Reis CMFD, Andrade JMD, Cruz FV, Frazão AM, Fonseca ELD, Ramos JN, Brandão MLL, Vieira VV. MALDI-TOF MS database expansion for identification of Bacillus and related genera isolated from a pharmaceutical facility. J Microbiol Methods 2022; 203:106625. [PMID: 36403787 DOI: 10.1016/j.mimet.2022.106625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2022] [Revised: 11/14/2022] [Accepted: 11/14/2022] [Indexed: 11/18/2022]
Abstract
Bacillus and related genera are among the main bacterial groups isolated from pharmaceutical production areas. The identification of Bacillus species and related genera by classical methods is particularly difficult, due to similarities between closely related species. The Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) is one of the most promising techniques for chemotaxonomic characterization of microorganisms, being an alternative to genotypic methods. This study aimed to identify Bacillus strains and related genera isolated from immunobiological production areas by phylogenetic analysis of housekeeping genes and expand the database associated with MALDI-TOF MS to improve their identification. In a previous study, 97 aerobic endospore-forming bacteria isolated from a pharmaceutical facility were analyzed by MALDI-TOF MS and 16S rRNA gene full-length sequencing. All strains were identified as Bacillus and related genera by the latest methodology. Among the 97 strains, 22 were unidentified and 2 strains were misidentified by MALDI-TOF MS. In the present study, these 24 strains were subjected to 16S rRNA gene phylogenetic analysis. Strains not identified at species level by this methodology were submitted to rpoB gene phylogenetic analysis. After identifying the strains, 19 of the 24 strains were incubated for 24, 48, and 72 h on Tryptic Soy Agar and Sheep Blood Agar and subjected to analysis by MALDI-TOF MS. A SuperSpectrum for each strain was created and entered into the equipment database. Finally, the 24 strains were again submitted to proteomic analysis by MALDI-TOF MS, and, at this time, all were correctly identified. The genotypic identification of in-house isolated strains and the introduction of these spectra in MALDI-TOF MS, in order to obtain a customized database, proved to be an extremely effective tool in the identification of Bacillus and related genera from pharmaceutical industry origin.
Collapse
Affiliation(s)
- Luciana Veloso da Costa
- Fundação Oswaldo Cruz, Instituto de Tecnologia em Imunobiológicos (Bio-Manguinhos), Microbiological Control Laboratory, Brazil.
| | | | | | - Joyce Modesto de Andrade
- Fundação Oswaldo Cruz, Instituto de Tecnologia em Imunobiológicos (Bio-Manguinhos), Microbiological Control Laboratory, Brazil
| | - Fernanda Ventura Cruz
- Fundação Oswaldo Cruz, Instituto de Tecnologia em Imunobiológicos (Bio-Manguinhos), Microbiological Control Laboratory, Brazil
| | - Adriana Marques Frazão
- Fundação Oswaldo Cruz, Instituto de Tecnologia em Imunobiológicos (Bio-Manguinhos), Microbiological Control Laboratory, Brazil
| | - Erica Louro da Fonseca
- Fundação Oswaldo Cruz, Instituto de Tecnologia em Imunobiológicos (Bio-Manguinhos), Microbiological Control Laboratory, Brazil
| | - Juliana Nunes Ramos
- Fundação Oswaldo Cruz, Instituto Oswaldo Cruz (IOC), Interdisciplinary Medical Research Laboratory, Brazil
| | - Marcelo Luiz Lima Brandão
- Fundação Oswaldo Cruz, Instituto de Tecnologia em Imunobiológicos (Bio-Manguinhos), Microbiological Control Laboratory, Brazil
| | - Verônica Viana Vieira
- Fundação Oswaldo Cruz, Instituto Oswaldo Cruz (IOC), Interdisciplinary Medical Research Laboratory, Brazil
| |
Collapse
|
7
|
Zhan J, Han Y, Xu S, Wang X, Guo X. Succession and change of potential pathogens in the co-composting of rural sewage sludge and food waste. WASTE MANAGEMENT (NEW YORK, N.Y.) 2022; 149:248-258. [PMID: 35760013 DOI: 10.1016/j.wasman.2022.06.028] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Revised: 06/15/2022] [Accepted: 06/18/2022] [Indexed: 06/15/2023]
Abstract
Composting is an effective way to prevent and control the spread of pathogenic microorganisms which could put potential risk to humans and environment, from rural solid waste, especially sewage sludge and food waste. In the study, we aim to analyze the changes of pathogenic bacteria during the co-composting of rural sewage sludge and food waste. The results showed that only 27 pathogenic bacteria were detected after composting, compared to 50 pathogenic bacteria in the raw mixed pile. About 74% of pathogen concentrations dropped below 1000 copies/g after composting. Lactobacillus, Bacillus, Paenibacillus and Comamonas were the core pathogenic bacteria in the compost, of which concentrations were all significantly lower than that in the raw mixed pile at the end of composting. The concentration of Lactobacillus decreased to 3.03 × 103 copies/g compared to 0 d with 1.25 × 109 copies/g by the end of the composting, while that of Bacillus, Paenibacillus and Comamonas decreased to 2.77 × 104 copies/g, 2.13 × 104 copies/g and 3.38 × 102 copies/g, respectively, with 1.26 × 107 copies/g, 4.71 × 106 copies/g, 1.69 × 108 copies/g on 0 d. Redundancy analysis (RDA) indicated that physicochemical factors and substances could affect the changes of pathogenic bacteria during composting, while temperature was the key influencing factor. In addition, certain potential pathogenic bacteria, such as Bacteroides-Bifidobacterium, show statistically strong and significant co-occurrence during composting, which may increase the risk of multiple infections and also influence their distribution. These findings provide a theoretical reference for biosafety prevention and control in the treatment and disposal of rural solid waste.
