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Li Y, Yang Z, Wang W, Wang X, Zhang C, Dong J, Bai M, Hui T. Research Progress of Rapid Non-Destructive Detection Technology in the Field of Apple Mold Heart Disease. Molecules 2023; 28:7966. [PMID: 38138456 PMCID: PMC10745863 DOI: 10.3390/molecules28247966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 11/24/2023] [Accepted: 11/29/2023] [Indexed: 12/24/2023] Open
Abstract
Apples are rich in vitamins and dietary fiber and are one of the essential fruits in people's daily diet. China has always been a big apple consumer, and with the improvement of people's life quality, nutrition, and health requirements, the demand for high-quality apples has increased year by year. Apple mold heart disease is one of the main diseases affecting apple quality. However, this disease cannot be easily detected from the surface, so it is difficult to detect mold heart disease. Therefore, this paper focuses on the analysis of seven non-destructive detection technologies, including near infrared spectroscopy technology, hyperspectral technology, Raman spectroscopy technology, electronic nose technology, acoustic technology, electrical technology, and magnetic technology, summarizes their application status in the detection of apple mold heart disease, and then analyzes their advantages and disadvantages. Combined with the current rapid development of artificial intelligence (AI) technology, this paper proposes the future development trends of using non-destructive technologies to detect apple mold heart disease. It is expected to provide basic theory and application references for the intelligent detection of apple mold heart disease.
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Affiliation(s)
- Yanlei Li
- Mechanical and Electrical Engineering College, Beijing Polytechnic University, Beijing 100042, China; (Z.Y.); (X.W.); (C.Z.); (J.D.); (M.B.)
| | - Zihao Yang
- Mechanical and Electrical Engineering College, Beijing Polytechnic University, Beijing 100042, China; (Z.Y.); (X.W.); (C.Z.); (J.D.); (M.B.)
| | - Wenxiu Wang
- Food Science and Technology College, Hebei Agricultural University, Baoding 071001, China;
| | - Xiangwu Wang
- Mechanical and Electrical Engineering College, Beijing Polytechnic University, Beijing 100042, China; (Z.Y.); (X.W.); (C.Z.); (J.D.); (M.B.)
| | - Chunzhi Zhang
- Mechanical and Electrical Engineering College, Beijing Polytechnic University, Beijing 100042, China; (Z.Y.); (X.W.); (C.Z.); (J.D.); (M.B.)
| | - Jun Dong
- Mechanical and Electrical Engineering College, Beijing Polytechnic University, Beijing 100042, China; (Z.Y.); (X.W.); (C.Z.); (J.D.); (M.B.)
| | - Mengyu Bai
- Mechanical and Electrical Engineering College, Beijing Polytechnic University, Beijing 100042, China; (Z.Y.); (X.W.); (C.Z.); (J.D.); (M.B.)
| | - Teng Hui
- Food Science College, Sichuan Agricultural University, Ya’an 625014, China;
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Ji D, Liu W, Jiang L, Chen T. Cuticles and postharvest life of tomato fruit: A rigid cover for aerial epidermis or a multifaceted guard of freshness? Food Chem 2023; 411:135484. [PMID: 36682164 DOI: 10.1016/j.foodchem.2023.135484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Revised: 01/04/2023] [Accepted: 01/11/2023] [Indexed: 01/20/2023]
Abstract
Fruit cuticle is a specialized cell wall hydrophobic architecture covering the aerial surfaces of fruit, which forms the interface between the fruit and its environment. As a specialized seed-bearing organ, fruit utilize cuticles as physical barriers, water permeation regulator and resistance to pathogens, thus appealing extensive research interests for its potential values in developing postharvest freshness-keeping strategies. Here, we provide an overview for the composition and functions of fruit cuticles, mainly focusing on its functions in mechanical support, water permeability barrier and protection over pathogens, further introduce key mechanisms implicated in fruit cuticle biosynthesis. Moreover, currently available state-of-art techniques for examining compositional diversity and architecture of fruit are also compared.
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Affiliation(s)
- Dongchao Ji
- School of Life Sciences and Medicine, Shandong University of Technology, Xincun West Road 266, Zhangdian District, Zibo, Shandong 255049, China; Key Laboratory of Plant Resources, Institute of Botany, Innovative Academy of Seed Design, Chinese Academy of Sciences, Nanxincun 20, Xiangshan, Haidian District, Beijing 100093, China; University of Chinese Academy of Sciences, Yuquan Road 19(A), Shijingshan District, Beijing 100049, China
| | - Wei Liu
- Key Laboratory of Plant Resources, Institute of Botany, Innovative Academy of Seed Design, Chinese Academy of Sciences, Nanxincun 20, Xiangshan, Haidian District, Beijing 100093, China; University of Chinese Academy of Sciences, Yuquan Road 19(A), Shijingshan District, Beijing 100049, China
| | - Libo Jiang
- School of Life Sciences and Medicine, Shandong University of Technology, Xincun West Road 266, Zhangdian District, Zibo, Shandong 255049, China
| | - Tong Chen
- Key Laboratory of Plant Resources, Institute of Botany, Innovative Academy of Seed Design, Chinese Academy of Sciences, Nanxincun 20, Xiangshan, Haidian District, Beijing 100093, China; University of Chinese Academy of Sciences, Yuquan Road 19(A), Shijingshan District, Beijing 100049, China; Key Laboratory of Post-Harvest Handling of Fruits, Ministry of Agriculture, Nanxincun 20, Xiangshan, Haidian District, Beijing 100093, China.
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3
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Azmi MHIM, Hashim FH, Huddin AB, Sajab MS. Correlation Study between the Organic Compounds and Ripening Stages of Oil Palm Fruitlets Based on the Raman Spectra. SENSORS (BASEL, SWITZERLAND) 2022; 22:7091. [PMID: 36146439 PMCID: PMC9506033 DOI: 10.3390/s22187091] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 09/08/2022] [Accepted: 09/13/2022] [Indexed: 06/16/2023]
Abstract
The degree of maturity of oil palm fresh fruit bunches (FFB) at the time of harvest heavily affects oil production, which is expressed in the oil extraction rate (OER). Oil palm harvests must be harvested at their optimum maturity to maximize oil yield if a rapid, non-intrusive, and accurate method is available to determine their level of maturity. This study demonstrates the potential of implementing Raman spectroscopy for determining the maturity of oil palm fruitlets. A ripeness classification algorithm has been developed utilizing machine learning by classifying the components of organic compounds such as β-carotene, amino acid, etc. as parameters to distinguish the ripeness of fruits. In this study, 47 oil palm fruitlets spectra from three different ripeness levels-under ripe, ripe, and over ripe-were examined. To classify the oil palm fruitlets into three maturity categories, the extracted features were put to the test using 31 machine learning models. It was discovered that the Medium, Weighted KNN, and Trilayered Neural Network classifier has a maximum overall accuracy of 90.9% by using four significant features extracted from the peaks as the predictors. To conclude, the Raman spectroscopy method may offer a precise and efficient means to evaluate the maturity level of oil palm fruitlets.
