1
|
Albaqami FF, Sahib AS, Alharthy KM, Altharawi A, Alshahrani MY, Jawad MA, Suliman M, Ahmad I. A phenanthroline-based erbium (III) complex: molecular docking, DNA/BSA -binding and biological evaluation. J Biomol Struct Dyn 2024:1-13. [PMID: 38174386 DOI: 10.1080/07391102.2023.2300130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Accepted: 12/20/2023] [Indexed: 01/05/2024]
Abstract
With the help of both theoretical as well as experimental research, in vitro binding research with CT-DNA (calf thymus) and BSA (bovine serum albumin) were carefully examined to figure out the chemotherapeutic and pharmacokinetic facets of the Erbium complex, which contains 1,10-phenanthroline (Phen). The binding characteristics and the mechanism of complex's interaction with DNA as well as the protein were determined utilizing fluorescence quenching method. Findings indicated that the complex's interaction with DNA via groove binding into DNA's minor grooves, with their binding constants falling within the 104 M-1 range. Furthermore, thermodynamic characteristics and the fluorescence emission of the tryptophan residues of the protein were obtained through fluorescence quenching studies at different temperatures. According to the results of the binding constants, the protein's interactions with the Er- complex were moderate, demonstrating that the compound may be transported effectively by the protein. Molecular docking results supported that of the experimental research. The HeLa and MCF-7 cancer cell lines, along with the normal human fibroblast cell line, were used in an MTT assay evaluation of the Er-complex cytotoxicity. The Er-complex displayed a selective inhibitory effect on the proliferation of different cancer cells.Communicated by Ramaswamy H. Sarma.
Collapse
Affiliation(s)
- Faisal F Albaqami
- Pharmacology and Toxicology Department, College of Pharmacy, Prince Sattam bin Abdulaziz University, AlKharj, Saudi Arabia
| | - Ameer S Sahib
- Department of Pharmacy, Al- Mustaqbal University College, Hilla, Iraq
| | - Khalid M Alharthy
- Pharmacology and Toxicology Department, College of Pharmacy, Prince Sattam bin Abdulaziz University, AlKharj, Saudi Arabia
| | - Ali Altharawi
- Department of Pharmaceutical Chemistry, College of Pharmacy, Prince Sattam Bin Abdulaziz University, Al-Kharj, Saudi Arabia
| | - Mohammad Y Alshahrani
- Department of Clinical Laboratory Sciences, College of Applied Medical Sciences, King Khalid University, Abha, Saudi Arabia
| | - Mohammed Abed Jawad
- Department of Medical Laboratories Technology, Al-Nisour University College, Iraq
| | - Muath Suliman
- Department of Clinical Laboratory Sciences, College of Applied Medical Sciences, King Khalid University, Abha, Saudi Arabia
| | - Irfan Ahmad
- Department of Clinical Laboratory Sciences, College of Applied Medical Sciences, King Khalid University, Abha, Saudi Arabia
| |
Collapse
|
2
|
van Niekerk A, Blanckenberg A, Kimani S, Chakraborty S, Prince S, Chellan P, Mapolie S. Mechanistic insights into the anti-cancer activity of the PEGylated binuclear palladacycle, BTC2, against triple-negative breast cancer. J Inorg Biochem 2023; 243:112191. [PMID: 36996694 DOI: 10.1016/j.jinorgbio.2023.112191] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Revised: 02/28/2023] [Accepted: 03/11/2023] [Indexed: 03/14/2023]
Abstract
Triple-negative breast cancer (TNBC) has a low five-year survival rate, especially if the cancer is diagnosed at a late stage and has already metastasized beyond the breast tissue. Current chemotherapeutic options for TNBC rely on traditional platinum-containing drugs like cisplatin, oxaliplatin and carboplatin. Unfortunately, these drugs are indiscriminately toxic, resulting in severe side effects and the development of drug resistance. Palladium compounds have shown to be viable alternatives to platinum complexes since they are less toxic and have displayed selectivity towards the TNBC cell lines. Here we report the design, synthesis, and characterization of a series of binuclear benzylidene palladacycles with varying phosphine bridging ligands. From this series we have identified BTC2 to be more soluble (28.38-56.77 μg/mL) and less toxic than its predecessor, AJ5, while maintaining its anticancer properties (IC50 (MDA-MB-231) = 0.58 ± 0.012 μM). To complement the previous cell death pathway study of BTC2, we investigated the DNA and BSA binding properties of BTC2 through various spectroscopic and electrophoretic techniques, as well as molecular docking studies. We demonstrate that BTC2 displays multimodal DNA binding properties as both a partial intercalator and groove binder, with the latter being the predominant mode of action. BTC2 was also able to quench the fluorescence of BSA, thereby suggesting that the compound could be transported by albumin in mammalian cells. Molecular docking studies revealed that BTC2 is a major groove binder and binds preferentially to subdomain IIB of BSA. This study provides insight into the influence of the ligands on the activity of the binuclear palladacycles and provides much needed information on the mechanisms through which these complexes elicit their potent anticancer activity.
Collapse
Affiliation(s)
- Annick van Niekerk
- Department of Chemistry and Polymer Science, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa
| | - Angelique Blanckenberg
- Department of Chemistry and Polymer Science, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa
| | - Serah Kimani
- Division of Cell Biology, Department of Human Biology, Faculty of Health Sciences, University of Cape Town, Observatory, 7625, South Africa
| | - Suparna Chakraborty
- Division of Cell Biology, Department of Human Biology, Faculty of Health Sciences, University of Cape Town, Observatory, 7625, South Africa
| | - Sharon Prince
- Division of Cell Biology, Department of Human Biology, Faculty of Health Sciences, University of Cape Town, Observatory, 7625, South Africa
| | - Prinessa Chellan
- Department of Chemistry and Polymer Science, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa
| | - Selwyn Mapolie
- Department of Chemistry and Polymer Science, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa.
| |
Collapse
|
3
|
Fatima A, Kanth SS, Sireesha B. Computational, Equilibrium, Structural, and Biological Study of the Novel 1-Formyl-4-phenyl-3-semicarbazide and Its Complexes. RUSS J GEN CHEM+ 2022. [DOI: 10.1134/s1070363222120210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
|
4
|
Rajeshwari K, Vasantha P, Kumar BS, Lakshmi PVA. Nickel-Metformin Ternary Complexes: Geometrical, Thermal, DNA Binding, and Molecular Docking Studies. Biol Trace Elem Res 2022; 200:5351-5364. [PMID: 34993912 DOI: 10.1007/s12011-022-03100-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/04/2021] [Accepted: 01/02/2022] [Indexed: 11/30/2022]
Abstract
Novel three nickel(II) complexes of type [Ni(metf)(o-phen)2]Cl2 (1), [Ni(metf)(opda)2]Cl2 (2), [Ni(metf)(2-2'bipy)2]Cl2 (3), (Metf = metformin, o-phen = ortho-phenanthroline, opda = ortho-phenylenediamine, 2-2' bipy = 2-2' bipyridyl) were synthesized and characterized by various analytical and spectral techniques. Based on these studies, octahedral geometry is assigned to these complexes. The DNA binding properties of these complexes were investigated by absorption, emission, and viscosity studies. From the spectral data, it was concluded that the complexes bind to DNA through groove mode of binding. The intrinsic binding constants (Kb) from absorption spectroscopy were 1.60 × 104, 3.57 × 104, and 5.70 × 104 M-1 for 1, 2, and 3, respectively, and Stern-Volmer quenching constants (Ksv) from emission spectroscopy were 0.11, 0.87, and 0.24, respectively. Thermal degradation pattern of the compounds was studied and Coats-Redfern method is used to determine kinetic parameters for complexes 1, 2, and 3 from thermal studies. The software Discovery Studio 2.1 was used to assess the binding affinity and interaction pattern of complexes with the B-DNA receptor protein and complex 1 has the highest dock score.
