Wheat adaptation to environmental stresses under climate change: Molecular basis and genetic improvement

A system genetics analysis uncovers the regulatory variants controlling drought response in wheat

Plants activate a variable response to drought stress by modulating transcription of key genes. However, our knowledge of genetic variations governing gene expression in response to drought stress remains limited in natural germplasm. Here, we performed a comprehensive analysis of the transcriptional variability of 200 wheat accessions in response to drought stress by using a systems genetics approach integrating pan-transcriptome, co-expression networks, transcriptome-wide association study (TWAS), and expression quantitative trait loci (eQTLs) mapping. We identified 1621 genes and eight co-expression modules significantly correlated with wheat drought tolerance. We also defined 620 664 and 654 798 independent eQTLs associated with the expression of 17 429 and 18 080 eGenes under normal and drought stress conditions. Focusing on dynamic regulatory variants, we further identified 572 eQTL hotspots and constructed transcription factors governed drought-responsive network by the XGBoost model. Subsequently, by combining with genome-wide association study (GWAS), we uncovered a 369-bp insertion variant in the TaKCS3 promoter containing multiple cis-regulatory elements recognized by eQTL hotspot-associated transcription factors that enhance its transcription. Further functional analysis indicated that elevating TaKCS3 expression affects cuticular wax composition to reduce water loss during drought stress, and thereby increase drought tolerance. This study sheds light on the genome-wide genetic variants that influence dynamic transcriptional changes during drought stress and provides a valuable resource for the mining of drought-tolerant genes in the future.

Rooting for resilience: central metaxylem area as a breeding target for yield gain and resilience in wheat (Triticum aestivum L.)

BACKGROUND

To ensure food security amid unpredictable climatic conditions and depleting natural resources, larger and stable genetic gain have to be realised in wheat. Adapting to these challenges requires focus on both above-ground and below-ground traits. Root anatomy reveals the functional adaptations of the root system. Despite their potential, root anatomical traits remain underutilized but hold promise as breeding targets for developing efficient and resilient crops. Our study aims to identify highly plastic wheat genotypes with superior yield stability and robust root anatomical traits, enabling them to thrive under diverse and challenging environmental conditions. By leveraging advanced multi-trait stability indices and models, we seek to provide breeders with valuable insights for enhancing wheat resilience and productivity.

RESULTS

In this study, 150 wheat genotypes were evaluated across three diverse environments for 10 root anatomical traits along with phenological observation and grain yield. The results show significant positive correlations between root traits, such as axial hydraulic conductance based on the central metaxylem area and total xylem area, with grain yield. This highlights the critical role of these less explored root traits in yield formation. Central metaxylem area was able to explain more than 14 per cent variation in yield over all the three environments. Although the polynomial equation did not significantly improve data fitness, it clearly indicates no sign of yield saturation at the highest CMXA levels. Modern tools like GGE and AMMI though highly effective in reducing the dimensions but do not effectively rank genotypes on the basis of different trait values simultaneously. Advanced models such as BLUP, WAASB, and multi-trait stability indices (MTSI, MGIDI, and FAI-BLUP) have the power to overcome the collinearity in different variables and use the trait values to identify superior genotypes. Genotypes such as G97 and G18 (both being derivative from the cross HDCSW18/CSW1), G112, G144 (both CIMMYT material) and G131 (31ESWYT135/CSW23) consistently exhibited high yield and stability and were picked up by all models. The study demonstrated a moderate coincidence index of 22.72% among these models, confirming the value of selected genotypes. Positive correlations between traits like axial hydraulic conductance and yield highlighted the importance of efficient water transport, nutrient exchange and hydraulic safety of crop.

CONCLUSION

Central metaxylem area based axial hydraulic conductance is explaining more than 14 per cent of variation in the yield across the environment and this along with whole root area and proper phenological adjustment can play key role in yield consolidation with high resilience under more likely uncertain production condition in the future. Three out of five genotypes consistently being picked by different stability models are derivative of HDCSW18, a variety released for conservation agriculture condition and with very strong root system and biomass. High biomass accumulation facilitated by early seeding of the genotypes with mild vernalisation requirement with high root central metaxylem area can sustain higher seed production under challenging climates and thus the findings contribute to strategies for improving wheat resilience.

