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Xu H, Chakraborty R, Adak AK, Das A, Yang B, Meier D, Riss A, Reichert J, Narasimhan S, Barth JV, Papageorgiou AC. On-Surface Isomerization of Indigo within 1D Coordination Polymers. Angew Chem Int Ed Engl 2024; 63:e202319162. [PMID: 38235942 DOI: 10.1002/anie.202319162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 01/10/2024] [Accepted: 01/17/2024] [Indexed: 01/19/2024]
Abstract
Natural products are attractive components to tailor environmentally friendly advanced new materials. We present surface-confined metallosupramolecular engineering of coordination polymers using natural dyes as molecular building blocks: indigo and the related Tyrian purple. Both building blocks yield identical, well-defined coordination polymers composed of (1 dehydroindigo : 1 Fe) repeat units on two different silver single crystal surfaces. These polymers are characterized atomically by submolecular resolution scanning tunnelling microscopy, bond-resolving atomic force microscopy and X-ray photoelectron spectroscopy. On Ag(100) and on Ag(111), the trans configuration of dehydroindigo results in N,O-chelation in the polymer chains. On the more inert Ag(111) surface, the molecules additionally undergo thermally induced isomerization from the trans to the cis configuration and afford N,N- plus O,O-chelation. Density functional theory calculations confirm that the coordination polymers of the cis-isomers on Ag(111) and of the trans-isomers on Ag(100) are energetically favoured. Our results demonstrate post-synthetic linker isomerization in interfacial metal-organic nanosystems.
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Affiliation(s)
- Hongxiang Xu
- Technical University of Munich, TUM School of Natural Sciences, Physics Department E20, James Franck Strasse 1, 85748, Garching, Germany
| | - Ritam Chakraborty
- Theoretical Sciences Unit & School of Advanced Materials, Jawaharlal Nehru Centre for Advanced Scientific Research Jakkur, Bangalore, 560054, India
| | - Abhishek Kumar Adak
- Theoretical Sciences Unit & School of Advanced Materials, Jawaharlal Nehru Centre for Advanced Scientific Research Jakkur, Bangalore, 560054, India
- Current address: The Abdus Salam International Centre for Theoretical Physics, Strada Costiera 11, 34151, Trieste, Italy
| | - Arpan Das
- Theoretical Sciences Unit & School of Advanced Materials, Jawaharlal Nehru Centre for Advanced Scientific Research Jakkur, Bangalore, 560054, India
| | - Biao Yang
- Technical University of Munich, TUM School of Natural Sciences, Physics Department E20, James Franck Strasse 1, 85748, Garching, Germany
- Institute of Functional Nano and Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials and Devices, Soochow University, Suzhou, 215123, P. R. China
| | - Dennis Meier
- Technical University of Munich, TUM School of Natural Sciences, Physics Department E20, James Franck Strasse 1, 85748, Garching, Germany
| | - Alexander Riss
- Technical University of Munich, TUM School of Natural Sciences, Physics Department E20, James Franck Strasse 1, 85748, Garching, Germany
| | - Joachim Reichert
- Technical University of Munich, TUM School of Natural Sciences, Physics Department E20, James Franck Strasse 1, 85748, Garching, Germany
| | - Shobhana Narasimhan
- Theoretical Sciences Unit & School of Advanced Materials, Jawaharlal Nehru Centre for Advanced Scientific Research Jakkur, Bangalore, 560054, India
| | - Johannes V Barth
- Technical University of Munich, TUM School of Natural Sciences, Physics Department E20, James Franck Strasse 1, 85748, Garching, Germany
| | - Anthoula C Papageorgiou
- Technical University of Munich, TUM School of Natural Sciences, Physics Department E20, James Franck Strasse 1, 85748, Garching, Germany
- Laboratory of Physical Chemistry, Department of Chemistry, National and Kapodistrian University of Athens Panepistimiopolis, 15771, Athens, Greece
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2
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Ünver Y, Süleymanoğlu N, Ustabaş R, Bektaş Kİ, Bektaş E, Güler Hİ. 3-(5-(1 H-imidazol-1-yl) pent-1-en-1-yl)-9-ethyl-9 H-carbazole: synthesis, characterization (IR, NMR), DFT, antimicrobial-antioxidant activities and docking study. J Biomol Struct Dyn 2022; 40:12990-13000. [PMID: 34514967 DOI: 10.1080/07391102.2021.1977708] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