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Affiliation(s)
- Muhammad Haziq Imran Md Azmi
- Department of Electrical, Electronic and Systems Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, Bangi 43600, Selangor, Malaysia
| | - Fazida Hanim Hashim
- Department of Electrical, Electronic and Systems Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, Bangi 43600, Selangor, Malaysia
- Research Centre for Sustainable Process Technology (CESPRO), Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, Bangi 43600, Selangor, Malaysia
| | - Aqilah Baseri Huddin
- Department of Electrical, Electronic and Systems Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, Bangi 43600, Selangor, Malaysia
| | - Mohd Shaiful Sajab
- Research Centre for Sustainable Process Technology (CESPRO), Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, Bangi 43600, Selangor, Malaysia
- Department of Chemical and Process Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, Bangi 43600, Selangor, Malaysia
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4
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Tzuan GTH, Hashim FH, Raj T, Baseri Huddin A, Sajab MS. Oil Palm Fruits Ripeness Classification Based on the Characteristics of Protein, Lipid, Carotene, and Guanine/Cytosine from the Raman Spectra. PLANTS (BASEL, SWITZERLAND) 2022; 11:1936. [PMID: 35893639 PMCID: PMC9331806 DOI: 10.3390/plants11151936] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Revised: 07/18/2022] [Accepted: 07/21/2022] [Indexed: 06/15/2023]
Abstract
The capacity of palm oil production is directly affected by the ripeness of the fresh fruit bunches (FFB) upon harvesting. Conventional harvesting standards rely on rigid harvesting scheduling as well as the number of fruitlets that have loosened from the bunch. Harvesting is usually done every 10 to 14 days, and an FFB is deemed ready to be harvested if there are around 5 to 10 empty sockets on the fruit bunch. Technology aided by imaging techniques relies heavily on the color of the fruit bunch, which is highly dependent on the surrounding light intensities. In this study, Raman spectroscopy is used for ripeness classification of oil palm fruits, based on the molecular assignments extracted from the Raman bands between 1240 cm-1 and 1360 cm-1. The Raman spectra of 52 oil palm fruit samples which contain the fingerprints of different organic compounds were collected. Signal processing was applied to perform baseline correction and to reduce background noises. Characteristic data of the organic compounds were extracted through deconvolution and curve fitting processes. Subsequently, a correlation study between organic compounds was developed and eight hidden Raman peaks including protein, beta carotene, carotene, lipid, guanine/cytosine, chlorophyll-a, and tryptophan were successfully located. Through ANOVA statistical analysis, a total of six peak intensities from proteins through Amide III (β-sheet), beta-carotene, carotene, lipid, guanine/cytosine, and carotene and one peak location from lipid were found to be significant. An automated oil palm fruit ripeness classification system deployed with artificial neural network (ANN) using the seven signification features showed an overall performance of 97.9% accuracy. An efficient and accurate ripeness classification model which uses seven significant Raman peak features from the correlation analysis between organic compounds was successfully developed.
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Affiliation(s)
- Gabriel Tan Hong Tzuan
- Department of Electrical, Electronic and Systems Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia; (G.T.H.T.); (T.R.); (A.B.H.)
| | - Fazida Hanim Hashim
- Department of Electrical, Electronic and Systems Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia; (G.T.H.T.); (T.R.); (A.B.H.)
- Research Centre for Sustainable Process Technology (CESPRO), Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia;
| | - Thinal Raj
- Department of Electrical, Electronic and Systems Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia; (G.T.H.T.); (T.R.); (A.B.H.)
| | - Aqilah Baseri Huddin
- Department of Electrical, Electronic and Systems Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia; (G.T.H.T.); (T.R.); (A.B.H.)
| | - Mohd Shaiful Sajab
- Research Centre for Sustainable Process Technology (CESPRO), Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia;
- Department of Chemical and Process Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia
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Liu XY, Guo S, Bocklitz T, Rösch P, Popp J, Yu HQ. Nondestructive 3D imaging and quantification of hydrated biofilm matrix by confocal Raman microscopy coupled with non-negative matrix factorization. WATER RESEARCH 2022; 210:117973. [PMID: 34959065 DOI: 10.1016/j.watres.2021.117973] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Revised: 11/30/2021] [Accepted: 12/14/2021] [Indexed: 06/14/2023]
Abstract
Biofilms are ubiquitous in natural and engineered environments and of great importance in drinking water distribution and biological wastewater treatment systems. Simultaneously acquiring the chemical and structural information of the hydrated biofilm matrix is essential for the cognition and regulation of biofilms in the environmental field. However, the complexity of samples and the limited approaches prevent a holistic understanding of the biofilm matrix. In this work, an approach based on the confocal Raman mapping technique integrated with non-negative matrix factorization (NMF) analysis was developed to probe the hydrated biofilm matrix in situ. The flexibility of the NMF analysis was utilized to subtract the undesired water background signal and resolve the meaningful biological components from Raman spectra of the hydrated biofilms. Diverse chemical components such as proteins, bacterial cells, glycolipids and polyhydroxyalkanoates (PHA) were unraveled within the distinct Pseudomonas spp. biofilm matrices, and the corresponding 3-dimensional spatial organization was visualized and quantified. Of these components, glycolipids and PHA were unique to the P. aeruginosa and P. putida biofilm matrix, respectively. Furthermore, their high abundances in the lower region of the biofilm matrix were found to be related to the specific physiological functions and surrounding microenvironments. Overall, the results demonstrate that our NMF Raman mapping method could serve as a powerful tool complementary to the conventional approaches for identifying and visualizing the chemical components in the biofilm matrix. This work may facilitate the online characterization of the biofilm matrix widely present in the environment and advance the fundamental understanding of biofilm.
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Affiliation(s)
- Xiao-Yang Liu
- CAS Key Laboratory of Urban Pollutant Conversion, Department of Environmental Science and Engineering, University of Science and Technology of China, Hefei 230026, China; School of Energy & Environmental Engineering, Hebei University of Technology, Tianjin 300130, China; Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, Jena D-07743, Germany; InfectoGnostics Research Campus Jena, Philosophenweg 7, Jena D-07743, Germany
| | - Shuxia Guo
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, Jena D-07743, Germany; Leibniz Institute of Photonic Technology Jena - Member of the Research Alliance "Leibniz Health Technologies", Albert-Einstein-Strasse 9, Jena D-07745, Germany
| | - Thomas Bocklitz
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, Jena D-07743, Germany; Leibniz Institute of Photonic Technology Jena - Member of the Research Alliance "Leibniz Health Technologies", Albert-Einstein-Strasse 9, Jena D-07745, Germany
| | - Petra Rösch
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, Jena D-07743, Germany; InfectoGnostics Research Campus Jena, Philosophenweg 7, Jena D-07743, Germany
| | - Jürgen Popp
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, Jena D-07743, Germany; InfectoGnostics Research Campus Jena, Philosophenweg 7, Jena D-07743, Germany; Center for Sepsis Control and Care (CSCC), Jena University Hospital, Am Klinikum 1, Jena D-07743, Germany; Leibniz Institute of Photonic Technology Jena - Member of the Research Alliance "Leibniz Health Technologies", Albert-Einstein-Strasse 9, Jena D-07745, Germany.
| | - Han-Qing Yu
- CAS Key Laboratory of Urban Pollutant Conversion, Department of Environmental Science and Engineering, University of Science and Technology of China, Hefei 230026, China.