Collapse
Affiliation(s)
- Jun Zhan
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Yunping Han
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Su Xu
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Xiao Wang
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Xuesong Guo
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China.
| |
Collapse
|
8
|
Castulo-Arcos DA, Adame-Gómez R, Castro-Alarcón N, Galán-Luciano A, Santiago Dionisio MC, Leyva-Vázquez MA, Perez-Olais JH, Toribio-Jiménez J, Ramirez-Peralta A. Genetic diversity of enterotoxigenic Bacillus cereus strains in coriander in southwestern Mexico. PeerJ 2022; 10:e13667. [PMID: 35795180 PMCID: PMC9252179 DOI: 10.7717/peerj.13667] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Accepted: 06/10/2022] [Indexed: 01/17/2023] Open
Abstract
Background Coriander, like other leafy green vegetables, is available all year round and is commonly consumed raw in Mexico as in other countries in the preparation of street or homemade food. Bacillus cereus (B. cereus) is a microorganism that can reach coriander because it is usually found in the soil and in some regions the vegetables are irrigated with polluted water. Therefore, the aim of this study was to determinate the presence of B. cereus in coriander used for human consumption in southwestern Mexico and determine the toxigenic profile, biofilm production, genes associated with the production of biofilms, sporulation rates, enzymatic profile, psychotropic properties, and genetic diversity of B. cereus. Methods Fresh coriander samples were collected from several vegetable retailers in different markets, microbiological analysis was performed. Molecular identification, genes related to the production of biofilm, and toxin gene profiling of B. cereus isolates were determined by PCR. The biofilm formation was measured by performing a crystal violet assay. The genetic diversity of B. cereus strains was determined by PCR of repetitive elements using oligonucleotide (GTG) 5. Results We found a frequency of B. cereus in vegetables was 20% (13/65). In this study, no strains with genes for the HBL toxin were found. In the case of genes related to biofilms, the frequency was low for sipW [5.8%, (1/17)] and tasA [11.7%, (2/17)]. B. cereus strains produce a low amount of biofilm with sporulation rates around 80%. As for genetic diversity, we observed that strains isolated from the same market, but different vegetable retailers are grouped into clusters. In the coriander marketed in southwestern Mexico, were found B. cereus strains with genes associated with the production of diarrheal toxins. Together, these results show actual information about the state of art of B. cereus strains circulating in the southwestern of Mexico.
Collapse
Affiliation(s)
- Daniel Alexander Castulo-Arcos
- Laboratorio de Investigación en Patometabolismo Microbiano/Facultad de Ciencias Químico Biológicas, Universidad Autonoma de Guerrero, Chilpancingo, Guerrero, Mexico
| | - Roberto Adame-Gómez
- Laboratorio de Investigación en Patometabolismo Microbiano/Facultad de Ciencias Químico Biológicas, Universidad Autonoma de Guerrero, Chilpancingo, Guerrero, Mexico
| | - Natividad Castro-Alarcón
- Laboratorio de Investigación en Microbiología/Facultad de Ciencias Químico Biológicas, Universidad Autonoma de Guerrero, Chilpancingo, Guerrero, México
| | - Aketzalli Galán-Luciano
- Laboratorio de Investigación en Patometabolismo Microbiano/Facultad de Ciencias Químico Biológicas, Universidad Autonoma de Guerrero, Chilpancingo, Guerrero, Mexico
| | - María Cristina Santiago Dionisio
- Laboratorio de Investigación en Análisis Microbiológicos/Facultad de Ciencias Químico Biológicas, Universidad Autonoma de Guerrero, Chilpancingo, Guerrero, México
| | - Marco A. Leyva-Vázquez
- Laboratorio de Investigación en Biomedicina Molecular/Facultad de Ciencias Químico Biológicas, Universidad Autonoma de Guerrero, Chilpancingo, Guerrero, México
| | - Jose-Humberto Perez-Olais
- Laboratorio de Biología Celular/Unidad Cuajimalpa, Universidad Autonoma Metropolitana, Ciudad de México, Ciudad de México, México
| | - Jeiry Toribio-Jiménez
- Laboratorio de Investigacion en Microbiologia Molecular y Biotecnologia Ambiental/Facultad de Ciencias Químico Biológicas, Universidad Autonoma de Guerrero, Chilpancingo, Guerrero, Mexico
| | - Arturo Ramirez-Peralta
- Laboratorio de Investigación en Patometabolismo Microbiano/Facultad de Ciencias Químico Biológicas, Universidad Autonoma de Guerrero, Chilpancingo, Guerrero, Mexico
| |
Collapse
|
9
|
Busch A, Schotte U, Jeßberger N, Frentzel H, Plötz M, Abdulmawjood A. Establishment and Validation of a Two-Step LAMP Assay for Detection of Bacillus cereus-Group Isolates in Food and Their Possibility of Non-haemolytic Enterotoxin Production. Front Microbiol 2022; 13:930648. [PMID: 35756039 PMCID: PMC9218561 DOI: 10.3389/fmicb.2022.930648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 05/19/2022] [Indexed: 11/13/2022] Open
Abstract
