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Das P, Chakraborty G, Roeser J, Vogl S, Rabeah J, Thomas A. Integrating Bifunctionality and Chemical Stability in Covalent Organic Frameworks via One-Pot Multicomponent Reactions for Solar-Driven H 2O 2 Production. J Am Chem Soc 2023; 145:2975-2984. [PMID: 36695541 DOI: 10.1021/jacs.2c11454] [Citation(s) in RCA: 20] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Multicomponent reactions (MCRs) can be used to introduce different functionalities into highly stable covalent organic frameworks (COFs). In this work, the irreversible three-component Doebner reaction is utilized to synthesize four chemically stable quinoline-4-carboxylic acid DMCR-COFs (DMCR-1-3 and DMCR-1NH) equipped with an acid-base bifunctionality. These DMCR-COFs show superior photocatalytic H2O2 evolution (one of the most important industrial oxidants) compared to the imine COF analogue (Imine-1). This is achieved with sacrificial oxidants but also in pure water and under an oxygen or air atmosphere. Furthermore, the DMCR-COFs show high photostability, durability, and recyclability. MCR-COFs thus provide a viable materials' platform for solar to chemical energy conversion.
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Affiliation(s)
- Prasenjit Das
- Department of Chemistry/Functional Materials, Technische Universität Berlin, 10623 Berlin, Germany
| | - Gouri Chakraborty
- BAM Federal Institute for Materials Research and Testing, Richard-Willstätter-Str. 11, 12489 Berlin, Germany
| | - Jérôme Roeser
- Department of Chemistry/Functional Materials, Technische Universität Berlin, 10623 Berlin, Germany
| | - Sarah Vogl
- Department of Chemistry/Functional Materials, Technische Universität Berlin, 10623 Berlin, Germany
| | - Jabor Rabeah
- Leibniz-Institut für Katalyse e.V. an der Universität Rostock, Albert-Einstein-Str. 29a, 18059 Rostock, Germany
| | - Arne Thomas
- Department of Chemistry/Functional Materials, Technische Universität Berlin, 10623 Berlin, Germany
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Sai Prasad M, Ghosh A, Dwivedi T, Chakraborty G, Das R, Biswas D, Nilaya J. 98/100Mo enrichment by infrared multi-photon dissociation of MoF6. Chem Phys Lett 2022. [DOI: 10.1016/j.cplett.2021.139262] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Chakraborty G, Das P, Mandal SK. Efficient and Highly Selective CO 2 Capture, Separation, and Chemical Conversion under Ambient Conditions by a Polar-Group-Appended Copper(II) Metal-Organic Framework. Inorg Chem 2021; 60:5071-5080. [PMID: 33703884 DOI: 10.1021/acs.inorgchem.1c00101] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A polar sulfone-appended copper(II) metal-organic framework (MOF; 1) has been synthesized from the dual-ligand approach comprised of tetrakis(4-pyridyloxymethylene)methane and dibenzothiophene-5,5'-dioxide-3,7-dicarboxylic acid under solvothermal conditions. This has been studied by different techniques that included single-crystal X-ray diffractometry, based on which the presence of Lewis acidic open-metal sites as well as polar sulfone groups aligned on the pore walls is identified. MOF 1 displays a high uptake of CO2 over N2 and CH4 with an excellent selectivity (S = 883) for CO2/N2 (15:85) at 298 K under flue gas combustion conditions. Additionally, the presence of Lewis acidic metal centers facilitates an efficient size-selective catalytic performance at ambient conditions for the conversion of CO2 into industrially valuable cyclic carbonates. The experimental investigations for this functional solvent-free heterogeneous catalyst are also found to be in good correlation with the computational studies provided by configurational bias Monte Carlo simulation for both CO2 capture and its conversion.
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Affiliation(s)
- Gouri Chakraborty
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
| | - Prasenjit Das
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
| | - Sanjay K Mandal
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
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Chakraborty G, Park IH, Medishetty R, Vittal JJ. Two-Dimensional Metal-Organic Framework Materials: Synthesis, Structures, Properties and Applications. Chem Rev 2021; 121:3751-3891. [PMID: 33630582 DOI: 10.1021/acs.chemrev.0c01049] [Citation(s) in RCA: 242] [Impact Index Per Article: 80.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Gouri Chakraborty
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
| | - In-Hyeok Park
- Graduate School of Analytical Science and Technology (GRAST), Chungnam National University, Daejeon 34134, South Korea
| | | | - Jagadese J. Vittal
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
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Das P, Chakraborty G, Tyagi S, Mandal SK. Design of Fluorescent and Robust Covalent Organic Framework Host Matrices for Illuminating Mechanistic Insight into Solvatochromic Decoding. ACS Appl Mater Interfaces 2020; 12:52527-52537. [PMID: 33181014 DOI: 10.1021/acsami.0c12785] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Two functional covalent organic frameworks (COFs), constructed from 3-connected triazine-based amine or hydrazine with linear dialdehyde, are decorated with molecular docking sites to showcase their solvatochromic decoding behavior toward volatile solvent molecules (VSMs). These luminescent and crystalline COFs, namely, COF-N and COF-NN, are characterized by numerous analytical techniques. After accommodation of different VSMs as guests, the inclusion compounds of COF-N and COF-NN display solvatochromism. More fascinatingly, the singlet energy, band gaps, and lifetime of these VSM-accommodated COF-N and COF-NN are linearly correlated with the properties of VSMs. Density functional theory (DFT) and Monte Carlo simulation studies further support the interaction of VSMs with COF-N and COF-NN. The presence of an extra amine functionality in COF-NN leads to the better interaction with VSMs and, therefore, results in different modes of interaction and correlation. Considering their inestimable chemical diversity, this study introduces a new path for finely tuned solvatochromic properties by COFs.
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Affiliation(s)
- Prasenjit Das
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
| | - Gouri Chakraborty
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
| | - Sparsh Tyagi
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
| | - Sanjay K Mandal
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
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Chakraborty G, Das P, Mandal SK. Polar Sulfone-Functionalized Oxygen-Rich Metal-Organic Frameworks for Highly Selective CO 2 Capture and Sensitive Detection of Acetylacetone at ppb Level. ACS Appl Mater Interfaces 2020; 12:11724-11736. [PMID: 32011848 DOI: 10.1021/acsami.9b22658] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
A rational combination of an oxygen-rich pyridyl substituted tetrapodal ligand, tetrakis(4-pyridyloxymethylene)methane (TPOM), and a polar sulfone-functionalized conjugated bent dicarboxylate linker, dibenzothiophene-5,5'-dioxide-3,7-dicarboxylic acid (H2(3,7-DBTDC)), with d10 metal centers, Zn(II) and Cd(II), has led to the construction of two new three-dimensional (3D) metal-organic frameworks,{[Zn2(TPOM)(3,7-DBTDC)2]·7H2O·DMA}n (1) and {[Cd2(TPOM)(3,7-DBTDC)2]·6H2O·3DMF}n (2). Single-crystal X-ray analysis indicates that 1 is a 3D framework with a dinuclear repeating unit having two different Zn(II) centers (tetrahedral and square pyramidal) and 2 is a 3D framework comprised of a dinuclear repeating unit with one crystallographically independent distorted pentagonal bipyramidal Cd(II) coordinated to chelating/bridging carboxylates and nitrogen atoms of the TPOM ligand. In both cases, the pores are aligned with oxygen atoms of the TPOM ligand and decorated with polar sulfone moieties. On the basis of the stability established by thermogravimetric analysis and powder X-ray diffraction (PXRD) and the presence of large solvent accessible voids (25.4% for 1 and 40.6% for 2), gas sorption studies of different gases (N2, CO2, and CH4) and water vapor have been explored for both 1 and 2. The CO2 sorption isotherm depicts type I isotherm with an uptake of 93.6 cm3 g-1 (for 1) and 100.6 cm3 g-1 (for 2) at 195 K. Additionally, sorption of CO2 is highly selective over that of N2 and CH4 for both 1 and 2 due to the strong quadrupolar interactions between sulfone moieties and CO2 molecules. Configurational bias Monte Carlo (CBMC) molecular simulation has further justified the highly selective CO2 capture. On the other hand, the luminescence nature of 1 and 2 has been employed for highly selective detection of acetylacetone in aqueous methanol with a limit of 59 ppb in 1 and 66 ppb in 2, which are among the best reported values so far in the literature. The Stern-Volmer plots, spectral overlap, density functional theory calculations, CBMC simulation, and time-resolved lifetime measurements have been utilized for an extensive mechanistic study. The exclusive selectivity for acetylacetone in 1 and 2 have been confirmed by competitive selectivity test. Both exhibited good recyclability and stability after sensing experiments analyzed by fluorescence, PXRD, and field emission scanning electron microscopy studies.