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6
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Liu Y, Lunter DJ. Confocal Raman spectroscopy at different laser wavelengths in analyzing stratum corneum and skin penetration properties of mixed PEGylated emulsifier systems. Int J Pharm 2022; 616:121561. [PMID: 35151816 DOI: 10.1016/j.ijpharm.2022.121561] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Revised: 01/26/2022] [Accepted: 02/04/2022] [Indexed: 10/19/2022]
Abstract
Emulsifier mixtures are widely used in cosmetics and pharmaceutics and thus, brought extensive studies for their performances on skin applications. PEG-20cetyl ether (C20) is recently proposed to induce skin irritation and is of interest to study its skin interactions when mixed with other emulsifiers. PEG-2oleyl ether (O2) and PEG-20stearyl ether (S20) are selected and in specific, 50 mM of C20, O2, S20 as well as Mix1 (50 mM C20 mixed with 50 mM O2) and Mix2 (50 mM C20 mixed with 50 mM S20) solutions were applied on skin samples. Confocal Raman spectroscopy (CRS) analyses of stratum corneum (SC) thickness and SC lipid content were performed after 4 h skin treatments. In parallel, skin penetration properties were also evaluated via CRS by applying procaine solutions with/without emulsifiers on skin samples for 24 h. In terms of the CRS measurements, two excitation wavelengths of 532 nm and 785 nm are both utilized in this study and we secondly aimed to compare their results and suitability in SC and skin analyses. Based on the experimental observations, comparable results are obtained by using both excitation wavelengths of 532 nm and 785 nm demonstrating their suitability in analyzing SC and skin samples. Thereinto, 785 nm laser wavelength shows the advantage of deeper skin penetration and allows the measurements of fluorescent skin samples; 532 nm laser wavelength enables simple measurement performance without substrate and coverslip interference. With regards to the results of emulsifier mixtures, the addition of S20 and O2 reduced the skin interactions and penetration enhancing ability of C20, giving us the hint to build milder systems with emulsifier mixtures. Besides, the CRS results of stronger skin interruption were also correlated with the higher critical micelle concentration (CMC) values of emulsifiers and their mixtures, which may provide evidence in explaining the interactions between emulsifiers and skin.
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Affiliation(s)
- Yali Liu
- Department of Pharmaceutical Technology, Faculty of Science, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 8, 72076 Tuebingen, Germany
| | - Dominique Jasmin Lunter
- Department of Pharmaceutical Technology, Faculty of Science, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 8, 72076 Tuebingen, Germany.
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Yaman H, Aykas DP, Jiménez-Flores R, Rodriguez-Saona LE. Monitoring the ripening attributes of Turkish white cheese using miniaturized vibrational spectrometers. J Dairy Sci 2021; 105:40-55. [PMID: 34696910 DOI: 10.3168/jds.2021-20313] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Accepted: 09/03/2021] [Indexed: 11/19/2022]
Abstract
Monitoring the ripening process by prevalent analytic methods is laborious, expensive, and time consuming. Our objective was to develop a rapid and simple method based on vibrational spectroscopic techniques to understand the biochemical changes occurring during the ripening process of Turkish white cheese and to generate predictive algorithms for the determination of the content of key cheese quality and ripening indicator compounds. Turkish white cheese samples were produced in a pilot plant scale and ripened for 100 d, and samples were analyzed at 20 d intervals during storage. The collected spectra (Fourier-transform infrared, Raman, and near-infrared) correlated with major composition characteristics (fat, protein, and moisture) and primary products of the ripening process and analyzed by pattern recognition to generate prediction (partial least squares regression) and classification (soft independent analysis of class analogy) models. The soft independent analysis of class analogy models classified cheese samples based on the unique biochemical changes taking place during the ripening process. partial least squares regression models showed good correlation (RPre = 0.87 to 0.98) between the predicted values by vibrational spectroscopy and the reference values, giving low standard errors of prediction (0.01 to 0.57). Portable and handheld vibrational spectroscopy units can be used as a rapid, simple, and in situ technique for monitoring the quality of cheese during aging and provide real-time tools for addressing deviations in manufacturing.
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Affiliation(s)
- Hulya Yaman
- Department of Food Science and Technology, The Ohio State University, 2015 Fyffe Road, Columbus 43210; Department of Food Processing, Bolu Abant Izzet Baysal University, Bolu, Turkey 14100
| | - Didem P Aykas
- Department of Food Science and Technology, The Ohio State University, 2015 Fyffe Road, Columbus 43210; Department of Food Engineering, Faculty of Engineering, Adnan Menderes University, Aydin, 09100, Turkey
| | - Rafael Jiménez-Flores
- Department of Food Science and Technology, The Ohio State University, 2015 Fyffe Road, Columbus 43210
| | - Luis E Rodriguez-Saona
- Department of Food Science and Technology, The Ohio State University, 2015 Fyffe Road, Columbus 43210.
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Raj T, Hashim FH, Huddin AB, Hussain A, Ibrahim MF, Abdul PM. Classification of oil palm fresh fruit maturity based on carotene content from Raman spectra. Sci Rep 2021; 11:18315. [PMID: 34526627 PMCID: PMC8443547 DOI: 10.1038/s41598-021-97857-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Accepted: 08/27/2021] [Indexed: 11/30/2022] Open
Abstract
The oil yield, measured in oil extraction rate per hectare in the palm oil industry, is directly affected by the ripening levels of the oil palm fresh fruit bunches at the point of harvesting. A rapid, non-invasive and reliable method in assessing the maturity level of oil palm harvests will enable harvesting at an optimum time to increase oil yield. This study shows the potential of using Raman spectroscopy to assess the ripeness level of oil palm fruitlets. By characterizing the carotene components as useful ripeness features, an automated ripeness classification model has been created using machine learning. A total of 46 oil palm fruit spectra consisting of 3 ripeness categories; under ripe, ripe, and over ripe, were analyzed in this work. The extracted features were tested with 19 classification techniques to classify the oil palm fruits into the three ripeness categories. The Raman peak averaging at 1515 cm−1 is shown to be a significant molecular fingerprint for carotene levels, which can serve as a ripeness indicator in oil palm fruits. Further signal analysis on the Raman peak reveals 4 significant sub bands found to be lycopene (ν1a), β-carotene (ν1b), lutein (ν1c) and neoxanthin (ν1d) which originate from the C=C stretching vibration of carotenoid molecules found in the peel of the oil palm fruit. The fine KNN classifier is found to provide the highest overall accuracy of 100%. The classifier employs 6 features: peak intensities of bands ν1a to ν1d and peak positions of bands ν1c and ν1d as predictors. In conclusion, the Raman spectroscopy method has the potential to provide an accurate and effective way in determining the ripeness of oil palm fresh fruits.