The closely related members of the Bacillus cereus-group can mainly only be differentiated by whole genome sequencing. Among them, there are potentially toxin-producing bacteria. When consumed with food, these can cause vomiting or diarrhea and abdominal cramps. To date, although no EU-wide threshold exists, a bacterial count of 105 CFU/g can be regarded as critical. Specific and rapid detection of the bacteria is difficult due to their close relationship, and no loop-mediated isothermal amplification (LAMP) assay has been developed so far to detect potentially toxin-producing members of the B. cereus-group. Aim of this study was to develop a LAMP method to detect critical cell counts specifically and rapidly of potentially non-haemolytic enterotoxin (NHE)-producing cells of this group. A two-step LAMP assay was developed. First, the target sequence groEL was used to determine the representatives of the B. cereus-group. Second, since bacteria in which nheB is present are basically capable of producing enterotoxins, this gene was chosen for detection. The specificity of the developed assay was 100% for B. cereus-group isolates and 93.7% for the detection of nheB. The analytical sensitivity was 0.1 pg DNA/μl. Using simplified DNA extraction by boiling, cell-based sensitivity was determined. Targeting groEL and nheB, 11.35-27.05 CFU/reaction and 11.35-270.5 CFU/reaction were detectable, respectively. Artificially contaminated samples were investigated to prove the application in foods. Direct detection of the critical value of B. cereus-group cells was possible in 83.3% of samples and detecting the toxin-gene 50% thereof. After a 6-h incubation period, the detection rate increased to 100 and 91.7%, respectively. Additionally, 100 natively contaminated food samples were tested, also quantitatively and culturally. Samples with relevant contamination levels were reliably detected using groEL-LAMP. After a 6-h incubation period, isolates bearing the toxin gene nheB could also be reliably detected. In addition, colony material was boiled and used as a LAMP template for simple detection. Specificity for the B. cereus-group was 100 and 93.22% detecting nheB. The study demonstrated that screening of food samples with the groEL/nheB-LAMP assay can be performed within 1 day, making it possible to detect critical levels of potentially NHE-toxin-producing cells of the B. cereus-group.
Collapse
Affiliation(s)
- Annemarie Busch
- Institute for Food Quality and Food Safety, University of Veterinary Medicine Hannover, Hanover, Germany
| | - Ulrich Schotte
- Department A (Veterinary Medicine), Central Institute of the Bundeswehr Medical Service Kiel, Kronshagen, Germany
| | - Nadja Jeßberger
- Institute for Food Quality and Food Safety, University of Veterinary Medicine Hannover, Hanover, Germany
| | - Hendrik Frentzel
- Unit Bacterial Toxins, Food Service, Department of Biological Safety, German Federal Institute for Risk Assessment, Berlin, Germany
| | - Madeleine Plötz
- Institute for Food Quality and Food Safety, University of Veterinary Medicine Hannover, Hanover, Germany
| | - Amir Abdulmawjood
- Institute for Food Quality and Food Safety, University of Veterinary Medicine Hannover, Hanover, Germany
| |
Collapse
|
10
|
Cruz-Facundo IM, Adame-Gómez R, Vences-Velázquez A, Rodríguez-Bataz E, Muñoz-Barrios S, Pérez-Oláis JH, Ramírez-Peralta A. Bacillus Cereus in Eggshell: Enterotoxigenic Profiles and Biofilm Production. BRAZILIAN JOURNAL OF POULTRY SCIENCE 2022. [DOI: 10.1590/1806-9061-2021-1535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
11
|
Cheng LW, Rao S, Poudyal S, Wang PC, Chen SC. Genotype and virulence gene analyses of Bacillus cereus group clinical isolates from the Chinese softshell turtle (Pelodiscus sinensis) in Taiwan. JOURNAL OF FISH DISEASES 2021; 44:1515-1529. [PMID: 34125451 DOI: 10.1111/jfd.13473] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Revised: 05/27/2021] [Accepted: 05/28/2021] [Indexed: 06/12/2023]
Abstract
Chinese softshell turtles (Pelodiscus sinensis) (CST) are susceptible to infections by bacteria belonging to the Bacillus cereus group (Bcg). Bcg includes several closely related species, two of which, B. cereus and B. thuringiensis, are pathogens of aquatic animals or insects. In the present study, we collected 57 Bcg isolates obtained from diseased CST from 2016 to 2019 in Kaohsiung and Pingtung, the areas with the most CST farms in Taiwan. All isolates were divided into four genotypes with two restriction enzymes, SmaI and NotI, by pulsed-field gel electrophoresis and enterobacterial repetitive intergenic consensus-polymerase chain reaction (ERIC-PCR). Representative isolates from each genotype were subjected to phylogenetic tree analysis using 16S rDNA and pyruvate carboxylase genes as phylogenetic markers, and these CST isolates appeared in different clades. PCR was performed targeting six selected virulence genes, four of which were detected in CST isolates, including cytotoxin K (1/57), hblC of the haemolysin BL complex (46/57), nheA of the non-haemolytic enterotoxin complex (52/57) and enterotoxin FM (57/57), whereas cereulide synthetase and cereulide peptide synthase-like genes were not detected in any isolates.