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Affiliation(s)
- Gouri Chakraborty
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
| | - Prasenjit Das
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
| | - Sanjay K Mandal
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
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Das P, Chakraborty G, Mandal SK. Comprehensive Structural and Microscopic Characterization of an Azine-Triazine-Functionalized Highly Crystalline Covalent Organic Framework and Its Selective Detection of Dichloran and 4-Nitroaniline. ACS Appl Mater Interfaces 2020; 12:10224-10232. [PMID: 32028761 DOI: 10.1021/acsami.9b17452] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
In recent years, luminescent covalent organic frameworks (COFs) constructed with nitrogen-rich building units have been the target for selective detection of electron-deficient pollutants to serve for a clean environment. In order to contribute to these imperative applications, an azine-triazine-based COF (ANCOF) has been solvothermally synthesized and structurally characterized by a variety of analytical methods for comprehensive studies. ANCOF possesses micropores with a rare ABAB stacking, high thermal and chemical stabilities, and a Brunauer-Emmett-Teller surface area of 565 m2 g-1. On the other hand, ANCOF exhibits excellent luminescent property in the presence of different solvents marked by the wavelength shift due to polarity. Exploiting the bluish-white emission of ANCOF in aqueous medium, it has been found to be an excellent probe for the discriminative and selective detection of dichloran (DCNA) and 4-nitroaniline (4-NA) with detection limits of 142 and 89 ppb, respectively. A distinguishable color change for DCNA and 4-NA has been reflected by UV illumination, fluorescence microscopy, and a handy paper strip method. Time-resolved fluorescence studies, spectral overlap, density functional theory, and configurational bias Monte Carlo molecular simulation have been utilized to understand the mechanism of action and interaction of DCNA and 4-NA with the host ANCOF. The selectivity of ANCOF toward DCNA and 4-NA in the presence of other analytes and the recyclability after sensing experiments have been successfully demonstrated. Furthermore, the stability of ANCOF has been confirmed by powder X-ray diffraction and field emission scanning electron microscopy with good retention of crystallinity and morphology. To the best of our knowledge, this is the first COF employed for the detection of amine derivatives in aqueous solution combining both experimental and computational studies.
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Affiliation(s)
- Prasenjit Das
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
| | - Gouri Chakraborty
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
| | - Sanjay K Mandal
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
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Chakraborty G, Das P, Mandal SK. Structural Diversity in Luminescent MOFs Containing a Bent Electron-rich Dicarboxylate Linker and a Flexible Capping Ligand: Selective Detection of 4-Nitroaniline in Water. Chem Asian J 2019; 14:3712-3720. [PMID: 31369696 DOI: 10.1002/asia.201900866] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Indexed: 02/02/2023]
Abstract
A combination of a bent bis(naphthalene) and hydroxy-based dicarboxylate linker and a flexible bis(tridentate)polypyridyl ligand has been employed to self-assemble with two different d10 metal centers, ZnII and CdII , to form structurally diversified luminescent metal-organic frameworks, [Zn2 (tpbn)(mbhna)2 (H2 O)2 ]⋅4 H2 O⋅1.5DMF (1) and {[Cd2 (tpbn)(mbhna)2 ]⋅2DMF}n (2), respectively (where, tpbn=N,N',N'',N'''-tetrakis(pyridine-2-ylmethyl)butane-1,4-diamine and H2 mbhna=4,4'-methylene-bis[3-hydroxy-2-naphthalene carboxylic acid]). Both 1 and 2 are characterized and analyzed by various analytical techniques including single-crystal X-ray diffractometry. Their excellent emissive nature is studied in different solvents and further utilized to selectively detect aromatic amines, particularly 4-nitroaniline in water with detection limits at sub-ppm level. The difference in sensing activity of 1 and 2 toward 4-NA is corroborated well with their structures. The mechanism of action has been established through Stern-Volmer plot, spectral overlap, time-resolved lifetime studies and HOMO-LUMO energy calculations. In addition, 1 and 2 are found to be recyclable and display good stability after sensing experiments.
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Affiliation(s)
- Gouri Chakraborty
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli P.O., S.A.S. Nagar Mohali, Punjab, 140306, India
| | - Prasenjit Das
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli P.O., S.A.S. Nagar Mohali, Punjab, 140306, India
| | - Sanjay K Mandal
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli P.O., S.A.S. Nagar Mohali, Punjab, 140306, India
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Chakraborty G, Das P, Mandal SK. Strategic Construction of Highly Stable Metal-Organic Frameworks Combining Both Semi-Rigid Tetrapodal and Rigid Ditopic Linkers: Selective and Ultrafast Sensing of 4-Nitroaniline in Water. ACS Appl Mater Interfaces 2018; 10:42406-42416. [PMID: 30407780 DOI: 10.1021/acsami.8b15894] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
In this work, we have designed two new 3D metal-organic frameworks (MOFs), {Zn4(TPOM)(1,4-NDC)4} n (1) and {Ni2(TPOM)(1,4-NDC)2(H2O)2} n (2), utilizing both semi-rigid tetrapodal neutral linker, tetrakis(4-pyridyloxymethylene)methane (TPOM) and rigid ditopic anionic linker, 1,4-naphthalene dicarboxylic acid (H2(1,4-NDC)). On the basis of the single-crystal X-ray diffraction, 1 has a 3D structure with star-shaped pores arising from four-fold symmetry due to the presence of a paddle-wheel core [Zn2(O2CC12H6)4(C6H4N)2] as a subunit, whereas 2 consists of a zig-zag 3D framework with strong hydrogen bonding between the coordinated water molecules and coordinated carboxylate groups. Their thermogravimetric analysis indicates an extraordinary thermal stability: 1 up to 400 °C and 2 up to 350 °C. In addition to elemental microanalysis and spectroscopic characterization (UV-vis and infra-red spectroscopy), the bulk phase purity of 1 and 2 as well as hydrolytic stability of 1 are established by powder X-ray diffraction. Exploiting the luminescence nature of 1, both solvent-dependent fluorescence properties and sensing of various amines in aqueous medium are demonstrated. It exhibits good sensing ability toward 4-nitroaniline (4-NA) and 2,6-dichloro-4-nitroaniline (2,6-DCNA; a broad spectrum pesticide belonging to toxicity class III) with the lowest detection limit of 88 ppb and 0.28 ppm, respectively. The mechanism of action has been established through Stern-Volmer plots, time-resolved fluorescence studies, spectral overlap, and density functional theory calculations. The recyclability and stability of 1 after sensing experiments also reveal no change in its crystallinity. Furthermore, selectivity test and time-dependent detection for 4-NA have been successfully demonstrated. For practical applications, naked eye detection of 4-NA using test paper strips is also displayed.