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Affiliation(s)
- Thinal Raj
- Department of Electrical, Electronic and Systems Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, 43600, Bangi Selangor, Malaysia.
| | - Fazida Hanim Hashim
- Department of Electrical, Electronic and Systems Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, 43600, Bangi Selangor, Malaysia.
| | - Aqilah Baseri Huddin
- Department of Electrical, Electronic and Systems Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, 43600, Bangi Selangor, Malaysia
| | - Aini Hussain
- Department of Electrical, Electronic and Systems Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, 43600, Bangi Selangor, Malaysia
| | - Mohd Faisal Ibrahim
- Department of Electrical, Electronic and Systems Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, 43600, Bangi Selangor, Malaysia
| | - Peer Mohamed Abdul
- Department of Chemical and Process Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, 43600, Bangi Selangor, Malaysia
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Vallejo-Pérez MR, Sosa-Herrera JA, Navarro-Contreras HR, Álvarez-Preciado LG, Rodríguez-Vázquez ÁG, Lara-Ávila JP. Raman Spectroscopy and Machine-Learning for Early Detection of Bacterial Canker of Tomato: The Asymptomatic Disease Condition. PLANTS (BASEL, SWITZERLAND) 2021; 10:1542. [PMID: 34451590 PMCID: PMC8399098 DOI: 10.3390/plants10081542] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 07/17/2021] [Accepted: 07/22/2021] [Indexed: 12/20/2022]
Abstract
Bacterial canker of tomato is caused by Clavibacter michiganensis subsp. michiganensis (Cmm). The disease is highly destructive, because it produces latent asymptomatic infections that favor contagion rates. The present research aims consisted on the implementation of Raman spectroscopy (RS) and machine-learning spectral analysis as a method for the early disease detection. Raman spectra were obtained from infected asymptomatic tomato plants (BCTo) and healthy controls (HTo) with 785 nm excitation laser micro-Raman spectrometer. Spectral data were normalized and processed by principal component analysis (PCA), then the classifiers algorithms multilayer perceptron (PCA + MLP) and linear discriminant analysis (PCA + LDA) were implemented. Bacterial isolation and identification (16S rRNA gene sequencing) were realized of each plant studied. The Raman spectra obtained from tomato leaf samples of HTo and BCTo exhibited peaks associated to cellular components, and the most prominent vibrational bands were assigned to carbohydrates, carotenoids, chlorophyll, and phenolic compounds. Biochemical changes were also detectable in the Raman spectral patterns. Raman bands associated with triterpenoids and flavonoids compounds can be considered as indicators of Cmm infection during the asymptomatic stage. RS is an efficient, fast and reliable technology to differentiate the tomato health condition (BCTo or HTo). The analytical method showed high performance values of sensitivity, specificity and accuracy, among others.
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Affiliation(s)
- Moisés Roberto Vallejo-Pérez
- Consejo Nacional de Ciencia y Tecnología-Universidad Autónoma de San Luis Potosí, CIACYT, Alvaro Obregon 64, Col. Centro, San Luis Potosí 78000, Mexico
- Coordinación para la Innovación y la Aplicación de la Ciencia y la Tecnología (CIACYT), Universidad Autónoma de San Luis Potosí, Av. Sierra Leona 550, Col Lomas 2a. Sección, San Luis Potosí 78210, Mexico; (H.R.N.-C.); (L.G.Á.-P.); (Á.G.R.-V.)
| | - Jesús Antonio Sosa-Herrera
- Consejo Nacional de Ciencia y Tecnología-Centro de Investigación en Ciencias de Información Geoespacial A. C., Laboratorio Nacional de Geointeligencia, Aguascalientes 20313, Mexico;
| | - Hugo Ricardo Navarro-Contreras
- Coordinación para la Innovación y la Aplicación de la Ciencia y la Tecnología (CIACYT), Universidad Autónoma de San Luis Potosí, Av. Sierra Leona 550, Col Lomas 2a. Sección, San Luis Potosí 78210, Mexico; (H.R.N.-C.); (L.G.Á.-P.); (Á.G.R.-V.)
| | - Luz Gabriela Álvarez-Preciado
- Coordinación para la Innovación y la Aplicación de la Ciencia y la Tecnología (CIACYT), Universidad Autónoma de San Luis Potosí, Av. Sierra Leona 550, Col Lomas 2a. Sección, San Luis Potosí 78210, Mexico; (H.R.N.-C.); (L.G.Á.-P.); (Á.G.R.-V.)
| | - Ángel Gabriel Rodríguez-Vázquez
- Coordinación para la Innovación y la Aplicación de la Ciencia y la Tecnología (CIACYT), Universidad Autónoma de San Luis Potosí, Av. Sierra Leona 550, Col Lomas 2a. Sección, San Luis Potosí 78210, Mexico; (H.R.N.-C.); (L.G.Á.-P.); (Á.G.R.-V.)
| | - José Pablo Lara-Ávila
- Facultad de Agronomía y Veterinaria, Universidad Autónoma de San Luis Potosí, Km. 14.5 Carretera San Luis Potosí, Matehuala, Ejido Palma de la Cruz, Soledad de Graciano Sánchez, San Luis Potosí 78321, Mexico;
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A Four-Level Maturity Index for Hot Peppers (Capsicum annum) Using Non-Invasive Automated Mobile Raman Spectroscopy for On-Site Testing. APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app11041614] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
A handheld Raman spectrometer was used to determine the ripeness of peppers. Raman spectra were recorded non-invasively on the fruit surface. The spectroscopic data were transformed into a classification scheme referred to as the maturity index which allowed for attribution of the fruit stadium to four levels from immature to fully mature. Hot pepper and tomato ripening includes pectic polysaccharide depolymerization, chlorophyll degradation and carotenoid formation, among others. The latter were followed non-invasively by Raman spectroscopy. Two portable systems and one benchtop system were compared for their applicability and robustness to establish a suitable maturity index. Spectral acquisition, data treatment and multivariate data analysis were automated using a Matlab script on a laptop computer. The automated workflow provided a graphic visualization of the relevant parameters and results on-site in real time. In terms of reliability and applicability, the chemometric model to determine the maturity of fruits was compared to a univariate procedure based on the average intensity and ratio of three characteristic signals. Portable Raman spectrometers in combination with the maturity index or a chemometric model should be suitable to assess the stage of maturing for carotenoid-containing fruits and thus to determine ripeness on-site or during a sorting process in an automated manner.
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Abstract
Raman imaging is a microspectroscopic approach revealing the chemistry and structure of plant cell walls in situ on the micro- and nanoscale. The method is based on the Raman effect (inelastic scattering) that takes place when monochromatic laser light interacts with matter. The scattered light conveys a change in energy that is inherent of the involved molecule vibrations. The Raman spectra are thus characteristic for the chemical structure of the molecules and can be recorded spatially ordered with a lateral resolution of about 300 nm. Based on thousands of acquired Raman spectra, images can be assessed using univariate as well as multivariate data analysis approaches. One advantage compared to staining or labeling techniques is that not only one image is obtained as a result but different components and characteristics can be displayed in several images. Furthermore, as every pixel corresponds to a Raman spectrum, which is a kind of "molecular fingerprint," the imaging results should always be evaluated and further details revealed by analysis (e.g., band assignment) of extracted spectra. In this chapter, the basic theoretical background of the technique and instrumentation are described together with sample preparation requirements and tips for high-quality plant tissue sections and successful Raman measurements. Typical Raman spectra of the different plant cell wall components are shown as well as an exemplified analysis of Raman data acquired on the model plant Arabidopsis. Important preprocessing methods of the spectra are included as well as single component image generation (univariate) and spectral unmixing by means of multivariate approaches (e.g., vertex component analysis).