TaDTGIP1-TaDTG6-BDel574-TaPIF1 module regulates drought stress response in wheat

Drought is a major environmental constraint to wheat production, yet the genetic and molecular mechanisms underlying drought tolerance remain poorly understood. A gain-of-function protein variant TaDTG6-BDel574 has been identified and positively regulates TaPIF1 transcription to enhance wheat drought tolerance. However, the precise molecular pathways driving this response are yet to be fully characterized. In this study, we demonstrate that TaPIF1 plays a crucial role in mediating wheat drought tolerance by regulating stomatal aperture to control transpiration. RNA sequencing combined with biochemical assays revealed that TaPIF1 directly binds to E-box elements to activate the expression of key stress-responsive genes, including TaABI5, TaRD17, and TaP5CS1. Notably, overexpression of TaABI5 enhances wheat drought tolerance by promoting stomatal closure, thereby reducing water loss. Furthermore, TaPIF1 interacts with TaABI5 and the bHLH transcription factor TaAKS1 to synergistically enhancing the transcriptional activation of TaABI5, TaRD17, and TaP5CS1. Additionally, our findings verified that TaDTGIP1 interacts with TaDTG6-BDel574 to attenuate its binding affinity and regulatory activity on the TaPIF1 promoter, thereby negatively regulating drought tolerance. Together, our findings unveil the molecular mechanisms underlying wheat drought stress response mediated by the TaDTGIP1-TaDTG6-BDel574-TaPIF1/TaABI5/TaAKS1-target regulatory module and identify potential candidate genes for breeding elite drought-tolerant wheat varieties.

Improving multiple disease resistance in wheat by using multitask kinase fusion proteins

Broad spectrum resistance genes are desirable in wheat breeding because they confer resistance against multiple pathogens. Kinase fusion proteins confer broad spectrum resistance in wheat. The resistance locus Pm4 encodes a kinase fusion protein that confers resistance to the fungal diseases powdery mildew and wheat blast.

Evaluating the role of post-harvest glyphosate application in enhancing weed control in winter wheat

Changes in the timing and intensity of spring rainfall have led to a significant increase in late-season weed emergence in Türkiye. These newly emerged weeds tend to grow more vigorously due to the absence of competition with crops and other weeds during their development. Two field experiments were conducted in continuous monoculture winter wheat over three growing seasons (2020-2023) in Türkiye. The first goal was to determine the impact of post-harvest herbicide (PHH) on the critical time for weed removal (CTWR) in winter wheat, and the second goal was to evaluate the effects of PHH combined with various weed control treatments on weed populations, the soil seed bank, and crop yield. The experiment followed a split-plot design, with the PHH regimes and weed removal timing or weed control treatments serving as the main and sub-plots, respectively. The herbicide regime included post-harvest glyphosate potassium salt (PHG) applied at 2.646 kg ai ha-1 and No PHG. Weed removal timings were set at 10-day intervals, from 0 to 110 days after wheat emergence (DAE). Weedy and weed-free controls were included for comparison. The weed control treatments involved post-emergence tribenuron-methyl at 7.5 g ai ha-1 and hand weeding. The application of the PHG delayed the CTWR from 416 growing degree days (GDD) to 516.5 GDD in 2022 and from 465.6 GDD to 661.2 GDD in 2023, effectively preventing yield loss. The combined use of PHG with post-emergence tribenuron-methyl or hand weeding maximized wheat yield while minimizing the weed flora and the size of the soil seed bank.

The CGA1-SNAT regulatory module potentially contributes to cytokinin-mediated melatonin biosynthesis and drought tolerance in wheat

BACKGROUND

Melatonin plays a pivotal role in alleviating abiotic stresses, yet its biosynthesis regulation in crops, particularly wheat, remains unclear. This study explores regulatory components of melatonin biosynthesis under drought stress using bioinformatic, physiochemical, and molecular approaches in contrasting wheat genotypes.

RESULTS

Bioinformatic analysis identified SNAT, a key melatonin biosynthesis gene, and 88 transcription factors (TFs) from 26 families as potential regulators. The regulatory network for SNAT highlighted CYTOKININ-RESPONSIVE GATA FACTOR 1 (CGA1) as a significant TF. Under drought stress, contrasting wheat genotypes exhibited distinct CGA1-SNAT module expression, melatonin and cytokinin levels, photosynthetic activity, and oxidative damage. Cytokinin treatments regulated the CGA1-SNAT module, altering melatonin content, SPAD values, and chloroplast numbers, particularly in drought-susceptible genotypes.

CONCLUSIONS

This study uncovers the pivotal role of the CGA1-SNAT module and its interaction with the cytokinin pathway in regulating melatonin biosynthesis during drought stress. These findings enhance our understanding of the molecular mechanisms underpinning drought tolerance and offer promising targets for genetic and biochemical interventions to improve crop resilience.