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Affiliation(s)
- Gouri Chakraborty
- Department of Chemical Sciences , Indian Institute of Science Education and Research Mohali , Sector 81, Manauli PO , S.A.S. Nagar, Mohali , Punjab 140306 , India
| | - Prasenjit Das
- Department of Chemical Sciences , Indian Institute of Science Education and Research Mohali , Sector 81, Manauli PO , S.A.S. Nagar, Mohali , Punjab 140306 , India
| | - Sanjay K Mandal
- Department of Chemical Sciences , Indian Institute of Science Education and Research Mohali , Sector 81, Manauli PO , S.A.S. Nagar, Mohali , Punjab 140306 , India
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Chakraborty G, Mandal SK. Design and Development of Fluorescent Sensors with Mixed Aromatic Bicyclic Fused Rings and Pyridyl Groups: Solid Mediated Selective Detection of 2,4,6-Trinitrophenol in Water. ACS Omega 2018; 3:3248-3256. [PMID: 31458581 PMCID: PMC6641284 DOI: 10.1021/acsomega.8b00080] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Accepted: 02/23/2018] [Indexed: 05/12/2023]
Abstract
For a strategic incorporation of both π-electron-rich moieties and Lewis basic moieties acting as hydrogen bonding recognition sites in the same molecule, two new fluorescent sensors, N,N'-bis(anthracen-9-ylmethyl)-N,N'-bis(pyridin-2-ylmethyl)butane-1,4-diamine (banthbpbn, 1) and N,N'-bis(naphthalen-1-ylmethyl)-N,N'-bis(pyridin-2-ylmethyl)butane-1,4-diamine (bnaphbpbn, 2), have been developed for the selective detection of highly explosive 2,4,6-trinitrophenol (TNP) in water. Each of the two identical ends of these sensors that are linked with a flexible tetra-methylene spacer contains a mixed aromatic bicyclic fused ring (anthracene or naphthalene) and a pyridyl group. These are synthesized via the simple reduced Schiff base chemistry, followed by the nucleophilic substitution reaction under basic conditions in high yields. Both 1 and 2 were characterized by Fourier transform infrared, UV-vis, and NMR (1H and 13C) spectroscopy, and high-resolution mass spectrometry. The bulk phase purity of 1 and 2 and their stability in water were confirmed by powder X-ray diffraction (PXRD). Utilizing the effect of solvents on their emission spectra as determined by fluorescence spectroscopy, spectral responses for 1 and 2 toward various nitro explosives were recorded to determine a detection limit of 0.6 and 1.6 ppm, respectively, for TNP in water via the "turn-off" quenching response. Also, the detailed mechanistic investigation for their mode of action through spectral overlap, lifetime measurements, Stern-Volmer plots, and density functional theory calculations reveals that resonance energy transfer and photoinduced electron transfer processes, and electrostatic interactions are the key aspects for the turn-off response toward TNP by 1 and 2. In addition, the selectivity for TNP has been found to be more in 1 compared to 2. Both exhibit good recyclability and stability after sensing experiments, which is confirmed by PXRD and field-emission scanning electron microscopy.
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Chakraborty G, Mandal SK. Design and development of luminescent MOFs for sensing application. Acta Crystallogr A Found Adv 2017. [DOI: 10.1107/s205327331708367x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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Chakraborty G, Mandal SK. Neutral Luminescent Metal-Organic Frameworks: Structural Diversification, Photophysical Properties, and Sensing Applications. Inorg Chem 2017; 56:14556-14566. [DOI: 10.1021/acs.inorgchem.7b02264] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Gouri Chakraborty
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
| | - Sanjay K. Mandal
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
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Luo D, Chakraborty G, Ingoglia NA. Post-translational modification of proteins by arginine and lysine following crush injury and during regeneration of rat sciatic nerves. Restor Neurol Neurosci 2012; 2:53-61. [PMID: 21551586 DOI: 10.3233/rnn-1990-2201] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Following crush injury to rat sciatic nerves, a crude fraction of the 150,000 g supernatant can post-translationally incorporate [3H]Arg and [3H]Lys into endogenous proteins in amounts approximately 10 times uninjured control nerves. These increases occur in the proximal nerve stump within 2 h of injury and 2 weeks later in a distal segment of nerve containing the tips of the regenerating axons. In the present experiments, the endogenous nerve proteins modified by Arg or Lys in these nerve segments have been identified using two-dimensional polyacrylamide gel electrophoresis. The fraction used to assay for protein modification, the void volume of a Sephacryl S-300 column, was found to contain only a few proteins visible by Coomassie blue staining, one of which is likely to be albumin (68 kDa, pI 6.4). While this protein was modified by both Arg and Lys, the majority of label was found in areas not showing Coomassie blue staining. This indicates that of the many potential targets of post-translational arginylation and lysylation, most are proteins of relatively low abundance. A variety of proteins were modified by Arg or Lys alone while others were modified by both Arg and Lys. A high molecular weight protein (175 kDa, pI 9.0) was modified only by Lys and only at 2 h post crush. Of a variety of modified proteins of approximately 17 kDa one (pI 6.3) was modified by both Arg and Lys and at both time points, while another (pI 9.0) was modified at both time points, but only by Lys. The results show that Arg and Lys can be added post-translationally to a large number of low abundance, soluble sciatic nerve proteins, and that some of those proteins are modified only by Arg or Lys while others are modified by both Arg and Lys. Also, the modification of certain proteins appears to be associated specifically with the immediate response of a nerve to injury (e.g. 88 kDa, pI 7.1) while others are associated with the regenerative period (e.g. 56 kDa, pI 7.4).
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Affiliation(s)
- D Luo
- Departments of Physiology and Neuroscience, New Jersey Medical School, UMDNJ, Newark, NJ 07103-2757 (U.S.A.)
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Abstract
Unsupervised learning is used to categorize multidimensional data into a number of meaningful classes on the basis of the similarity or correlation between individual samples. In neural-network implementation of various unsupervised algorithms such as principal component analysis (PCA), competitive learning or self-organizing map (SOM), sample vectors are normalized to equal lengths so that similarity could be easily and efficiently obtained by their dot products. In general, sample vectors span the whole multidimensional feature space and existing normalization methods distort the intrinsic patterns present in the sample set. In this work, a novel method of normalization by mapping the samples to a new space of one more dimension has been proposed. The original distribution of the samples in the feature space is shown to be almost preserved in the transformed space. Simple rules are given to map from original space to the normalized space and vice versa.
