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Galal AM, Haider Q, Hassan A, Arshad M, Alam MM, Al-Essa LA, Habenom H. A besyian regularisation neural network approach for hepatitis B virus spread prediction and immune system therapy model. Sci Rep 2024; 14:23672. [PMID: 39390093 PMCID: PMC11467264 DOI: 10.1038/s41598-024-75336-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Accepted: 10/04/2024] [Indexed: 10/12/2024] Open
Abstract
The primary aim of the article is to analyze the response of the human immune system when it encounters the hepatitis B virus. This is done using a mathematical system of differential equations. The differential equation system has six components, likely representing various aspects of the immune response or virus dynamics. A Bayesian regularization neural network has been presented in the process of training. These networks are employed to find solutions for different categories or scenarios related to hepatitis B infection. The Adams method is used to generate reference data sets. The back-propagated artificial neural network, based on Bayesian regularization, is trained and validated using the generated data. The data is divided into three sets: 90% for training and 5% each for testing and validation. The correctness and effectiveness of the proposed neural network model have been assessed using various evaluation metrics. The metrics have been used in this study are Mean Square Error (MSE), histogram errors, and regression plots. These measures provide support to the neural network to approximate the immune response to the hepatitis B virus.
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Affiliation(s)
- Ahmed M Galal
- Department of Mechanical Engineering, College of Engineering in Wadi Alddawasir, Prince Sattam bin Abdulaziz University, Wadi Alddawasir, Saudi Arabia
- Production Engineering and Mechanical Design Department, Faculty of Engineering, Mansoura University, P.O 35516, Mansoura, Egypt
| | - Qusain Haider
- Department of Mathematics, University of Gujrat, Gujrat, 50700, Pakistan
| | - Ali Hassan
- Department of Mechanics and Aerospace Engineering, Southern University of Science and Technology, Shenzhen, Guangdong, China
| | - Mubashar Arshad
- Department of Mathematics, Abbottabad University of Science & Technology, Abbottabad, 22500, Pakistan
| | - Mohammad Mahtab Alam
- Department of Basic Medical Sciences, College of Applied Medical Science, King Khalid University, Abha, 61421, Saudi Arabia
| | - Laila A Al-Essa
- Department of Mathematical Sciences, College of Science, Princess Nourah bint Abdulrahman University, P.O.Box 84428, Riyadh, 11671, Saudi Arabia
| | - Haile Habenom
- Department of Mathematics, Wollega University, Nekemte, Ethiopia.
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Arteaga-Troncoso G, Luna-Alvarez M, Hernández-Andrade L, Jiménez-Estrada JM, Sánchez-Cordero V, Botello F, Montes de Oca-Jiménez R, López-Hurtado M, Guerra-Infante FM. Modelling the Unidentified Abortion Burden from Four Infectious Pathogenic Microorganisms ( Leptospira interrogans, Brucella abortus, Brucella ovis, and Chlamydia abortus) in Ewes Based on Artificial Neural Networks Approach: The Epidemiological Basis for a Control Policy. Animals (Basel) 2023; 13:2955. [PMID: 37760355 PMCID: PMC10525082 DOI: 10.3390/ani13182955] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Revised: 08/23/2023] [Accepted: 09/07/2023] [Indexed: 09/29/2023] Open
Abstract
Unidentified abortion, of which leptospirosis, brucellosis, and ovine enzootic abortion are important factors, is the main cause of disease spread between animals and humans in all agricultural systems in most developing countries. Although there are well-defined risk factors for these diseases, these characteristics do not represent the prevalence of the disease in different regions. This study predicts the unidentified abortion burden from multi-microorganisms in ewes based on an artificial neural networks approach and the GLM. METHODS A two-stage cluster survey design was conducted to estimate the seroprevalence of abortifacient microorganisms and to identify putative factors of infectious abortion. RESULTS The overall seroprevalence of Brucella was 70.7%, while Leptospira spp. was 55.2%, C. abortus was 21.9%, and B. ovis was 7.4%. Serological detection with four abortion-causing microorganisms was determined only in 0.87% of sheep sampled. The best GLM is integrated via serological detection of serovar Hardjo and Brucella ovis in animals of the slopes with elevation between 2600 and 2800 meters above sea level from the municipality of Xalatlaco. Other covariates included in the GLM, such as the sheep pen built with materials of metal grids and untreated wood, dirt and concrete floors, bed of straw, and the well water supply were also remained independently associated with infectious abortion. Approximately 80% of those respondents did not wear gloves or masks to prevent the transmission of the abortifacient zoonotic microorganisms. CONCLUSIONS Sensitizing stakeholders on good agricultural practices could improve public health surveillance. Further studies on the effect of animal-human transmission in such a setting is worthwhile to further support the One Health initiative.