Unraveling the genetic basis of heat tolerance and yield in bread wheat: QTN discovery and Its KASP-assisted validation

BACKGROUND

Wheat (Triticum aestivum L.), a globally significant cereal crop and staple food, faces major production challenges due to abiotic stresses such as heat stress (HS), which pose a threat to global food security. To address this, a diverse panel of 126 wheat genotypes, primarily landraces, was evaluated across twelve environments in India, comprising of three locations, two years and two growing conditions. The study aimed to identify genetic markers associated with key agronomic traits in bread wheat, including germination percentage (GERM_PCT), ground cover (GC), days to booting (DTB), days to heading (DTHD), days to flowering (DTFL), days to maturity (DTMT), plant height (PH), grain yield (GYLD), thousand grain weight (TGW), and the normalized difference vegetation index (NDVI) under both timely and late-sown conditions using 35 K SNP genotyping assays. Multi-locus GWAS (ML-GWAS) was employed to detect significant marker-trait associations, and the identified markers were further validated using Kompetitive Allele Specific PCR (KASP).

RESULTS

Six ML-GWAS models were employed for this purpose, leading to the identification of 42 highly significant and consistent quantitative trait nucleotides (QTNs) under both timely and late sown conditions, controlled by 20 SNPs, explaining 3-58% of the total phenotypic variation. Among these, noteworthy QTNs were a major grain yield QTN (qtn_nbpgr_GYLD_3B) on chromosome 3B, a pleiotropic SNP AX-95018072 on chromosome 7A influencing phenology and NDVI, and robust TGW QTNs on chromosomes 2B (qtn_nbpgr_TGW_2B), 1A (qtn_nbpgr_TGW_1A), and 4B (qtn_nbpgr_TGW_4B). Furthermore, annotation revealed that candidate genes near these QTNs encoded stress-responsive proteins, such as chaperonins, glycosyl hydrolases, and signaling molecules. Additionally, three major SNPs AX-95018072 (7A), AX-94946941 (6B), and AX-95232570 (1B) were successfully validated using KASP assay.

CONCLUSION

Our study effectively uncovered novel QTNs and candidate genes linked to heat tolerance and yield-related traits in wheat through an extensive genetic approaches. These QTNs not only corresponded with previously identified QTLs and genes associated with yield traits but also highlighted several new loci, broadening the existing genetic understanding. These findings provide valuable insights into the genetic basis of heat tolerance in wheat and offer genomic resources, including validated markers that could accelerate marker-assisted breeding and the development of next-generation heat-resilient cultivars.

Application of Synthetic Microbial Communities of Kalidium schrenkianum in Enhancing Wheat Salt Stress Tolerance

Soil salinization poses a significant challenge to global agriculture, particularly in arid and semi-arid regions like Xinjiang. Kalidium schrenkianum, a halophytic plant adapted to saline-alkaline conditions, harbors endophytic microorganisms with potential plant growth-promoting properties. In this study, 177 endophytic bacterial strains were isolated from K. schrenkianum, and 11 key strains were identified through functional screening based on salt tolerance, nutrient solubilization, and growth-promoting traits. Synthetic microbial communities (SMCs) were then constructed using these strains and optimized to enhance wheat growth under salt stress. The SMCs significantly improved seed germination, root length, and seedling vigor in both spring and winter wheat in hydroponic and pot experiments. Furthermore, the SMCs enhanced the activities of antioxidant enzymes, including superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and levels of malondialdehyde (MDA) and proline (PRO). They also reduced oxidative stress and improved chlorophyll content in wheat seedlings. These results demonstrate the potential of microbial consortia derived from extreme environments as eco-friendly biofertilizers for improving crop performance in saline soils, offering a sustainable alternative to chemical fertilizers and contributing to agricultural resilience and productivity.

Evaluation of grain yield, and quality characteristics of some bread wheat cultivars in different agro-ecological regions of Türkiye

Climate change and recurrent droughts challenge wheat production and yield, necessitating careful selection and plant breeding research. "Value for Cultivation and Use" experiments are crucial for assessing genetic gains and providing information about potential pathways to alleviate production losses under specific environmental conditions. The goal of the study was to compare the grain yield and quality characteristics of 46 registered bread wheat cultivars in 5 out of 7 agro-ecological regions of Türkiye between 2016-2017 and 2017-2018. The registered wheat cultivars were also characterized in terms of high molecular weight glutenin subunits (HMW-GS) and the relationships between quality traits and band patterns. Genotype × environment interaction was found statistically significant (p < 0.05) for grain yield and the stability of the cultivars as explained on biplot graphs. The Mediterranean and the Central Anatolian region had the highest and the lowest average grain yield of 8137 kg ha-1 and 4260 kg ha-1 respectively under the rainfed conditions. The average thousand kernel weight of the cultivars was 35.3-39.9 g, with test weight of 77.2-79.2 kg hL-1, protein content of 13.4-14.7 %, Zeleny sedimentation of 39.2-53.3 mL, and alveograph energy value varied between 191.2-276.4 × 10-4 J. The most common subunits in cultivars were 2∗ at Glu-A1, 7 + 8 and 7 + 9 at Glu-B1, and 5 + 10 at Glu-D1. It is concluded that high-quality new varieties are developed by high-molecular-weight glutenin subunits oriented crosses and selections in Turkish wheat breeding programs.

