1
|
Giana HE, Souza LO, Silveira L. Comparison of different Raman spectrometer models in the quantification of blood serum analytes. Lasers Med Sci 2025; 40:143. [PMID: 40095085 DOI: 10.1007/s10103-025-04413-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2024] [Accepted: 03/12/2025] [Indexed: 03/19/2025]
Abstract
The analytical performance of three commercial Raman spectrometers in determining the concentrations of analytes associated with diagnosing metabolic, cardiovascular, and renal disorders has been compared. Two portable and one benchtop spectrometers were tested to predict the serum concentrations of triglycerides (TRI), cholesterol (COL), high-density cholesterol, creatinine, urea, and glucose in 193 serum samples using partial least squares (PLS) regression and PLS discriminant analysis, the latter for classifying samples as either altered or within reference values. Strong correlations (r > 0.81) were obtained for TRI and COL analytes using the benchtop and one of the portable spectrometers, and the classification accuracy rates exceeded 90%, suggesting potential for use in clinical screening. Adding a glucose solution improved the correlation and the root mean square error for TRI and COL analytes; however, it did not enhance the correlation or error for the glucose analyte. Raman spectroscopy showed potential to support routine laboratory activities and may have applications in clinical screening.
Collapse
Affiliation(s)
| | | | - Landulfo Silveira
- Universidade Anhembi Morumbi, São José dos Campos, Brazil.
- Centro de Inovação, Tecnologia e Educação - CITÉ, São José dos Campos, Brazil.
| |
Collapse
|
2
|
van Marwick B, Kümmel T, Wühler F, Lauer F, Hoffmann J, Rädle M. Rapid chemical detection and segmentation of latent fingerprints by means of a novel middle-infrared scanning method. Analyst 2024. [PMID: 39555954 DOI: 10.1039/d4an00367e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2024]
Abstract
The fast and reliable detection, segmentation and visualization of latent fingerprints are the main tasks in forensics. Currently, conventional fingerprints are searched for, recorded and subsequently analyzed via traditional destructive physical and chemical methods. For firmly defined crime objects and undefined crime scenes, the forensic process is very time-consuming and can take several hours for a single fingerprint. In this context, a laser-based measurement technique that records complete latent fingerprints under fifteen seconds in a non-destructive manner was developed that digitizes the fingerprint for postprocessing steps. The optical system is based on confocal measurements in the mid-infrared wavelength range (2 μm-4 μm) to analyze specific chemical substances at crime scenes. The resulting chemical segmentation allows molecule-dependent analysis of latent and visually invisible fingerprints, providing clear conclusions about the perpetrator or the course of the crime. In this study, the application of the developed measurement system (MIR scanner) to capture fingerprints in a molecule-dependent manner within few seconds is demonstrated, compared with reference methods such as FTIR (Fourier transform infrared spectroscopy) imaging, and extended to real crime objects.
Collapse
Affiliation(s)
- Björn van Marwick
- Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Mannheim University of Applied Science, Paul Wittsack-Str. 10, 68163 Mannheim, Germany.
| | - Tim Kümmel
- Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Mannheim University of Applied Science, Paul Wittsack-Str. 10, 68163 Mannheim, Germany.
- BASF SE, Carl-Bosch-Straße 38, 67056 Ludwigshafen/Rhein, Germany
| | - Felix Wühler
- Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Mannheim University of Applied Science, Paul Wittsack-Str. 10, 68163 Mannheim, Germany.
| | - Felix Lauer
- Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Mannheim University of Applied Science, Paul Wittsack-Str. 10, 68163 Mannheim, Germany.
| | - Jan Hoffmann
- University of Heidelberg, Im Neuenheimer Feld 440, Germany
| | - Matthias Rädle
- Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Mannheim University of Applied Science, Paul Wittsack-Str. 10, 68163 Mannheim, Germany.
| |
Collapse
|
3
|
Acri G, Testagrossa B, Lucanto MC, Cristadoro S, Pellegrino S, Ruello E, Costa S. Raman Spectroscopy and Cystic Fibrosis Disease: An Alternative Potential Tool for Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) Modulator Response Differentiation-A Pilot Study Based on Serum Samples. Molecules 2024; 29:433. [PMID: 38257346 PMCID: PMC10818724 DOI: 10.3390/molecules29020433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Revised: 01/06/2024] [Accepted: 01/10/2024] [Indexed: 01/24/2024] Open
Abstract
Cystic fibrosis (CF) is a genetic disorder that alters chloride transport in mucous membranes. Recent studies have demonstrated that treatment with modulators of the chloride channel reduces inflammatory markers, restoring, among others, the imbalance of lipids. In this study, we analyzed the serum samples of treated and non-treated patients with modulators with Raman spectroscopy. Nineteen (eight treated an eleven non-treated) patients were considered. The main difference between the two groups appeared in the 3020-2800 cm-1 range. A Voigt deconvolution fit was performed, and nine sub-bands were identified. To distinguish between treated and non-treated patients, the area ratio between the CH3 and CH2 vibration modes was calculated for each patient. The results were validated using statistical analyses. In particular, receiver operating characteristic (ROC) curves and Youden index (Y) were calculated (Area Under Curve (AUC): 0.977; Y: 3.30). An ROC curve represents the performance of the classification, illustrating the diagnostic ability of Raman spectroscopy. It was demonstrated that Raman spectroscopy is able to highlight peculiar differences between elexacaftor/tezacaftor/ivacaftor (ETI)-treated and non-treated patients, in relation with lipids biomarkers.
Collapse
Affiliation(s)
- Giuseppe Acri
- Dipartimento di Scienze Biomediche, Odontoiatriche, e delle Immagini Morfologiche e Funzionali, Università degli Studi di Messina, 98125 Messina, Italy; (G.A.); (E.R.)
| | - Barbara Testagrossa
- Dipartimento di Scienze Biomediche, Odontoiatriche, e delle Immagini Morfologiche e Funzionali, Università degli Studi di Messina, 98125 Messina, Italy; (G.A.); (E.R.)
| | - Maria Cristina Lucanto
- Unità Operativa Semplice Dipartimentale Gastroenterologia Pediatrica e Fibrosi Cistica, Azienda, Ospedaliera Universitaria Policlinico G. Martino, Via Consolare Valeria, 98125 Messina, Italy; (M.C.L.); (S.C.); (S.P.); (S.C.)
| | - Simona Cristadoro
- Unità Operativa Semplice Dipartimentale Gastroenterologia Pediatrica e Fibrosi Cistica, Azienda, Ospedaliera Universitaria Policlinico G. Martino, Via Consolare Valeria, 98125 Messina, Italy; (M.C.L.); (S.C.); (S.P.); (S.C.)
| | - Salvatore Pellegrino
- Unità Operativa Semplice Dipartimentale Gastroenterologia Pediatrica e Fibrosi Cistica, Azienda, Ospedaliera Universitaria Policlinico G. Martino, Via Consolare Valeria, 98125 Messina, Italy; (M.C.L.); (S.C.); (S.P.); (S.C.)
| | - Elisa Ruello
- Dipartimento di Scienze Biomediche, Odontoiatriche, e delle Immagini Morfologiche e Funzionali, Università degli Studi di Messina, 98125 Messina, Italy; (G.A.); (E.R.)