Collapse
Affiliation(s)
- Li-Wu Cheng
- Department of Veterinary Medicine, College of Veterinary Medicine, National Pingtung University of Science and Technology, Pingtung, Taiwan
- College of Veterinary Medicine, Southern Taiwan Fish Diseases Research Centre, National Pingtung University of Science and Technology, Pingtung, Taiwan
| | - Shreesha Rao
- Department of Veterinary Medicine, College of Veterinary Medicine, National Pingtung University of Science and Technology, Pingtung, Taiwan
| | - Sayuj Poudyal
- International Degree Program of Ornamental Fish Technology and Aquatic Animal Health, International College, National Pingtung University of Science and Technology, Pingtung, Taiwan
| | - Pei-Chi Wang
- Department of Veterinary Medicine, College of Veterinary Medicine, National Pingtung University of Science and Technology, Pingtung, Taiwan
- College of Veterinary Medicine, Southern Taiwan Fish Diseases Research Centre, National Pingtung University of Science and Technology, Pingtung, Taiwan
- International Degree Program of Ornamental Fish Technology and Aquatic Animal Health, International College, National Pingtung University of Science and Technology, Pingtung, Taiwan
- Research Centre for Fish Vaccine and Diseases, College of Veterinary Medicine, National Pingtung University of Science and Technology, Pingtung, Taiwan
| | - Shih-Chu Chen
- Department of Veterinary Medicine, College of Veterinary Medicine, National Pingtung University of Science and Technology, Pingtung, Taiwan
- College of Veterinary Medicine, Southern Taiwan Fish Diseases Research Centre, National Pingtung University of Science and Technology, Pingtung, Taiwan
- International Degree Program of Ornamental Fish Technology and Aquatic Animal Health, International College, National Pingtung University of Science and Technology, Pingtung, Taiwan
- Research Centre for Fish Vaccine and Diseases, College of Veterinary Medicine, National Pingtung University of Science and Technology, Pingtung, Taiwan
- Research Centre for Animal Biologics, National Pingtung University of Science and Technology, Pingtung, Taiwan
| |
Collapse
|
12
|
Das S, Vishakha K, Banerjee S, Mondal S, Ganguli A. Antibacterial and antibiofilm effectiveness of bioactive packaging materials from edible sodium alginate and vanillin: Assessment on lettuce. J FOOD PROCESS PRES 2021. [DOI: 10.1111/jfpp.15668] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Shatabdi Das
- Department of Microbiology Techno India University Kolkata India
| | - Kumari Vishakha
- Department of Microbiology Techno India University Kolkata India
| | | | | | - Arnab Ganguli
- Department of Microbiology Techno India University Kolkata India
| |
Collapse
|
13
|
Hammad AM, Eltahan A, Khalifa E, Abbas NH, Shimamoto T. Toxigenic Potential of Bacillus cereus Strains Isolated from Retail Dairy Products in Egypt. Foodborne Pathog Dis 2021; 18:655-660. [PMID: 34042521 DOI: 10.1089/fpd.2020.2920] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Little is known about the virulence in Bacillus cereus strains isolated from retail dairy products in the Middle East and particularly from Egypt. In this study, the occurrence of B. cereus in 290 samples of dairy products (raw milk, Ras cheese, pasteurized extended shelf life [ESL] milk) collected from retail shops was investigated. The potential of 126 selected isolates of B. cereus to possess genes encoding nonhemolytic enterotoxin, hemolysin BL, and cytotoxin K (cytK), and to grow at 7°C was verified. The highest occurrence of B. cereus was found in raw milk (85%, 85/100) followed by Ras cheese (10%, 10/100) and ESL milk samples (8.8%, 8/90). A large proportion of the B. cereus isolates from raw milk (48.9%, 48/99) and Ras cheese (71.4%, 10/14) had at least one complete set of toxin genes (nhe or hbl). Enterotoxin genes, nheA, nheB, nheC, hblA, hblD, and hblC, were detected in 38.4% (5/13), 53.8% (7/13), 61.5% (8/13), 46.1% (6/13), 46.1% (6/13), and 23.1% (3/13) of ESL milk isolates, respectively. cytK was identified in 42.4% (42/99), 50% (7/14), and 46.2% (6/13) of raw milk, Ras cheese, and ESL milk isolates, respectively. The psychrotrophic ability was observed in 22.2% and 15.3% of isolates recovered from raw milk and ESL milk, respectively. The toxigenic potential of B. cereus strains described in this study may pose a health risk to the consumer and, therefore, the presence of these bacteria in retail dairy products should be monitored to ensure consumers' safety.