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Affiliation(s)
- Gabriel Arteaga-Troncoso
- Department of Cellular Biology and Development, Instituto Nacional de Perinatología, Ciudad de Mexico 11000, Mexico;
- Military School of Health Officers, University of the Mexican Army and Air Force, SEDENA, Ciudad de Mexico 11650, Mexico
| | - Miguel Luna-Alvarez
- Laboratory of Leptospirosis, National Centre for Disciplinary Research in Animal Health, and Food Safety (CENID-SAI, INIFAP), Ciudad de Mexico 05110, Mexico;
| | - Laura Hernández-Andrade
- Laboratory of Bacteriology, National Centre for Disciplinary Research in Animal Health, and Food Safety (CENID-SAI, INIFAP), Ciudad de Mexico 05110, Mexico;
| | | | - Víctor Sánchez-Cordero
- Department of Zoology and National Pavilion of Biodiversity, Institute of Biology, National Autonomous University of Mexico, Ciudad de Mexico 04510, Mexico; (V.S.-C.); (F.B.)
| | - Francisco Botello
- Department of Zoology and National Pavilion of Biodiversity, Institute of Biology, National Autonomous University of Mexico, Ciudad de Mexico 04510, Mexico; (V.S.-C.); (F.B.)
| | | | - Marcela López-Hurtado
- Department of Infectology and Immunology, Instituto Nacional de Perinatología, Ciudad de Mexico 11000, Mexico;
| | - Fernando M. Guerra-Infante
- Department of Infectology and Immunology, Instituto Nacional de Perinatología, Ciudad de Mexico 11000, Mexico;
- Department of Veterinary Microbiology, Escuela Superior de Ciencias Biológicas, IPN, Ciudad de Mexico 11340, Mexico
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Parida VK, Saidulu D, Bhatnagar A, Gupta AK, Afzal MS. A critical assessment of SARS-CoV-2 in aqueous environment: Existence, detection, survival, wastewater-based surveillance, inactivation methods, and effective management of COVID-19. CHEMOSPHERE 2023; 327:138503. [PMID: 36965534 PMCID: PMC10035368 DOI: 10.1016/j.chemosphere.2023.138503] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Revised: 03/08/2023] [Accepted: 03/22/2023] [Indexed: 06/01/2023]
Abstract
In early January 2020, the causal agent of unspecified pneumonia cases detected in China and elsewhere was identified as a novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and was the major cause of the COVID-19 outbreak. Later, the World Health Organization (WHO) proclaimed the COVID-19 pandemic a worldwide public health emergency on January 30, 2020. Since then, many studies have been published on this topic. In the present study, bibliometric analysis has been performed to analyze the research hotspots of the coronavirus. Coronavirus transmission, detection methods, potential risks of infection, and effective management practices have been discussed in the present review. Identification and quantification of SARS-CoV-2 viral loads in various water matrices have been reviewed. It was observed that the viral shedding through urine and feces of COVID-19-infected patients might be a primary mode of SARS-CoV-2 transmission in water and wastewater. In this context, the present review highlights wastewater-based epidemiology (WBE)/sewage surveillance, which can be utilized as an effective tool for tracking the transmission of COVID-19. This review also emphasizes the role of different disinfection techniques, such as chlorination, ultraviolet irradiation, and ozonation, for the inactivation of coronavirus. In addition, the application of computational modeling methods has been discussed for the effective management of COVID-19.
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Affiliation(s)
- Vishal Kumar Parida
- School of Environmental Science and Engineering, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India
| | - Duduku Saidulu
- Department of Civil Engineering, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India
| | - Amit Bhatnagar
- Department of Separation Science, LUT School of Engineering Science, LUT University, Sammonkatu 12, Mikkeli FI-50130, Finland.
| | - Ashok Kumar Gupta
- Department of Civil Engineering, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.
| | - Mohammad Saud Afzal
- Department of Civil Engineering, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India
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Meskher H, Belhaouari SB, Thakur AK, Sathyamurthy R, Singh P, Khelfaoui I, Saidur R. A review about COVID-19 in the MENA region: environmental concerns and machine learning applications. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:82709-82728. [PMID: 36223015 PMCID: PMC9554385 DOI: 10.1007/s11356-022-23392-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 09/26/2022] [Indexed: 06/16/2023]
Abstract
Coronavirus disease 2019 (COVID-19) has delayed global economic growth, which has affected the economic life globally. On the one hand, numerous elements in the environment impact the transmission of this new coronavirus. Every country in the Middle East and North Africa (MENA) area has a different population density, air quality and contaminants, and water- and land-related conditions, all of which influence coronavirus transmission. The World Health Organization (WHO) has advocated fast evaluations to guide policymakers with timely evidence to respond to the situation. This review makes four unique contributions. One, many data about the transmission of the new coronavirus in various sorts of settings to provide clear answers to the current dispute over the virus's transmission were reviewed. Two, highlight the most significant application of machine learning to forecast and diagnose severe acute respiratory syndrome coronavirus (SARS-CoV-2). Three, our insights provide timely and accurate information along with compelling suggestions and methodical directions for investigators. Four, the present study provides decision-makers and community leaders with information on the effectiveness of environmental controls for COVID-19 dissemination.