Collapse
Affiliation(s)
- K Rajeshwari
- Department of Chemistry, Osmania University, Tarnaka, Hyderabad, Telangana State, 500007, India
- Department of Chemistry, University College for Women, Osmania University, Koti, Hyderabad, Telangana State, 500095, India
| | - P Vasantha
- Department of Chemistry, Osmania University, Tarnaka, Hyderabad, Telangana State, 500007, India
| | - B Sathish Kumar
- Department of Chemistry, Osmania University, Tarnaka, Hyderabad, Telangana State, 500007, India
| | - P V Anantha Lakshmi
- Department of Chemistry, Osmania University, Tarnaka, Hyderabad, Telangana State, 500007, India.
| |
Collapse
|
5
|
Urçuk A, Eskiköy Bayraktepe D, Yıldız C, Yazan Z. Kinetic and thermodynamic studies on the interaction between calf thymus DNA and food additive vanillin - electrochemical methods. J Mol Liq 2022; 360:119434. [DOI: 10.1016/j.molliq.2022.119434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
6
|
Rajeshwari K, Vasantha P, Shekhar B, Anantha Lakshmi PV. Metformin-Derived Water-Soluble Cobalt Complexes: Thermal, Spectroscopic, DNA Interaction, and Molecular Docking Studies. Appl Biochem Biotechnol 2022. [PMID: 35235135 DOI: 10.1007/s12010-022-03862-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 02/24/2022] [Indexed: 11/02/2022]
Abstract
Novel three water-soluble cobalt (II) complexes of type [Co(metf)(o-phen)2]Cl2 (1), [Co(metf)(opda)2]Cl2 (2), and [Co(metf)(2-2'bipy)2]Cl2 (3) (Metf, metformin; o-phen, ortho-phenanthroline; opda, ortho-phenylenediamine; 2,2'-bipy, 2,2'-bipyridine) were synthesized and characterized by various analytical and spectral techniques. Based on these studies, octahedral geometry is assigned to these complexes. The stability of the complexes has been calculated from quantum chemical parameters using HOMO-LUMO energies. Thermal degradation pattern of the compounds was studied and Coats-Redfern method is used to determine kinetic parameters for complexes 1, 2, and 3 from thermal studies. The DNA interaction of these complexes was investigated by absorption, emission, and viscosity studies. From the spectral data, it was concluded that the complexes bind to DNA through groove mode of binding. The intrinsic binding constants (Kb) from absorption spectroscopy were 2.49 × 104, 2.48 × 104, and 2.64 × 104 M-1 for 1, 2, and 3, respectively, and Stern-Volmer quenching constants (Ksv) from emission spectroscopy were 0.21, 0.20, and 0.13, respectively. These complexes were screened for nuclease activity of pUC19 DNA, in the presence of H2O2. Discovery studio 2.1 software was used to evaluate binding affinity and interaction pattern of complexes with B-DNA receptor protein and the maximum dock score is seen for complex 2.
Collapse
|
7
|
Basha MT, Alghanmi RM, Soliman SM, Abdel-Rahman LH, Shehata MR, Alharby WJ. Synthesis, spectroscopic characterizations, biological activity, DNA-binding investigation combined with DFT studies of new proton-transfer complexes of 2,4-diaminopyrimidine with 2,6-dichloro-4-nitrophenol and 3,5-dinitrosalicylic acid. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.118508] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
|
8
|
Luikham S, Mavani A, Bhattacharyya J. Deciphering binding affinity, energetics, and base specificity of plant alkaloid Harmane with AT & GC hairpin duplex DNA. LUMINESCENCE 2022; 37:691-701. [DOI: 10.1002/bio.4210] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Revised: 02/01/2022] [Accepted: 02/08/2022] [Indexed: 11/09/2022]
Affiliation(s)
- Soching Luikham
- Department of Chemistry National Institute of Technology Nagaland Chumukedima Dimapur Nagaland India
| | - A. Mavani
- Department of Chemistry National Institute of Technology Nagaland Chumukedima Dimapur Nagaland India
| | - Jhimli Bhattacharyya
- Department of Chemistry National Institute of Technology Nagaland Chumukedima Dimapur Nagaland India
| |
Collapse
|
9
|
Shekhar B, Rajeshwari K, Jayasree B, Anantha Lakshmi PV. Novel Metformin complexes: Geometry Optimization, Non‐isothermal Kinetic Parameters, DNA binding, on‐off light switching and Docking studies. Appl Organomet Chem 2022. [DOI: 10.1002/aoc.6601] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- B. Shekhar
- Department of Chemistry University College of Science, Osmania University, Tarnaka Hyderabad Telangana State India
- Department of Chemistry Malla Reddy Engineering College (Autonomous), Maisammaguda Hyderabad
| | - K. Rajeshwari
- Department of Chemistry University College of Science, Osmania University, Tarnaka Hyderabad Telangana State India
| | - B. Jayasree
- Department of Chemistry University College of Science, Osmania University, Tarnaka Hyderabad Telangana State India
| | - P. V. Anantha Lakshmi
- Department of Chemistry University College of Science, Osmania University, Tarnaka Hyderabad Telangana State India
| |
Collapse
|
10
|
Abbass LM, Sadeek SA, Zordok WA, El-Telbany M, El-Shwiniy WH. Synthesis, Structure, DFT, and Biological Activity of Metal Complexes of Norfloxacin and Metformin Mixed Ligand. RUSS J GEN CHEM+ 2021. [DOI: 10.1134/s1070363221090243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
11
|
Fadl A, Sadeek S, Magdy L, Abdou M, El-Shiwiniy W. Multi-functional epoxy composite coating incorporating mixed Cu(II) and Zr(IV) complexes of metformin and 2,2\-bipyridine as intensive network cross-linkers exhibiting anti-corrosion, self-healing and chemical-resistance performances for steel petroleum platforms. ARAB J CHEM 2021. [DOI: 10.1016/j.arabjc.2021.103367] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
|
12
|
Li J, Feng Z, Wang J, Huang G, Yan L. Interaction of aflatoxin G 1 with free DNA in vitro and possibility of its application in removing aflatoxin G 1. J Environ Sci Health B 2021; 56:932-940. [PMID: 34554053 DOI: 10.1080/03601234.2021.1979838] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
The present study sought to evaluate the interaction between aflatoxin G1 and free DNA in vitro through different analytical techniques. The UV-visible spectra results showed that the structure of DNA might be changed with a new aflatoxin G1-DNA complex forming, which indicated that the interacting mode between them was the intercalating mode. The DNA melting temperature increased by 12.80 °C, suggesting that the DNA double helix structure was more compact and stable through intercalation. The circular dichroism (CD) spectra results indicated that the interaction of aflatoxin G1 with DNA induced the DNA base stacking changes. The results of agarose gel electrophoresis and fluorescence microscope further verified that the interacting mode between aflatoxin G1 and DNA was intercalation mode. According to the fluorescence spectrum data, the binding constant was calculated 6.24 × 104 L·mol-1. The thermodynamic results demonstrated that the reaction of aflatoxin G1 intercalating to DNA was a spontaneous reaction. The elimination results suggested that aflatoxin G1 could be enriched and removed by DNA intercalation through magnetic beads separation, with the removal efficiency of 93.73%. The study results would provide a theoretical basis for establishing a new aflatoxin removal method based on DNA intercalation.
Collapse
Affiliation(s)
- Junsheng Li
- Guangxi Key Laboratory of Green Processing of Sugar Resources, Guangxi University of Science and Technology, Guangxi, P. R. China
| | - Zhen Feng
- Guangxi Key Laboratory of Green Processing of Sugar Resources, Guangxi University of Science and Technology, Guangxi, P. R. China
| | - Jingting Wang
- Guangxi Key Laboratory of Green Processing of Sugar Resources, Guangxi University of Science and Technology, Guangxi, P. R. China
- Qilu Institute of Technology, Jinan, Shandong, P. R. China
| | - Guoxia Huang
- Guangxi Key Laboratory of Green Processing of Sugar Resources, Guangxi University of Science and Technology, Guangxi, P. R. China
| | - Liujuan Yan
- Guangxi Key Laboratory of Green Processing of Sugar Resources, Guangxi University of Science and Technology, Guangxi, P. R. China
| |
Collapse
|
13
|
Nemati L, Keypour H, Shahabadi N, Hadidi S, William Gable R. Synthesis, characterization and DNA interaction of a novel Pt(II) macroacyclic Schiff base complex containing the piperazine moiety and its cytotoxicity and molecular docking. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116292] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
|
14
|
Farag MM, Abd El Malak NS, Yehia SA, Ahmed MA. Hyaluronic Acid Conjugated Metformin-Phospholipid Sonocomplex: A Biphasic Complexation Approach to Correct Hypoxic Tumour Microenvironment. Int J Nanomedicine 2021; 16:1005-1019. [PMID: 33603365 PMCID: PMC7885809 DOI: 10.2147/ijn.s297634] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Accepted: 01/14/2021] [Indexed: 01/09/2023] Open
Abstract
Purpose Development of hyaluronic acid conjugated metformin-phospholipid sonocomplexes (HA-MPS), a biphasic complexation product compiled for enhancing both the lipophilicity and targeting potential of Metformin (MET) to CD44 receptors on pancreatic cancer. Methods MET was chemically conjugated to hyaluronic acid (HA) via amide coupling reaction. Then, the HA conjugated MET was physically conjugated to Lipoid™S100 via ultrasound irradiation. A combined D-optimal design was implemented to statistically optimize formulation variables. The HA-MPS were characterized through solubility studies, partition coefficient, drug content uniformity, particle size and zeta potential. The optimized HA-MPS was tested via proton nuclear magnetic resonance, infrared spectroscopy to elucidate the nature of physicochemical interactions in the complex which was further scrutinized on molecular level via molecular docking and dynamic simulation. Results The solubility and partition studies showed a lipophilicity enhancement up to 67 folds as they adopted inverted micelles configuration based on the packing parameter hypothesis. The optimized HA-MPS showed 11.5 folds lower IC50, extra 25% reduction in oxygen consumption rate, better reduction in hypoxia-inducible factor and reactive oxygen species in MiaPaCa-2 cells. Conclusion These results proved better internalization of MET which was reflected by abolishing hypoxic tumour microenvironment, a mainstay toward a normoxic and less resistant pancreatic cancer.