| | - Stefano Costa
- Unità Operativa Semplice Dipartimentale Gastroenterologia Pediatrica e Fibrosi Cistica, Azienda, Ospedaliera Universitaria Policlinico G. Martino, Via Consolare Valeria, 98125 Messina, Italy; (M.C.L.); (S.C.); (S.P.); (S.C.)
| |
Collapse
|
4
|
Kralova K, Kral M, Vrtelka O, Setnicka V. Comparative study of Raman spectroscopy techniques in blood plasma-based clinical diagnostics: A demonstration on Alzheimer's disease. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 304:123392. [PMID: 37716043 DOI: 10.1016/j.saa.2023.123392] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 08/26/2023] [Accepted: 09/08/2023] [Indexed: 09/18/2023]
Abstract
Nowadays, there are still many diseases with limited or no reliable methods of early diagnosis. A popular approach in clinical diagnostic research is Raman spectroscopy, as a relatively simple, cost-effective, and high-throughput method for searching for disease-specific alterations in the composition of blood plasma. However, the high variability of the experimental designs, targeted diseases, or statistical processing in the individual studies makes it challenging to compare and compile the results to critically assess the applicability of Raman spectroscopy in real clinical practice. This study aimed to compare data from a single series of blood plasma samples of patients with Alzheimer's disease and non-demented elderly controls obtained by four different techniques/experimental setups - Raman spectroscopy with excitation at 532 and 785 nm, Raman optical activity, and surface-enhanced Raman scattering spectroscopy. The obtained results showed that the spectra from each Raman spectroscopy technique contain different information about biomolecules of blood plasma or their conformation and may, therefore, offer diverse points of view on underlying biochemical processes of the disease. The classification models based on the datasets generated by the three non-chiroptical variants of Raman spectroscopy exhibited comparable diagnostic performance, all reaching an accuracy close to or equal to 80%. Raman optical activity achieved only 60% classification accuracy, suggesting its limited applicability in the specific case of Alzheimer's disease diagnostics. The described differences in the outputs of the four utilized techniques/setups of Raman spectroscopy imply that their choice may crucially affect the acquired results and thus should be approached carefully concerning the specific purpose.
Collapse
Affiliation(s)
- Katerina Kralova
- Department of Analytical Chemistry, Faculty of Chemical Engineering, University of Chemistry and Technology, Prague, Technická 5, 166 28 Prague 6, Czech Republic
| | - Martin Kral
- Department of Physical Chemistry, Faculty of Chemical Engineering, University of Chemistry and Technology, Prague, Technická 5, 166 28 Prague 6, Czech Republic
| | - Ondrej Vrtelka
- Department of Analytical Chemistry, Faculty of Chemical Engineering, University of Chemistry and Technology, Prague, Technická 5, 166 28 Prague 6, Czech Republic
| | - Vladimir Setnicka
- Department of Analytical Chemistry, Faculty of Chemical Engineering, University of Chemistry and Technology, Prague, Technická 5, 166 28 Prague 6, Czech Republic.
| |
Collapse
|
5
|
Szymoński K, Skirlińska-Nosek K, Lipiec E, Sofińska K, Czaja M, Wilkosz N, Krupa M, Wanat F, Ulatowska-Białas M, Adamek D. Combined analytical approach empowers precise spectroscopic interpretation of subcellular components of pancreatic cancer cells. Anal Bioanal Chem 2023; 415:7281-7295. [PMID: 37906289 PMCID: PMC10684650 DOI: 10.1007/s00216-023-04997-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 09/27/2023] [Accepted: 10/09/2023] [Indexed: 11/02/2023]
Abstract
The lack of specific and sensitive early diagnostic options for pancreatic cancer (PC) results in patients being largely diagnosed with late-stage disease, thus inoperable and burdened with high mortality. Molecular spectroscopic methodologies, such as Raman or infrared spectroscopies, show promise in becoming a leader in screening for early-stage cancer diseases, including PC. However, should such technology be introduced, the identification of differentiating spectral features between various cancer types is required. This would not be possible without the precise extraction of spectra without the contamination by necrosis, inflammation, desmoplasia, or extracellular fluids such as mucous that surround tumor cells. Moreover, an efficient methodology for their interpretation has not been well defined. In this study, we compared different methods of spectral analysis to find the best for investigating the biomolecular composition of PC cells cytoplasm and nuclei separately. Sixteen PC tissue samples of main PC subtypes (ductal adenocarcinoma, intraductal papillary mucinous carcinoma, and ampulla of Vater carcinoma) were collected with Raman hyperspectral mapping, resulting in 191,355 Raman spectra and analyzed with comparative methodologies, specifically, hierarchical cluster analysis, non-negative matrix factorization, T-distributed stochastic neighbor embedding, principal components analysis (PCA), and convolutional neural networks (CNN). As a result, we propose an innovative approach to spectra classification by CNN, combined with PCA for molecular characterization. The CNN-based spectra classification achieved over 98% successful validation rate. Subsequent analyses of spectral features revealed differences among PC subtypes and between the cytoplasm and nuclei of their cells. Our study establishes an optimal methodology for cancer tissue spectral data classification and interpretation that allows precise and cognitive studies of cancer cells and their subcellular components, without mixing the results with cancer-surrounding tissue. As a proof of concept, we describe findings that add to the spectroscopic understanding of PC.
Collapse
Affiliation(s)
- Krzysztof Szymoński
- Department of Pathomorphology, Medical College, Jagiellonian University, Kraków, Poland.
- Department of Pathomorphology, University Hospital, Kraków, Poland.