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Affiliation(s)
- Batirtze Prats Mateu
- Department of Nanobiotechnology, Institute of Biophysics, BOKU-University of Natural Resources and Life Sciences, Vienna, Austria
| | - Peter Bock
- Department of Nanobiotechnology, Institute of Biophysics, BOKU-University of Natural Resources and Life Sciences, Vienna, Austria
| | - Notburga Gierlinger
- Department of Nanobiotechnology, Institute of Biophysics, BOKU-University of Natural Resources and Life Sciences, Vienna, Austria.
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12
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Rapid quantitative determination of chlorpyrifos pesticide residues in tomatoes by surface-enhanced Raman spectroscopy. Eur Food Res Technol 2019. [DOI: 10.1007/s00217-019-03408-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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13
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Sharma S, Uttam R, Bharti AS, Shukla N, Uttam KN. Label-Free Mapping of the Biochemicals in Tomato Fruit by Confocal Raman Microspectroscopy. NATIONAL ACADEMY SCIENCE LETTERS 2019. [DOI: 10.1007/s40009-018-0747-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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14
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Skolik P, Morais CLM, Martin FL, McAinsh MR. Determination of developmental and ripening stages of whole tomato fruit using portable infrared spectroscopy and Chemometrics. BMC PLANT BIOLOGY 2019; 19:236. [PMID: 31164091 PMCID: PMC6549295 DOI: 10.1186/s12870-019-1852-5] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Accepted: 05/28/2019] [Indexed: 06/09/2023]
Abstract
BACKGROUND Development and ripening of tomato (Solanum lycopersicum) fruit are important processes for the study of crop biology related to industrial horticulture. Versatile uses of tomato fruit lead to its harvest at various points of development from early maturity through to red ripe, traditionally indicated by parameters such as size, weight, colour, and internal composition, according to defined visual 'grading' schemes. Visual grading schemes however are subjective and thus objective classification of tomato fruit development and ripening are needed for 'high-tech' horticulture. To characterize the development and ripening processes in whole tomato fruit (cv. Moneymaker), a biospectroscopy approach is employed using compact portable ATR-FTIR spectroscopy coupled with chemometrics. RESULTS The developmental and ripening processes showed unique spectral profiles, which were acquired from the cuticle-cell wall complex of tomato fruit epidermis in vivo. Various components of the cuticle including Cutin, waxes, and phenolic compounds, among others, as well as from the underlying cell wall such as celluloses, pectin and lignin like compounds among others. Epidermal surface structures including cuticle and cell wall were significantly altered during the developmental process from immature green to mature green, as well as during the ripening process. Changes in the spectral fingerprint region (1800-900 cm- 1) were sufficient to identify nine developmental and six ripening stages with high accuracy using support vector machine (SVM) chemometrics. CONCLUSIONS The non-destructive spectroscopic approach may therefore be especially useful for investigating in vivo biochemical changes occurring in fruit epidermis related to grades of tomato during development and ripening, for autonomous food production/supply chain applications.
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Affiliation(s)
- Paul Skolik
- Lancaster Environment Centre, Lancaster University, Bailrigg, Lancaster, LA1 4YQ UK
| | - Camilo L. M. Morais
- School of Pharmacy and Biomedical Sciences, University of Central Lancashire, Preston, PR1 2HE UK
| | - Francis L. Martin
- School of Pharmacy and Biomedical Sciences, University of Central Lancashire, Preston, PR1 2HE UK
| | - Martin R. McAinsh
- Lancaster Environment Centre, Lancaster University, Bailrigg, Lancaster, LA1 4YQ UK
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Skolik P, McAinsh MR, Martin FL. ATR-FTIR spectroscopy non-destructively detects damage-induced sour rot infection in whole tomato fruit. PLANTA 2019; 249:925-939. [PMID: 30488286 DOI: 10.1007/s00425-018-3060-1] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2018] [Accepted: 11/23/2018] [Indexed: 05/20/2023]
Abstract
ATR-FTIR spectroscopy with subsequent multivariate analysis non-destructively identifies plant-pathogen interactions during disease progression, both directly and indirectly, through alterations in the spectral fingerprint. Plant-environment interactions are essential to understanding crop biology, optimizing crop use, and minimizing loss to ensure food security. Damage-induced pathogen infection of delicate fruit crops such as tomato (Solanum lycopersicum) are therefore important processes related to crop biology and modern horticulture. Fruit epidermis as a first barrier at the plant-environment interface, is specifically involved in environmental interactions and often shows substantial structural and functional changes in response to unfavourable conditions. Methods available to investigate such systems in their native form, however, are limited by often required and destructive sample preparation, or scarce amounts of molecular level information. To explore biochemical changes and evaluate diagnostic potential for damage-induced pathogen infection of cherry tomato (cv. Piccolo) both directly and indirectly, mid-infrared (MIR) spectroscopy was applied in combination with exploratory multivariate analysis. ATR-FTIR fingerprint spectra (1800-900 cm-1) of healthy, damaged or sour rot-infected tomato fruit were acquired and distinguished using principal component analysis and linear discriminant analysis (PCA-LDA). Main biochemical constituents of healthy tomato fruit epidermis are characterized while multivariate analysis discriminated subtle biochemical changes distinguishing healthy tomato from damaged, early or late sour rot-infected tomato indirectly based solely on changes in the fruit epidermis. Sour rot causing agent Geotrichum candidum was detected directly in vivo and characterized based on spectral features distinct from tomato fruit. Diagnostic potential for indirect pathogen detection based on tomato fruit skin was evaluated using the linear discriminant classifier (PCA-LDC). Exploratory and diagnostic analysis of ATR-FTIR spectra offers biological insights and detection potential for intact plant-pathogen systems as they are found in horticultural industries.
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Affiliation(s)
- Paul Skolik
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
| | - Martin R McAinsh
- Lancaster Environment Centre, Lancaster University, Lancaster, UK.
| | - Francis L Martin
- School of Pharmacy and Biomedical Sciences, University of Central Lancashire, Preston, UK.