3-(5-(1H-imidazol-1-yl) pent-1-en-1-yl)-9-ethyl-9H-carbazole called as compound 1 was synthesized and characterized by proton and carbon-13 nuclear magnetic resonance (1H- and 13C- NMR) and Fourier transform infrared (FTIR) spectroscopic methods. Density Functional Theory/Becke, 3-parameter (DFT/B3LYP), for compound 1 were performed with 6-311++G(d,p) method. Optimized geometry, frontier molecular orbitals (HOMO; highest occupied molecular orbital; LUMO: lowest unoccupied molecular orbital), IR and NMR parameters of compound 1 were obtained. The evaluations reveal that the calculation results support the experimental results. In addition, the antimicrobial (a microwell dilution method) and antioxidant activities (2,2-Diphenyl-1-picrylhydrazyl (DPPH), 2,2'-azino-bis-(3-ethylbenzothiazoline-6-sulfonate) (ABTS) ferric ion reducing antioxidant power (FRAP) of compound 1 were evaluated. According to the results obtained, it showed higher antimicrobial activity (Minimal inhibition concentration (MIC): 78.12 µg/mL) against B. subtilis subsp. Spizizenii. Morever, molecular docking studies were carried out to investigate the interactions of an antimicrobial agent on some important enzymes played important roles in nucleic acid (Deoxyribo nucleic acid (DNA) synthesis, cell wall synthesis, protein synthesis, and metabolism etc. The compound 1 was strongly bound to tyrosyl-tRNA synthetase enzyme (binding energy: -11.18 and Ki: 6.37 nM) and Beta-Ketoacyl-Acp Synthase III enzyme (binding energy: -10.29 and Ki: 28.47 nM).Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Yasemin Ünver
- Faculty of Sciences, Department of Chemistry, Karadeniz Technical University, Trabzon, Turkey
| | - Nevin Süleymanoğlu
- Vocational School of Technical Sciences, Gazi University, Ankara, Turkey
| | - Reşat Ustabaş
- Educational Faculty, Department of Mathematics and Science Education, Ondokuz Mayıs University, Samsun, Turkey
| | - Kadriye İnan Bektaş
- Faculty of Science, Department of Molecular Biology and Genetics, Karadeniz Technical University, Trabzon, Turkey
| | - Ersan Bektaş
- Espiye Vocational School, Giresun University, Giresun, Turkey
| | - Halil İbrahim Güler
- Faculty of Science, Department of Molecular Biology and Genetics, Karadeniz Technical University, Trabzon, Turkey
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3
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Chakraborty G, Park IH, Medishetty R, Vittal JJ. Two-Dimensional Metal-Organic Framework Materials: Synthesis, Structures, Properties and Applications. Chem Rev 2021; 121:3751-3891. [PMID: 33630582 DOI: 10.1021/acs.chemrev.0c01049] [Citation(s) in RCA: 339] [Impact Index Per Article: 84.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Gouri Chakraborty
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
| | - In-Hyeok Park
- Graduate School of Analytical Science and Technology (GRAST), Chungnam National University, Daejeon 34134, South Korea
| | | | - Jagadese J. Vittal
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
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4
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Wu S, Wang S, Zhu M, Gao E. CRYSTALLOGRAPHIC ANALYSIS OF A SAMARIUM(III) COMPLEX WITH 1,3,5-TRIS(1-IMIDAZOLYL)BENZENE. J STRUCT CHEM+ 2020. [DOI: 10.1134/s0022476620120124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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5
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Li X, Huang K, Peng M, Han D, Qiu Q, Jing L, Qin D. Metal-organic frameworks based on flexible bis(imidazole) and dicarboxylic ligands and their applications as selective sensors for magnesium nitrate. Polyhedron 2020. [DOI: 10.1016/j.poly.2020.114349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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6
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Han D, Huang K, Li X, Peng M, Jing L, Yu B, Chen Z, Qin D. Temperature-induced structural diversity of metal-organic frameworks and their applications in selective sensing of nitrobenzene and electrocatalyzing the oxygen evolution reaction. RSC Adv 2019; 9:33890-33897. [PMID: 35528894 PMCID: PMC9073648 DOI: 10.1039/c9ra07031a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Accepted: 10/14/2019] [Indexed: 12/15/2022] Open
Abstract
Structural diversities are presented in four new Co-MOFs containing 1,5-bi(imidazolyl)anthracene and different dibenzobarrelene skeletons based on dicarboxylic acid, in which MOFs 1-3 exhibit 2D networks in a 4-connected node sql topology with the point symbol of {44·62}, while MOF 4 forms a 1D chain structure. It is clearly observed that the 2D-1D structural transformation of 2-4 has been realized by temperature modulated hydrothermal synthesis procedures from 120-160 °C, suggesting the key role of temperature for constructing MOFs. In addition, obvious π-π interactions between anthracene rings can be observed in the architectures of 1-3, which may favorably stabilize their 2D supramolecular networks. More importantly, fluorescence behaviors of 1-4 have been investigated in water among various nitro-aromatic compounds (NACs) and the results show that all samples exhibit high selectivity and fine sensitivity to nitrobenzene (NB) with fluorescence quenching, which is confirmed to be the result of electron transfer from the excited state of ligands to that of NB by density functional theory. Furthermore, MOFs 1-4 have been directly employed as electrocatalysts for the oxygen evolution reaction (OER), in which MOF 4 gives the best activity towards the OER among all as-synthesized samples with an overpotential of 398 mV at a current density of 10 mA cm-2 and a low Tafel slope of 59 mV dec-1.