| | - Katarzyna Skirlińska-Nosek
- Faculty of Physics, Astronomy and Applied Computer Science, M. Smoluchowski Institute of Physics, Jagiellonian University, Kraków, Poland
- Doctoral School of Exact and Natural Sciences, Jagiellonian University, Kraków, Poland
| | - Ewelina Lipiec
- Faculty of Physics, Astronomy and Applied Computer Science, M. Smoluchowski Institute of Physics, Jagiellonian University, Kraków, Poland
| | - Kamila Sofińska
- Faculty of Physics, Astronomy and Applied Computer Science, M. Smoluchowski Institute of Physics, Jagiellonian University, Kraków, Poland
| | - Michał Czaja
- Faculty of Physics, Astronomy and Applied Computer Science, M. Smoluchowski Institute of Physics, Jagiellonian University, Kraków, Poland
- Doctoral School of Exact and Natural Sciences, Jagiellonian University, Kraków, Poland
| | - Natalia Wilkosz
- Faculty of Physics, Astronomy and Applied Computer Science, M. Smoluchowski Institute of Physics, Jagiellonian University, Kraków, Poland
- AGH University of Krakow, Faculty of Physics and Applied Computer Science, Kraków, Poland
| | - Matylda Krupa
- Department of Pathomorphology, Medical College, Jagiellonian University, Kraków, Poland
| | - Filip Wanat
- Department of Pathomorphology, Medical College, Jagiellonian University, Kraków, Poland
| | - Magdalena Ulatowska-Białas
- Department of Pathomorphology, Medical College, Jagiellonian University, Kraków, Poland
- Department of Pathomorphology, University Hospital, Kraków, Poland
| | - Dariusz Adamek
- Department of Pathomorphology, Medical College, Jagiellonian University, Kraków, Poland
| |
Collapse
|
6
|
Vincent D, Bui A, Ezernieks V, Shahinfar S, Luke T, Ram D, Rigas N, Panozzo J, Rochfort S, Daetwyler H, Hayden M. A community resource to mass explore the wheat grain proteome and its application to the late-maturity alpha-amylase (LMA) problem. Gigascience 2022; 12:giad084. [PMID: 37919977 PMCID: PMC10627334 DOI: 10.1093/gigascience/giad084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 08/02/2023] [Accepted: 09/19/2023] [Indexed: 11/04/2023] Open
Abstract
BACKGROUND Late-maturity alpha-amylase (LMA) is a wheat genetic defect causing the synthesis of high isoelectric point alpha-amylase following a temperature shock during mid-grain development or prolonged cold throughout grain development, both leading to starch degradation. While the physiology is well understood, the biochemical mechanisms involved in grain LMA response remain unclear. We have applied high-throughput proteomics to 4,061 wheat flours displaying a range of LMA activities. Using an array of statistical analyses to select LMA-responsive biomarkers, we have mined them using a suite of tools applicable to wheat proteins. RESULTS We observed that LMA-affected grains activated their primary metabolisms such as glycolysis and gluconeogenesis; TCA cycle, along with DNA- and RNA- binding mechanisms; and protein translation. This logically transitioned to protein folding activities driven by chaperones and protein disulfide isomerase, as well as protein assembly via dimerisation and complexing. The secondary metabolism was also mobilized with the upregulation of phytohormones and chemical and defence responses. LMA further invoked cellular structures, including ribosomes, microtubules, and chromatin. Finally, and unsurprisingly, LMA expression greatly impacted grain storage proteins, as well as starch and other carbohydrates, with the upregulation of alpha-gliadins and starch metabolism, whereas LMW glutenin, stachyose, sucrose, UDP-galactose, and UDP-glucose were downregulated. CONCLUSIONS To our knowledge, this is not only the first proteomics study tackling the wheat LMA issue but also the largest plant-based proteomics study published to date. Logistics, technicalities, requirements, and bottlenecks of such an ambitious large-scale high-throughput proteomics experiment along with the challenges associated with big data analyses are discussed.
Collapse
Affiliation(s)
- Delphine Vincent
- Agriculture Victoria Research, AgriBio, Center Centre for AgriBioscience, Bundoora, VIC 3083, Australia
| | - AnhDuyen Bui
- Agriculture Victoria Research, AgriBio, Center Centre for AgriBioscience, Bundoora, VIC 3083, Australia
| | - Vilnis Ezernieks
- Agriculture Victoria Research, AgriBio, Center Centre for AgriBioscience, Bundoora, VIC 3083, Australia
| | - Saleh Shahinfar
- Agriculture Victoria Research, AgriBio, Center Centre for AgriBioscience, Bundoora, VIC 3083, Australia
| | - Timothy Luke
- Agriculture Victoria Research, AgriBio, Center Centre for AgriBioscience, Bundoora, VIC 3083, Australia
| | - Doris Ram
- Agriculture Victoria Research, AgriBio, Center Centre for AgriBioscience, Bundoora, VIC 3083, Australia
| | - Nicholas Rigas
- Agriculture Victoria Research, Grains Innovation Park, Horsham, VIC 3400, Australia
| | - Joe Panozzo
- Agriculture Victoria Research, Grains Innovation Park, Horsham, VIC 3400, Australia
- Centre for Agricultural Innovation, University of Melbourne, Parkville, VIC 3010, Australia
| | - Simone Rochfort
- Agriculture Victoria Research, AgriBio, Center Centre for AgriBioscience, Bundoora, VIC 3083, Australia
- School of Applied Systems Biology, La Trobe University, Bundoora, VIC 3083, Australia
| | - Hans Daetwyler
- Agriculture Victoria Research, AgriBio, Center Centre for AgriBioscience, Bundoora, VIC 3083, Australia
- School of Applied Systems Biology, La Trobe University, Bundoora, VIC 3083, Australia
| | - Matthew Hayden
- Agriculture Victoria Research, AgriBio, Center Centre for AgriBioscience, Bundoora, VIC 3083, Australia
- School of Applied Systems Biology, La Trobe University, Bundoora, VIC 3083, Australia
| |
Collapse
|
7
|
Koehler A, Scroferneker ML, Pereira BAS, Mateus Pereira de Souza N, de Souza Cavalcante R, Mendes RP, Corbellini VA. Using infrared spectroscopy of serum and chemometrics for diagnosis of paracoccidioidomycosis. J Pharm Biomed Anal 2022; 221:115021. [DOI: 10.1016/j.jpba.2022.115021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Revised: 08/25/2022] [Accepted: 08/26/2022] [Indexed: 10/31/2022]
|
8
|
ATR-IR Spectroscopy Application to Diagnostic Screening of Advanced Endometriosis. OXIDATIVE MEDICINE AND CELLULAR LONGEVITY 2022; 2022:4777434. [PMID: 35707272 PMCID: PMC9192200 DOI: 10.1155/2022/4777434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 05/13/2022] [Accepted: 05/19/2022] [Indexed: 11/18/2022]
Abstract
Endometriosis is one of the most common gynecological diseases among young women of reproductive age. Thus far, it has not been possible to define a parameter that is sensitive and specific enough to be a recognized biomarker for diagnosing this disease. Nonspecific symptoms of endometriosis and delayed diagnosis are impulses for researching noninvasive methods of differentiating endometriosis from other gynecological disorders. We compared three groups of individuals in our research: women with endometriosis (E), patients suffering from other gynecological disorders (nonendometriosis, NE), and healthy women from the control group (C). Partial least squares discriminant analysis (PLS-DA) models were developed based on selected serum biochemical parameters, specific regions of the serum’s infrared attenuated total reflectance (FTIR ATR) spectra, and combined data. Incorporating the spectral data into the models significantly improved differentiation among the three groups, with an overall accuracy of 87.5%, 97.3%, and 98.5%, respectively. This study shows that infrared spectroscopy and discriminant analysis can be used to differentiate serum samples among women with advanced endometriosis, women without this disease, i.e., healthy women, and, most importantly, also women with other benign gynecological disorders.