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Ellingson BM, Pope WB, Lai A, Nghiemphu PL, Cloughesy TF, Juhasz C, Mittal S, Muzik O, Chugani DC, Chakraborty PK, Bahl G, Barger GR, Carrillo JA, Lai A, Nghiemphu P, Tran A, Moftakhar P, Cloughesy TF, Pope WB, Bruggers C, Moore K, Khatua S, Gumerlock MK, Stolzenberg E, Fung KM, Smith ML, Kedzierska K, Chacko G, Epstein RB, Holter J, Parvataneni R, Kadambi A, Park I, Elkhaled A, Essock-Burns E, Khayal I, Butowski N, Lamborn K, Chang S, Nelson S, Sanverdi E, Ozgen B, Oguz KK, Soylemezoglu F, Mut M, Zhu JJ, Pfannl R, Do-Dai D, Yao K, Mignano J, Wu JK, Linendoll N, Beal K, Chan T, Yamamda Y, Holodny A, Gutin PH, Zhang Z, Young RJ, Lupo JM, Essock-Burns E, Cha S, Chang SM, Butowski N, Nelson SJ, Laperriere N, Perry J, Macdonald D, Mason W, Easaw J, Del Maestro R, Kucharczyk W, Hussey D, Greaves K, Moore S, Pouliot JF, Rauschkolb PK, Smith SD, Belden CJ, Lallana EC, Fadul CE, Bosscher L, Slot M, Sanchez E, Uitdehaag BM, Vandertop WP, Peerdeman SM, Blumenthal DT, Bokstein F, Artzi M, Palmon M, Aizenstein O, Sitt R, Gurevich K, Kanner A, Ram Z, Corn B, Ben Bashat D, Slot M, Bosscher L, Sanchez E, Uitdehaag BM, Vandertop WP, Peerdeman SM, Martinez N, Gorniak R, Tartaglino L, Scanlan M, Glass J, Kleijn A, Chen JW, Sun PZ, Buhrman J, Rabkin SD, Weissleder R, Martuza RL, Lamfers ML, Fulci G, Lallana EC, Brong KA, Hekmatyar K, Jerome N, Wilson M, Fadul CE, Kauppinen RA, Mok K, Valenca MM, Sherafat E, Olivier A, Pentsova E, Rosenblum M, Holodny A, Palomba L, Omuro A, Murad GJ, Yachnis AT, Dunbar EM, Essock-Burns E, Li Y, Lupo J, Polley MY, Butowski N, Cha S, Chang S, Nelson S, Kohler N, Quisling R, Dunbar EM, Swanson KR, Gu S, Chakraborty G, Alessio A, Claridge J, Rockne RC, Muzi M, Krohn KA, Spence AM, Alvord EC, Anderson AR, Kinahan P, Boone AE, Rockne RC, Mrugala MM, Swanson KR, Gutova M, Khankaldyyan V, Herrmann KA, Harutyunyan I, Abramyants Y, Annala AJ, Najbauer J, Moats RA, Shackleford GM, Barish ME, Aboody KS. Radiology. Neuro Oncol 2010. [DOI: 10.1093/neuonc/noq116.s17] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Ghatak S, Chakraborty G, Meikap AK, Woods T, Babu R, Blau WJ. Synthesis and characterization of polyaniline/carbon nanotube composites. J Appl Polym Sci 2010. [DOI: 10.1002/app.31962] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Chakraborty G, Ghatak S, Meikap AK, Woods T, Babu R, Blau WJ. Characterization and electrical transport properties of polyaniline and multiwall carbon nanotube composites. ACTA ACUST UNITED AC 2010. [DOI: 10.1002/polb.22042] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Gupta K, Chakraborty G, Ghatak S, Jana PC, Meikap AK. Synthesis of copper chloride and cobalt chloride doped polyanilines and their magnetic and alternating-current transport properties. J Appl Polym Sci 2010. [DOI: 10.1002/app.31380] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Sershen H, Shearman E, Fallon S, Chakraborty G, Smiley J, Lajtha A. The effects of acetaldehyde on nicotine-induced transmitter levels in young and adult brain areas. Brain Res Bull 2009; 79:458-62. [DOI: 10.1016/j.brainresbull.2009.04.005] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2009] [Accepted: 04/07/2009] [Indexed: 12/30/2022]
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Chakraborty G, Sarkar A, Ghosh P, Meikap A, Chowdhury P. Frequency-dependent resistivity and magnetoresistivity of iodine doped conducting polyaniline. POLYM ENG SCI 2009. [DOI: 10.1002/pen.21332] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Chakraborty G, Reddy R, Drivas A, Ledeen RW. Interleukin-2 receptors and interleukin-2-mediated signaling in myelin: activation of diacylglycerol kinase and phosphatidylinositol 3-kinase. Neuroscience 2003; 122:967-73. [PMID: 14643763 DOI: 10.1016/j.neuroscience.2003.09.003] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
Myelin was previously shown to possess neurotransmitter and cytokine receptors that trigger well-defined signaling mechanisms within the multilamellar structure. The present study reveals the presence of an interleukin-2 (IL-2) receptor in isolated mouse CNS myelin that responds to recombinant mouse IL-2 by activating diacylglycerol kinase (DAGK) and phosphoinositide 3-kinase (PI3K); additional evidence suggests participation by protein tyrosine kinase. Activation of myelin DAGK by IL-2 occurred in brain stem tissue mince and was blocked by chelerythrin chloride, indicating an essential role for myelin-localized protein kinase C. Two inhibitors of PI3K, wortmannin and LY294002, blocked endogenous PI3K as well as that enhanced by IL-2. Activation of PI3K by IL-2 was also blocked by tyrphostin A25, a selective inhibitor of PTK, suggesting activation of the latter by IL-2 is upstream to PI3K activation. This reaction resulted in tyrosine phosphorylation of a protein tentatively identified as the p85 subunit of PI3K. Developmental changes were noted in that receptor density and signaling activity were robust during the period of rapid myelination and declined rapidly thereafter.
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Affiliation(s)
- G Chakraborty
- Department of Neurosciences, New Jersey Medical School, UMDNJ, 185 South Orange Avenue, Newark, NJ 07103, USA
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Chakraborty G, Mekala P, Yahya D, Wu G, Ledeen RW. Intraneuronal N-acetylaspartate supplies acetyl groups for myelin lipid synthesis: evidence for myelin-associated aspartoacylase. J Neurochem 2001; 78:736-45. [PMID: 11520894 DOI: 10.1046/j.1471-4159.2001.00456.x] [Citation(s) in RCA: 233] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Despite its growing use as a radiological indicator of neuronal viability, the biological function of N-acetylaspartate (NAA) has remained elusive. This is due in part to its unusual metabolic compartmentalization wherein the synthetic enzyme occurs in neuronal mitochondria whereas the principal metabolizing enzyme, N-acetyl-L-aspartate amidohydrolase (aspartoacylase), is located primarily in white matter elements. This study demonstrates that within white matter, aspartoacylase is an integral component of the myelin sheath where it is ideally situated to produce acetyl groups for synthesis of myelin lipids. That it functions in this manner is suggested by the fact that myelin lipids of the rat optic system are well labeled following intraocular injection of [14C-acetyl]NAA. This is attributed to uptake of radiolabeled NAA by retinal ganglion cells followed by axonal transport and transaxonal transfer of NAA into myelin, a membrane previously shown to contain many lipid synthesizing enzymes. This study identifies a group of myelin lipids that are so labeled by neuronal [14C]NAA, and demonstrates a different labeling pattern from that produced by neuronal [14C]acetate. High performance liquid chromatographic analysis of the deproteinated soluble materials from the optic system following intraocular injection of [14C]NAA revealed only the latter substance and no radiolabeled acetate, suggesting little or no hydrolysis of NAA within mature neurons of the optic system. These results suggest a rationale for the unusual compartmentalization of NAA metabolism and point to NAA as a neuronal constituent that is essential for the formation and/or maintenance of myelin. The relevance of these findings to Canavan disease is discussed.
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Affiliation(s)
- G Chakraborty
- Department of Neurosciences, New Jersey Medical School, Newark, New Jersey 07103, USA
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24
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Cunningham MA, Gaeth GJ, Juang C, Chakraborty G. Using choice-based conjoint to determine the relative importance of dental benefit plan attributes. J Dent Educ 1999; 63:391-9. [PMID: 10410159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/13/2023]
Abstract
The purpose of this study was to use conjoint analysis to determine the importance of specific dental benefit plan features for University of Iowa (UI) staff and to build a model to predict enrollment. From a random sample of 2000 UI staff, 40 percent responded (N = 773). The survey instrument was developed using seven attributes (five dental benefit plan features and two facility characteristics) each offered at three levels (e.g., premium = $20, $15, $10/month). Pilot testing was used to find a realistic range of plan options. Twenty-seven hypothetical dental benefit plans were developed using fractional factorial combinations of the three levels for each of the seven attributes. For all of the hypothetical plans, dental care was to be provided in the UI predoctoral dental clinic. Plan profiles were arranged four per page by combining the existing plan with three hypothetical plans, for a total of nine pages. Respondents' task was to select one plan from each set of four. A regression-like statistical model (Multinomial Logit) was used to estimate importance of each attribute and each attribute level. Relative importance (and coefficients) for each of the seven attributes are as follows: maximum annual benefit (.98), orthodontic coverage (.72), routine restorative (.70), major restorative (.67), time to complete treatment (.61), clinic hours of operation (.47), premium (.18). For each attribute, relative importance of each of three levels will also be presented. These coefficients for each level are used to predict enrollment for plans with specific combinations of the dental benefit plan features.