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Affiliation(s)
- Defang Han
- Key Laboratory of Chemical Synthesis and Pollution Control of Sichuan Province, School of Chemistry and Chemical Engineering, China West Normal University Nanchong 637002 P. R. China
| | - Kun Huang
- Key Laboratory of Chemical Synthesis and Pollution Control of Sichuan Province, School of Chemistry and Chemical Engineering, China West Normal University Nanchong 637002 P. R. China
| | - Xianglin Li
- Key Laboratory of Chemical Synthesis and Pollution Control of Sichuan Province, School of Chemistry and Chemical Engineering, China West Normal University Nanchong 637002 P. R. China
| | - Mengni Peng
- Key Laboratory of Chemical Synthesis and Pollution Control of Sichuan Province, School of Chemistry and Chemical Engineering, China West Normal University Nanchong 637002 P. R. China
| | - Linhai Jing
- Key Laboratory of Chemical Synthesis and Pollution Control of Sichuan Province, School of Chemistry and Chemical Engineering, China West Normal University Nanchong 637002 P. R. China
| | - Baoyi Yu
- Key Laboratory of Urban Agriculture (North China), Ministry of Agriculture, College of Biological Sciences Engineering, Beijing University of Agriculture Beijing 102206 P. R. China
| | - Zeqin Chen
- Key Laboratory of Chemical Synthesis and Pollution Control of Sichuan Province, School of Chemistry and Chemical Engineering, China West Normal University Nanchong 637002 P. R. China
- College of Materials and Chemistry and Chemical Engineering, Chengdu University of Technology Chengdu 610059 P. R. China
| | - Dabin Qin
- Key Laboratory of Chemical Synthesis and Pollution Control of Sichuan Province, School of Chemistry and Chemical Engineering, China West Normal University Nanchong 637002 P. R. China
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7
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Wang T, Huang K, Peng M, Li X, Han D, Jing L, Qin D. Metal–organic frameworks based on tetraphenylpyrazine-derived tetracarboxylic acid for electrocatalytic hydrogen evolution reaction and NAC sensing. CrystEngComm 2019. [DOI: 10.1039/c8ce01868e] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Tetraphenylpyrazine-derived tetracarboxylic acid-based new MOFs and their promising applications in the electrocatalytic hydrogen evolution reaction.
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Affiliation(s)
- Tao Wang
- Key Laboratory of Chemical Synthesis and Pollution Control of Sichuan Province
- School of Chemistry and Chemical Engineering
- China West Normal University
- Nanchong 637002
- P. R. China
| | - Kun Huang
- Key Laboratory of Chemical Synthesis and Pollution Control of Sichuan Province
- School of Chemistry and Chemical Engineering
- China West Normal University
- Nanchong 637002
- P. R. China
| | - Mengni Peng
- Key Laboratory of Chemical Synthesis and Pollution Control of Sichuan Province
- School of Chemistry and Chemical Engineering
- China West Normal University
- Nanchong 637002
- P. R. China
| | - Xianglin Li
- Key Laboratory of Chemical Synthesis and Pollution Control of Sichuan Province
- School of Chemistry and Chemical Engineering
- China West Normal University
- Nanchong 637002
- P. R. China
| | - Defang Han
- Key Laboratory of Chemical Synthesis and Pollution Control of Sichuan Province
- School of Chemistry and Chemical Engineering
- China West Normal University
- Nanchong 637002
- P. R. China
| | - Linhai Jing
- Key Laboratory of Chemical Synthesis and Pollution Control of Sichuan Province
- School of Chemistry and Chemical Engineering
- China West Normal University
- Nanchong 637002
- P. R. China
| | - Dabin Qin
- Key Laboratory of Chemical Synthesis and Pollution Control of Sichuan Province
- School of Chemistry and Chemical Engineering
- China West Normal University
- Nanchong 637002
- P. R. China
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8
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Wang DZ, Wang XF, Du JQ, Dong JL, Xie F. 2-(hydroxymethyl)-1H-benzo[d]imidazole-5-carboxylic acid as linker for Co(II)/Ni(II)/Cu(II) coordination polymers: Synthesis, structures and properties. J SOLID STATE CHEM 2018. [DOI: 10.1016/j.jssc.2017.12.007] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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9
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Effect of substituent groups on the structures of two semi-flexible bis(imidazole) directed Zn(II)-5-sulfoisophthalate coordination polymers: Syntheses, structures and photoluminescent properties. Polyhedron 2018. [DOI: 10.1016/j.poly.2017.09.049] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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10
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Zhang J, Gao LL, Zhai LJ, Wang XQ, Fan LM, Hu TP. Gas adsorption, magnetic, and fluorescent sensing properties of four coordination polymers based on 1,3,5-tris(4-carbonylphenyloxy)benzene and bis(imidazole) linkers. CrystEngComm 2018. [DOI: 10.1039/c8ce01421c] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Four 3D novel coordination polymers (CPs) have been synthesized under solvothermal conditions. Furthermore, gas sorption behaviors revealed that complex 1 has excellent selective separation for CO2/CH4.