Genetic Variation in Wheat Root Transcriptome Responses to Salinity: A Comparative Study of Tolerant and Sensitive Genotypes

Salt tolerance is a critical trait for plant survival and productivity in saline environments. Development of salt tolerant crops is a practical strategy for addressing soil salinity issues. In this study, RNA-Seq analysis was performed using two wheat cultivars with contrasting salt tolerance (Neixiang188, tolerant and Barra, sensitive) at 6 h and 24 h after salinity treatment to determine the genetic variations reflected in the RNA expression patterns and identify key genes associated with salt tolerance. Our results revealed that there were 2983 upregulated and 1091 downregulated differentially expressed genes (DEGs), which were found in common in the two accessions. Meanwhile, 529 salt tolerant associated DEGs were subjected to GO function annotation, KEGG enrichment, and protein-protein interaction (PPI) network prediction. Finally, a theoretical framework outlining the salt tolerance mechanisms of Neixiang188 was proposed. It can be inferred that Neixiang188 possesses superior ion homeostasis, ROS detoxification, and osmotic adjustment abilities compared to Barra when subjected to saline stress. The present research sheds light on the genetic foundation of salt tolerance in wheat and offers candidate genes for genetic manipulation. Our research insights enhance the comprehension of the molecular mechanisms underlying salt stress responses and could guide future breeding efforts for improving salt tolerance in crops.

Ancient duplications, multidimensional specializations, and defense role of hexokinases in wheat

Hexokinases (HXKs), which sense and catalyze cellular sugar, play a critical role in the growth and development of various plants, including wheat, a primary source of human calories frequently attacked by fungal pathogens. However, the evolutionary dynamics and functional diversification of HXKs in wheat, particularly their roles in plant defense, remain unclear. Here, we discovered that the wheat hexokinase gene family originated through multiple ancient gene duplications across different plant lineages and has undergone comprehensive, multidimensional functional specialization in gene expression, subcellular localization, enzyme activity, and regulation of plant defense responses. Gene expression analysis suggests that two-thirds of the TaHXK genes are responsive to fungal infection. Subcellular analysis reveals that while six TaHXKs are localized in mitochondria, three TaHXKs from different phylogenetic branches are sorted into other cellular compartments. Notably, biochemical analysis shows that TaHXKs in mitochondria differ in their glucose-catalyzing activity, with TaHXK5 and TaHXK3 exhibiting the highest and lowest enzyme activity, respectively. Consistently, transient expression analysis suggests that TaHXK5 induces various plant defense responses, while TaHXK3 is defective in activating some plant defense responses. Furthermore, inactivation of the glucokinase activity of TaHXK5 compromised its function in defense activation, suggesting that mitochondrial TaHXKs display functional divergence in both enzyme activity and defense-inducing activity that are intrinsically connected. Overall, our findings reveal that the multidimensional specialization events following the ancient duplication events may have shaped the functional diversity of HXKs in wheat, shedding light on their evolutionary dynamics and potentially contributing to the improvement of wheat defense.

Genome-wide linkage mapping of Fusarium crown rot in common wheat (Triticum aestivum L.)

Introduction

Powdery mildew (PM) poses an extreme threat to wheat yields and quality.[Methods] In this study, 262 recombinant inbred lines (RILs) of Doumai and Shi 4185 cross were used to map PM resistance genes across four environments. A high-density genetic linkage map of the Doumai/Shi 4185 RIL population was constructed using the wheat Illumina iSelect 90K single-nucleotide polymorphism (SNP) array.

Results

In total, four stable quantitative trait loci (QTLs) for PM resistance, QPm.caas-2AS, QPm.caas-4AS, QPm.caas-4BL, and QPm.caas-6BS, were detected and explained 5.6%-15.6% of the phenotypic variances. Doumai contributed all the resistance alleles of QPm.caas-2AS, QPm.caas-4AS, QPm.ca as-4BL, and QPm.caas-6BS. Among these, QPm.caas-4AS and QPm.caas-6BS overlapped with the previously reported loci, whereas QPm.caas-2AS and QPm.caas-4BL are potentially novel. Additionally, six high-confidence genes encoding the NBS-LRR-like resistance protein, disease resistance protein family, and calcium/calmodulin-dependent serine/threonine-kinase were selected as the candidate genes for PM resistance. Three kompetitive allele-specific PCR (KASP) markers, Kasp_PMR_2AS for QPm.caas-2AS, Kasp_PMR_4BL for QPm.caas-4BL, and Kasp_PMR_6BS for QPm.caas-6BS, were developed, and their genetic effects were validated in a natural population including 100 cultivars.