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Affiliation(s)
- Hicham Meskher
- Division of Process Engineering, College of Applied Science, Kasdi-Merbah University, 30000, Ouargla, Algeria
| | - Samir Brahim Belhaouari
- Division of Information and Computing Technology, College of Science and Engineering, Hamad Bin Khalifa University, Education City, Qatar Foundation, P.O. Box 34110, Doha, Qatar
| | - Amrit Kumar Thakur
- Department of Mechanical Engineering, KPR Institute of Engineering and Technology, Arasur, Coimbatore, Tamil Nadu, 641407, India
| | - Ravishankar Sathyamurthy
- Department of Mechanical Engineering, King Fahd University of Petroleum and Minerals, Dammam, Saudi Arabia.
| | - Punit Singh
- Institute of Engineering and Technology, Department of Mechanical Engineering, GLA University Mathura, Mathura, Uttar Pradesh, 281406, India
| | - Issam Khelfaoui
- School of Insurance and Economics, University of International Business and Economics, Beijing, China
| | - Rahman Saidur
- Research Centre for Nano-Materials and Energy Technology (RCNMET), School of Engineering and Technology, Sunway University, No. 5, Jalan Universiti, Bandar Sunway, 47500, Petaling Jaya, Malaysia
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Jiang G, Wu J, Weidhaas J, Li X, Chen Y, Mueller J, Li J, Kumar M, Zhou X, Arora S, Haramoto E, Sherchan S, Orive G, Lertxundi U, Honda R, Kitajima M, Jackson G. Artificial neural network-based estimation of COVID-19 case numbers and effective reproduction rate using wastewater-based epidemiology. WATER RESEARCH 2022; 218:118451. [PMID: 35447417 PMCID: PMC9006161 DOI: 10.1016/j.watres.2022.118451] [Citation(s) in RCA: 51] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Revised: 04/02/2022] [Accepted: 04/10/2022] [Indexed: 05/06/2023]
Abstract
As a cost-effective and objective population-wide surveillance tool, wastewater-based epidemiology (WBE) has been widely implemented worldwide to monitor the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA concentration in wastewater. However, viral concentrations or loads in wastewater often correlate poorly with clinical case numbers. To date, there is no reliable method to back-estimate the coronavirus disease 2019 (COVID-19) case numbers from SARS-CoV-2 concentrations in wastewater. This greatly limits WBE in achieving its full potential in monitoring the unfolding pandemic. The exponentially growing SARS-CoV-2 WBE dataset, on the other hand, offers an opportunity to develop data-driven models for the estimation of COVID-19 case numbers (both incidence and prevalence) and transmission dynamics (effective reproduction rate). This study developed artificial neural network (ANN) models by innovatively expanding a conventional WBE dataset to include catchment, weather, clinical testing coverage and vaccination rate. The ANN models were trained and evaluated with a comprehensive state-wide wastewater monitoring dataset from Utah, USA during May 2020 to December 2021. In diverse sewer catchments, ANN models were found to accurately estimate the COVID-19 prevalence and incidence rates, with excellent precision for prevalence rates. Also, an ANN model was developed to estimate the effective reproduction number from both wastewater data and other pertinent factors affecting viral transmission and pandemic dynamics. The established ANN model was successfully validated for its transferability to other states or countries using the WBE dataset from Wisconsin, USA.