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Sharma S, Sarika Bharti A, Singh R, Uttam KN. Non-destructive Phenotyping of Chili Pepper Ripening Using Spectroscopic Probes: A Potential Approach for Shelf-Life Measurement. ANAL LETT 2019. [DOI: 10.1080/00032719.2018.1558231] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Sweta Sharma
- Department of Botany, University of Allahabad, Allahabad, India
| | - Abhi Sarika Bharti
- Centre for Environmental Science, Department of Botany, University of Allahabad, Allahabad, India
| | - Renu Singh
- Department of Physics, Saha’s Spectroscopy Laboratory, University of Allahabad, Allahabad, India
| | - K. N. Uttam
- Department of Physics, Saha’s Spectroscopy Laboratory, University of Allahabad, Allahabad, India
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17
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Skolik P, McAinsh MR, Martin FL. Biospectroscopy for Plant and Crop Science. VIBRATIONAL SPECTROSCOPY FOR PLANT VARIETIES AND CULTIVARS CHARACTERIZATION 2018. [DOI: 10.1016/bs.coac.2018.03.001] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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18
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Determination of Antioxidant Activity and Polyphenols Content in Chips by Raman and IR Spectroscopy. FOOD ANAL METHOD 2017. [DOI: 10.1007/s12161-017-0972-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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19
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Trebolazabala J, Maguregui M, Morillas H, de Diego A, Madariaga JM. Portable Raman spectroscopy for an in-situ monitoring the ripening of tomato (Solanum lycopersicum) fruits. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 180:138-143. [PMID: 28284159 DOI: 10.1016/j.saa.2017.03.024] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2016] [Revised: 02/11/2017] [Accepted: 03/06/2017] [Indexed: 06/06/2023]
Abstract
Ripening is one of the most important transformations that fruits and vegetables suffer, from an unripe to a ripe stage. In this study, it was followed up and analyzed the variations in the composition of tomato fruits at different ripening stages (green or unripe, orange or middle ripe, red or ripe and brown or overripe). The results obtained from the Raman measurements carried out showed a change in the composition of tomato fruits in the transit from green to brown. The analysis confirmed an increase of carotenoids from an unripe to a ripe stage of these fruits, being lycopene the characteristic carotenoid of the optimum ripe stage. The presence of chlorophyll and cuticular waxes decrease from the unripe to the ripe stage. Moreover, the relative intensity of phytofluene, a transition compound in the carotenoid biosynthetic pathway, is higher in the orange or middle ripening stage. The results obtained in-situ, without cutting and handling the tomato fruits, by means of a portable Raman spectrometer offered the same information that can be achieved using a more expensive and sophisticated confocal Raman microscope.
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Affiliation(s)
- Josu Trebolazabala
- Department of Analytical Chemistry, Faculty of Science and Technology, University of the Basque Country UPV/EHU, P.O. Box 644, 48080 Bilbao, Basque Country, Spain
| | - Maite Maguregui
- Department of Analytical Chemistry, Faculty of Pharmacy, University of the Basque Country UPV/EHU, P.O. Box 450, 01080 Vitoria-Gasteiz, Basque Country, Spain
| | - Héctor Morillas
- Department of Analytical Chemistry, Faculty of Science and Technology, University of the Basque Country UPV/EHU, P.O. Box 644, 48080 Bilbao, Basque Country, Spain.
| | - Alberto de Diego
- Department of Analytical Chemistry, Faculty of Science and Technology, University of the Basque Country UPV/EHU, P.O. Box 644, 48080 Bilbao, Basque Country, Spain
| | - Juan Manuel Madariaga
- Department of Analytical Chemistry, Faculty of Science and Technology, University of the Basque Country UPV/EHU, P.O. Box 644, 48080 Bilbao, Basque Country, Spain
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20
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Martin D, Gonzalvez AG, Medina RM, González Ureña A. Modeling Tomato Ripening Based on Carotenoid Raman Spectroscopy: Experimental Versus Kinetic Model. APPLIED SPECTROSCOPY 2017; 71:1310-1320. [PMID: 28534677 DOI: 10.1177/0003702816681012] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
This work reports on a combined experimental and theoretical investigation on the carotenoid Raman signal in several tomato fruits during their postharvest time evolution and ripening. Both resonant (180°) backscattering and polarized (90°) Raman scattering were used to monitor the most prominent bands of carotenoid (lycopene and β-carotene) evolution in different tomato varieties. Relevant findings of the present investigations were that while the depolarization ratio of the ν1 band hardly changed with time, the Raman ν1 band intensity did change showing a similar pattern for all tomatoes investigated. Indeed, all cases investigated revealed a rise of the carotenoid signal coincident with the onset of the turning stage of the fruit ripening, a pronounced maximum of the Raman signal followed by a post-maximum decline at the red ripening stage. A kinetic model has been developed to describe the time evolution of the observed Raman signatures based on the rate coefficient of the carotenoid synthesis and the time evolution of the scattering coefficient of the fruit. The model describes satisfactorily the tomato evolution through the distinct ripening stages providing new insight on the assessment of the postharvest fruit control and quality.
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Affiliation(s)
- Daniel Martin
- Unidad de Láseres y Haces Moleculares, Instituto Pluridisciplinar, Universidad Complutense de Madrid, Madrid, Spain
| | - Alicia G Gonzalvez
- Unidad de Láseres y Haces Moleculares, Instituto Pluridisciplinar, Universidad Complutense de Madrid, Madrid, Spain
| | - Rocio Mateos Medina
- Unidad de Láseres y Haces Moleculares, Instituto Pluridisciplinar, Universidad Complutense de Madrid, Madrid, Spain
| | - Angel González Ureña
- Unidad de Láseres y Haces Moleculares, Instituto Pluridisciplinar, Universidad Complutense de Madrid, Madrid, Spain
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21
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Li JL, Sun DW, Cheng JH. Recent Advances in Nondestructive Analytical Techniques for Determining the Total Soluble Solids in Fruits: A Review. Compr Rev Food Sci Food Saf 2016; 15:897-911. [DOI: 10.1111/1541-4337.12217] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2016] [Revised: 05/22/2016] [Accepted: 05/24/2016] [Indexed: 12/13/2022]
Affiliation(s)
- Jiang-Lin Li
- School of Food Science and Engineering; South China Univ. of Technology; Guangzhou 510641 China
- Academy of Contemporary Food Engineering, South China Univ. of Technology; Guangzhou Higher Education Mega Center; Guangzhou 510006 China
| | - Da-Wen Sun
- School of Food Science and Engineering; South China Univ. of Technology; Guangzhou 510641 China
- Academy of Contemporary Food Engineering, South China Univ. of Technology; Guangzhou Higher Education Mega Center; Guangzhou 510006 China
- Food Refrigeration and Computerized Food Technology (FRCFT), Agriculture and Food Science Centre; Univ. College Dublin, Natl. Univ. of Ireland; Belfield Dublin 4 Ireland
| | - Jun-Hu Cheng
- School of Food Science and Engineering; South China Univ. of Technology; Guangzhou 510641 China
- Academy of Contemporary Food Engineering, South China Univ. of Technology; Guangzhou Higher Education Mega Center; Guangzhou 510006 China
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22
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Gandolfo DS, Mortimer H, Woodhall JW, Boonham N. Fourier transform infra-red spectroscopy using an attenuated total reflection probe to distinguish between Japanese larch, pine and citrus plants in healthy and diseased states. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2016; 163:181-8. [PMID: 27054703 DOI: 10.1016/j.saa.2016.03.022] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2014] [Revised: 03/14/2016] [Accepted: 03/20/2016] [Indexed: 05/23/2023]
Abstract
FTIR spectroscopy coupled with an Attenuated Total Reflection (ATR) sampling probe has been demonstrated as a technique for detecting disease in plants. Spectral differences were detected in Japanese Larch (Larix kaempferi) infected with Phytophthora ramorum at 3403cm(-1) and 1730cm(-1), from pine (Pinus spp.) infected with Bursaphelenchus xylophilus at 1070cm(-1), 1425cm(-)1, 1621cm(-1) and 3403cm(-1) and from citrus (Citrus spp.) infected with 'Candidatus liberibacter' at 960cm(-1), 1087cm(-1), 1109cm(-1), 1154cm(-1), 1225cm(-1), 1385cm(-1), 1462cm(-1), 1707cm(-1), 2882cm(-1), 2982cm(-1) and 3650cm(-1). A spectral marker in healthy citrus has been identified as Pentanone but is absent from the diseased sample spectra. This agrees with recent work by Aksenov, 2014. Additionally, the spectral signature of Cutin was identified in the spectra of Pinus spp. and Citrus spp. and is consistent with work by Dubis, 1999 and Heredia-Guerrero, 2014.