Discussion

These findings will offer valuable QTLs and available KASP markers to enhance wheat marker-assisted breeding for PM resistance.

Spraying KH2PO4 Alleviates the Damage of Spring Low-Temperature Stress by Improving the Physiological Characteristics of Wheat Flag Leaves

The low-temperature stress (LTS) in spring results in tremendous yield loss in wheat production, and the application of potassium dihydrogen phosphate (KH2PO4) can alleviate stress-induced damage. However, the underlying effect of spraying KH2PO4 on the physiological characteristics of wheat flag leaves under spring LTS remains unclear. In this study, we investigated the effect of spraying KH2PO4 on flag leaf physiological traits and yield under spring LTS, including treatments at 15 °C and spraying H2O (CK), treatment at -4 °C and spraying H2O (LT1), and treatment at -4 °C and spraying KH2PO4 (LT2). The results showed that spraying KH2PO4 significantly increased the activities of the superoxide dismutase (SOD), the peroxidase (POD), and the catalase (CAT), and reduced malondialdehyde (MDA) content in the flag leaves. Compared to LT1, the SOD, POD, and CAT activities in the flag leaves of the Yangnong19 (YN19) and Xinmai26 (XM26) via LT2 increased by 5.5%, 10.9%, and 3.9%, and 5.4%, 9.2%, and 4.4%, respectively, and the MDA content of the YN19 and XM26 decreased by 10.5% and 9.1%, respectively, at 0-12 d after low temperature treatment (DALTT). Spraying KH2PO4 appreciably alleviated damage to the leaf cell morphology and tissue integrity, and increased the accumulation of proline and soluble protein, the chlorophyll content, and the activities of Ribulose-1,5-bisphosphate carboxylase and phosphoenolpyruvate carboxykinase. The net photosynthetic rate in the flag leaves of the YN19 and XM26 via LT2 increased by 37.9% and 35.9%, respectively, at 0-12 DALTT, compared to LT1. Moreover, spraying KH2PO4 reduced the yield loss rate of the YN19 and XM26 by 13.06% and 16.72%, respectively. The present study demonstrates that spraying KH2PO4 can enhance wheat resistance to spring LTS and maintain the photosynthetic capacity of flag leaves, alleviating the negative effects of LTS on grain yield.

Optimized Phosphorus Application Enhances Wheat Stem Lodging Resistance Under Spring Low-Temperature Stress

Spring low-temperature stress (LTS) has become a major limiting factor for the development of high yield, quality and efficiency in wheat production. It not only affects the function of wheat leaves and the development of spikes but also impacts stem lodging resistance, and may experience elevated risk of stem lodging. This study conducted a field pot experiment to assess the effect of phosphorus fertilizer application mode on wheat stem lodging resistance under spring LTS. Two wheat varieties, Yannong19 (YN19, cold-tolerant variety) and Xinmai26 (XM26, cold-sensitive variety) used as the experiment material. Two phosphorus fertilizer application models including traditional phosphorus application (TPA) and optimized phosphorus application (OPA) were employed. Temperature treatment was conducted at 15 °C (CK) and -4 °C (LT) in a controlled phytotron. Our results showed that spring LTS decreased the stem wall thickness and internode fullness, and altered stem anatomical structure and chemical composition, resulting in a decrease in wheat stem mechanical strength and lodging resistant index. Compared with TPA, the OPA increased the stem wall thickness and internode fullness. The thickness of the stem mechanic tissue layer and parenchymatous tissue, and the area of the large vascular bundle and small vascular bundle were increased by the OPA, which alleviated the damage to stem cell walls caused by spring LTS. At the same time, the OPA also increased the contents of lignin, cellulose, and soluble sugar, improving the C/N ratio in wheat stem. Due to the improved stem morphological characteristics, anatomical structure, and chemical compositions, the wheat stem exhibited enhanced lodging resistance, which increased the lodging resistant index of the 2nd and 3rd internodes of YN19 and XM26 by 27.27%, 11.63% and 14.15%, 15.73% at the dough stage compared with TPA under spring LTS. Meanwhile, OPA could not only alleviate the yield loss caused by spring LTS, but also increase the grain yield without spring LTS. This study indicated that OPA enhances wheat stem lodging resistance under spring LTS, and would be meaningful and practical for improving wheat resistance to low-temperature stress.