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Affiliation(s)
- Guangming Jiang
- School of Civil, Mining and Environmental Engineering, University of Wollongong, Australia; Illawarra Health and Medical Research Institute (IHMRI), University of Wollongong, Wollongong, Australia.
| | - Jiangping Wu
- School of Civil, Mining and Environmental Engineering, University of Wollongong, Australia
| | - Jennifer Weidhaas
- University of Utah, Civil and Environmental Engineering, 110 Central Campus Drive, Suite 2000, Salt Lake City, UT, USA
| | - Xuan Li
- School of Civil, Mining and Environmental Engineering, University of Wollongong, Australia
| | - Yan Chen
- School of Civil, Mining and Environmental Engineering, University of Wollongong, Australia
| | - Jochen Mueller
- Queensland Alliance for Environmental Health Sciences, The University of Queensland, Australia
| | - Jiaying Li
- Queensland Alliance for Environmental Health Sciences, The University of Queensland, Australia
| | - Manish Kumar
- Sustainability Cluster, School of Engineering, University of Petroleum & Energy Studies, Dehradun, Uttarakhand 248007, India
| | - Xu Zhou
- Shenzhen Engineering Laboratory of Microalgal Bioenergy, Harbin Institute of Technology (Shenzhen), Shenzhen 518055, China; State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Sudipti Arora
- Dr. B. Lal Institute of Biotechnology, Jaipur, India
| | - Eiji Haramoto
- Interdisciplinary Center for River Basin Environment, University of Yamanashi, Kofu, Japan
| | - Samendra Sherchan
- Department of Environmental Health Sciences, Tulane University, New Orleans, LA, USA
| | - Gorka Orive
- NanoBioCel Group, Laboratory of Pharmaceutics, School of Pharmacy, University of the Basque Country UPV/EHU, Paseo de la Universidad 7, Vitoria-Gasteiz 01006, Spain; Biomedical Research Networking Centre in Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), Vitoria-Gasteiz, Spain
| | - Unax Lertxundi
- NanoBioCel Group, Laboratory of Pharmaceutics, School of Pharmacy, University of the Basque Country UPV/EHU, Paseo de la Universidad 7, Vitoria-Gasteiz 01006, Spain; Biomedical Research Networking Centre in Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), Vitoria-Gasteiz, Spain
| | - Ryo Honda
- Faculty of Geosciences and Civil Engineering, Kanazawa University, Kanazawa 920-1192, Japan
| | - Masaaki Kitajima
- Division of Environmental Engineering, Hokkaido University, Hokkaido 060-8628, Japan
| | - Greg Jackson
- Queensland Alliance for Environmental Health Sciences (QAEHS), The University of Queensland, 4102, Brisbane, Australia
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Ho TT, Tran KD, Huang Y. FedSGDCOVID: Federated SGD COVID-19 Detection under Local Differential Privacy Using Chest X-ray Images and Symptom Information. SENSORS (BASEL, SWITZERLAND) 2022; 22:3728. [PMID: 35632136 PMCID: PMC9147951 DOI: 10.3390/s22103728] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Revised: 05/09/2022] [Accepted: 05/10/2022] [Indexed: 12/15/2022]
Abstract
Coronavirus (COVID-19) has created an unprecedented global crisis because of its detrimental effect on the global economy and health. COVID-19 cases have been rapidly increasing, with no sign of stopping. As a result, test kits and accurate detection models are in short supply. Early identification of COVID-19 patients will help decrease the infection rate. Thus, developing an automatic algorithm that enables the early detection of COVID-19 is essential. Moreover, patient data are sensitive, and they must be protected to prevent malicious attackers from revealing information through model updates and reconstruction. In this study, we presented a higher privacy-preserving federated learning system for COVID-19 detection without sharing data among data owners. First, we constructed a federated learning system using chest X-ray images and symptom information. The purpose is to develop a decentralized model across multiple hospitals without sharing data. We found that adding the spatial pyramid pooling to a 2D convolutional neural network improves the accuracy of chest X-ray images. Second, we explored that the accuracy of federated learning for COVID-19 identification reduces significantly for non-independent and identically distributed (Non-IID) data. We then proposed a strategy to improve the model's accuracy on Non-IID data by increasing the total number of clients, parallelism (client-fraction), and computation per client. Finally, for our federated learning model, we applied a differential privacy stochastic gradient descent (DP-SGD) to improve the privacy of patient data. We also proposed a strategy to maintain the robustness of federated learning to ensure the security and accuracy of the model.
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Affiliation(s)
- Trang-Thi Ho
- Research Center for Information Technology Innovation, Academia Sinica, Taipei 10607, Taiwan; (K.-D.T.); (Y.H.)
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Abstract
The COVID-19 pandemic spread rapidly around the world and is currently one of the most leading causes of death and heath disaster in the world. Turkey, like most of the countries, has been negatively affected by COVID-19. The aim of this study is to design a predictive model based on artificial neural network (ANN) model to predict the future number of daily cases and deaths caused by COVID-19 in a generalized way to fit different countries’ spreads. In this study, we used a dataset between 11 March 2020 and 23 January 2021 for different countries. This study provides an ANN model to assist the government to take preventive action for hospitals and medical facilities. The results show that there is an 86% overall accuracy in predicting the mortality rate and 87% in predicting the number of cases.
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