Collapse
Affiliation(s)
- Michael M Farag
- Department of Pharmaceutics and Industrial Pharmacy, Faculty of Pharmacy, Cairo University, Cairo, Egypt
| | - Nevine S Abd El Malak
- Department of Pharmaceutics and Industrial Pharmacy, Faculty of Pharmacy, Cairo University, Cairo, Egypt.,School of Pharmacy, New Giza University, Giza, Egypt
| | - Soad A Yehia
- Department of Pharmaceutics and Industrial Pharmacy, Faculty of Pharmacy, Cairo University, Cairo, Egypt
| | - Mohammed A Ahmed
- Department of Pharmaceutics and Industrial Pharmacy, Faculty of Pharmacy, Cairo University, Cairo, Egypt.,School of Pharmacy, New Giza University, Giza, Egypt
| |
Collapse
|
15
|
Yu H, Li J, Huang G, Yan L, Ma J. Binding Characteristics of Dibenzo[a,h]Anthracene with DNA In Vitro: Investigated by Spectroscopic and Magnetic Bead Methods. Polycycl Aromat Compd 2020. [DOI: 10.1080/10406638.2020.1855218] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Hui Yu
- Guangxi Key Laboratory of Green Processing of Sugar Resources, College of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, Guangxi, China
| | - Junsheng Li
- Guangxi Key Laboratory of Green Processing of Sugar Resources, College of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, Guangxi, China
| | - Guoxia Huang
- Guangxi Key Laboratory of Green Processing of Sugar Resources, College of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, Guangxi, China
| | - Liujuan Yan
- Guangxi Key Laboratory of Green Processing of Sugar Resources, College of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, Guangxi, China
| | - Ji Ma
- Guangxi Key Laboratory of Green Processing of Sugar Resources, College of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, Guangxi, China
| |
Collapse
|
16
|
Rajeshwari K, Anantha Lakshmi P, Archana J, Sumakanth M. Ternary Cobalt(II), Nickel(II), and Copper(II) complexes containing metformin and ethylenediamine: Synthesis, characterization, thermal, in vitro DNA binding, in silico molecular docking, and in vivo antihyperglycemic studies. Appl Organomet Chem 2020. [DOI: 10.1002/aoc.6100] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- K. Rajeshwari
- Department of Chemistry Osmania University Hyderabad India
- Department of Chemistry University College for Women, Osmania University Hyderabad India
| | | | - J. Archana
- Department of Pharmacy RBVRR Women's College of Pharmacy Hyderabad India
| | - M. Sumakanth
- Department of Pharmacy RBVRR Women's College of Pharmacy Hyderabad India
| |
Collapse
|
17
|
Farag MM, Abd El Malak NS, Yehia SA, Ahmed MA. Sonocomplexation as an effective tool to enhance the antitumorigenic effect of metformin: Preparation, in vitro characterization, molecular dynamic simulation & MiaPaCa-2 cell line hypoxia evaluation. J Drug Deliv Sci Technol 2020; 59:101968. [DOI: 10.1016/j.jddst.2020.101968] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
|
18
|
Bayraktepe DE. A voltammetric study on drug-DNA interactions: Kinetic and thermodynamic aspects of the relations between the anticancer agent dasatinib and ds-DNA using a pencil lead graphite electrode. Microchem J 2020. [DOI: 10.1016/j.microc.2020.104946] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
|
19
|
El-Shwiniy WH, Abbass LM, Sadeek SA, Zordok WA. Synthesis, Structure, and Biological Activity of Some Transition Metal Complexes with the Mixed Ligand of Metformin and 1,4-Diacetylbenzene. RUSS J GEN CHEM+ 2020. [DOI: 10.1134/s1070363220030238] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
20
|
Castilho N, Gabriel P, Camargo TP, Neves A, Terenzi H. Targeting an Artificial Metal Nuclease to DNA by a Simple Chemical Modification and Its Drastic Effect on Catalysis. ACS Med Chem Lett 2020; 11:286-291. [PMID: 32184958 DOI: 10.1021/acsmedchemlett.9b00289] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2019] [Accepted: 08/12/2019] [Indexed: 12/17/2022] Open
Abstract
A novel metal complex was synthesized containing a purine derived ligand in order to increase its binding to DNA. We observed a huge increase in nuclease activity and, quite interestingly, an improvement on DNA sequence selectivity. A potential site of specific cleavage in the presence of a reductant in the reaction medium is suggested. We were able to synthesize a novel metal nuclease with improved activity on DNA, and with sequence specificity when exposed to a coreactant, this opens up new possibilities to create site specific and redox status modulated artificial nucleases.
Collapse
Affiliation(s)
- Nathalia Castilho
- Centro de Biologia Molecular Estrutural, Departamento de Bioquímica, Universidade Federal de Santa Catarina, 88040900 Florianópolis-SC, Brazil
| | - Philipe Gabriel
- Centro de Biologia Molecular Estrutural, Departamento de Bioquímica, Universidade Federal de Santa Catarina, 88040900 Florianópolis-SC, Brazil
| | - Tiago Pacheco Camargo
- Departamento de Química, Universidade Federal de Santa Catarina, 88040900 Florianópolis-SC, Brazil
| | - Ademir Neves
- Departamento de Química, Universidade Federal de Santa Catarina, 88040900 Florianópolis-SC, Brazil
| | - Hernán Terenzi
- Centro de Biologia Molecular Estrutural, Departamento de Bioquímica, Universidade Federal de Santa Catarina, 88040900 Florianópolis-SC, Brazil
| |
Collapse
|
21
|
Rajeshwari K, Vasantha P, Kumar B, Shekhar B, Lakshmi P. Water Soluble Nickel – metformin ternary complexes: Thermal, DNA binding and molecular docking studies. Appl Organomet Chem 2019. [DOI: 10.1002/aoc.5351] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- K. Rajeshwari
- Department of ChemistryUniversity College for Women, Osmania University, Koti Hyderabad Telangana State 500095 India
| | - P. Vasantha
- Department of ChemistryUniversity College for Women, Osmania University, Koti Hyderabad Telangana State 500095 India
| | - B.S. Kumar
- Department of ChemistryOsmania University Tarnaka Hyderabad Telangana State 500007 India
| | - B. Shekhar
- Department of ChemistryOsmania University Tarnaka Hyderabad Telangana State 500007 India
| | - P.V.A. Lakshmi
- Department of ChemistryOsmania University Tarnaka Hyderabad Telangana State 500007 India
| |
Collapse
|
22
|
Ryan AL, Fitzgerald MC, Ozsváth A, Twamley B, Buglyó P, Murphy BM, Griffith DM. Ni(II), Pd(II), and Pt(II) Complexes of the Hedgehog Pathway Inhibitor GANT61-D. Inorg Chem 2019; 58:16075-16086. [PMID: 31729870 DOI: 10.1021/acs.inorgchem.9b02632] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
GANT61-D is an important hedgehog pathway inhibitor and an interesting ligand candidate for metal coordination. The first examples of metal complexes of the potent hedgehog pathway inhibitor GANT61-D are described. The reaction of Ni(II), Pd(II), and Pt(II) precursors with the hedgehog pathway inhibitor GANT61-D gave [NiII(GANT61-D)(OH2)3(μ2-SO4)(μ3-SO4)] (1), [PdII(Cl)(GANT61-D)]Cl (2), [PtII(Cl)(GANT61-D)]Cl, and [PtII(CBDCA-2H)(GANT61-D)]. X-ray crystal structure analysis revealed that GANT61-D is a versatile N-donor ligand that can act as a bidentate ligand via the diaminopropane (DAP) N atoms or a tridentate ligand via the DAP N atoms and one dimethylaniline N atom. Protonation constants of the GANT61-D ligand in water and in a 60:40 (w/w) dimethyl sulfoxide-water solvent mixture were determined. Potentiometric and spectroscopic data on the NiII(GANT61-D) system indicate the formation of octahedral 1:1 species with medium stability in solution. 1 and 2 exhibited noteworthy in vitro cytotoxicity against medulloblastoma cancer cells.