Utilizing Short Interspersed Nuclear Element as a Genetic Marker for Pre-Harvest Sprouting in Wheat

Pre-harvest sprouting (PHS) is a complex abiotic stress caused by multiple exogenous and endogenous variables that results in random but significant quality and yield loss at the terminal crop stage in more than half of the wheat-producing areas of the world. Systematic research over more than five decades suggests that addressing this challenge requires tools beyond the traditional genetic manipulation approach. Previous molecular studies indicate a possible role of epigenetics in the regulation of seed dormancy and PHS in crops, especially through RNA-directed DNA methylation (RdDM) pathways mediated by Argonaute (AGO) proteins. In this study, we explore the role of the AGO802B gene associated with PHS resistance in wheat, through the presence of a SINE retrotransposon insertion. The current study found the SINE insertion at 3'UTR of the TaAGO802B present in 73.2% of 41 cultivars analyzed and in 92.6% of the resistant cultivar subset. The average expression of TaAGO802B in cultivars with the SINE insertion was 73.3% lower than in cultivars without insertion. This study also indicated a significant positive correlation between the PHS score and methylation levels in the cultivars. The resistant cultivars with the SINE insertion recorded 54.7% lower methylation levels than susceptible cultivars. Further analysis of a DH population (Sadash × P2711) reveals that SINE insertion co-segregates with PHS resistance. This sets forth the SINE insertion in TaAGO802B as a genetic marker for screening wheat germplasm and as an efficient tool for breeding PHS-resistant wheat cultivars.

Exploring the Frontier of Wheat Rust Resistance: Latest Approaches, Mechanisms, and Novel Insights

Wheat rusts, including leaf, stripe, and stem rust, have been a threat to global food security due to their devastating impact on wheat yields. In recent years, significant strides have been made in understanding wheat rusts, focusing on disease spread mechanisms, the discovery of new host resistance genes, and the molecular basis of rust pathogenesis. This review summarizes the latest approaches and studies in wheat rust research that provide a comprehensive understanding of disease mechanisms and new insights into control strategies. Recent advances in genetic resistance using modern genomics techniques, as well as molecular mechanisms of rust pathogenesis and host resistance, are discussed. In addition, innovative management strategies, including the use of fungicides and biological control agents, are reviewed, highlighting their role in combating wheat rust. This review also emphasizes the impact of climate change on rust epidemiology and underscores the importance of developing resistant wheat varieties along with adaptive management practices. Finally, gaps in knowledge are identified and suggestions for future research are made. This review aims to inform researchers, agronomists, and policy makers, and to contribute to the development of more effective and sustainable wheat rust control strategies.

Wild grass-derived alleles represent a genetic architecture for the resilience of modern common wheat to stresses

This review explores the integration of wild grass-derived alleles into modern bread wheat breeding to tackle the challenges of climate change and increasing food demand. With a focus on synthetic hexaploid wheat, this review highlights the potential of genetic variability in wheat wild relatives, particularly Aegilops tauschii, for improving resilience to multifactorial stresses like drought, heat, and salinity. The evolutionary journey of wheat (Triticum spp.) from diploid to hexaploid species is examined, revealing significant genetic contributions from wild grasses. We also emphasize the importance of understanding incomplete lineage sorting in the genomic evolution of wheat. Grasping this information is crucial as it can guide breeders in selecting the appropriate alleles from the gene pool of wild relatives to incorporate into modern wheat varieties. This approach improves the precision of phylogenetic relationships and increases the overall effectiveness of breeding strategies. This review also addresses the challenges in utilizing the wheat wild genetic resources, such as the linkage drag and cross-compatibility issues. Finally, we culminate the review with future perspectives, advocating for a combined approach of high-throughput phenotyping tools and advanced genomic techniques to comprehensively understand the genetic and regulatory architectures of wheat under stress conditions, paving the way for more precise and efficient breeding strategies.

Genome-wide association study identifies loci and candidate genes for RVA parameters in wheat (Triticum aestivum L.)