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MESH Headings
- Algorithms
- Community Participation
- Decision Making
- Dental Care
- Dental Clinics
- Dental Restoration, Permanent
- Fees and Charges
- Forecasting
- Health Benefit Plans, Employee/classification
- Health Benefit Plans, Employee/economics
- Health Benefit Plans, Employee/statistics & numerical data
- Humans
- Insurance Benefits
- Insurance, Dental/classification
- Insurance, Dental/economics
- Insurance, Dental/statistics & numerical data
- Iowa
- Logistic Models
- Marketing of Health Services
- Models, Econometric
- Orthodontics, Corrective
- Pilot Projects
- Schools, Dental
- Time Factors
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Affiliation(s)
- M A Cunningham
- Department of Preventive and Community Dentistry, University of Iowa, USA.
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Cunningham MA, Gaeth GJ, Juang C, Chakraborty G. Using choice-based conjoint to determine the relative importance of dental benefit plan attributes. J Dent Educ 1999. [DOI: 10.1002/j.0022-0337.1999.63.5.tb03285.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Abstract
Previous studies on the origin of myelin phosphoinositides involved in signaling mechanisms indicated axon to myelin transfer of phosphatidylinositol followed by myelin-localized incorporation of axon-derived phosphate groups into phosphatidylinositol 4-monophosphate and phosphatidylinositol 4,5-bisphosphate. This is in agreement with other studies showing the presence of phosphorylating activity in myelin that converts phosphatidylinositol into the mono-and diphospho derivatives. It was also found that the second messenger, inositol 1,4,5-trisphosphate, is hydrolyzed to inositol 1,4-bisphosphate by a myelin-localized enzyme. The present study was undertaken to determine the locus of the remaining reactions leading to formation of free inositol and completion of the cycle by resynthesis of phosphatidylinositol. The latter reaction was found to occur preferentially in isolated axons, and to a limited extent if at all in myelin. On the other hand, hydrolytic reactions which sequentially convert inositol 1,4,5-trisphosphate to inositol 1,4-bisphosphate, inositol 1-phosphate, and free inositol were found to occur more prominently in myelin. Thus, restoration of phosphoinositides following signal-induced breakdown of PIP2 in myelin is seen as requiring metabolic interplay between myelin and axon.
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Affiliation(s)
- G Chakraborty
- Department of Neurosciences, New Jersey Medical School, UMDNJ, Newark 07103, USA
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Abstract
The mechanism of focal demyelination in multiple sclerosis has been a long-standing enigma of this disorder. Cytokines, a diverse family of signalling molecules, are viewed as potential mediators of the process based on clinical observations and studies with animal models and tissue/cell culture systems. Myelin and oligodendrocyte (OL) destruction occur in cultured preparations subjected to cytokines such as tumor necrosis factor-alpha (TNF alpha) and lymphotoxin (LT). Many studies have shown these and other cytokines to be elevated at lesion sites and in the CSF of multiple sclerosis (MS) patients, with similar findings in animal models. Some variability in the nature of MS lesion formation has been reported, both OLs and myelin being primary targets. To account for myelin destruction in the presence of apparently functional OLs we hypothesize that cytokines such as TNF alpha and LT alpha contribute to myelin damage through triggering of specific reactions within the myelin sheath. We further propose that neutral sphingomyelinase (SMase) is one such enzyme, two forms of which have been detected in purified myelin. An additional event is accumulation of cholesterol ester, apparently a downstream consequence of cytokine-induced SMase. The resulting lipid changes are viewed as potentially destabilizing to myelin, which may render it more vulnerable to attack by invading and resident phagocytes.
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Affiliation(s)
- R W Ledeen
- Department of Neurosciences, New Jersey Medical School, UMDNJ, Newark 07103, USA.
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Adhya S, Chakraborty G, Hajra B, Bhattacharya S, Sikdar PK, Sinha S, Banerjee PP, Ghosh E, Chakraborty P. Serology and immunoglobulin profile in rheumatoid arthritis. INDIAN J PATHOL MICR 1998; 41:43-7. [PMID: 9581076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
One hundred and twenty cases of clinically diagnosed rheumatoid arthritis, 80 non-rheumatoid cases suffering from various other diseases and 40 healthy individuals were investigated for the presence of rheumatoid factor, quantitation of serum immunoglobulin, demonstration of ANA and LE cell phenomenon. Microlatex agglutination test of serum for rheumatoid factor showed 56.6% positivity in rheumatoid group and 3.7% positivity in non-rheumatoid group. All three serum immunoglobulins (IgG, IgM, IgA) were raised in serum in significant titre in cases of rheumatoid arthritis, whereas only IgA lever was elevated in the group of non-rheumatoid diseases. ANA and LE cell phenomenon were observed in 11.7% and 4.4% cases of rheumatoid arthritis who had severe underlying disease. In non-rheumatoid group, only one of 6 cases of systemic lupus erythematosus showed rheumatoid factor and that too in an insignificant titre (less than 1:20). Synovium and synovial fluid contained plenty of plasma cells and lymphocytes. It has been observed that RF appears first in synovial fluid and it may take several months to a year to attain detectable level in serum.
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Affiliation(s)
- S Adhya
- Department of Microbiology, Medical College, Calcutta
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Chakraborty P, Sinha S, Adhya S, Chakraborty G, Bhattacharya P. Toxoplasmosis in women of child bearing age and infant follow up after in-utero treatment. Indian J Pediatr 1997; 64:879-82. [PMID: 10771933 DOI: 10.1007/bf02725516] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
A total of 540 women (including 70 pregnant cases) of child bearing age with bad obstetrical history were tested serologically for anti-toxoplasma antibody using microlatex agglutination test. Forty two women including 5 cases of pregnancy were found to be seropositive in a titre of 1:32 or more. Maximum prevalence (10.2%) and highest titer of anti-toxoplasma antibodies were observed in women of 35-42 years age group. The overall prevalence of toxoplasmosis in these women was 7.7%, whereas it was 7.1% in pregnant women. Further studies are needed to estimate the exact rate of prevalence of infection. Of the 70 pregnant women, 5 were seropositive and two of them acquired infection during pregnancy which was detected by IgM immunosorbent assay. Seropositive pregnant women were treated using combined regimen of sulfadiazine and pyrimethamine. Four infected women with pregnancy were followed up and one did not turn up subsequently. There was spontaneous abortion in one case and in 3 other cases full term normal babies were delivered. Incidence of toxoplasmosis in women is low because of infrequent and uncommon practices of ingesting undercooked or uncooked food stuff specially meat by a substantial number of the population surveyed.
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Affiliation(s)
- P Chakraborty
- Department of Microbiology, Medical College, Calcutta
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30
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Abstract
Purified myelin from mouse brain was found to contain two forms of neutral sphingomyelinase, one Mg2+ dependent and the other Mg2+ independent. The former had a pH optimum of 7.5 and Km of 0.35 mM, whereas the corresponding values for the latter were pH 8.0 and Km 3.03 mM. Specific activity of the Mg(2+)-dependent enzyme showed a rostral-caudal gradient, ranging from 75 nmol/mg protein/hr in myelin from cerebral hemispheres to 21 nmol/mg protein/hr in myelin from spinal cord. Relative specific activity was approximately 20% that of brain stem or cerebral hemisphere homogenate. Treatment of myelin with taurocholate or high salt concentration did not significantly reduce activity of the Mg(2+)-dependent enzyme. The activity of that enzyme did not change with time or in the presence or absence of protease inhibitors; by contrast, that of Mg(2+)-independent enzyme decreased sharply in the absence of protease inhibitors but rose in their presence. To test for the effect of tumor necrosis factor-alpha (TNF alpha) on myelin sphingomyelinase, mouse brain myelin was labeled in vivo by intracerebral injection of [3H]acetate into 18-20-day-old mice. After 40 hr, brain stems were removed, minced, and treated with TNF alpha in Krebs-Ringer solution, after which myelin was immediately isolated. Separation and counting of individual lipids revealed TNF alpha treatment to cause increased labeling of myelin ceramide and cholesterol ester with concomitant decrease in myelin sphingomyelin. Western blotting of myelin proteins using antibodies to the two TNF alpha receptors as probes revealed the presence of the p75 receptor. Implications of these findings in relation to possible mechanisms of autoimmune demyelination are discussed.