Collapse
Affiliation(s)
- Aisling L Ryan
- Department of Chemistry , Royal College of Surgeons in Ireland , 123 St. Stephen's Green , Dublin D02 YN77 , Ireland
| | - Marie-Claire Fitzgerald
- Department of Physiology and Medical Physics , Royal College of Surgeons in Ireland , 31A York Street , Dublin D02 YN77 , Ireland.,National Children's Research Centre at the Children's Health Ireland at Crumlin , Dublin D12 N512 , Ireland
| | - András Ozsváth
- Department of Inorganic and Analytical Chemistry , University of Debrecen , Egyetem tér 1 , Debrecen H-4032 , Hungary
| | - Brendan Twamley
- School of Chemistry, Trinity College Dublin , University of Dublin , Dublin D02 PN40 , Ireland
| | - Péter Buglyó
- Department of Inorganic and Analytical Chemistry , University of Debrecen , Egyetem tér 1 , Debrecen H-4032 , Hungary
| | - Brona M Murphy
- Department of Physiology and Medical Physics , Royal College of Surgeons in Ireland , 31A York Street , Dublin D02 YN77 , Ireland.,National Children's Research Centre at the Children's Health Ireland at Crumlin , Dublin D12 N512 , Ireland
| | - Darren M Griffith
- Department of Chemistry , Royal College of Surgeons in Ireland , 123 St. Stephen's Green , Dublin D02 YN77 , Ireland
| |
Collapse
|
23
|
Aramesh-Boroujeni Z, Jahani S, Khorasani-Motlagh M, Kerman K, Aramesh N, Asadpour S, Noroozifar M. Experimental and theoretical investigations of Dy(III) complex with 2,2'-bipyridine ligand: DNA and BSA interactions and antimicrobial activity study. J Biomol Struct Dyn 2019; 38:4746-4763. [PMID: 31684852 DOI: 10.1080/07391102.2019.1689170] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
In this study, the interactions of a novel metal complex [Dy(bpy)2Cl3.OH2] (bpy is 2,2'-bipyridine) with fish salmon DNA (FS-DNA) and bovine serum albumin (BSA) were investigated by experimental and theoretical methods. All results suggested significant binding between the Dy(III) complex with FS-DNA and BSA. The binding constants (Kb), Stern-Volmer quenching constants (KSV) of Dy(III)-complex with FS-DNA and BSA at various temperatures as well as thermodynamic parameters using Van't Hoff equation were obtained. The experimental results from absorption, ionic strength, iodide ion quenching, ethidium bromide (EtBr) quenching studies and positive ΔH˚ and ΔS˚ suggested that hydrophobic groove-binding mode played a predominant role in the binding of Dy(III)-complex with FS-DNA. Indeed, the molecular docking results for DNA-binding were in agreement with experimental data. Besides, the results found from experimental and molecular modeling indicated that the Dy(III)-complex bound to BSA via Van der Waals interactions. Moreover, the results of competitive tests by phenylbutazone, ibuprofen, and hemin (as a site-I, site-II and site-III markers, respectively) considered that the site-III of BSA is the most possible binding site for Dy(III)-complex. In addition, Dy(III) complex was concurrently screened for its antimicrobial activities. The presented data provide a promising platform for the development of novel metal complexes that target nucleic acids and proteins with antimicrobial activity.Communicated by Ramaswamy H. Sarma.
Collapse
Affiliation(s)
- Zahra Aramesh-Boroujeni
- Department of Clinical Laboratory, AlZahra Hospital, Isfahan University of Medical Sciences, Isfahan, Iran.,Department of Chemistry, University of Sistan and Baluchestan, Zahedan, Iran
| | - Shohreh Jahani
- Nano Bioeletrochemistry Research Center, Bam University of Medical Sciences, Bam, Iran
| | | | - Kagan Kerman
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada
| | - Nahal Aramesh
- Department of Chemistry, Faculty of Sciences, Yasouj University, Yasouj, Iran
| | - Saeid Asadpour
- Department of Chemistry, Faculty of Sciences, Shahrekord University, Shahrekord, Iran
| | - Meissam Noroozifar
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada
| |
Collapse
|
24
|
Shahabadi N, Abbasi AR, Moshtkob A, Hadidi S. Design, synthesis and DNA interaction studies of new fluorescent platinum complex containing anti-HIV drug didanosine. J Biomol Struct Dyn 2019; 38:2837-2848. [DOI: 10.1080/07391102.2019.1658643] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Nahid Shahabadi
- Department of Inorganic Chemistry, Faculty of Chemistry, Razi University, Kermanshah, Iran
- Medical Biology Research Center (MBRC), Kermanshah University of Medical Sciences, Kermanshah, Iran
| | - Amir Reza Abbasi
- Department of Inorganic Chemistry, Faculty of Chemistry, Razi University, Kermanshah, Iran
- Institute of Nano Science and Nano Technology, Razi University, Kermanshah, Iran
| | - Ayda Moshtkob
- Department of Inorganic Chemistry, Faculty of Chemistry, Razi University, Kermanshah, Iran
| | - Saba Hadidi
- Department of Inorganic Chemistry, Faculty of Chemistry, Razi University, Kermanshah, Iran
- Medical Biology Research Center (MBRC), Kermanshah University of Medical Sciences, Kermanshah, Iran
| |
Collapse
|
25
|
Shekhar B, Vasantha P, Sathish Kumar B, Anantha Lakshmi P, Ravi Kumar V, Satyanarayana S. Chromium‐metformin ternary complexes: Thermal, DNA interaction and Docking studies. Appl Organomet Chem 2019. [DOI: 10.1002/aoc.5086] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- B. Shekhar
- Department of ChemistryOsmania University Tarnaka, Hyderabad Telangana State 500007 India
| | - P. Vasantha
- Department of ChemistryUniversity College for Women, Osmania University Koti, Hyderabad Telangana State 500095 India
| | - B. Sathish Kumar
- Department of ChemistryOsmania University Tarnaka, Hyderabad Telangana State 500007 India
| | - P.V. Anantha Lakshmi
- Department of ChemistryOsmania University Tarnaka, Hyderabad Telangana State 500007 India
| | - V. Ravi Kumar
- Department of ChemistryOsmania University Tarnaka, Hyderabad Telangana State 500007 India
| | - S. Satyanarayana
- Department of ChemistryOsmania University Tarnaka, Hyderabad Telangana State 500007 India
| |
Collapse
|
26
|
Zhang G, Zhou Z, Xu J, Liao Y, Hu X. Groove binding between ferulic acid and calf thymus DNA: spectroscopic methodology combined with chemometrics and molecular docking studies. J Biomol Struct Dyn 2019; 38:2029-2037. [PMID: 31157597 DOI: 10.1080/07391102.2019.1624194] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Ferulic acid (FA), a dietary phenolic acid compound, is proved to possess numerous biological activities. Hence, this study was devoted to explore the interaction between FA and calf thymus DNA (ctDNA) by UV - vis absorption, fluorescence, circular dichroism (CD) spectroscopy combined with multivariate curve resolution-alternating least-squares (MCR - ALS) and molecular docking studies. The concentration curves and the pure spectra of compositions (FA, ctDNA and FA - ctDNA complex) were obtained by MCR - ALS approach to verify and monitor the interaction of FA with ctDNA. The groove binding mode between FA and ctDNA was confirmed by the results of melting analysis, viscosity measurements, single-stranded DNA experiments, and competitive studies. The binding constant of FA - ctDNA complex was 4.87 × 104 L mol-1 at 298 K. The values of enthalpy (ΔH°) and entropy (ΔS°) changes in the interaction were -16.24 kJ mol-1 and 35.02 J mol-1 K-1, respectively, indicating that the main binding forces were hydrogen bonds and hydrophobic interactions. The result of CD spectra suggested that a decrease in right-handed helicity of ctDNA was induced by FA and the DNA conformational transition from the B-form to the A-form. The results of docking indicated that FA binding with ctDNA in the minor groove. These findings may be conducive to understand the interaction mechanism of FA with ctDNA and the pharmacological effects of FA. Communicated by Ramaswamy H. Sarma[Formula: see text].