The gelatinization and retrogradation characteristics of wheat starch affect the eating quality of Chinese-style food. Rapid Visco Analyzer (RVA) parameters have been widely used as important indicators to evaluate and improve the quality of wheat starch. However, the genetic basis of RVA parameters remains to be further explored. In the present study, a natural population was genotyped using 90K single nucleotide polymorphism (SNP) arrays, and the RVA parameters of this population grown in five environments were evaluated. The results showed that 22,068 high-quality SNP markers were identified and distributed unequally on the chromosomes. According to the genetic distance, 214 wheat materials were divided into four groups. Except for the pasting temperature (PTT), six parameters followed a normal distribution. Based on the general linear model, 969 significant association SNPs were detected by genome-wide association studies (GWAS), and chromosomes 7A and 2B had the most associated SNPs. Breakdown viscosity (BV) was associated with the most SNPs (n = 238), followed by PTT (n = 186), peak viscosity (PV; n = 156), trough viscosity (TV; n = 127), and final viscosity (FV; n = 126). According to the average linkage disequilibrium (LD), 33 stable quantitative trait loci (QTLs) were identified for single parameters in multiple environments, of which 12 were associated with BV, followed by peak time (PT; n = 8) and PTT (n = 7). On the other hand, 67 pleiotropic QTLs were identified for multiple parameters. Three candidate genes-TasbeIIa, TasbeI, and TassIIa-were screened for phenotyping analysis. The grain width and the weight of the TasbeIIa and TaSSIIa knockout (KO) lines were significantly lower than those of the TasbeI KO lines and the control (CK). The KO lines had smaller endosperm cells, smaller A-type starch granules, and higher amylose content. The TasbeI KO lines showed normal RVA curves, while the TasbeIIa KO lines showed flat curves. However, the TaSSIIa lines failed to paste under the RVA temperatures. Conclusively, the SNPs/QTLs significantly associated with the RVA parameters and genetic resources with novel haplotypes could be used to improve the quality of wheat starch.

Temperature fluctuation in soil alters the nanoplastic sensitivity in wheat

Despite the wide acknowledgment that plastic pollution and global warming have become serious agricultural concerns, their combined impact on crop growth remains poorly understood. Given the unabated megatrend, a simulated soil warming (SWT, +4 °C) microcosm experiment was carried out to provide a better understanding of the effects of temperature fluctuations on wheat seedlings exposed to nanoplastics (NPs, 1 g L-1 61.71 ± 0.31 nm polystyrene). It was documented that SWT induced oxidative stress in wheat seedlings grown in NPs-contaminated soil, with an 85.56 % increase in root activity, while decreasing plant height, fresh weight, and leaf area by 8.72 %, 47.68 %, and 15.04 % respectively. The SWT also resulted in reduced photosynthetic electron-transfer reaction and Calvin-Benson cycle in NPs-treated plants. Under NPs, SWT stimulated the tricarboxylic acid (TCA) metabolism and bio-oxidation process. The decrease in photosynthesis and the increase in respiration resulted in an 11.94 % decrease in net photosynthetic rate (Pn). These results indicated the complicated interplay between climate change and nanoplastic pollution in crop growth and underscored the potential risk of nanoplastic pollution on crop production in the future climate.

Stress adaptive plasticity from Aegilops tauschii introgression lines improves drought and heat stress tolerance in bread wheat (Triticum aestivum L.)

Aegilops tauchii is a D-genome donor of hexaploid wheat and is a potential source of genes for various biotic and abiotic stresses including heat and drought. In the present study, we used multi-stage evaluation technique to understand the effects of heat and drought stresses on Ae. tauschii derived introgression lines (ILs). Preliminary evaluation (during stage-I) of 369 ILs for various agronomic traits identified 59 agronomically superior ILs. In the second stage (stage-II), selected ILs (i.e., 59 ILs) were evaluated for seedling heat (at 30 °C and 35 °C) and drought (at 20% poly-ethylene glycol; PEG) stress tolerance under growth chambers (stage-II). Heat and drought stress significantly reduced the seedling vigour by 59.29 and 60.37 percent, respectively. Genotype × treatment interaction analysis for seedling vigour stress tolerance index (STI) identified IL-50, IL-56, and IL-68 as high-performing ILs under heat stress and IL-42 and IL-44 as high-performing ILs under drought stress. It also revealed IL-44 and IL-50 as the stable ILs under heat and drought stresses. Furthermore, in the third stage (stage-III), selected ILs were evaluated for heat and drought stress tolerance under field condition over two cropping seasons (viz., 2020-21 and 2021-22), which significantly reduced the grain yield by 72.79 and 48.70 percent, respectively. Stability analysis was performed to identify IL-47, IL-51, and IL-259 as the most stable ILs in stage-III. Tolerant ILs with specific and wider adaptability identified in this study can serve as the potential resources to understand the genetic basis of heat and drought stress tolerance in wheat and they can also be utilized in developing high-yielding wheat cultivars with enhanced heat and drought stress tolerance.