Collapse
|
9
|
Aitekenov S, Sultangaziyev A, Abdirova P, Yussupova L, Gaipov A, Utegulov Z, Bukasov R. Raman, Infrared and Brillouin Spectroscopies of Biofluids for Medical Diagnostics and for Detection of Biomarkers. Crit Rev Anal Chem 2022; 53:1561-1590. [PMID: 35157535 DOI: 10.1080/10408347.2022.2036941] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/23/2023]
Abstract
This review surveys Infrared, Raman/SERS and Brillouin spectroscopies for medical diagnostics and detection of biomarkers in biofluids, that include urine, blood, saliva and other biofluids. These optical sensing techniques are non-contact, noninvasive and relatively rapid, accurate, label-free and affordable. However, those techniques still have to overcome some challenges to be widely adopted in routine clinical diagnostics. This review summarizes and provides insights on recent advancements in research within the field of vibrational spectroscopy for medical diagnostics and its use in detection of many health conditions such as kidney injury, cancers, cardiovascular and infectious diseases. The six comprehensive tables in the review and four tables in supplementary information summarize a few dozen experimental papers in terms of such analytical parameters as limit of detection, range, diagnostic sensitivity and specificity, and other figures of merits. Critical comparison between SERS and FTIR methods of analysis reveals that on average the reported sensitivity for biomarkers in biofluids for SERS vs FTIR is about 103 to 105 times higher, since LOD SERS are lower than LOD FTIR by about this factor. High sensitivity gives SERS an edge in detection of many biomarkers present in biofluids at low concentration (nM and sub nM), which can be particularly advantageous for example in early diagnostics of cancer or viral infections.HighlightsRaman, Infrared spectroscopies use low volume of biofluidic samples, little sample preparation, fast time of analysis and relatively inexpensive instrumentation.Applications of SERS may be a bit more complicated than applications of FTIR (e.g., limited shelf life for nanoparticles and substrates, etc.), but this can be generously compensated by much higher (by several order of magnitude) sensitivity in comparison to FTIR.High sensitivity makes SERS a noninvasive analytical method of choice for detection, quantification and diagnostics of many health conditions, metabolites, and drugs, particularly in diagnostics of cancer, including diagnostics of its early stages.FTIR, particularly ATR-FTIR can be a method of choice for efficient sensing of many biomarkers, present in urine, blood and other biofluids at sufficiently high concentrations (mM and even a few µM)Brillouin scattering spectroscopy detecting visco-elastic properties of probed liquid medium, may also find application in clinical analysis of some biofluids, such as cerebrospinal fluid and urine.
Collapse
Affiliation(s)
- Sultan Aitekenov
- Department of Chemistry, School of Sciences and Humanities (SSH), Nazarbayev University, Nur-Sultan, Kazakhstan
| | - Alisher Sultangaziyev
- Department of Chemistry, School of Sciences and Humanities (SSH), Nazarbayev University, Nur-Sultan, Kazakhstan
| | - Perizat Abdirova
- Department of Chemistry, School of Sciences and Humanities (SSH), Nazarbayev University, Nur-Sultan, Kazakhstan
| | - Lyailya Yussupova
- Department of Chemistry, School of Sciences and Humanities (SSH), Nazarbayev University, Nur-Sultan, Kazakhstan
| | | | - Zhandos Utegulov
- Department of Physics, School of Sciences and Humanities (SSH), Nazarbayev University, Nur-Sultan, Kazakhstan
| | - Rostislav Bukasov
- Department of Chemistry, School of Sciences and Humanities (SSH), Nazarbayev University, Nur-Sultan, Kazakhstan
| |
Collapse
|
10
|
Bel’skaya LV, Sarf EA, Solomatin DV. Application of FTIR Spectroscopy for Quantitative Analysis of Blood Serum: A Preliminary Study. Diagnostics (Basel) 2021; 11:diagnostics11122391. [PMID: 34943626 PMCID: PMC8700755 DOI: 10.3390/diagnostics11122391] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Revised: 12/14/2021] [Accepted: 12/17/2021] [Indexed: 11/16/2022] Open
Abstract
The aim of this study was to analyze the possibility of simultaneous determination of the concentration of components from the characteristics of FTIR spectra using the example of a model blood serum. To prepare model solutions, a set of freeze-dried control sera based on bovine blood serum was used, certified for approximately 38 parameters. Based on the values of the absorbance and areas of absorption bands in the FTIR spectra of model solutions, a regression equation was constructed by solving a nonlinear problem using the generalized reduced gradient method. By using the absorbance of the absorption bands at 1717 and 3903 cm−1 and the areas of the absorption bands at 616, 3750, and 3903 cm−1, it is possible to simultaneously determine the concentrations of 38 components with an error of less than 0.1%. The results obtained confirm the potential clinical use of FTIR spectroscopy as a reagent-free express method for the analysis of blood serum. However, its practical implementation requires additional research, in particular, analysis of real blood serum samples and validation of the method.
Collapse
Affiliation(s)
- Lyudmila V. Bel’skaya
- Biochemistry Research Laboratory, Omsk State Pedagogical University, 644099 Omsk, Russia;
- Correspondence:
| | - Elena A. Sarf
- Biochemistry Research Laboratory, Omsk State Pedagogical University, 644099 Omsk, Russia;
| | - Denis V. Solomatin
- Department of Mathematics and Mathematics Teaching Methods, Omsk State Pedagogical University, 644043 Omsk, Russia;
| |
Collapse
|
11
|
Wang Q, Wu G, Pian F, Shan P, Li Z, Ma Z. Simultaneous detection of glucose, triglycerides, and total cholesterol in whole blood by Fourier-Transform Raman spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 260:119906. [PMID: 34020385 DOI: 10.1016/j.saa.2021.119906] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Revised: 04/06/2021] [Accepted: 04/30/2021] [Indexed: 06/12/2023]
Abstract
In this paper, a reagent-free simultaneous and direct detection method of three analytes in human blood based on Fourier-transform Raman (FT-Raman) spectroscopy with 1064 nm laser radiation was proposed for the first time. A total of 161 human blood samples were characterized by FT-Raman spectroscopy under the excitation laser source of 1064 nm. In order to achieve a robust regression model, the Nonlinear Iterative Partial Least Squares (NIPALS) with orthogonal signal correction (OSC) algorithm and sample set partition based on a joint x-y distance (SPXY) is used to establish multivariate calibration models. The root means square error of cross-validation (RMSECV), root mean square error of prediction (RMSEP), correlation coefficients (R2) and ratio of performance to deviation (RPD) were 0.34255 mg/dL, 0.3662 mg/dL, 0.99982 and 56.3524 for glucose, 0.33656 mg/dL, 0.75736 mg/dL, 0.99967 and 34.9169 for total cholesterol (TC), and 0.29956 mg/dL, 0.27469 mg/dL, 0.99998 and 173.5098 for triglycerides (TG), respectively. The analysis results showed that the proposed method could be able to accurately predict the concentration of glucose, TC and TG in blood. This method can instantaneous multi-component detection on whole blood.
Collapse
Affiliation(s)
- Qiaoyun Wang
- College of Information Science and Engineering, Northeastern University, Shenyang, Liaoning Province 110819, China; Hebei Key Laboratory of Micro-Nano Precision Optical Sensing and Measurement Technology, Qinhuangdao 066004, China.