Collapse
Affiliation(s)
- Guowen Zhang
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang, China
| | - Zhisheng Zhou
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang, China
| | - Jianjian Xu
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang, China
| | - Yijing Liao
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang, China
| | - Xing Hu
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang, China
| |
Collapse
|
27
|
Aramesh-Boroujeni Z, Jahani S, Khorasani-Motlagh M, Kerman K, Noroozifar M. Evaluation of DNA, BSA binding, DNA cleavage and antimicrobial activity of ytterbium(III) complex containing 2,2'-bipyridine ligand. J Biomol Struct Dyn 2019; 38:1711-1725. [DOI: 10.1080/07391102.2019.1617788] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Zahra Aramesh-Boroujeni
- Department of Clinical Laboratory, AlZahra Hospital, Isfahan University of Medical Sciences, Isfahan, Iran
- Department of Chemistry, University of Isfahan, Isfahan, Iran
| | - Shohreh Jahani
- Nano Bioeletrochemistry Research Center, Bam University of Medical Sciences, Bam, Iran
| | | | - Kagan Kerman
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada
| | - Meissam Noroozifar
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, Iran
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada
| |
Collapse
|
28
|
Lockwood TD. Biguanide is a modifiable pharmacophore for recruitment of endogenous Zn 2+ to inhibit cysteinyl cathepsins: review and implications. Biometals 2019; 32:575-93. [PMID: 31044334 DOI: 10.1007/s10534-019-00197-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2018] [Accepted: 04/13/2019] [Indexed: 01/28/2023]
Abstract
Excessive activities of cysteinyl cathepsins (CysCts) contribute to the progress of many diseases; however, therapeutic inhibition has been problematic. Zn2+ is a natural inhibitor of proteases with CysHis dyads or CysHis(Xaa) triads. Biguanide forms bidentate metal complexes through the two imino nitrogens. Here, it is discussed that phenformin (phenylethyl biguanide) is a model for recruitment of endogenous Zn2+ to inhibit CysHis/CysHis(X) peptidolysis. Phenformin is a Zn2+-interactive, anti-proteolytic agent in bioassay of living tissue. Benzoyl-L-arginine amide (BAA) is a classical substrate of papain-like proteases; the amide bond is scissile. In this review, the structures of BAA and the phenformin-Zn2+ complex were compared in silico. Their chemistry and dimensions are discussed in light of the active sites of papain-like proteases. The phenyl moieties of both structures bind to the "S2" substrate-binding site that is typical of many proteases. When the phenyl moiety of BAA binds to S2, then the scissile amide bond is directed to the position of the thiolate-imidazolium ion pair, and is then hydrolyzed. However, when the phenyl moiety of phenformin binds to S2, then the coordinated Zn2+ is directed to the identical position; and catalysis is inhibited. Phenformin stabilizes a "Zn2+ sandwich" between the drug and protease active site. Hundreds of biguanide derivatives have been synthesized at the 1 and 5 nitrogen positions; many more are conceivable. Various substituent moieties can register with various arrays of substrate-binding sites so as to align coordinated Zn2+ with catalytic partners of diverse proteases. Biguanide is identified here as a modifiable pharmacophore for synthesis of therapeutic CysCt inhibitors with a wide range of potencies and specificities. Phenformin-Zn2+ Complex.
Collapse
|
29
|
Asadi Z, Mandegani Z, Asadi M, Pakiari AH, Salarhaji M, Manassir M, Karbalaei-Heidari HR, Rastegari B, Sedaghat M. Substituted effect on some water-soluble Mn(II) salen complexes: DNA binding, cytotoxicity, molecular docking, DFT studies and theoretical IR & UV studies. Spectrochim Acta A Mol Biomol Spectrosc 2019; 206:278-294. [PMID: 30121473 DOI: 10.1016/j.saa.2018.08.020] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2018] [Revised: 08/05/2018] [Accepted: 08/11/2018] [Indexed: 06/08/2023]
Abstract
Based on the importance of central metal complexes to interact with DNA, in this research focused on synthesis of some new water soluble Mn(II) complexes 1-4 which modified substituted in ligand at the same position with N, Me, H, and Cl. These complexes were isolated and characterized by elemental analyses, FT-IR, electrospray ionization mass spectrometry (ESI-MS) and UV-vis spectroscopy. DNA binding studies had been studied by using circular dichroism (CD) spectroscopy, UV-vis absorption spectroscopy, cyclic voltammetry (CV), viscosity measurements, emission spectroscopy and gel electrophoresis which proposed the metal buildings go about as effective DNA binders were studied in the presence of Fish-DNA (FS-DNA) which showed the highest binding affinity to DNA with hydrophobic and electron donating substituent. Cell toxicity assays against two human leukemia (Jurkat) and breast cancer (MCF-7) cell lines showed that the complex 3 exhibited a remarkable effects equal to a famous anticancer drug, cisplatin that high cytotoxic activity strongly depend on the hydrophobic substituted ligand. In the theoretical part, density functional theory (DFT) was performed to optimize the geometry of complexes through IR and UV spectra of the complexes that ligand substitution did not affect the geometry and theoretical IR and UV spectra showed good resemblance to the experimental data. The docking studies calculated the lowest-energy between complexes and DNA with the minor grooves mode.
Collapse
Affiliation(s)
- Zahra Asadi
- Department of Chemistry, College of Sciences, Shiraz University, Shiraz 71454, Iran.
| | - Zeinab Mandegani
- Department of Chemistry, College of Sciences, Shiraz University, Shiraz 71454, Iran
| | - Mozaffar Asadi
- Department of Chemistry, College of Sciences, Shiraz University, Shiraz 71454, Iran
| | - Ali Heidar Pakiari
- Department of Chemistry, College of Sciences, Shiraz University, Shiraz 71454, Iran
| | - Maryam Salarhaji
- Department of Chemistry, College of Sciences, Shiraz University, Shiraz 71454, Iran
| | - Mohamad Manassir
- Department of Chemistry, College of Sciences, Shiraz University, Shiraz 71454, Iran
| | - Hamid Reza Karbalaei-Heidari
- Molecular Biotechnology Laboratory, Department of Biology, Faculty of Sciences, Shiraz University, Shiraz 71454, Iran
| | - Banafsheh Rastegari
- Molecular Biotechnology Laboratory, Department of Biology, Faculty of Sciences, Shiraz University, Shiraz 71454, Iran
| | - Moslem Sedaghat
- Department of Chemistry, College of Sciences, Shiraz University, Shiraz 71454, Iran
| |
Collapse
|
30
|
P V, B SK, B S, P V AL. Copper-metformin ternary complexes: Thermal, photochemosensitivity and molecular docking studies. Mater Sci Eng C Mater Biol Appl 2018; 90:621-633. [PMID: 29853132 DOI: 10.1016/j.msec.2018.04.052] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2017] [Revised: 04/07/2018] [Accepted: 04/17/2018] [Indexed: 11/24/2022]
Abstract
The copper(II) complexes [Cu(Cl)2(met)(o-phen)] (1), [Cu(Cl)2(met)(en)] (2) and [Cu(Cl)2(met)(opda)] (3) (met = metformin, o-phen = ortho-phenanthroline, en = ethylenediamine, opda = ortho-phenylenediamine) were synthesized and characterized by LC-MS, elemental analysis, molar conductance, thermal analysis, infrared spectra, magnetic moment, electronic spectra and XRD studies. The metal center was found in an octahedral geometry. The activation thermodynamic properties were calculated using Coats-Redfern method. Thermal decomposition processes of complexes 1, 2, 3 are non-spontaneous, i.e., the complexes are thermally stable. The positive value of Gibbs free energy of decomposition (ΔG⁎) for the Cu(II) complexes is non-spontaneous processes. UV-Visible absorption, fluorescence, and viscosity measurements have been conducted to assess the interaction of the complexes with CT DNA. The complexes showed absorption hyperchromism in its UV-Vis spectrum with DNA. The binding constants Kb from UV-Vis absorption studies were 4.6 × 105, 1.48 × 105, 2.09 × 105 M-1 for 1, 2, 3 respectively and Stern-Volmer quenching constants (Ksq) from fluorescence studies were 0.636, 0.293, 0.487 for 1, 2, 3 respectively. Finally, viscosity measurements revealed that the binding of the complexes with CT-DNA could be surface binding, mainly due to groove binding. The activity of complexes towards DNA cleavage decreases in the order of 1 > 3 > 2. The complexes were docked in to B-DNA sequence, 5'(D*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3' retrieved from protein data bank (PDB ID: 423D), using Discovery Studio 2.1 software.
Collapse
Affiliation(s)
- Vasantha P
- Department of Chemistry, University College for Women, Osmania University, Koti, Hyderabad, Telangana State 500095, India
| | - Sathish Kumar B
- Department of Chemistry, University College for Women, Osmania University, Koti, Hyderabad, Telangana State 500095, India; Department of Chemistry, Osmania University, Tarnaka, Hyderabad, Telangana State 500007, India
| | - Shekhar B
- Department of Chemistry, University College for Women, Osmania University, Koti, Hyderabad, Telangana State 500095, India; Department of Chemistry, Osmania University, Tarnaka, Hyderabad, Telangana State 500007, India
| | - Anantha Lakshmi P V
- Department of Chemistry, Osmania University, Tarnaka, Hyderabad, Telangana State 500007, India; Department of Chemistry, University College of Technology, Osmania University, Tarnaka, Hyderabad, Telangana State 500007, India.