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Affiliation(s)
- G Chakraborty
- Department of Neurosciences, New Jersey Medical School, Newark 07103, USA
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Abstract
This study was undertaken to characterize the enzymatic properties of the particulate guanylyl cyclase previously shown to be present at a high level of activity in purified rat brain myelin. Significant activation was achieved by both Lubrol-PX and Triton X-100, the latter being somewhat more effective. A pH optimum of 7.8 was observed, compared to 7.4 for microsomes. Employing 1.2 mM GTP with 1% Triton X-100, linearity of response was observed up to 60 min and approximately 1.2 mg of myelin protein. Kinetic analysis revealed Km values of 0.258mM and 0.486mM for myelin and microsomes, respectively, similar values being obtained by Lineweaver-Burke analysis or Direct Linear Plot. Vmax values were 20 and 266 pmol/mg protein/min for myelin and microsomes, respectively. Washing of the myelin with 0.5 M NaCl or 0.1% Na taurocholate did not remove a significant amount of guanylyl cyclase activity, indicating the enzyme to be intrinsic to the myelin sheath.
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Affiliation(s)
- M Grabow
- Department of Neurosciences, New Jersey Medical School, UMDNJ, Newark 07103, USA
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Licata JW, Mowen JC, Chakraborty G. Diagnosing perceived quality in the medical service channel. J Health Care Mark 1995; 15:42-9. [PMID: 10154643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
Affiliation(s)
- J W Licata
- Louisiana State University, Department of Marketing, Baton Rouge, USA
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Chakraborty G, Ettenson R, Gaeth G. How consumers choose health insurance. J Health Care Mark 1995; 14:21-33. [PMID: 10134041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
Abstract
The authors used choice-based conjoint analysis to model consumers' decision processes when evaluating and selecting health insurance in a multiplan environment. Results indicate that consumer choice is affected by as many as 19 attributes, some of which have received little attention in previous studies. Moreover, the importance of the attributes varies across different demographic segments, giving marketers several targeting opportunities.
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Yu M, Chakraborty G, Grabow M, Ingoglia NA. Serine protease inhibitors block N-terminal arginylation of proteins by inhibiting the arginylation of tRNA in rat brains. Neurochem Res 1994; 19:105-10. [PMID: 8139756 DOI: 10.1007/bf00966736] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
The tRNA mediated, posttranslational, N-terminal arginylation of proteins occurs in all eukaryotic cells. In nervous tissue, these reactions can be inhibited by endogenous molecules with a molecular weight of between one thousand and five thousand. In the present experiments, exogenous serine protease inhibitors (10(-5) M or less) but not other types of protease inhibitors, were found to be able to block the arginylation of protein in extracts of rat brain homogenates. Inhibition was not by the usual mode of action of protease inhibitors, but by interfering (non-competitively) with the charging of tRNA. Since arginylated proteins are rapidly ubiquitinated and degraded by cytosolic proteases, serine protease inhibitors may act to stabilize proteins by a dual mechanism of inhibiting arginylation as well as inhibiting serine proteases.
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Affiliation(s)
- M Yu
- Department of Physiology, New Jersey Medical School, Newark 07103-2757
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Xu NS, Chakraborty G, Hassankhani A, Ingoglia NA. N-terminal arginylation of proteins in explants of injured sciatic nerves and embryonic brains of rats. Neurochem Res 1993; 18:1117-23. [PMID: 8255362 DOI: 10.1007/bf00978361] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Posttranslational modification of proteins by arginine and lysine has been demonstrated in crude extracts of vertebrate nerves and brain but not in intact cells. In the present experiments we have exploited the fact that Arg is added posttranslationally only at the N-terminus of target proteins, to demonstrate these reactions in intact cells of sciatic nerves and embryonic brains of rats. Sciatic nerves were crushed in anaesthesized rats and 2 hrs later segments of nerve, including the site of the crush, were removed and incubated in media containing [3H]Arg. Incorporation of [3H]Arg into total proteins was analyzed by acid precipitation and the presence of label at the N-terminus was determined by a modification of the Edman degradation procedure. Approximately 25% of protein bound [3H]Arg was released from the N-terminus by the Edman reaction indicating that it was added posttranslationally rather than through protein synthesis. N-terminal labeling was not detectable in nerves not crushed prior to explant and incubation. Slices of embryonic day 20 visual cortex, when incubated under similar conditions as injured sciatic nerves, also showed approximately 25% of the protein incorporated [3H]Arg at the N-terminus, while arginylation was not detectable in adult rat brain slices. Since Lys is not added posttranslationally to the N-terminus, we have attempted to observe lysylation of proteins in intact cells by using cycloheximide (Cx) to block protein synthesis without interfering with protein modification. The posttranslational incorporation of Arg/Lys into proteins was found to be insensitive to up to 2.0 mM Cx in tissue extracts (in vitro).(ABSTRACT TRUNCATED AT 250 WORDS)
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Affiliation(s)
- N S Xu
- Department of Physiology, New Jersey Medical School, UMDNJ, Newark 07103-2757
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Abstract
Fifty five clinically diagnosed cases of neonatal septicaemia of the nursery ward, Medical College Hospital Calcutta were subjected to blood culture on two consecutive days in all cases. Bacterial isolates were found in 34 (61.8%) cases as pure growth and candida species from 9 (16.4%) as pure culture. Remaining 12 samples did not yield any growth. Species distribution of candida showed C. albicans 6, C. parapsilosis 2, and C. guillermondii 1. Asphyxia neonatorum was the common feature in all cases of candidaemia. All neonates with candidal infection were low-birth-weight and premature. C. albicans, the predominant species (66.6%) recovered, was responsible for a localised outbreak of infection in the nursery.
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Affiliation(s)
- A Roy
- Department of Microbiology, Medical College, Calcutta
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Abstract
Purified myelin from rat brainstem was found to have an appreciable level of guanylyl cyclase activity, as seen in the formation of 3',5'-cyclic GMP from [3H]GTP at a rate approximately 45% that of whole brainstem. Freshly isolated myelin from pooled rat brainstems was incubated with GTP in an appropriate mixture. This gave rise to 29.9 +/- 3.6 pmol of 3',5'-cyclic GMP/mg of protein/min measured by HPLC and a similar result (26.7 +/- 2.6 pmol/mg/min) with 125I-3',5'-cyclic GMP radioimmunoassay. The latter method applied to the reaction product from whole brainstem gave a value of 56.6 +/- 3.4 pmol/mg/min. In analyzing brainstem products by HPLC we observed in most trials concurrent formation of a second radiolabeled product that comigrated with 2',3'-cyclic GMP but that, on further examination, proved not to be that product. Its identity remains unknown.
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Affiliation(s)
- G Chakraborty
- Department of Neurosciences, UMDNJ-New Jersey Medical School, Newark 07103
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40
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Chakraborty G, Gaeth GJ, Cunningham M. Understanding consumers' preferences for dental service. J Health Care Mark 1993; 13:48-58. [PMID: 10129815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
Abstract
Previous researchers typically have used attitude and opinion surveys to investigate consumers' perceived importance of dental services attributes. These approaches do not require consumers to trade-off among different attributes, however. The authors use conjoint analysis to analyze consumers' preferences for dental services described by a set of 24 attributes, examining the relative importance as well as the trade-off among these attributes. They also illustrate how dental care providers can use the results from conjoint analysis to tailor their offerings to meet the needs of different segments.