| | - Guangfei Wu
- Department of endocrinology, The First Hospital in Qinhuangdao, Qinhuangdao, Hebei Province 066400, China
| | - Feifei Pian
- College of Information Science and Engineering, Northeastern University, Shenyang, Liaoning Province 110819, China; Hebei Key Laboratory of Micro-Nano Precision Optical Sensing and Measurement Technology, Qinhuangdao 066004, China
| | - Peng Shan
- College of Information Science and Engineering, Northeastern University, Shenyang, Liaoning Province 110819, China
| | - Zhigang Li
- College of Information Science and Engineering, Northeastern University, Shenyang, Liaoning Province 110819, China
| | - Zhenhe Ma
- College of Information Science and Engineering, Northeastern University, Shenyang, Liaoning Province 110819, China
| |
Collapse
|
12
|
Mohammadi M, Khanmohammadi Khorrami M, Vatanparast H, Ghasemzadeh H. Prediction of surface tension of solution in the presence of hydrophilic silica nanoparticle and anionic surfactant by ATR-FTIR spectroscopy and chemometric methods. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 255:119697. [PMID: 33774416 DOI: 10.1016/j.saa.2021.119697] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2020] [Revised: 02/20/2021] [Accepted: 03/08/2021] [Indexed: 06/12/2023]
Abstract
In the current research, an analytical method was proposed for the quantitative determination of surface tension of anionic surfactant solutions in the presence of hydrophilic silica nanoparticles using attenuated total reflection Fourier-transform infrared (ATR-FTIR) spectroscopy and chemometric methods. The surface tension behavior of anionic surfactant solutions considerably changes by the addition of silica nanoparticles with different particle size. The spectral data of solutions were used for prediction of surface tension using two calibration methods based on support vector machine regression (SVM-R) as a non-linear algorithm and partial least squares regression (PLS-R) as a linear algorithm. For preprocessing of data, baseline correction and standard normal variate (SNV) were also applied. Root mean square error of prediction (RMSEP) in SVM-R and PLS-R methods were 4.203 and 4.507, respectively. Considering the complexity of the samples, the SVM-R model was found to be reliable. The proposed method is fast and easy for measurement of the surface tension of surfactant solutions without any sample preparation step in chemical enhanced oil recovery (C-EOR).
Collapse
Affiliation(s)
- Mahsa Mohammadi
- Department of Chemistry, Faculty of Science, Imam Khomeini International University, Qazvin, Iran.
| | | | - Hamid Vatanparast
- Petroleum Engineering Research Division, Research Institute of Petroleum Industry (RIPI), Tehran, Iran
| | - Hossein Ghasemzadeh
- Department of Chemistry, Faculty of Science, Imam Khomeini International University, Qazvin, Iran
| |
Collapse
|
13
|
Pinto GC, Leal LB, Magalhães NC, Pereira MF, Vassallo PF, Pereira TM, Barauna VG, Byrne HJ, Carvalho LFCS. The potential of FT-IR spectroscopy for improving healthcare in sepsis - An animal model study. Photodiagnosis Photodyn Ther 2021; 34:102312. [PMID: 33930577 DOI: 10.1016/j.pdpdt.2021.102312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2020] [Revised: 04/07/2021] [Accepted: 04/23/2021] [Indexed: 11/25/2022]
Abstract
Fourier Transform-Infrared (FT-IR) absorption spectroscopy has been used to investigate pathophysiological changes caused by sepsis. Sepsis has been defined as a potentially fatal organic dysfunction caused by a dysregulated host response to infection and can lead a patient to risk of death. This study used samples consisting of the blood plasma of mice which were induced to sepsis state, compared to a healthy group using FT-IR associated with attenuated total reflectance (ATR) spectroscopy. For statistical analysis, principal components analysis (PCA) and linear discriminant analysis (LDA) were applied, independently, to the second derivative spectra of both the fingerprint (900-1800 cm-1) and the high wavenumber (2800-3100 cm-1) regions. The technique efficiently differentiated the blood plasma of the two groups, sepsis and healthy mice, the analysis indicating that fatty acids and lipids in the blood samples could be an important biomarker of sepsis.
Collapse
Affiliation(s)
- G C Pinto
- Post Graduation Program in Physiological Sciences, Federal University of Espírito Santo, Marechal Campos Ave, 1468, Maruípe, 29040-090, Vitória, Espírito Santo, Brazil
| | - L B Leal
- Post Graduation Program in Physiological Sciences, Federal University of Espírito Santo, Marechal Campos Ave, 1468, Maruípe, 29040-090, Vitória, Espírito Santo, Brazil.
| | - N C Magalhães
- Universidade de Taubaté. R. dos Operários, 09 - Centro, Taubaté, SP, 12020-340, Brazil
| | - M F Pereira
- Post Graduation Program in Physiological Sciences, Federal University of Espírito Santo, Marechal Campos Ave, 1468, Maruípe, 29040-090, Vitória, Espírito Santo, Brazil
| | - P F Vassallo
- Post Graduation Program in Physiological Sciences, Federal University of Espírito Santo, Marechal Campos Ave, 1468, Maruípe, 29040-090, Vitória, Espírito Santo, Brazil; Clinical Hospital, Federal University of Minas Gerais, Belo Horizonte, MG, Brazil
| | - T M Pereira
- Universidade Federal do Estado de São Paulo. R. Talim, 330 - Vila Nair, São José dos Campos, SP, 12231-0, Brazil
| | - V G Barauna
- Department of Physiological Sciences, Federal University of Espírito Santo (UFES), Marechal Campos Ave, 1468, Maruípe, 29040-090, Vitória, Espírito Santo, Brazil
| | - H J Byrne
- FOCAS Research Institute, Technological University Dublin, Kevin Street, Dublin 8, Ireland
| | - L F C S Carvalho
- Universidade de Taubaté. R. dos Operários, 09 - Centro, Taubaté, SP, 12020-340, Brazil; Centro Universitário Braz Cubas. Av. Francisco Rodrigues Filho, 1233 - Vila Mogilar, Mogi das Cruzes, SP, 08773-380, Brazil
| |
Collapse
|
14
|
Mateus T, Almeida I, Costa A, Viegas D, Magalhães S, Martins F, Herdeiro MT, da Cruz e Silva OAB, Fraga C, Alves I, Nunes A, Rebelo S. Fourier-Transform Infrared Spectroscopy as a Discriminatory Tool for Myotonic Dystrophy Type 1 Metabolism: A Pilot Study. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:ijerph18073800. [PMID: 33917301 PMCID: PMC8038712 DOI: 10.3390/ijerph18073800] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Revised: 03/26/2021] [Accepted: 03/30/2021] [Indexed: 12/19/2022]
Abstract
Myotonic dystrophy type 1 (DM1) is a hereditary disease characterized by progressive distal muscle weakness and myotonia. Patients with DM1 have abnormal lipid metabolism and a high propensity to develop a metabolic syndrome in comparison to the general population. It follows that metabolome evaluation in these patients is crucial and may contribute to a better characterization and discrimination between DM1 disease phenotypes and severities. Several experimental approaches are possible to carry out such an analysis; among them is Fourier-transform infrared spectroscopy (FTIR) which evaluates metabolic profiles by categorizing samples through their biochemical composition. In this study, FTIR spectra were acquired and analyzed using multivariate analysis (Principal Component Analysis) using skin DM1 patient-derived fibroblasts and controls. The results obtained showed a clear discrimination between both DM1-derived fibroblasts with different CTG repeat length and with the age of disease onset; this was evident given the distinct metabolic profiles obtained for the two groups. Discrimination could be attributed mainly to the altered lipid metabolism and proteins in the 1800–1500 cm−1 region. These results suggest that FTIR spectroscopy is a valuable tool to discriminate both DM1-derived fibroblasts with different CTG length and age of onset and to study the metabolomic profile of patients with DM1.