| |
Collapse
|
31
|
Sohrabi T, Hosseinzadeh M, Beigoli S, Saberi MR, Chamani J. Probing the binding of lomefloxacin to a calf thymus DNA-histone H1 complex by multi-spectroscopic and molecular modeling techniques. J Mol Liq 2018; 256:127-38. [DOI: 10.1016/j.molliq.2018.02.031] [Citation(s) in RCA: 88] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
|
32
|
Pawar S, Tandel R, Kunabevu R, Jaldappagari S. Spectroscopic and computational approaches to unravel the mode of binding between a isoflavone, biochanin-A and calf thymus DNA. J Biomol Struct Dyn 2018; 37:846-856. [DOI: 10.1080/07391102.2018.1442748] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Suma Pawar
- Department of Chemistry, Karnatak University, Dharwad, 580 003, India
| | - Ranjita Tandel
- Department of Chemistry, Karnatak University, Dharwad, 580 003, India
| | - Ramesh Kunabevu
- Department of Chemistry, SJM College, Chitradurga, 577 501, India
| | | |
Collapse
|
33
|
Shahabadi N, Fatahi S, Maghsudi M. Synthesis of a new Pt(II) complex containing valganciclovir drug and calf-thymus DNA interaction study using multispectroscopic methods. J COORD CHEM 2018. [DOI: 10.1080/00958972.2018.1433828] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Nahid Shahabadi
- Faculty of Chemistry, Department of Inorganic Chemistry, Razi University, Kermanshah, Iran
- Medical Biology Research Center (MBRC), Kermanshah University of Medical Sciences, Kermanshah, Iran
| | - Somaye Fatahi
- Faculty of Chemistry, Department of Inorganic Chemistry, Razi University, Kermanshah, Iran
| | - Maryam Maghsudi
- Faculty of Chemistry, Department of Inorganic Chemistry, Razi University, Kermanshah, Iran
- Medical Biology Research Center (MBRC), Kermanshah University of Medical Sciences, Kermanshah, Iran
| |
Collapse
|
34
|
Shahabadi N, Shiri F, Norouzibazaz M, Falah A. Disquisition on the interaction of ibuprofen-Zn(II) complex with calf thymus DNA by spectroscopic techniques and the use of Hoechst 33258 and Methylene blue dyes as spectral probes. Nucleosides Nucleotides Nucleic Acids 2018; 37:125-146. [PMID: 29461923 DOI: 10.1080/15257770.2017.1400048] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
The interaction between ibuprofen-Zn(II) complex and calf thymus DNA in physiological buffer (pH 7.4) was studied with the use of Hoechst 33258 and methylene blue dyes as spectral probes by multi-spectroscopic techniques, and viscosity measurements. It was found that ibuprofen-Zn(II) complex molecules could bind with DNA via groove binding mode as evidenced by: i- DNA binding constant (Kb = (1.00 ± 0.2) × 104 M-1) from Spectrophotometric studies of the interaction of ibuprofen-Zn(II) complex with DNA is comparable to groove binding drugs. ii- Absorption Spectra of Competitive interaction of ibuprofen-Zn(II) complex and Hoechst 33258 with DNA exhibited the reverse process, The results suggested that interaction of the ibuprofen-Zn(II) complex with calf thymus DNA, is similar to Hoechst 33258 interaction with calf thymus DNA (This was verified by the following fluorescence study). iii- Competitive fluorimetric studies with Hoechst 33258 have shown that ibuprofen-Zn(II) complex exhibit the ability of this complex to displace with DNA-bounded Hoechst 33258, indicating that it binds to DNA in strong competition with Hoechst 33258 for the groove binding. iv- There is no significantly change in the fluorescence intensity of the MB-DNA system upon adding the ibuprofen-Zn(II) complex, indicate that MB molecules are not released from the DNA helix after addition of the ibuprofen-Zn(II) complex and are indicative of a non-intercalative mode of binding. v- Small changes in DNA viscosity in the presence of ibuprofen-Zn(II) complex, indicating weak link to DNA, which is consistent with DNA groove binding. As well as, induced CD spectral changes, and the docking results revealed that groove mechanism is followed by ibuprofen-Zn(II) complex to bind with DNA.
Collapse
Affiliation(s)
- Nahid Shahabadi
- Inorganic Chemistry Department, Faculty of Chemistry, Razi University, Kermanshah, Iran.,Medical Biology Research Center (EBRC) Kermanshah University of Medical Sciences, Kermanshah, Iran
| | - Farshad Shiri
- Inorganic Chemistry Department, Faculty of Chemistry, Razi University, Kermanshah, Iran.,Inorganic and Computational Chemistry, Department of Science, Tarbiat Modares University, Tehran, Iran.,Medical Biology Research Center (MBRC), Kermanshah University of Medical Sciences, Kermanshah, Iran
| | | | - Aliyar Falah
- Medical Biology Research Center, Arak University of Medical Sciences, Arak, Iran.,Department of Physical Education, Islamic Azad University, Arak Branch, Arak, Iran
| |
Collapse
|
35
|
Mondal S, Samajdar RN, Mukherjee S, Bhattacharyya AJ, Bagchi B. Unique Features of Metformin: A Combined Experimental, Theoretical, and Simulation Study of Its Structure, Dynamics, and Interaction Energetics with DNA Grooves. J Phys Chem B 2018; 122:2227-2242. [DOI: 10.1021/acs.jpcb.7b11928] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Sayantan Mondal
- Solid State and Structural
Chemistry Unit, Indian Institute of Science, Bangalore 560012, India
| | - Rudra N. Samajdar
- Solid State and Structural
Chemistry Unit, Indian Institute of Science, Bangalore 560012, India
| | - Saumyak Mukherjee
- Solid State and Structural
Chemistry Unit, Indian Institute of Science, Bangalore 560012, India
| | - Aninda J. Bhattacharyya
- Solid State and Structural
Chemistry Unit, Indian Institute of Science, Bangalore 560012, India
| | - Biman Bagchi
- Solid State and Structural
Chemistry Unit, Indian Institute of Science, Bangalore 560012, India
| |
Collapse
|
36
|
Affiliation(s)
- B. Shekhar
- Department of Chemistry; University College for Women, Osmania University; Koti Hyderabad Telangana State 500095 India
- Department of Chemistry; Osmania University; Tarnaka Hyderabad Telangana State 500007 India
| | - P. Vasantha
- Department of Chemistry; University College for Women, Osmania University; Koti Hyderabad Telangana State 500095 India
| | - B. Sathish Kumar
- Department of Chemistry; University College for Women, Osmania University; Koti Hyderabad Telangana State 500095 India
- Department of Chemistry; Osmania University; Tarnaka Hyderabad Telangana State 500007 India
| | - P.V. Anantha Lakshmi
- Department of Chemistry; Osmania University; Tarnaka Hyderabad Telangana State 500007 India
- Department of Chemistry; University College of Technology, Osmania University; Tarnaka Hyderabad Telangana State 500007 India
| |
Collapse
|
37
|
Kumbhakonam S, Vellaisamy K, Saroj S, Venkatesan N, D. K, Kannoth Manheri M. Serine- and threonine-derived diamine equivalents for site-specific incorporation of platinum centers in peptides, and the anticancer potential of these conjugates. NEW J CHEM 2018. [DOI: 10.1039/c7nj03999a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A modular strategy that gives access to a library of peptide–Pt conjugates and their anticancer potential is presented.
Collapse
Affiliation(s)
| | | | - Soumya Saroj
- Department of Chemistry
- Indian Institute of Technology Madras
- Chennai
- India
| | - Nalini Venkatesan
- Department of Biotechnology
- Indian Institute of Technology Madras
- Chennai
- India
| | - Karunagaran D.
- Department of Biotechnology
- Indian Institute of Technology Madras
- Chennai
- India
| | | |
Collapse
|
38
|
Utthra PP, Kumaravel G, Raman N. Screening the efficient biological prospects of triazole allied mixed ligand metal complexes. J Mol Struct 2017; 1150:374-82. [DOI: 10.1016/j.molstruc.2017.09.002] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
|
39
|
Vasantha P, Sathish Kumar B, Shekhar B, Anantha Lakshmi P. Cobalt(II)–metformin complexes containing α‐diimine/α‐diamine as auxiliary ligand: DNA binding properties. Appl Organomet Chem 2017. [DOI: 10.1002/aoc.4074] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- P. Vasantha
- Department of ChemistryUniversity College for Women, Osmania University Koti, Hyderabad Telangana State 500095 India
| | - B. Sathish Kumar
- Department of ChemistryUniversity College for Women, Osmania University Koti, Hyderabad Telangana State 500095 India
- Department of ChemistryOsmania University Tarnaka, Hyderabad Telangana State 500007 India
| | - B. Shekhar
- Department of ChemistryUniversity College for Women, Osmania University Koti, Hyderabad Telangana State 500095 India
| | - P.V. Anantha Lakshmi
- Department of ChemistryUniversity College for Women, Osmania University Koti, Hyderabad Telangana State 500095 India
- Department of ChemistryOsmania University Tarnaka, Hyderabad Telangana State 500007 India
| |
Collapse
|
40
|
Zulkarnain, Miyan L, Ahmad A, Fazle Alam M, Younus H. Synthesis, single-crystal, DNA interaction, spectrophotometric and spectroscopic characterization of the hydrogen-bonded charge transfer complex of 2-aminopyrimidine with π-acceptor chloranilic acid at different temperature in acetonitrile. Journal of Photochemistry and Photobiology B: Biology 2017; 174:195-208. [DOI: 10.1016/j.jphotobiol.2017.07.002] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2017] [Revised: 06/23/2017] [Accepted: 07/03/2017] [Indexed: 01/01/2023]
|
41
|
Ma L, Wang J, Zhang Y. Probing the Characterization of the Interaction of Aflatoxins B1 and G1 with Calf Thymus DNA In Vitro. Toxins (Basel) 2017; 9:E209. [PMID: 28671585 PMCID: PMC5535156 DOI: 10.3390/toxins9070209] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2017] [Revised: 06/20/2017] [Accepted: 06/28/2017] [Indexed: 11/16/2022] Open
Abstract
The binding characterization of aflatoxins with calf thymus DNA (ctDNA) under physiological conditions was investigated. Multispectroscopic techniques, ctDNA melting, viscosity measurements, and molecular docking techniques were employed to elucidate the binding mechanism of the aflatoxins with DNA. The fluorescence results indicated that both aflatoxin B1 (AFB1) and aflatoxin G1 (AFG1) bound to the ctDNA, forming complexes through hydrogen bonding. The binding constants of AFB1 and AFG1 with ctDNA reached up to 10³ L·mol-1 and 10⁴ L·mol-1, respectively, and AFG1 exhibited a higher binding propensity than that of AFB1. Furthermore, both AFB1 and AFG1 bound to the ctDNA through groove binding, as evidenced by the results of the spectroscopic, iodide quenching effect, viscosity, and ctDNA melting measurements. Changes in the circular dichroism signal manifested that both AFB1 and AFG1 induced an increase in the right-handed helicity, but only minimally influenced the base stacking of the DNA. A molecular docking study of the aflatoxin's binding with the DNA revealed a groove binding mode, which was driven mainly by hydrogen bonding. This study of aflatoxin-ctDNA interaction may provide novel insights into the toxicological effect of the mycotoxins.