Seeds Priming with Melatonin Improves Root Hydraulic Conductivity of Wheat Varieties under Drought, Salinity, and Combined Stress

Drought and salinity stress reduce root hydraulic conductivity of plant seedlings, and melatonin application positively mitigates stress-induced damage. However, the underlying effect of melatonin priming on root hydraulic conductivity of seedlings under drought-salinity combined remains greatly unclear. In the current report, we investigated the influence of seeds of three wheat lines' 12 h priming with 100 μM of melatonin on root hydraulic conductivity (Lpr) and relevant physiological indicators of seedlings under PEG, NaCl, and PEG + NaCl combined stress. A previous study found that the combined PEG and NaCl stress remarkably reduced the Lpr of three wheat varieties, and its value could not be detected. Melatonin priming mitigated the adverse effects of combined PEG + NaCl stress on Lpr of H4399, Y1212, and X19 to 0.0071 mL·h-1·MPa-1, 0.2477 mL·h-1·MPa-1, and 0.4444 mL·h-1·MPa-1, respectively, by modulating translation levels of aquaporin genes and contributed root elongation and seedlings growth. The root length of H4399, Y1212, and X19 was increased by 129.07%, 141.64%, and 497.58%, respectively, after seeds pre-treatment with melatonin under PEG + NaCl combined stress. Melatonin -priming appreciably regulated antioxidant enzyme activities, reduced accumulation of osmotic regulators, decreased levels of malondialdehyde (MDA), and increased K+ content in stems and root of H4399, Y1212, and X19 under PEG + NaCl stress. The path investigation displayed that seeds primed with melatonin altered the modification of the path relationship between Lpr and leaf area under stress. The present study suggested that melatonin priming was a strategy as regards the enhancement of root hydraulic conductivity under PEG, NaCl, and PEG + NaCl stress, which efficiently enhanced wheat resistant to drought-salinity stress.

Prediction of biomass accumulation and tolerance of wheat seedlings to drought and elevated temperatures using hyperspectral imaging

Early prediction of important agricultural traits in wheat opens up broad prospects for the development of approaches to accelerate the selection of genotypes for further breeding trials. This study is devoted to the search for predictors of biomass accumulation and tolerance of wheat to abiotic stressors. Hyperspectral (HS) and chlorophyll fluorescence (ChlF) parameters were analyzed as predictors under laboratory conditions. The predictive ability of reflectance and normalized difference indices (NDIs), as well as their relationship with parameters of photosynthetic activity, which is a key process influencing organic matter production and crop yields, were analyzed. HS parameters calculated using the wavelengths in Red (R) band and the spectral range next to the red edge (FR-NIR) were found to be correlated with biomass accumulation. The same ranges showed potential for predicting wheat tolerance to elevated temperatures. The relationship of HS predictors with biomass accumulation and heat tolerance were of opposite sign. A number of ChlF parameters also showed statistically significant correlation with biomass accumulation and heat tolerance. A correlation between HS and ChlF parameters, that demonstrated potential for predicting biomass accumulation and tolerance, has been shown. No predictors of drought tolerance were found among the HS and ChlF parameters analyzed.

Upregulation of Wheat Heat Shock Transcription Factor TaHsfC3-4 by ABA Contributes to Drought Tolerance

Drought stress can seriously affect the yield and quality of wheat (Triticum aestivum). So far, although few wheat heat shock transcription factors (Hsfs) have been found to be involved in the stress response, the biological functions of them, especially the members of the HsfC (heat shock transcription factor C) subclass, remain largely unknown. Here, we identified a class C encoding gene, TaHsfC3-4, based on our previous omics data and analyzed its biological function in transgenic plants. TaHsfC3-4 encodes a protein containing 274 amino acids and shows the basic characteristics of the HsfC class. Gene expression profiles revealed that TaHsfC3-4 was constitutively expressed in many tissues of wheat and was induced during seed maturation. TaHsfC3-4 could be upregulated by PEG and abscisic acid (ABA), suggesting that this Hsf may be involved in the regulation pathway depending on ABA in drought resistance. Further results represented that TaHsfC3-4 was localized in the nucleus but had no transcriptional activation activity. Notably, overexpression of TaHsfC3-4 in Arabidopsis thaliana pyr1pyl1pyl2pyl4 (pyr1pyl124) quadruple mutant plants complemented the ABA-hyposensitive phenotypes of the quadruple mutant including cotyledon greening, root elongation, seedling growth, and increased tolerance to drought, indicating positive roles of TaHsfC3-4 in the ABA signaling pathway and drought tolerance. Furthermore, we identified TaHsfA2-11 as a TaHsfC3-4-interacting protein by yeast two-hybrid (Y2H) screening. The experimental data show that TaHsfC3-4 can indeed interact with TaHsfA2-11 in vitro and in vivo. Moreover, transgenic Arabidopsis TaHsfA2-11 overexpression lines exhibited enhanced drought tolerance, too. In summary, our study confirmed the role of TaHsfC3-4 in response to drought stress and provided a target locus for marker-assisted selection breeding to improve drought tolerance in wheat.