Collapse
Affiliation(s)
- Tiago Mateus
- Department of Medical Sciences, Institute of Biomedicine (iBiMED), University of Aveiro, 3810-193 Aveiro, Portugal; (T.M.); (I.A.); (A.C.); (D.V.); (S.M.); (F.M.); (M.T.H.); (O.A.B.d.C.eS.); (A.N.)
| | - Idália Almeida
- Department of Medical Sciences, Institute of Biomedicine (iBiMED), University of Aveiro, 3810-193 Aveiro, Portugal; (T.M.); (I.A.); (A.C.); (D.V.); (S.M.); (F.M.); (M.T.H.); (O.A.B.d.C.eS.); (A.N.)
| | - Adriana Costa
- Department of Medical Sciences, Institute of Biomedicine (iBiMED), University of Aveiro, 3810-193 Aveiro, Portugal; (T.M.); (I.A.); (A.C.); (D.V.); (S.M.); (F.M.); (M.T.H.); (O.A.B.d.C.eS.); (A.N.)
| | - Diana Viegas
- Department of Medical Sciences, Institute of Biomedicine (iBiMED), University of Aveiro, 3810-193 Aveiro, Portugal; (T.M.); (I.A.); (A.C.); (D.V.); (S.M.); (F.M.); (M.T.H.); (O.A.B.d.C.eS.); (A.N.)
| | - Sandra Magalhães
- Department of Medical Sciences, Institute of Biomedicine (iBiMED), University of Aveiro, 3810-193 Aveiro, Portugal; (T.M.); (I.A.); (A.C.); (D.V.); (S.M.); (F.M.); (M.T.H.); (O.A.B.d.C.eS.); (A.N.)
- Department of Chemistry, Aveiro Institute of Materials (CICECO), University of Aveiro, 3810-193 Aveiro, Portugal
| | - Filipa Martins
- Department of Medical Sciences, Institute of Biomedicine (iBiMED), University of Aveiro, 3810-193 Aveiro, Portugal; (T.M.); (I.A.); (A.C.); (D.V.); (S.M.); (F.M.); (M.T.H.); (O.A.B.d.C.eS.); (A.N.)
| | - Maria Teresa Herdeiro
- Department of Medical Sciences, Institute of Biomedicine (iBiMED), University of Aveiro, 3810-193 Aveiro, Portugal; (T.M.); (I.A.); (A.C.); (D.V.); (S.M.); (F.M.); (M.T.H.); (O.A.B.d.C.eS.); (A.N.)
| | - Odete A. B. da Cruz e Silva
- Department of Medical Sciences, Institute of Biomedicine (iBiMED), University of Aveiro, 3810-193 Aveiro, Portugal; (T.M.); (I.A.); (A.C.); (D.V.); (S.M.); (F.M.); (M.T.H.); (O.A.B.d.C.eS.); (A.N.)
| | - Carla Fraga
- Neurology Department, Centro Hospitalar Tâmega e Sousa (CHTS), 4564-007 Penafiel, Portugal; (C.F.); (I.A.)
| | - Ivânia Alves
- Neurology Department, Centro Hospitalar Tâmega e Sousa (CHTS), 4564-007 Penafiel, Portugal; (C.F.); (I.A.)
| | - Alexandra Nunes
- Department of Medical Sciences, Institute of Biomedicine (iBiMED), University of Aveiro, 3810-193 Aveiro, Portugal; (T.M.); (I.A.); (A.C.); (D.V.); (S.M.); (F.M.); (M.T.H.); (O.A.B.d.C.eS.); (A.N.)
| | - Sandra Rebelo
- Department of Medical Sciences, Institute of Biomedicine (iBiMED), University of Aveiro, 3810-193 Aveiro, Portugal; (T.M.); (I.A.); (A.C.); (D.V.); (S.M.); (F.M.); (M.T.H.); (O.A.B.d.C.eS.); (A.N.)
- Correspondence: ; Tel.: +351-924-406-306; Fax: +351-234-372-587
| |
Collapse
|
15
|
A Preliminary Study of FTIR Spectroscopy as a Potential Non-Invasive Screening Tool for Pediatric Precursor B Lymphoblastic Leukemia. Molecules 2021; 26:molecules26041174. [PMID: 33671817 PMCID: PMC7926870 DOI: 10.3390/molecules26041174] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2021] [Revised: 02/17/2021] [Accepted: 02/18/2021] [Indexed: 01/19/2023] Open
Abstract
Early detection of the most common pediatric neoplasm, B-cell precursor lymphoblastic leukemia (BCP-ALL), is challenging and requires invasive bone marrow biopsies. The purpose of this study was to establish new biomarkers for early screening to detect pediatric leukemia. In this small cohort study, Fourier transform infrared (FTIR) spectra were obtained from blood sera of 10 patients with BCP-ALL and were compared with the control samples from 10 children with some conditions other than neoplasm. Using various analytical approaches, including a new physical model, some significant differences were observable. The most important include: the different peak area ratio 2965/1645 cm−1 (p = 0.002); the lower average percentage of both β-sheet and β-turn protein structures in the sera of BCP-ALL patients (p = 0.03); an AdaBoost-based predictive model for classifying healthy vs. BCP-ALL patients with 85% accuracy; and the phase shift of the first derivative in the spectral range 1050–1042 cm−1 correlating with white blood cell (WBC) and blast cell count in BCP-ALL patients contrary to the samples obtained from healthy controls. Although verification in larger groups of patients will be necessary, these promising results suggest that FTIR spectroscopy may have future potential for the early screening of BCP-ALL.
Collapse
|
16
|
Encapsulation of caffeine in spray-dried micro-eggs for controlled release: The effect of spray-drying (cooking) temperature. Food Hydrocoll 2020. [DOI: 10.1016/j.foodhyd.2020.105979] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
|
17
|
Oleszko A, Marek J, Muzyka-Wozniak M. Application of a Partial Least Squares Regression Algorithm for Posterior Chamber Phakic Intraocular Lens Sizing and Postoperative Vault Prediction. J Refract Surg 2020; 36:606-612. [PMID: 32901828 DOI: 10.3928/1081597x-20200630-01] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2020] [Accepted: 06/24/2020] [Indexed: 11/20/2022]
Abstract
PURPOSE To develop and validate a new algorithm for predicting the postoperative vault of the myopic EVO Visian Implantable Collamer Lens (ICL) V4c (STAAR Surgical AG). METHODS This study included 81 eyes of 43 patients who had undergone ICL implantation. Preoperative data obtained by swept-source optical coherence tomography, Scheimpflug camera, and anterior segment optical coherence tomography were applied to develop a new partial least squares (PLS) regression algorithm. ICL sizing was performed using the standard white-to-white method with the online calculation and ordering system. The postoperative vault was assessed based on anterior segment optical coherence tomography. The PLS approach was applied to create the calibration model for predicting the postoperative vault. The new PLS model was cross-validated using the leave-one-out method and compared to a recently published linear regression model. Agreement between the actual and predicted vault values for the two methods was assessed by the Bland-Altman method. RESULTS There was a statistically significant correlation (P < .001, r = 0.73) between the postoperative vault values and those predicted by the PLS algorithm. Validation of the PLS model yielded lower mean differences and limits of agreement (0 and 410 µm, respectively) than the linear regression method (400 and 750 µm, respectively). CONCLUSIONS The PLS algorithm increases the precision of ICL vault prediction. However, it shows a tendency to overestimate small vault values and underestimate high vaults. [J Refract Surg. 2020;36(9):606-612.].