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Affiliation(s)
- D S Gandolfo
- RAL Space, Science and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Oxford, Didcot OX11 0QX, United Kingdom.
| | - H Mortimer
- RAL Space, Science and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Oxford, Didcot OX11 0QX, United Kingdom
| | - J W Woodhall
- The Food and Environment Research Agency, Sand Hutton, York, YO41 1LZ, United Kingdom
| | - N Boonham
- The Food and Environment Research Agency, Sand Hutton, York, YO41 1LZ, United Kingdom
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23
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Prats Mateu B, Hauser MT, Heredia A, Gierlinger N. Waterproofing in Arabidopsis: Following Phenolics and Lipids In situ by Confocal Raman Microscopy. Front Chem 2016; 4:10. [PMID: 26973831 PMCID: PMC4770935 DOI: 10.3389/fchem.2016.00010] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Accepted: 02/11/2016] [Indexed: 12/28/2022] Open
Abstract
Waterproofing of the aerial organs of plants imposed a big evolutionary step during the colonization of the terrestrial environment. The main plant polymers responsible of water repelling are lipids and lignin, which play also important roles in the protection against biotic/abiotic stresses, regulation of flux of gases and solutes, and mechanical stability against negative pressure, among others. While the lipids, non-polymerized cuticular waxes together with the polymerized cutin, protect the outer surface, lignin is confined to the secondary cell wall within mechanical important tissues. In the present work a micro cross-section of the stem of Arabidopsis thaliana was used to track in situ the distribution of these non-carbohydrate polymers by Confocal Raman Microscopy. Raman hyperspectral imaging gives a molecular fingerprint of the native waterproofing tissues and cells with diffraction limited spatial resolution (~300 nm) at relatively high speed and without any tedious sample preparation. Lipids and lignified tissues as well as their effect on water content was directly visualized by integrating the 1299, 1600, and 3400 cm(-1) band, respectively. For detailed insights into compositional changes of these polymers vertex component analysis was performed on selected sample positions. Changes have been elucidated in the composition of lignin within the lignified tissues and between interfascicular fibers and xylem vessels. Hydrophobizing changes were revealed from the epidermal layer to the cuticle as well as a change in the aromatic composition within the cuticle of trichomes. To verify Raman signatures of different waterproofing polymers additionally Raman spectra of the cuticle and cutin monomer from tomato (Solanum lycopersicum) as well as aromatic model polymers (milled wood lignin and dehydrogenation polymer of coniferyl alcohol) and phenolic acids were acquired.
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Affiliation(s)
- Batirtze Prats Mateu
- Department of Material Sciences and Process Engineering, University of Natural Resources and Life SciencesVienna, Austria
| | - Marie Theres Hauser
- Department of Applied Genetics and Cell Biology, University of Natural Resources and Life SciencesVienna, Austria
| | - Antonio Heredia
- Department of Molecular Biology and Biochemistry, University of MalagaMalaga, Spain
| | - Notburga Gierlinger
- Department of Material Sciences and Process Engineering, University of Natural Resources and Life SciencesVienna, Austria
- Institute for Building Materials, Eidgenössische Technische Hochschule ZürichZürich, Switzerland
- Applied Wood Research Laboratory, Empa-Swiss Federal Laboratories for Material Testing and ResearchDübendorf, Switzerland
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Radu AI, Ryabchykov O, Bocklitz TW, Huebner U, Weber K, Cialla-May D, Popp J. Toward food analytics: fast estimation of lycopene and β-carotene content in tomatoes based on surface enhanced Raman spectroscopy (SERS). Analyst 2016; 141:4447-55. [DOI: 10.1039/c6an00390g] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The application of SERS toward the differentiation of two carotenoid molecules (namely, lycopene and β-carotene) in tomato samples is introduced.
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Affiliation(s)
- Andreea Ioana Radu
- Friedrich Schiller University Jena
- Institute of Physical Chemistry and Abbe Center of Photonics
- 07745 Jena
- Germany
- Leibniz Institute of Photonic Technology Jena
| | - Oleg Ryabchykov
- Friedrich Schiller University Jena
- Institute of Physical Chemistry and Abbe Center of Photonics
- 07745 Jena
- Germany
- Leibniz Institute of Photonic Technology Jena
| | - Thomas Wilhelm Bocklitz
- Friedrich Schiller University Jena
- Institute of Physical Chemistry and Abbe Center of Photonics
- 07745 Jena
- Germany
- Leibniz Institute of Photonic Technology Jena
| | - Uwe Huebner
- Leibniz Institute of Photonic Technology Jena
- 07745 Jena
- Germany
| | - Karina Weber
- Friedrich Schiller University Jena
- Institute of Physical Chemistry and Abbe Center of Photonics
- 07745 Jena
- Germany
- Leibniz Institute of Photonic Technology Jena
| | - Dana Cialla-May
- Friedrich Schiller University Jena
- Institute of Physical Chemistry and Abbe Center of Photonics
- 07745 Jena
- Germany
- Leibniz Institute of Photonic Technology Jena
| | - Jürgen Popp
- Friedrich Schiller University Jena
- Institute of Physical Chemistry and Abbe Center of Photonics
- 07745 Jena
- Germany
- Leibniz Institute of Photonic Technology Jena
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Radu AI, Ussembayev YY, Jahn M, Schubert US, Weber K, Cialla-May D, Hoeppener S, Heisterkamp A, Popp J. HD DVD substrates for surface enhanced Raman spectroscopy analysis: fabrication, theoretical predictions and practical performance. RSC Adv 2016. [DOI: 10.1039/c6ra06029c] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Commercially available HD-DVD templates have been used to theoretically predict the occurrence of surface plasmons supermodes which improve the detection of surface enhanced Raman signals.