Collapse
Affiliation(s)
- Ahmed M Hammad
- Department of Food Microbiology and Hygiene, Faculty of Veterinary Medicine, University of Sadat City, Sadat City, Egypt
| | - Amira Eltahan
- Department of Food Microbiology and Hygiene, Faculty of Veterinary Medicine, University of Sadat City, Sadat City, Egypt
| | - Eman Khalifa
- Department of Microbiology, Faculty of Veterinary Medicine, Matrouh University, Matrouh, Egypt
| | - Nasser H Abbas
- Department of Environmental Biotechnology, Genetic Engineering and Biotechnology Research Institute, University of Sadat City, Sadat City, Egypt
| | - Tadashi Shimamoto
- Laboratory of Food Microbiology and Hygiene, Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan
| |
Collapse
|
14
|
Detection of spore forming Paenibacillus macerans in raw milk. J Microbiol Methods 2020; 177:106048. [PMID: 32890571 DOI: 10.1016/j.mimet.2020.106048] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 08/17/2020] [Accepted: 08/17/2020] [Indexed: 11/22/2022]
Abstract
Paenibacillus macerans can cause spoilage of milk during extended storage. However, the natural milk microbiota interferes with the enumeration of Paenibacillus species in raw milk. In this study, a qualitative SYBR Green real-time PCR assay based on the groEL gene was developed for detecting P. macerans (PMassay) in raw milk and compared with one designed for total Paenibacillus detection (TPassay). The specificity of the PMassay was confirmed against a panel of dairy-related spore forming isolates. In the presence of background DNA substituted up to 95%, P. macerans DNA could still be detected by the PMassay although interference occurred as non-target DNA substitution increased. The PMassay was sensitive (detection limit of 2 log CFU/ml in milk) and specific as non-P. macerans isolates gave a Ct > 30. After enrichment of raw milk for 7 days at 37 °C in Reinforced Clostridial Medium with D-cycloserine (RCM-D) under anaerobiosis, Paenibacillus was detected in 10 of the 16 raw milk samples tested. Enrichment in RCM-D yielded about 0.5 to 5.8 log CFU/ml total Paenibacillus and 0.3 to 4.6 log CFU/ml P. macerans in the samples. The assay could be useful in commercial settings, allowing a sensitive detection of P. macerans.
Collapse
|
15
|
Roberto AG, Itzel-Maralhi CF, Lilia-Lizette GD, Yesenia RS, Abigail PV, Carlos OP, Maria-Cristina SD, Arturo RP. Biofilm Production by Enterotoxigenic Strains of Bacillus cereus in Different Materials and under Different Environmental Conditions. Microorganisms 2020; 8:microorganisms8071071. [PMID: 32709126 PMCID: PMC7409032 DOI: 10.3390/microorganisms8071071] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Revised: 07/15/2020] [Accepted: 07/15/2020] [Indexed: 11/16/2022] Open
Abstract
Foodborne illnesses, such as infections or food poisoning, can be caused by bacterial biofilms present in food matrices or machinery. The production of biofilms by several strains of Bacillus cereus on different materials under different culture conditions was determined, as well as the relationship of biofilms with motility, in addition to the enterotoxigenic profile and candidate genes that participate in the production of biofilms. Biofilm production of B. cereus strains was determined on five materials: glass, polystyrene, polyethylene, polyvinylchloride (PVC), PVC/glass; in three culture media: Phenol red broth, tryptic soy broth, and brain heart infusion broth; in two different temperatures (37 °C and 25 °C), and in two different oxygen conditions (oxygen and CO2 tension). Furthermore, the strains were molecularly characterized by end-point polymerase chain reaction. Motility was determined on semi-solid agar. The B. cereus strains in this study were mainly characterized as enterotoxigenic strains; statistically significant differences were found in the PVC material and biofilm production. Motility was positively associated with the production of biofilm in glass/PVC. The sipW and tasA genes were found in two strains. The results of this study are important in the food industry because the strains carry at least one enterotoxin gene and produce biofilms on different materials.
Collapse
Affiliation(s)
- Adame-Gómez Roberto
- Laboratorio de Investigación en Patometabolismo Microbiano, Universidad Autónoma de Guerrero, Guerrero 39074, Mexico; (A.-G.R.); (C.-F.I.-M.); (G.-D.L.-L.); (R.-S.Y.)
| | - Cruz-Facundo Itzel-Maralhi
- Laboratorio de Investigación en Patometabolismo Microbiano, Universidad Autónoma de Guerrero, Guerrero 39074, Mexico; (A.-G.R.); (C.-F.I.-M.); (G.-D.L.-L.); (R.-S.Y.)
| | - García-Díaz Lilia-Lizette
- Laboratorio de Investigación en Patometabolismo Microbiano, Universidad Autónoma de Guerrero, Guerrero 39074, Mexico; (A.-G.R.); (C.-F.I.-M.); (G.-D.L.-L.); (R.-S.Y.)