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Abstract
Damaged sciatic nerves of rats respond to injury within minutes by activating reactions that result in the transfer RNA-mediated posttranslational addition of several amino acids to a variety of cytoplasmic proteins. For the most part, the site of addition of individual amino acids and the identity of the target proteins is not known. However, arginine, one of the amino acids added in greatest amounts, has been shown to be covalently linked to the N-terminus of acceptor proteins. In other simpler eukaryotic cells, N-terminal arginylation results in degradation of the arginylated proteins via the ubiquitin proteolytic pathway. Recent experiments have shown that when proteins, obtained from sciatic nerves 2 h after injury, are arginylated in vitro, they form high molecular weight aggregates. Other experiments have shown that these arginylated proteins are immunoreactive to a monoclonal antibody to ubiquitin. These findings suggest that following injury to the sciatic nerve, proteins which are arginylated are candidates for ubiquitin mediated proteolysis. Injury to a nerve incapable of regeneration without experimental intervention, the rat optic nerve, does not result in activation of the arginylation reactions until 6 days following injury. Based on the temporal differences in response to injury of sciatic and optic nerves (2 h vs. 6 days), we propose that the lack of arginylation following injury to the CNS is related to its inability to mount a regenerative response. The association of Arg modification of damaged proteins with the ubiquitin-mediated degradation of those proteins, suggests that regenerative failure in the CNS may be related, in part, to a failure to degrade intracellular proteins at the site of injury.
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Affiliation(s)
- G Chakraborty
- Department of Physiology, UMDNJ New Jersey Medical School, Newark 07103
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42
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Abstract
A high molecular weight (HMW) fraction of the 150,000 g supernatant of rat brain homogenates contains protein-tRNA complexes which are able to incorporate [3H]Arg and [3H]Lys into tRNA. The aminoacylation of tRNA(Arg) was found to be dependent on ATP and inhibited by RNase. Conversely, the aminoacylation of tRNA(Lys) did not require exogenous ATP and was resistant to RNase and ATPase. In HMW fractions of regenerating rat sciatic nerves, the charging of both tRNA(Arg) and tRNA(Lys) was resistant to RNase and ATPase and did not require exogenous ATP. Because sciatic nerves are rich in axoplasm and tRNAs are known to be present in axons, we tested the hypothesis that degradative enzyme-resistant, ATP-tRNA complexes were of axonal origin. In HMW fractions from rat liver (containing no axons), both tRNA(Arg) and tRNA(Lys) were sensitive to RNase and required exogenous ATP for charging. But, in similar fractions of axoplasm obtained from the giant axon of squid, both tRNAs were insensitive to RNase and ATPase and did not require exogenous ATP for charging. These results suggest that tRNAs in axons are present in protected HMW complexes and contain endogenous stores of ATP. The presence of ATP in the HMW complexes was demonstrated by the luciferase-luciferin assay for ATP. The nature of the protection of tRNAs from RNases was examined by dissociating proteins from HMW complexes by boiling, treating with proteinase K, or overhomogenizing the tissue. These procedures failed to render brain tRNA(Lys) susceptible to RNase. But phenol-extracted, ethanol-precipitated brain tRNA(Lys) was sensitive to RNase, suggesting that the protection of tRNA(Lys) may be by a protease- and heat-resistant polypeptide or by a nonproteinaceous mechanism.
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Affiliation(s)
- G Chakraborty
- Department of Physiology, New Jersey Medical School, University of Medicine and Dentistry of New Jersey, Newark 07103-2757
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43
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Abstract
Crush injury to rat sciatic nerves results in a 10-fold increase in the post-translational arginylation of proteins. In other systems, N-terminal arginylation leads to ubiquitination and proteolysis of the arginylated proteins. In the present experiments, proteins obtained from the 150 kg supernatant of crushed sciatic nerves were posttranslationally modified by 3H-arginine. These arginine modified proteins formed aggregates (precipitated at 20 kg) which then partially separated by SDS-PAGE were immunoreactive to a monoclonal antibody to ubiquitin. The results indicate that following injury to sciatic nerves, certain proteins are arginylated and ubiquitinated, probably targeting them for degradation. It is likely that these reactions help to rid cells of proteins damaged by the crush which would otherwise be cytotoxic.
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Affiliation(s)
- D L Jack
- Department of Physiology and Neuroscience, New Jersey Medical School, UMDNJ, Newark 07103-2757
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44
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Dayal VK, Chakraborty G, Sturman JA, Ingoglia NA. The site of amino acid addition to posttranslationally modified proteins of regenerating rat sciatic nerves. Biochim Biophys Acta 1990; 1038:172-7. [PMID: 2331481 DOI: 10.1016/0167-4838(90)90201-p] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The posttranslational modification of proteins by amino acids has been described in a variety of biological systems. These reactions occur at low levels in intact sciatic nerves of rats but are increased 10-fold following nerve injury and during subsequent regeneration of the nerve. While it has been shown in brain and liver that the site of addition of Arg is to the N-terminus, there is no information on the location at which the other amino acids add on to targeted proteins nor the site of addition of Arg in regenerating nerves. In the present study, we have used manual micro-Edman degradation combined with HPLC, and digestion with carboxypeptidase A and B to determine the site of addition of various amino acids to targeted proteins. Of the 3H-labelled amino acids incorporated posttranslationally into proteins of regenerating sciatic nerves (Arg, Lys, Leu, Phe, Val, Ala, Pro and Ser), only [3H]Arg was found to be present at the N-terminus. To determine whether amino acid additions were occurring at the C-terminus, proteins modified by two of the amino acids incorporated in greatest amounts (Lys and Leu) were incubated with specific carboxypeptidases. [3H]Leucine was not liberated following incubation with carboxypeptidase, suggesting that Leu is not added at the C-terminus of modified proteins. Under similar conditions, some [3H]Lys was liberated, but in amounts not significantly different from controls incubated without carboxypeptidase, indicating a non-specific degradation of Lys modified proteins rather than a specific release of Lys from the C-terminus. These experiments show that in regenerating sciatic nerves of rats, Arg is the only amino acid added posttranslationally to the amino terminus of target proteins, and that Leu, and probably Lys, are not conjugated to proteins at the C-terminus.
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Affiliation(s)
- V K Dayal
- Department of Physiology, UMDNJ-New Jersey Medical School, Newark
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45
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Abstract
Recent experiments have shown that Arg, Lys, and Leu can be incorporated posttranslationally into proteins of regenerating sciatic nerves of rats. The present experiments investigate a mixture of 15 radioactive amino acids to determine if additional amino acids can be conjugated posttranslationally to proteins of regenerating nerves. Proteins of regenerating sciatic nerves of rats were able to incorporate Arg, Lys, Leu, Pro, Val, Ala, Phe, and Ser in relatively large amounts and Asp, Glu, Thr, Gly, Ile, His, and Tyr in relatively low or undetectable amounts, in the most advanced portion of the regenerating nerves. Two-dimensional SDS PAGE showed incorporation of the amino acid mixture into distinct radioactive peaks with molecular weights in the 80-90 kD, 53-66 kD, 22-46 kD, and 17 kD ranges with isoelectric points between 5.0 and 7.9. Most of the amino acids were incorporated into proteins in all of the molecular weight ranges. But Ser was incorporated in highest amounts in the 17 kD range, and Val was most abundant in the 22-46 kD range. In some cases results indicated that single proteins were modified by several amino acids. While we do not yet know which amino acids modify specific nerve proteins or the function of the modifications in nerve regeneration, these studies demonstrate the participation of some but not all amino acids in posttranslational modification reactions and the selective modification of specific groups of nerve proteins by these amino acids.