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Affiliation(s)
- A. I. Radu
- Friedrich Schiller University Jena
- Institute of Physical Chemistry and Abbe Center of Photonics
- 07745 Jena
- Germany
- Leibniz Institute of Photonic Technology Jena
| | - Ye. Ye. Ussembayev
- Laboratory of Organic and Macromolecular Chemistry (IOMC)
- Friedrich Schiller University Jena
- 07743 Jena
- Germany
- Jena Center for Soft Matter (JCSM)
| | - M. Jahn
- Friedrich Schiller University Jena
- Institute of Physical Chemistry and Abbe Center of Photonics
- 07745 Jena
- Germany
- Leibniz Institute of Photonic Technology Jena
| | - U. S. Schubert
- Laboratory of Organic and Macromolecular Chemistry (IOMC)
- Friedrich Schiller University Jena
- 07743 Jena
- Germany
- Jena Center for Soft Matter (JCSM)
| | - K. Weber
- Friedrich Schiller University Jena
- Institute of Physical Chemistry and Abbe Center of Photonics
- 07745 Jena
- Germany
- Leibniz Institute of Photonic Technology Jena
| | - D. Cialla-May
- Friedrich Schiller University Jena
- Institute of Physical Chemistry and Abbe Center of Photonics
- 07745 Jena
- Germany
- Leibniz Institute of Photonic Technology Jena
| | - S. Hoeppener
- Laboratory of Organic and Macromolecular Chemistry (IOMC)
- Friedrich Schiller University Jena
- 07743 Jena
- Germany
- Jena Center for Soft Matter (JCSM)
| | - A. Heisterkamp
- Institute of Applied Optics
- Friedrich Schiller University
- 07743 Jena
- Germany
| | - J. Popp
- Friedrich Schiller University Jena
- Institute of Physical Chemistry and Abbe Center of Photonics
- 07745 Jena
- Germany
- Leibniz Institute of Photonic Technology Jena
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Towards SERS based applications in food analytics: Lipophilic sensor layers for the detection of Sudan III in food matrices. Anal Chim Acta 2015; 860:43-50. [DOI: 10.1016/j.aca.2015.01.005] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2014] [Revised: 12/10/2014] [Accepted: 01/04/2015] [Indexed: 01/12/2023]
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27
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Boyaci IH, Temiz HT, Geniş HE, Acar Soykut E, Yazgan NN, Güven B, Uysal RS, Bozkurt AG, İlaslan K, Torun O, Dudak Şeker FC. Dispersive and FT-Raman spectroscopic methods in food analysis. RSC Adv 2015. [DOI: 10.1039/c4ra12463d] [Citation(s) in RCA: 92] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
Raman spectroscopy is a powerful technique for molecular analysis of food samples.
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Affiliation(s)
- Ismail Hakki Boyaci
- Department of Food Engineering
- Faculty of Engineering
- Hacettepe University
- 06800 Ankara
- Turkey
| | - Havva Tümay Temiz
- Department of Food Engineering
- Faculty of Engineering
- Hacettepe University
- 06800 Ankara
- Turkey
| | - Hüseyin Efe Geniş
- Department of Food Engineering
- Faculty of Engineering
- Hacettepe University
- 06800 Ankara
- Turkey
| | | | - Nazife Nur Yazgan
- Department of Food Engineering
- Faculty of Engineering
- Hacettepe University
- 06800 Ankara
- Turkey
| | - Burcu Güven
- Department of Food Engineering
- Faculty of Engineering
- Hacettepe University
- 06800 Ankara
- Turkey
| | - Reyhan Selin Uysal
- Department of Food Engineering
- Faculty of Engineering
- Hacettepe University
- 06800 Ankara
- Turkey
| | - Akif Göktuğ Bozkurt
- Department of Food Engineering
- Faculty of Engineering
- Hacettepe University
- 06800 Ankara
- Turkey
| | - Kerem İlaslan
- Department of Food Engineering
- Faculty of Engineering
- Hacettepe University
- 06800 Ankara
- Turkey
| | - Ozlem Torun
- Department of Food Engineering
- Faculty of Engineering
- Hacettepe University
- 06800 Ankara
- Turkey
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In situ evaluation of Paenibacillus alvei in reducing carriage of Salmonella enterica serovar Newport on whole tomato plants. Appl Environ Microbiol 2014; 80:3842-9. [PMID: 24747888 DOI: 10.1128/aem.00835-14] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Recently, tomatoes have been implicated as a primary vehicle in food-borne outbreaks of Salmonella enterica serovar Newport and other Salmonella serovars. Long-term intervention measures to reduce Salmonella prevalence on tomatoes remain elusive for growing and postharvest environments. A naturally occurring bacterium identified by 16S rRNA gene sequencing as Paenibacillus alvei was isolated epiphytically from plants native to the Virginia Eastern Shore tomato-growing region. After initial antimicrobial activity screening against Salmonella and 10 other bacterial pathogens associated with the human food supply, strain TS-15 was further used to challenge an attenuated strain of S. Newport on inoculated fruits, leaves, and blossoms of tomato plants in an insect-screened high tunnel with a split-plot design. Survival of Salmonella after inoculation was measured for groups with and those without the antagonist at days 0, 1, 2, and 3 and either day 5 for blossoms or day 6 for fruits and leaves. Strain TS-15 exhibited broad-range antimicrobial activity against both major food-borne pathogens and major bacterial phytopathogens of tomato. After P. alvei strain TS-15 was applied onto the fruits, leaves, and blossoms of tomato plants, the concentration of S. Newport declined significantly (P ≤ 0.05) compared with controls. Astonishingly, >90% of the plants had no detectable levels of Salmonella by day 5 for blossoms. The naturally occurring antagonist strain TS-15 is highly effective in reducing the carriage of Salmonella Newport on whole tomato plants. The application of P. alvei strain TS-15 is a promising approach for reducing the risk of Salmonella contamination during tomato production.
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Heredia-Guerrero JA, Benítez JJ, Domínguez E, Bayer IS, Cingolani R, Athanassiou A, Heredia A. Infrared and Raman spectroscopic features of plant cuticles: a review. FRONTIERS IN PLANT SCIENCE 2014; 5:305. [PMID: 25009549 PMCID: PMC4069575 DOI: 10.3389/fpls.2014.00305] [Citation(s) in RCA: 160] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2014] [Accepted: 06/09/2014] [Indexed: 05/04/2023]
Abstract
The cuticle is one of the most important plant barriers. It is an external and continuous lipid membrane that covers the surface of epidermal cells and whose main function is to prevent the massive loss of water. The spectroscopic characterization of the plant cuticle and its components (cutin, cutan, waxes, polysaccharides and phenolics) by infrared and Raman spectroscopies has provided significant advances in the knowledge of the functional groups present in the cuticular matrix and on their structural role, interaction and macromolecular arrangement. Additionally, these spectroscopies have been used in the study of cuticle interaction with exogenous molecules, degradation, distribution of components within the cuticle matrix, changes during growth and development and characterization of fossil plants.
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Affiliation(s)
- José A. Heredia-Guerrero
- Nanophysics, Istituto Italiano di TecnologiaGenova, Italy
- *Correspondence: José A. Heredia-Guerrero, Smart Materials Group, Nanophysics, Istituto Italiano di Tecnologia, Via Morego 30, Genova, 16163, Italy e-mail:
| | - José J. Benítez
- Instituto de Ciencias de Materiales de Sevilla, CSIC-USSeville, Spain
| | - Eva Domínguez
- Instituto de Hortofruticultura Subtropical y Mediterránea La Mayora, CSIC-UMAMálaga, Spain
| | - Ilker S. Bayer
- Nanophysics, Istituto Italiano di TecnologiaGenova, Italy
| | | | | | - Antonio Heredia
- Instituto de Hortofruticultura Subtropical y Mediterránea La Mayora, CSIC-UMAMálaga, Spain
- Departamento de Bioquímica y Biología Molecular, Facultad de Ciencias, Universidad de MálagaMálaga, Spain
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