Collapse
Affiliation(s)
- Liang Ma
- College of Food Science, Southwest University, Beibei District, Chongqing 400715, China.
| | - Jiaman Wang
- College of Food Science, Southwest University, Beibei District, Chongqing 400715, China.
| | - Yuhao Zhang
- College of Food Science, Southwest University, Beibei District, Chongqing 400715, China.
| |
Collapse
|
42
|
Moradi Z, Khorasani-Motlagh M, Rezvani AR, Noroozifar M. Evaluation of DNA, BSA binding, and antimicrobial activity of new synthesized neodymium complex containing 29-dimethyl 110-phenanthroline. J Biomol Struct Dyn 2017; 36:779-794. [DOI: 10.1080/07391102.2017.1288170] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Zohreh Moradi
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, P.O. Box 98155-147, Iran
| | | | - Ali Reza Rezvani
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, P.O. Box 98155-147, Iran
| | - Meissam Noroozifar
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, P.O. Box 98155-147, Iran
| |
Collapse
|
43
|
Xia K, Zhang G, Gong D. Deciphering the intercalative binding modes of benzoyl peroxide with calf thymus DNA. LUMINESCENCE 2017; 32:988-998. [PMID: 28116811 DOI: 10.1002/bio.3281] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2016] [Revised: 12/13/2016] [Accepted: 12/19/2016] [Indexed: 12/23/2022]
Abstract
The binding of benzoyl peroxide (BPO), a flour brightener, with calf thymus DNA (ctDNA) was predicted by molecular simulation, and this were confirmed using multi-spectroscopic techniques and a chemometrics algorithm. The molecular docking result showed that BPO could insert into the base pairs of ctDNA, and the adenine bases were the preferential binding sites which were validated by the analysis of Fourier transform infrared spectra. The mode of binding of BPO with ctDNA was an intercalation as supported by the results from ctDNA melting and viscosity measurements, iodide quenching effects and competitive binding investigations. The circular dichroism and DNA cleavage assays indicated that BPO induced a conformational change from B-like DNA structure towards to A-like form, but did not lead to significant damage in the DNA. The complexation was driven mainly by hydrogen bonds and hydrophobic interactions. Moreover, the ultraviolet-visible (UV-vis) spectroscopic data matrix was resolved by a multivariate curve resolution-alternating least-squares algorithm. The equilibrium concentration profiles for the components (BPO, ctDNA and BPO-ctDNA complex) were extracted from the highly overlapping composite response to quantitatively monitor the BPO-ctDNA interaction. This study has provided insights into the mechanism of the interaction of BPO with ctDNA and potential hazards of the food additive.
Collapse
Affiliation(s)
- Kaixin Xia
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang, China
| | - Guowen Zhang
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang, China
| | - Deming Gong
- School of Biological Sciences, The University of Auckland, Auckland, New Zealand
| |
Collapse
|
44
|
Silva GADS, Amorim AL, Souza BD, Gabriel P, Terenzi H, Nordlander E, Neves A, Peralta RA. Synthesis and characterization of FeIII(μ-OH)ZnII complexes: effects of a second coordination sphere and increase in the chelate ring size on the hydrolysis of a phosphate diester and DNA. Dalton Trans 2017; 46:11380-11394. [DOI: 10.1039/c7dt02035j] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Effects of a second coordination sphere and of the chelate ring size in FeIII(μ-OH)ZnII complexes properties and catalysis.
Collapse
Affiliation(s)
| | - André Luiz Amorim
- Departamento de Química
- Universidade Federal de Santa Catarina
- 88040-900 Florianópolis
- Brazil
| | - Bernardo de Souza
- Departamento de Química
- Universidade Federal de Santa Catarina
- 88040-900 Florianópolis
- Brazil
| | - Philipe Gabriel
- Centro de Biologia Molecular Estrutural
- Departamento de Bioquímica
- Universidade Federal de Santa Catarina
- Florianópolis
- Brazil
| | - Hernán Terenzi
- Centro de Biologia Molecular Estrutural
- Departamento de Bioquímica
- Universidade Federal de Santa Catarina
- Florianópolis
- Brazil
| | - Ebbe Nordlander
- Inorganic Chemistry Research Group
- Chemical Physics
- Center for Chemistry and Chemical Engineering
- Lund University
- SE-221 00 Lund
| | - Ademir Neves
- Departamento de Química
- Universidade Federal de Santa Catarina
- 88040-900 Florianópolis
- Brazil
| | - Rosely A. Peralta
- Departamento de Química
- Universidade Federal de Santa Catarina
- 88040-900 Florianópolis
- Brazil
| |
Collapse
|
45
|
Pages BJ, Sakoff J, Gilbert J, Rodger A, Chmel NP, Jones NC, Kelly SM, Ang DL, Aldrich-Wright JR. Multifaceted Studies of the DNA Interactions and In Vitro Cytotoxicity of Anticancer Polyaromatic Platinum(II) Complexes. Chemistry 2016; 22:8943-54. [DOI: 10.1002/chem.201601221] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2016] [Indexed: 01/01/2023]
Affiliation(s)
- Benjamin J. Pages
- Nanoscale Organisation and Dynamics Group; Western Sydney University; Campbelltown NSW 2560 Australia
| | | | | | - Alison Rodger
- Department of Chemistry; University of Warwick; Coventry West Midlands CV47AL UK
| | - Nikola P. Chmel
- Department of Chemistry; University of Warwick; Coventry West Midlands CV47AL UK
| | - Nykola C. Jones
- ISA, Department of Physics and Astronomy; Aarhus University; Aarhus 8000 Denmark
| | - Sharon M. Kelly
- Institute of Molecular, Cell and Systems Biology; College of Medical, Veterinary and Life Sciences; University of Glasgow; Glasgow G12 8QQ UK
| | - Dale L. Ang
- Nanoscale Organisation and Dynamics Group; Western Sydney University; Campbelltown NSW 2560 Australia
| | - Janice R. Aldrich-Wright
- Nanoscale Organisation and Dynamics Group; Western Sydney University; Campbelltown NSW 2560 Australia
| |
Collapse
|
46
|
Bortolotto T, Silva-Caldeira PP, Pich CT, Pereira-Maia EC, Terenzi H. Tunable DNA cleavage activity promoted by copper(ii) ternary complexes with N-donor heterocyclic ligands. Chem Commun (Camb) 2016; 52:7130-3. [PMID: 27168172 DOI: 10.1039/c6cc03142k] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Several small molecules have the capacity to cleave DNA promptly at high yields, even under mild conditions. Usually, this activity has no constraints, occurring without external or user control. Here, we demonstrate that UV-light exposure can greatly enhance the DNA cleavage activity promoted by four ternary copper(ii) complexes. A remarkable photocontrolled activity was achieved, which may be interesting for chemical and biochemical applications.