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Affiliation(s)
- Jie Zhang
- Department of Chemistry
- College of Science
- North University of China
- Taiyuan 030051
- China
| | - Ling-Ling Gao
- Department of Chemistry
- College of Science
- North University of China
- Taiyuan 030051
- China
| | - Li-jun Zhai
- Department of Chemistry
- College of Science
- North University of China
- Taiyuan 030051
- China
| | - Xiao-Qing Wang
- Department of Chemistry
- College of Science
- North University of China
- Taiyuan 030051
- China
| | - Li-Ming Fan
- Department of Chemistry
- College of Science
- North University of China
- Taiyuan 030051
- China
| | - Tuo-Ping Hu
- Department of Chemistry
- College of Science
- North University of China
- Taiyuan 030051
- China
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11
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Lalegani A, Khaledi Sardashti M, Gajda R, Woźniak K. Synthesis and characterization of two new zinc(II) coordination polymers with bidentate flexible ligands: Formation of a 2D structure with (44.62)-sql topology. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.08.043] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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12
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Zhang J, Huo LQ, Gao LL, Wang XQ, Fan LM, Fang KG, Hu TP. Luminescent and magnetic properties of three novel metal–organic polymers based on a semi-rigid tripodal carboxylic ligand. Polyhedron 2017. [DOI: 10.1016/j.poly.2017.08.015] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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13
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A luminescent Zn(II)-based coordination polymer constructed by 5-((4-carboxyphenoxy)methyl)benzene-1,3-dioic acid and 4,4′-bipyridine for selective sensing of Fe 3+. Polyhedron 2017. [DOI: 10.1016/j.poly.2017.06.040] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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14
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Hu T, Wang X, Xue Z, Zhang X, Wang X. Structural control and magnetic properties of three Co(II) coordination polymers based on 6-(3,5-dicarboxylphenyl)nicotinic acid. Polyhedron 2017. [DOI: 10.1016/j.poly.2016.11.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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15
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Hu J, Yang F, Zhao J. Cd and Hg coordination complexes based on a heterocyclic multidentate ligand: Synthesis, structures and photoluminescence properties. JOURNAL OF CHEMICAL RESEARCH 2017. [DOI: 10.3184/174751917x14925986241052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The complexes [Cd(cpbi)Cl2]·(H2O), [Hg2(cpbi)2Cl4] and [Hg(cpbi)Br2] (cpbi = [5-chloro-2-(pyrazin-2-yl)-1H-benzoimidazole]) have been synthesised using solvent evaporation reactions and structurally characterised by single-crystal X-ray diffraction. The first complex displays a one-dimensional (1-D) chain structure, the second has a binuclear structure, while the third is mononuclear. The complexes show different luminescence properties.
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Affiliation(s)
- Jiyong Hu
- College of Material and Chemical Engineering, Henan University of Urban Construction, Pingdingshan 467036, Henan, P.R. China
| | - Fan Yang
- College of Material and Chemical Engineering, Henan University of Urban Construction, Pingdingshan 467036, Henan, P.R. China
| | - Jin'an Zhao
- College of Material and Chemical Engineering, Henan University of Urban Construction, Pingdingshan 467036, Henan, P.R. China
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Tahli A, Elshaarawy RF, Köc Ü, Kautz AC, Janiak C. A HKUST-1 MOF inclusion compound with in-situ reduced copper(I) as [Cu(NCCH3)4]+ cation complex in the octahedral A-type pore. Polyhedron 2016. [DOI: 10.1016/j.poly.2016.06.039] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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