Collapse
|
18
|
Mohammadi M, Khanmohammadi Khorrami M, Vatani A, Ghasemzadeh H, Vatanparast H, Bahramian A, Fallah A. Rapid determination and classification of crude oils by ATR-FTIR spectroscopy and chemometric methods. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 232:118157. [PMID: 32106028 DOI: 10.1016/j.saa.2020.118157] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2019] [Revised: 02/08/2020] [Accepted: 02/15/2020] [Indexed: 06/10/2023]
Abstract
Classification based on °API gravity is very important to estimate the parameters related to the extraction, purification, toxicity, and pricing of crude oils. Spectroscopy methods show some advantages over ASTM and API methods for crude oil analysis. The attenuated total reflection Fourier-transform infrared (ATR-FTIR) spectroscopy coupled with chemometric methods has been applied as a quick and non-destructive method for crude oil analysis. In this work, a new analytical method using ATR-FTIR spectroscopy associated with chemometric methods were proposed for adressing regression and classification tasks for crude oils analysis based on °API gravity values. The designed methods are rapid, economic, and nondestructive ways in production process of oil industry. The spectral data were used for estimation of °API gravity using two approaches according to PLS-R and SVM-R algorithm, separately. The ATR-FTIR spectral data were also analyzed by classification method using the partial least squares-discriminant analysis (PLS-DA) for crude oil classification. The samples were classified into three classes based on their °API gravity values. The SVM-R model showed better results than PLS-R for °API gravity values using the F-test at 95% of confidence. The result of classification, showed about 100% accuracy and a zero classification error for calibration and prediction samples in PLS-DA algorithm.
Collapse
Affiliation(s)
- Mahsa Mohammadi
- Department of Chemistry, Faculty of Science, Imam Khomeini International University, Qazvin, Iran
| | | | - Ali Vatani
- Institute of Liquefied Natural Gas (I-LNG), School of Chemical Engineering, College of Engineering, University of Tehran, Tehran, Iran
| | - Hossein Ghasemzadeh
- Department of Chemistry, Faculty of Science, Imam Khomeini International University, Qazvin, Iran
| | - Hamid Vatanparast
- Petroleum Engineering Research Division, Research Institute of Petroleum Industry (RIPI), Tehran, Iran
| | - Alireza Bahramian
- Institute of Petroleum Engineering, College of Engineering, University of Tehran, Tehran, Iran
| | - Afshin Fallah
- Department of Chemistry, Faculty of Science, Imam Khomeini International University, Qazvin, Iran
| |
Collapse
|
19
|
Biofluid diagnostics by FTIR spectroscopy: A platform technology for cancer detection. Cancer Lett 2020; 477:122-130. [DOI: 10.1016/j.canlet.2020.02.020] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2019] [Revised: 01/31/2020] [Accepted: 02/14/2020] [Indexed: 12/19/2022]
|
20
|
Pre-gelation assisted spray drying of whey protein isolates (WPI) for microencapsulation and controlled release. Lebensm Wiss Technol 2020. [DOI: 10.1016/j.lwt.2019.108625] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
|
21
|
Tan S, Zhong C, Langrish T. Microencapsulation of pepsin in the spray-dried WPI (whey protein isolates) matrices for controlled release. J FOOD ENG 2019. [DOI: 10.1016/j.jfoodeng.2019.06.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
|
22
|
Nengsih TA, Bertrand F, Maumy-Bertrand M, Meyer N. Determining the number of components in PLS regression on incomplete data set. Stat Appl Genet Mol Biol 2019; 18:/j/sagmb.ahead-of-print/sagmb-2018-0059/sagmb-2018-0059.xml. [PMID: 31693499 DOI: 10.1515/sagmb-2018-0059] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Partial least squares regression - or PLS regression - is a multivariate method in which the model parameters are estimated using either the SIMPLS or NIPALS algorithm. PLS regression has been extensively used in applied research because of its effectiveness in analyzing relationships between an outcome and one or several components. Note that the NIPALS algorithm can provide estimates parameters on incomplete data. The selection of the number of components used to build a representative model in PLS regression is a central issue. However, how to deal with missing data when using PLS regression remains a matter of debate. Several approaches have been proposed in the literature, including the Q2 criterion, and the AIC and BIC criteria. Here we study the behavior of the NIPALS algorithm when used to fit a PLS regression for various proportions of missing data and different types of missingness. We compare criteria to select the number of components for a PLS regression on incomplete data set and on imputed data set using three imputation methods: multiple imputation by chained equations, k-nearest neighbour imputation, and singular value decomposition imputation. We tested various criteria with different proportions of missing data (ranging from 5% to 50%) under different missingness assumptions. Q2-leave-one-out component selection methods gave more reliable results than AIC and BIC-based ones.
Collapse
Affiliation(s)
- Titin Agustin Nengsih
- IRMA, CNRS UMR 7501, Université de Strasbourg, 67084 Strasbourg, Cedex, France.,iCUBE, CNRS UMR 7357, Université de Strasbourg, 67400 Strasbourg, France
| | - Frédéric Bertrand
- IRMA, CNRS UMR 7501, Université de Strasbourg, 67084 Strasbourg, Cedex, France
| | | | - Nicolas Meyer
- iCUBE, CNRS UMR 7357, Université de Strasbourg, 67400 Strasbourg, France.,GMRC, Public Health Department, Strasbourg University Hospital, Strasbourg, France
| |
Collapse
|
23
|
Mohammadi M, Khorrami MK, Ghasemzadeh H. ATR-FTIR spectroscopy and chemometric techniques for determination of polymer solution viscosity in the presence of SiO 2 nanoparticle and salinity. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 220:117049. [PMID: 31141782 DOI: 10.1016/j.saa.2019.04.041] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2018] [Revised: 04/17/2019] [Accepted: 04/17/2019] [Indexed: 06/09/2023]
Abstract
An analytical method was proposed for quantitative determination of rheological properties of polyacrylamide (PAM) solution in the presence of SiO2 nanoparticle and NaCl. The viscosity of PAM-SiO2 nanohybrid solution was predicted using attenuated total reflection Fourier-transform infrared (ATR-FTIR) spectroscopy in the wavenumber range of 800-3000 cm-1 and chemometrics methods. Support vector machine regression (SVM-R) as a non-linear multivariate calibration procedure and partial least squares regression (PLS-R) as a linear procedure were applied for calibration. Preprocessing methods such as baseline correction and standard normal variate (SNV) were also utilized. Root mean square error of prediction (RMSEP) in SNV-SVM and SNV-PLS methods were 3.231 and 6.302, respectively. Considering the complexity of the samples, the SVM-R model was found to be reliable. The proposed method is rapid and simple without any sample preparation step for measurement of the viscosity of polymer solutions in chemical enhanced oil recovery (CEOR).