Collapse
Affiliation(s)
- T Bortolotto
- Centro de Biologia Molecular Estrutural, Departamento de Bioquímica, Universidade Federal de Santa Catarina, 88040-970, Florianópolis-SC, Brazil.
| | | | | | | | | |
Collapse
|
47
|
Tao M, Zhang G, Pan J, Xiong C. Deciphering the groove binding modes of tau-fluvalinate and flumethrin with calf thymus DNA. Spectrochim Acta A Mol Biomol Spectrosc 2016; 155:28-37. [PMID: 26571092 DOI: 10.1016/j.saa.2015.11.006] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2015] [Revised: 10/30/2015] [Accepted: 11/03/2015] [Indexed: 06/05/2023]
Abstract
Tau-fluvalinate (TFL) and flumethrin (FL), widely used in agriculture and a class of synthetic pyrethroid pesticides with a similar structure, may cause a potential security risk. Herein, the modes of binding in vitro of TFL and FL with calf thymus DNA (ctDNA) were characterized by fluorescence, UV-vis absorption, circular dichroism (CD) and Fourier transform infrared (FT-IR) spectroscopy with the aid of viscosity measurements, melting analyses and molecular docking studies. The fluorescence titration indicated that both TFL and FL bound to ctDNA forming complexes through hydrogen bonding and van der Waals forces. The binding constants of TFL and FL with ctDNA were in the range of 10(4)Lmol(-1), and FL exhibited a higher binding propensity than TFL. The iodide quenching effect, single/double-stranded DNA effects, and ctDNA melting and viscosity measurements demonstrated that the binding of both TFL and FL to ctDNA was groove mode. The FT-IR analyses suggested the A-T region of the minor groove of ctDNA as the preferential binding for TFL and FL, which was confirmed by the displacement assays with Hoechst 33258 probe, and the molecular docking visualized the specific binding. The changes in CD spectra indicated that both FL and TFL induced the perturbation on the base stacking and helicity of B-DNA, but the disturbance caused by FL was more obvious. Gel electrophoresis analyses indicated that both TFL and FL did not cause significant DNA cleavage. This study provides novel insights into the binding properties of TFL/FL with ctDNA and its toxic mechanisms.
Collapse
Affiliation(s)
- Mo Tao
- State Key Laboratory of Food Science and Technology, Nanchang University, 235, Nanjing East Road, Nanchang 330047, China
| | - Guowen Zhang
- State Key Laboratory of Food Science and Technology, Nanchang University, 235, Nanjing East Road, Nanchang 330047, China.
| | - Junhui Pan
- State Key Laboratory of Food Science and Technology, Nanchang University, 235, Nanjing East Road, Nanchang 330047, China
| | - Chunhong Xiong
- State Key Laboratory of Food Science and Technology, Nanchang University, 235, Nanjing East Road, Nanchang 330047, China
| |
Collapse
|
48
|
Hernández B, Pflüger F, Kruglik SG, Cohen R, Ghomi M. Protonation–deprotonation and structural dynamics of antidiabetic drug metformin. J Pharm Biomed Anal 2015; 114:42-8. [DOI: 10.1016/j.jpba.2015.04.041] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2015] [Revised: 04/27/2015] [Accepted: 04/30/2015] [Indexed: 10/23/2022]
|
49
|
Frik M, Fernández-Gallardo J, Gonzalo O, Mangas-Sanjuan V, González-Alvarez M, Serrano del Valle A, Hu C, González-Alvarez I, Bermejo M, Marzo I, Contel M. Cyclometalated Iminophosphorane Gold(III) and Platinum(II) Complexes. A Highly Permeable Cationic Platinum(II) Compound with Promising Anticancer Properties. J Med Chem 2015; 58:5825-41. [PMID: 26147404 PMCID: PMC4538566 DOI: 10.1021/acs.jmedchem.5b00427] [Citation(s) in RCA: 76] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
![]()
New
organometallic gold(III) and platinum(II) complexes containing
iminophosphorane ligands are described. Most of them are more cytotoxic
to a number of human cancer cell lines than cisplatin. Cationic Pt(II)
derivatives 4 and 5, which differ only in
the anion, Hg2Cl62– or PF6– respectively, display almost identical
IC50 values in the sub-micromolar range (25–335-fold
more active than cisplatin on these cell lines). The gold compounds
induced mainly caspase-independent cell death, as previously reported
for related cycloaurated compounds containing IM ligands. Cycloplatinated
compounds 3, 4, and 5 can also
activate alternative caspase-independent mechanisms of death. However,
at short incubation times cell death seems to be mainly caspase dependent,
suggesting that the main mechanism of cell death for these compounds
is apoptosis. Mercury-free compound 5 does not interact
with plasmid (pBR322) DNA or with calf thymus DNA. Permeability studies
of 5 by two different assays, in vitro Caco-2 monolayers and a rat perfusion model, have revealed a high
permeability profile for this compound (comparable to that of metoprolol
or caffeine) and an estimated oral fraction absorbed of 100%, which
potentially makes it a good candidate for oral administration.
Collapse
Affiliation(s)
- Malgorzata Frik
- †Department of Chemistry, Brooklyn College, The City University of New York, Brooklyn, New York 11210, United States.,‡Chemistry Ph.D. Program, The Graduate Center, The City University of New York, 365 Fifth Avenue, New York, New York 10016, United States
| | - Jacob Fernández-Gallardo
- †Department of Chemistry, Brooklyn College, The City University of New York, Brooklyn, New York 11210, United States
| | - Oscar Gonzalo
- §Departamento de Bioquímica y Biología Molecular y Celular, Facultad de Ciencias, Universidad de Zaragoza, 50009 Zaragoza, Spain
| | - Víctor Mangas-Sanjuan
- ∥Departamento de Ingeniería, Área Farmacia y Tecnología Farmacéutica, Universidad Miguel Hernández, 03550 San Juan, Alicante, Spain
| | - Marta González-Alvarez
- ∥Departamento de Ingeniería, Área Farmacia y Tecnología Farmacéutica, Universidad Miguel Hernández, 03550 San Juan, Alicante, Spain
| | - Alfonso Serrano del Valle
- §Departamento de Bioquímica y Biología Molecular y Celular, Facultad de Ciencias, Universidad de Zaragoza, 50009 Zaragoza, Spain
| | - Chunhua Hu
- ⊥Chemistry Department, New York University, New York, New York 10003, United States
| | - Isabel González-Alvarez
- ∥Departamento de Ingeniería, Área Farmacia y Tecnología Farmacéutica, Universidad Miguel Hernández, 03550 San Juan, Alicante, Spain
| | - Marival Bermejo
- ∥Departamento de Ingeniería, Área Farmacia y Tecnología Farmacéutica, Universidad Miguel Hernández, 03550 San Juan, Alicante, Spain
| | - Isabel Marzo
- §Departamento de Bioquímica y Biología Molecular y Celular, Facultad de Ciencias, Universidad de Zaragoza, 50009 Zaragoza, Spain
| | - María Contel
- †Department of Chemistry, Brooklyn College, The City University of New York, Brooklyn, New York 11210, United States.,‡Chemistry Ph.D. Program, The Graduate Center, The City University of New York, 365 Fifth Avenue, New York, New York 10016, United States.,#Biology Ph.D. Program, The Graduate Center, The City University of New York, 365 Fifth Avenue, New York, New York 10016, United States
| |
Collapse
|
50
|
Guo L, Zhang Z, Qiao H, Liu M, Shen M, Yuan T, Chen J, Dionysiou DD. Spectroscopic study on interaction between three cationic surfactants with different alkyl chain lengths and DNA. Spectrochim Acta A Mol Biomol Spectrosc 2015; 151:237-246. [PMID: 26142657 DOI: 10.1016/j.saa.2015.06.114] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2015] [Revised: 06/24/2015] [Accepted: 06/25/2015] [Indexed: 06/04/2023]
Abstract
In this study, the interaction between cationic surfactants with different alkyl chain lengths, such as hexyltrimethyl ammonium bromide (HTAB), dodecyltrimethyl ammonium bromide (DTAB) and cetyltrimethyl ammonium bromide (CTAB), and DNA was investigated by UV-vis spectroscopy, fluorescence spectroscopy and viscosity techniques. The results showed that these three cationic surfactants with different hydrocarbon chain lengths could all interact with DNA. Their binding modes were estimated and their interaction strength was compared. In addition, the effects of the surfactant, NaCl and phosphate ion concentrations on the interaction were reviewed. It is wished that this work would provide some valuable references to investigate the influence of cationic surfactants with different alkyl chain lengths on DNA.
Collapse
Affiliation(s)
- Lili Guo
- School of Environmental Science, Liaoning University, Shenyang 110036, China
| | - Zhaohong Zhang
- School of Environmental Science, Liaoning University, Shenyang 110036, China.
| | - Heng Qiao
- School of Environmental Science, Liaoning University, Shenyang 110036, China
| | - Miao Liu
- Department of Endocrinology, The First Affiliated Hospital of China Medical University, Shenyang 110001, China
| | - Manli Shen
- School of Environmental Science, Liaoning University, Shenyang 110036, China
| | - Tianxin Yuan
- School of Environmental Science, Liaoning University, Shenyang 110036, China
| | - Jing Chen
- School of Environmental Science, Liaoning University, Shenyang 110036, China
| | - Dionysios D Dionysiou
- Environmental Engineering and Science Program, University of Cincinnati, Cincinnati, OH 45221-0012, USA.
| |
Collapse
|