| | - Ramírez-Sandoval Yesenia
- Laboratorio de Investigación en Patometabolismo Microbiano, Universidad Autónoma de Guerrero, Guerrero 39074, Mexico; (A.-G.R.); (C.-F.I.-M.); (G.-D.L.-L.); (R.-S.Y.)
| | - Pérez-Valdespino Abigail
- Laboratorio de Ingeniería Genética, Departamento de Bioquímica, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Ciudad de México 11350, Mexico;
| | - Ortuño-Pineda Carlos
- Laboratorio de Ácidos Nucleicos y Proteínas, Universidad Autónoma de Guerrero, Guerrero 39074, Mexico;
| | | | - Ramírez-Peralta Arturo
- Laboratorio de Investigación en Patometabolismo Microbiano, Universidad Autónoma de Guerrero, Guerrero 39074, Mexico; (A.-G.R.); (C.-F.I.-M.); (G.-D.L.-L.); (R.-S.Y.)
- Correspondence:
| |
Collapse
|
16
|
Liu XY, Hu Q, Xu F, Ding SY, Zhu K. Characterization of Bacillus cereus in Dairy Products in China. Toxins (Basel) 2020; 12:E454. [PMID: 32674390 PMCID: PMC7405013 DOI: 10.3390/toxins12070454] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Revised: 06/30/2020] [Accepted: 07/09/2020] [Indexed: 02/07/2023] Open
Abstract
Bacillus cereus is a common and ubiquitous foodborne pathogen with an increasing prevalence rate in dairy products in China. High and unmet demands for such products, particularly milk, raise the risk of B. cereus associated contamination. The presence of B. cereus and its virulence factors in dairy products may cause food poisoning and other illnesses. Thus, this review first summarizes the epidemiological characteristics and analytical assays of B. cereus from dairy products in China, providing insights into the implementation of intervention strategies. In addition, the recent achievements on the cytotoxicity and mechanisms of B. cereus are also presented to shed light on the therapeutic options for B. cereus associated infections.
Collapse
Affiliation(s)
- Xiao-Ye Liu
- College of Veterinary Medicine, China Agricultural University, Beijing 100193, China; (X.-Y.L.); (Q.H.)
- Department of Mechanics and Engineering Science, College of Engineering, Academy for Advanced Interdisciplinary Studies, and Beijing Advanced Innovation Center for Engineering Science and Emerging Technology, College of Engineering, Peking University, Beijing 100871, China
| | - Qiao Hu
- College of Veterinary Medicine, China Agricultural University, Beijing 100193, China; (X.-Y.L.); (Q.H.)
- National Center for Veterinary Drug Safety Evaluation, College of Veterinary Medicine, China Agricultural University, Beijing 100193, China;
| | - Fei Xu
- National Feed Drug Reference Laboratory, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China;
| | - Shuang-Yang Ding
- National Center for Veterinary Drug Safety Evaluation, College of Veterinary Medicine, China Agricultural University, Beijing 100193, China;
| | - Kui Zhu
- College of Veterinary Medicine, China Agricultural University, Beijing 100193, China; (X.-Y.L.); (Q.H.)
- National Center for Veterinary Drug Safety Evaluation, College of Veterinary Medicine, China Agricultural University, Beijing 100193, China;
| |
Collapse
|
17
|
Phylogenetic Analysis of Bacillus cereus sensu lato Isolates from Commercial Bee Pollen Using tRNA Cys-PCR. Microorganisms 2020; 8:microorganisms8040524. [PMID: 32268545 PMCID: PMC7232370 DOI: 10.3390/microorganisms8040524] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 03/25/2020] [Accepted: 04/03/2020] [Indexed: 01/06/2023] Open
Abstract
Endospore-forming bacteria related to the Bacillus cereus group produce toxins that cause illnesses in organisms from invertebrates to mammals, including foodborne illnesses in humans. As commercial bee pollen can be contaminated with these bacteria, a comprehensive microbiological risk assessment of commercial bee pollen must be incorporated into the relevant regulatory requirements, including those that apply in Mexico. To facilitate detection of members of this group of bacteria, we have developed a PCR strategy that is based on the amplification of the single-copy tRNACys gene and specific genes associated with tRNACys to detect Bacillus cereus sensu lato (B. cereus s.l.). This tRNACys-PCR-based approach was used to examine commercial bee pollen for endospore-forming bacteria. Our analysis revealed that 3% of the endospore-forming colonies isolated from a commercial source of bee pollen were related to B. cereus s.l., and this result was corroborated by phylogenetic analysis, bacterial identification via MALDI-TOF MS, and detection of enterotoxin genes encoding the HBL and NHE complexes. The results show that the isolated colonies are closely related phylogenetically to B. cereus, B. thuringiensis, and B. bombysepticus. Our results indicate that the tRNACys-PCR, combined with other molecular tools, will be a useful approach for identifying B. cereus s.l. and will assist in controlling the spread of potential pathogens.