Collapse
Affiliation(s)
- Mahsa Mohammadi
- Department of Chemistry, Faculty of Science, Imam Khomeini International University, Qazvin, Iran
| | | | - Hossein Ghasemzadeh
- Department of Chemistry, Faculty of Science, Imam Khomeini International University, Qazvin, Iran
| |
Collapse
|
24
|
Zamora-Mendoza BN, Espinosa-Tanguma R, Ramírez-Elías MG, Cabrera-Alonso R, Montero-Moran G, Portales-Pérez D, Rosales-Romo JA, Gonzalez JF, Gonzalez C. Surface-enhanced raman spectroscopy: A non invasive alternative procedure for early detection in childhood asthma biomarkers in saliva. Photodiagnosis Photodyn Ther 2019; 27:85-91. [PMID: 31082526 DOI: 10.1016/j.pdpdt.2019.05.009] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2018] [Revised: 03/28/2019] [Accepted: 05/09/2019] [Indexed: 12/18/2022]
Abstract
The early detection of bronchial inflammation in asthma, through a non-invasive, simple method and under a subclinical state, could lead to a more effective control of this condition. The aim of this study was to identify biomarkers of bronchial inflammation in the saliva of children with asthma through immunoassay and Surface Enhanced Raman Spectroscopy (SERS). We conducted an analytical cross-sectional study in 44 children ages 6-12; the diagnosis of asthma was made according to Global Initiative for Asthma (GINA) standards. The children's saliva was analyzed by immunoassay for the quantification of 37 cytokines, as well as SERS analysis in a confocal Raman microscope at 785 nm. We found a significant association between bronchial obstruction and IL-8 (p = 0.004), IL-10 (p = 0.008) and sCD163 (p = 0.003). The Raman spectra showed significant amplification in the region of 760 to 1750 cm-1. The Principal Component Analysis and Linear Discriminant Analysis (PCA-LDA) method has a sensitivity of 85%, specificity of 82% and an accuracy of 84% for the diagnosis of asthma. These results demonstrate the presence of a subclinical inflammatory state, suggestive of bronchial remodeling in the population studied. The SERS method is a potential tool for identifying bronchial inflammation and its endotype, allowing for a highly sensitive and specific diagnosis.
Collapse
Affiliation(s)
- B N Zamora-Mendoza
- Universidad Autonoma de San Luis Potosi, Facultad de Ciencias Quimicas, Av. Dr. Manuel Nava #6, San Luis Potosí, 78210, Mexico
| | - R Espinosa-Tanguma
- Universidad Autonoma de San Luis Potosi, Facultad de Medicina, Av. Venustiano Carranza #2405, San Luis Potosí, 78210, Mexico
| | - M G Ramírez-Elías
- Universidad Autonoma de San Luis Potosi, Facultad de Ciencias, Av. Chapultepec #1570Privadas del Pedregal, San Luis Potosí, 78290, Mexico
| | - R Cabrera-Alonso
- Universidad Autonoma de San Luis Potosi, Coordinación para la Innovacion y Aplicacion de la Ciencia y la Tecnologia (CIACyT), Av. Sierra Leona #550, San Luis Potosi, 78210, Mexico
| | - G Montero-Moran
- Universidad Autonoma de San Luis Potosi, Facultad de Ciencias Quimicas, Av. Dr. Manuel Nava #6, San Luis Potosí, 78210, Mexico
| | - D Portales-Pérez
- Universidad Autonoma de San Luis Potosi, Facultad de Ciencias Quimicas, Av. Dr. Manuel Nava #6, San Luis Potosí, 78210, Mexico
| | - J A Rosales-Romo
- Servicios de Salud de San Luis Potosi, Hospital General de Soledad de Graciano Sánchez, Prolongación Valentín Amador #1112, Colonia Genovevo Rivas Guillen, Soledad de Graciano Sánchez, San Luis Potosí, 78432, Mexico
| | - J F Gonzalez
- Universidad Autonoma de San Luis Potosi, Coordinación para la Innovacion y Aplicacion de la Ciencia y la Tecnologia (CIACyT), Av. Sierra Leona #550, San Luis Potosi, 78210, Mexico
| | - C Gonzalez
- Universidad Autonoma de San Luis Potosi, Facultad de Ciencias Quimicas, Av. Dr. Manuel Nava #6, San Luis Potosí, 78210, Mexico.
| |
Collapse
|
25
|
Bujok J, Gąsior-Głogowska M, Marszałek M, Trochanowska-Pauk N, Zigo F, Pavľak A, Komorowska M, Walski T. Applicability of FTIR-ATR Method to Measure Carbonyls in Blood Plasma after Physical and Mental Stress. BIOMED RESEARCH INTERNATIONAL 2019; 2019:2181370. [PMID: 31032337 PMCID: PMC6457301 DOI: 10.1155/2019/2181370] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2018] [Accepted: 02/24/2019] [Indexed: 11/17/2022]
Abstract
INTRODUCTION Oxidative stress is a state of imbalance between the production of reactive oxygen species and antioxidant defenses. It results in the oxidation of all cellular elements and, to a large extent, proteins, causing inter alia the formation of carbonyl groups in their structures. The study focused on assessment of changes in the plasma protein-bound carbonyls in police horses after combat training and after rest and the applicability of infrared spectroscopy with a Fourier transform, utilizing the attenuated total reflectance (FTIR-ATR) in detecting plasma protein oxidation. METHODS We evaluated the influence of both the different concentrations of hydrogen peroxide and combat training on protein carbonylation in horse blood plasma. The oxidation of plasma proteins was assessed using a spectrophotometric method based on the carbonyl groups derivatization with 2,4-dinitrophenylhydrazine (DNPH). The measured values were correlated with the carbonyl groups concentrations determined by means of the FTIR-ATR method. RESULTS The linear correlation between the DNPH and FTIR-ATR methods was shown. The concentration of plasma protein-bound carbonyls significantly deceased in police horses after one-day rest when compared to the values measured directly after the combat training (a drop by 23%, p<0.05 and 29%, p<0.01 measured by DNPH and FTIR-ATR methods, respectively). These results were consistent with the proteins phosphorylation analysis. CONCLUSION The FTIR-ATR method may be applied to measure the level of plasma proteins peroxidation.
Collapse
Affiliation(s)
- Jolanta Bujok
- Department of Animal Physiology and Biostructure, Faculty of Veterinary Medicine, Wrocław University of Environmental and Life Sciences, Norwida 31, 50-375 Wrocław, Poland
| | - Marlena Gąsior-Głogowska
- Department of Biomedical Engineering, Faculty of Fundamental Problems of Technology, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
| | - Michał Marszałek
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
| | - Natalia Trochanowska-Pauk
- Department of Biomedical Engineering, Faculty of Fundamental Problems of Technology, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
| | - František Zigo
- Department of Animal Husbandry, University of Veterinary Medicine and Pharmacy in Košice, Komenskeho 73, 041 81 Košice, Slovakia
| | - Alexander Pavľak
- Department of Animal Husbandry, University of Veterinary Medicine and Pharmacy in Košice, Komenskeho 73, 041 81 Košice, Slovakia
| | - Małgorzata Komorowska
- Department of Biomedical Engineering, Faculty of Fundamental Problems of Technology, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
| | - Tomasz Walski
- Department of Biomedical Engineering, Faculty of Fundamental Problems of Technology, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
- Centre for Research in Medical Devices (CÚRAM), National University of Ireland Galway, Biosciences Research Building 118 Corrib Village, Newcastle, Galway, Ireland
| |
Collapse
|
26
|
|
27
|
Redness generation via Maillard reactions of whey protein isolate (WPI) and ascorbic acid (vitamin C) in spray-dried powders. J FOOD ENG 2019. [DOI: 10.1016/j.jfoodeng.2018.09.020] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
|