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Affiliation(s)
- G Chakraborty
- Department of Physiology, UMDNJ-New Jersey Medical School, Newark
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46
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Abstract
Post-translational conjugation of arginine (but not other amino acids) to proteins has been reported to occur in a high speed supernatant fraction of rat brain homogenates from which molecules of less than 5000 mol. wt have been removed. In the present study we report that removal of molecules of less than 1000 mol. wt by dialysis, does not result in incorporation of arginine into protein in amounts significantly different than in the undialysed supernatant. The addition of molecules with molecular weights greater than 1000 and less than 5000 to the active fraction, inhibits the incorporation of arginine into proteins in a concentration dependent manner suggesting that the post-translational incorporation of arginine into brain is regulated by a molecule(s) of greater than 1000 and less than 5000 mol. wt. Incorporation of lysine into proteins did not occur following removal of molecules of less than 5000 mol. wt, but did occur in the void volume fraction of a Sephacryl S-200 column (molecular weight cut-off 125,000), suggesting that the incorporation of lysine into proteins is regulated by molecules retained by the S-200 column but greater than 5000 mol. wt. When experiments were repeated using the void volume of a Sephacryl S-300 column (molecular weight exclusion, approximately 200 k), leucine and proline were incorporated in amounts similar to arginine and lysine and serine, alanine, valine, phenylalanine and histidine were incorporated at lower but measurable levels.(ABSTRACT TRUNCATED AT 250 WORDS)
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Affiliation(s)
- G Chakraborty
- Department of Physiology, New Jersey Medical School, UMDNJ, Newark 07103
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47
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Affiliation(s)
- N.A. Ingoglia
- Departments of Physiology and Neuroscience, UMD-New Jersey Medical School, Newark, NJ, 07103-2757 (U.S.A.)
| | - G. Chakraborty
- Departments of Physiology and Neuroscience, UMD-New Jersey Medical School, Newark, NJ, 07103-2757 (U.S.A.)
| | - M. Yu
- Departments of Physiology and Neuroscience, UMD-New Jersey Medical School, Newark, NJ, 07103-2757 (U.S.A.)
| | - D. Luo
- Departments of Physiology and Neuroscience, UMD-New Jersey Medical School, Newark, NJ, 07103-2757 (U.S.A.)
| | - C. Liu
- Departments of Physiology and Neuroscience, UMD-New Jersey Medical School, Newark, NJ, 07103-2757 (U.S.A.)
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48
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Shyne-Athwal S, Chakraborty G, Gage E, Ingoglia NA. Comparison of posttranslational protein modification by amino acid addition after crush injury to sciatic and optic nerves of rats. Exp Neurol 1988; 99:281-95. [PMID: 3338523 DOI: 10.1016/0014-4886(88)90148-3] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Posttranslational protein modifications by the addition of amino acids are reactions which occur in intact sciatic and optic nerves of rats. The nerves differ, however, in that 2 h after crush injury these reactions are activated in sciatic but not in optic nerves. As sciatic nerves will eventually regenerate, whereas optic nerves will not, we have proposed that the activation of these reactions is correlated with the ability of a nerve to regenerate. The current experiments examined the posttranslational addition of amino acids to proteins at times greater than 2 h after nerve crush, during sciatic nerve regeneration and optic nerve degeneration. We also examined the optic nerve for morphologic correlates to changes in protein modification and partially characterized the proteins modified by [3H]Lys in the regenerating sciatic nerve using two-dimensional sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE). In a segment of sciatic nerve taken from a region just proximal to the site of crush, protein modification by covalent addition of [3H]Arg, [3H]Lys and [3H]Leu increased during both posttraumatic (2 h postcrush) and regenerative (6 days and 14 days postcrush) stages. Two-dimensional PAGE of [3H]Lys modified sciatic nerve proteins 6 days after crush injury showed labeling of proteins having molecular masses in the 18,000- to 20,000-, 30,000- to 40,000-, and 80,000- to 100,000-Da ranges, with neutral or basic isoelectric points (pI 7.1 to 8.0). In the retinal portion of the crushed optic nerve, incorporation of the same amino acids was unchanged or depressed to 21 days postcrush, except at 6 days postcrush when the incorporation of all three amino acids into proteins was increased threefold. These increases correlated with the appearance of terminal end bulbs in the portion of nerve analyzed. Histological examination of each nerve 2 h postcrush showed marked edema in the optic but not the sciatic nerve, a condition which may be related to the ability of sciatic and inability of optic nerves to activate protein modification reactions.
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Affiliation(s)
- S Shyne-Athwal
- Department of Physiology, UMDNJ-New Jersey Medical School, Newark 07103-2757
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49
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Abstract
A 150,000-g supernatant from axoplasm of the giant axon of the stellate nerve of the squid and from rat sciatic and goldfish optic nerves was found to be able to incorporate covalently [3H]putrescine and [3H]spermidine into an exogenous protein (N,N'-dimethylcasein). Incorporation of radioactivity was inhibited by CuSO4, a specific inhibitor of transglutaminases, the enzymes mediating these reactions in other tissues. Analysis of pH and temperature range and enzyme kinetics displayed characteristics predicted for transglutaminase-mediated reactions. Transglutaminase activity increased during regeneration of both vertebrate nerves, but greater activity was found in segments of nerve containing no intact axons than in either intact segments or in segments containing regenerating axons. Polyacrylamide gel electrophoresis of endogenous modified proteins (in the absence of N,N'-dimethylcasein) showed labeling of 18-, 46- and 200-kilodalton proteins by both [3H]putrescine and [3H]spermidine. Analysis of the protein-bound radioactivity from intact and regenerating rat sciatic nerves demonstrated it to be predominantly in the form of the parent radioactive polyamine. These experiments demonstrate the covalent modification of proteins by polyamines at low levels in squid axoplasm and at relatively higher levels in rat sciatic and goldfish optic nerves. In the latter two cases, the activity of these modification reactions may be due in part to the modification of axonal proteins, but the majority of the activity occurs in nonneuronal cells of the nerve.
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50
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Chakraborty G, Leach T, Zanakis MF, Ingoglia NA. Posttranslational protein modification by amino acid addition in regenerating optic nerves of goldfish. J Neurochem 1986; 46:726-32. [PMID: 2419496 DOI: 10.1111/j.1471-4159.1986.tb13032.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Previous experiments have demonstrated that 4S RNA, (tRNA), is transported axonally during the reconnection and maturation of regenerating optic nerves of goldfish. The present experiments were performed to determine if tRNA is transported axonally during elongation of these regenerating nerves and whether, as has been demonstrated in other systems, it participates in posttranslational protein modification (PTPM). [3H]Uridine was injected into both eyes of fish with intact optic nerves and 0, 2, 4, or 8 days after bilateral optic nerve cut. Fish were killed 2 days after injection, and [3H]RNA was isolated from retinae and nerves by phenol extraction and ethanol precipitation. [3H]RNA was fractionated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Although the percentage of [3H]4S RNA remained constant in all retinal and control nerve samples, regenerating nerves showed a twofold increase by 6 days after injury, suggesting that [3H]4S RNA is transported axonally in regenerating nerves as early as 6 days after injury. In other experiments, the 150,000-g supernatant of optic nerves was analyzed for incorporation of 3H-amino acids into proteins. No incorporation of 3H-amino acid was found in the soluble supernatant, but when the supernatant was passed through a Sephacryl S-200 column (removing molecules less than 20,000 daltons), [3H]Arg, [3H]Lys, and [3H]Leu were incorporated into proteins. This posttranslational addition of amino acids was greater (1.4-5 times for Lys and 2-13 times for Leu) in regenerating optic nerves than nonregenerating nerves, and the growing tips of regenerating nerves incorporated 5-15 times more [3H]Lys and [3H]Leu into proteins than did the shafts.(ABSTRACT TRUNCATED AT 250 WORDS)
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