Collapse
|
18
|
Adame-Gómez R, Muñoz-Barrios S, Castro-Alarcón N, Leyva-Vázquez MA, Toribio-Jiménez J, Ramírez-Peralta A. Prevalence of the Strains of Bacillus cereus Group in Artisanal Mexican Cheese. Foodborne Pathog Dis 2020; 17:8-14. [DOI: 10.1089/fpd.2019.2673] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Affiliation(s)
- Roberto Adame-Gómez
- Laboratorio de Investigación en Patometabolismo Microbiano, Universidad Autónoma de Guerrero, Guerrero, México
| | - Salvador Muñoz-Barrios
- Laboratorio de Investigación en Inmunotoxigenómica, Universidad Autónoma de Guerrero, Guerrero, México
| | - Natividad Castro-Alarcón
- Laboratorio de Investigación en Microbiología, Universidad Autónoma de Guerrero, Guerrero, México
| | | | - Jeiry Toribio-Jiménez
- Laboratorio de Microbiología Molecular y Biotecnología Ambiental, Universidad Autónoma de Guerrero, Guerrero, México
| | - Arturo Ramírez-Peralta
- Laboratorio de Investigación en Patometabolismo Microbiano, Universidad Autónoma de Guerrero, Guerrero, México
| |
Collapse
|
19
|
A generic workflow for Single Locus Sequence Typing (SLST) design and subspecies characterization of microbiota. Sci Rep 2019; 9:19834. [PMID: 31882601 PMCID: PMC6934516 DOI: 10.1038/s41598-019-56065-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Accepted: 12/01/2019] [Indexed: 12/24/2022] Open
Abstract
We present TaxPhlAn, a new method and bioinformatics pipeline for design and analysis of single-locus sequence typing (SLST) markers to type and profile bacteria beyond the species-level in a complex microbial community background. TaxPhlAn can be applied to any group of phylogenetically-related bacteria, provided reference genomes are available. As TaxPhlAn requires the SLST targets identified to fit the phylogenetic pattern as determined through comprehensive evolutionary reconstruction of input genomes, TaxPhlAn allows for the identification and phylogenetic inference of new biodiversity. Here, we present a clinically relevant case study of high-resolution Staphylococcus profiling on skin of atopic dermatitis (AD) patients. We demonstrate that SLST enables profiling of cutaneous Staphylococcus members at (sub)species level and provides higher resolution than current 16S-based techniques. With the higher discriminative ability provided by our approach, we further show that the presence of Staphylococcus capitis on the skin together with Staphylococcus aureus associates with AD disease.
Collapse
|
20
|
Zhang J, DI B, Shan H, Liu J, Zhou Y, Chen H, Hu L, Wu X, Bai Z. Rapid Detection of Bacillus cereus Using Cross-Priming Amplification. J Food Prot 2019; 82:1744-1750. [PMID: 31536421 DOI: 10.4315/0362-028x.jfp-19-156] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Bacillus cereus is a spore-forming gastrointestinal pathogen that can cause life-threatening diseases. Here, a simple and effective assay to detect B. cereus was developed, using cross-priming amplification (CPA). Amplicons were detected using disposable cartridges that contained nucleic acid detection strips. The sensitivity of CPA assay for B. cereus was assessed using serial dilutions of genomic DNA, which indicated a detection limit of 3.6 × 101 CFU/mL. No cross-reactions were detected when genomic DNA extracted from 12 different B. cereus strains and 20 other bacterial foodborne strains were tested, suggesting that the assay is highly specific. Finally, we evaluated the practical applications of the CPA assay for the detection of B. cereus in 150 food samples and found that its sensitivity and specificity, compared with real-time PCR, were approximately 98.18 and 100%, respectively. In conclusion, CPA combined with nucleic acid detection strips is easy to perform, requires simple equipment, and offers highly specific and sensitive B. cereus detection.
Collapse
Affiliation(s)
- Jing Zhang
- Guangzhou Center for Disease Control and Prevention, 1 Qide Road, Guangzhou, 510440, Guangdong, People's Republic of China (ORCID: https://orcid.org/0000-0002-8377-2393 [Z.B.])
| | - Biao DI
- Guangzhou Center for Disease Control and Prevention, 1 Qide Road, Guangzhou, 510440, Guangdong, People's Republic of China (ORCID: https://orcid.org/0000-0002-8377-2393 [Z.B.])
| | - Hongbo Shan
- ADICON Clinical Laboratory, Inc., No. 398 Tianmushan Road, Hangzhou, 310023, Zhejiang, People's Republic of China
| | - Junhua Liu
- Guangzhou Center for Disease Control and Prevention, 1 Qide Road, Guangzhou, 510440, Guangdong, People's Republic of China (ORCID: https://orcid.org/0000-0002-8377-2393 [Z.B.])
| | - Yong Zhou
- Guangzhou Center for Disease Control and Prevention, 1 Qide Road, Guangzhou, 510440, Guangdong, People's Republic of China (ORCID: https://orcid.org/0000-0002-8377-2393 [Z.B.])
| | - Huiling Chen
- Guangzhou Center for Disease Control and Prevention, 1 Qide Road, Guangzhou, 510440, Guangdong, People's Republic of China (ORCID: https://orcid.org/0000-0002-8377-2393 [Z.B.])
| | - Lin Hu
- Ustar Biotechnologies (Hangzhou) Co., Ltd., 3766 Nanhuan Road, Hangzhou, 310012, Zhejiang, People's Republic of China
| | - Xinwei Wu
- Guangzhou Center for Disease Control and Prevention, 1 Qide Road, Guangzhou, 510440, Guangdong, People's Republic of China (ORCID: https://orcid.org/0000-0002-8377-2393 [Z.B.])
| | - Zhijun Bai
- Guangzhou Center for Disease Control and Prevention, 1 Qide Road, Guangzhou, 510440, Guangdong, People's Republic of China (ORCID: https://orcid.org/0000-0002-8377-2393 [Z.B.])
| |
Collapse
|
21
|
Wei S, Chelliah R, Park BJ, Kim SH, Forghani F, Cho MS, Park DS, Jin YG, Oh DH. Differentiation of Bacillus thuringiensis From Bacillus cereus Group Using a Unique Marker Based on Real-Time PCR. Front Microbiol 2019; 10:883. [PMID: 31114555 PMCID: PMC6503103 DOI: 10.3389/fmicb.2019.00883] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2018] [Accepted: 04/05/2019] [Indexed: 11/13/2022] Open
Abstract
The efficiency of a novel biomarker (the transcriptional regulator, XRE) was tested and evaluated in differentiating Bacillus thuringiensis from Bacillus cereus group species in environmental and spiked samples based on PCR and real-time PCR. Totally 120 strains, representing two bacterial groups, B. cereus group and non-Bacillus sp., were used to evaluate the performance of XRE and crystal protein (cry2, an existing biomarker). Further, three diverse samples (kimbap, lettuce, and spinach) were inoculated with B. thuringiensis and prominent biomarkers XRE and cry2 were used as targets. Direct analysis of the detection results for the pure cultures of B. cereus group wild-types, references and type strains revealed an accuracy rate of 97.5% targeting XRE, and 83.3% targeting cry2. The real-time PCR was constructed with a R 2-value of 0.993. For the artificially contaminated samples, a concentration of 103 CFU/g of B. thuringiensis in spiked food samples could be detected using real-time PCR targeting XRE. A good performance was obtained with XRE in discriminating B. thuringiensis from B. cereus groups, as well as detecting B. thuringiensis in spiked food samples with PCR or real-time PCR. Therefore, this real-time PCR targeting XRE can be used as a dependable and promising tool to identify B. thuringiensis in foods.
Collapse
Affiliation(s)
- Shuai Wei
- Department of Medical Biomaterials Engineering, Institute of Bioscience and Biotechnology, Kangwon National University, Chuncheon, South Korea
| | - Ramachandran Chelliah
- Department of Food Science and Biotechnology, Kangwon National University, Chuncheon, South Korea
| | - Byung-Jae Park
- Department of Food Science and Biotechnology, Kangwon National University, Chuncheon, South Korea
| | - Se-Hun Kim
- Department of Food Science and Biotechnology, Kangwon National University, Chuncheon, South Korea
| | - Fereidoun Forghani
- Center for Food Safety, College of Agricultural and Environmental Sciences, University of Georgia, Griffin, GA, United States
| | - Min Seok Cho
- Department of Agricultural Biotechnology, National Academy of Agricultural Science, Rural Development Administration, Jeonju, South Korea
| | - Dong-Suk Park
- Department of Agricultural Biotechnology, National Academy of Agricultural Science, Rural Development Administration, Jeonju, South Korea
| | - Yong-Guo Jin
- National Research and Development Center for Egg Processing, College of Food Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Deog-Hwan Oh
- Department of Food Science and Biotechnology, Kangwon National University, Chuncheon, South Korea
| |
Collapse
|
22
|
Selection of Optimized Reference Genes for qRT-PCR Normalization in Xanthomonas campestris pv. campestris Cultured in Different Media. Curr Microbiol 2019; 76:613-619. [PMID: 30863882 DOI: 10.1007/s00284-019-01667-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2018] [Accepted: 03/02/2019] [Indexed: 12/13/2022]
Abstract
Black rot is a cruciferous disease caused by Xanthomonas campestris pv. campestris (Xcc) and results in significant economic losses worldwide; therefore, elucidation of the mechanism of Xcc pathogenesis is urgently required. In this study, we aimed to select optimized reference genes to verify the relative quantification of virulent genes in Xcc. Xcc strains were cultured in three different media [basic medium (MMX), hrp-inducing medium (MMXC) and rich medium (NYG)] and the expression stability of five candidate genes [thymidylate synthase (thyA), DNA gyrase subunit B (gyrB), DNA-directed RNA polymerase subunit beta, glyceraldehyde-3-phosphate dehydrogenase and 16S ribosomal RNA (16S rRNA)] was evaluated using BestKeeper, GeNorm, and NormFinder software programs. Quantitative real-time PCR (qRT-PCR) analysis confirmed that two Xcc effector genes were hrpX/hrpG-regulated in MMXC using selected genes as controls. Finally, gyrB and thyA were validated as the optimized reference genes of Xcc cultured in MMXC, and qRT-PCR analysis was demonstrated to be an efficient alternative to Gus-activity detection for the analysis of Xcc expression. This information will be useful in the future studies of Xcc, especially those seeking new functional genes.
Collapse
|