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Gong S, Pan P, Meng X, Zhang Y, Xu H, Hu H, Cheng X, Yan Q. Integrated Physiologic and Proteomic Analyses Reveal the Molecular Mechanism of Navicula sp. in Response to Ultraviolet Irradiation Stress. Int J Mol Sci 2024; 25:2747. [PMID: 38473996 DOI: 10.3390/ijms25052747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2024] [Revised: 02/20/2024] [Accepted: 02/25/2024] [Indexed: 03/14/2024] Open
Abstract
With the continuous development of space station construction, space ecosystem research has attracted increasing attention. However, the complicated responses of different candidate plants and algae to radiation stress remain unclear. The present study, using integrated physiologic and proteomic analyses, was carried out to reveal the molecular mechanism of Navicula sp. in response to ultraviolet (UV) irradiation stress. Under 12~24 h of high-dose UV irradiation conditions, the contents of chlorophyll and soluble proteins in Navicula sp. cells were significantly higher than those in the control and 4~8 h of low-dose UV irradiation groups. The activity of catalase (CAT) increased with the extension of irradiation time, and the activity of superoxide dismutase (SOD) decreased first and then increased. Furthermore, differential volcano plot analysis of the proteomic data of Navicula sp. samples found only one protein with a significant difference. Differential protein GO analysis unveiled that UV irradiation can activate the antioxidant system of Navicula sp. and further impact photosynthesis by affecting the photoreaction and chlorophyll synthesis of Navicula sp. The most significant differences in KEGG pathway analysis were also associated with photosynthesis. The above results indicate that Navicula sp. has good UV radiation resistance ability by regulating its photosynthetic pigment content, photosynthetic activity, and antioxidant system, making it a potential candidate for the future development of space ecosystems.
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Affiliation(s)
- Siyu Gong
- College of Life Sciences and Bioengineering, School of Physical Science and Engineering, Beijing Jiaotong University, Beijing 100044, China
| | - Pan Pan
- College of Life Sciences and Bioengineering, School of Physical Science and Engineering, Beijing Jiaotong University, Beijing 100044, China
| | - Xiangying Meng
- College of Life Sciences and Bioengineering, School of Physical Science and Engineering, Beijing Jiaotong University, Beijing 100044, China
| | - Yuxin Zhang
- College of Materials Science and Engineering, Chongqing University, Chongqing 400045, China
| | - Hanli Xu
- College of Life Sciences and Bioengineering, School of Physical Science and Engineering, Beijing Jiaotong University, Beijing 100044, China
| | - Honggang Hu
- College of Life Sciences and Bioengineering, School of Physical Science and Engineering, Beijing Jiaotong University, Beijing 100044, China
| | - Xiyu Cheng
- College of Life Sciences and Bioengineering, School of Physical Science and Engineering, Beijing Jiaotong University, Beijing 100044, China
| | - Qiong Yan
- College of Life Sciences and Bioengineering, School of Physical Science and Engineering, Beijing Jiaotong University, Beijing 100044, China
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2
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Poli A, Zanellati A, Piano E, Biagioli F, Coleine C, Nicolosi G, Selbmann L, Isaia M, Prigione V, Varese GC. Cultivable fungal diversity in two karstic caves in Italy: under-investigated habitats as source of putative novel taxa. Sci Rep 2024; 14:4164. [PMID: 38378919 PMCID: PMC10879487 DOI: 10.1038/s41598-024-54548-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Accepted: 02/14/2024] [Indexed: 02/22/2024] Open
Abstract
Microbial diversity of caves is largely understudied and its possible applications are still unknown. Autochthonous fungi, in particular, may have the potential to biomineralize metals and may be used as promising agents for bioremediation of polluted sites; thus, unearthing the fungal diversity in hypogean ecosystems is nowadays of utmost importance. To start addressing this knowledge gap, the cultivable mycobiota of two neighbouring caves-one natural and one exploited for touristic purposes-were characterised and compared by studying fungi isolated from sediments collected at increasing distances from the entrance. Overall, 250 fungal isolates ascribable to 69 taxa (mainly Ascomycota) were found, a high percentage of which was reported in caves for the first time. The sediments of the touristic cave displayed a richer and more diversified community in comparison with the natural one, possibly due to visitors carrying propagules or organic material. Considering that these environments are still poorly explored, chances to detect new fungal lineages are not negligible.
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Grants
- 2017HTXT2R Ministero dell'Istruzione, dell'Università e della Ricerca
- 2017HTXT2R Ministero dell'Istruzione, dell'Università e della Ricerca
- 2017HTXT2R Ministero dell'Istruzione, dell'Università e della Ricerca
- 2017HTXT2R Ministero dell'Istruzione, dell'Università e della Ricerca
- 2017HTXT2R Ministero dell'Istruzione, dell'Università e della Ricerca
- 2017HTXT2R Ministero dell'Istruzione, dell'Università e della Ricerca
- 2017HTXT2R Ministero dell'Istruzione, dell'Università e della Ricerca
- 2017HTXT2R Ministero dell'Istruzione, dell'Università e della Ricerca
- 2017HTXT2R Ministero dell'Istruzione, dell'Università e della Ricerca
- 2017HTXT2R Ministero dell'Istruzione, dell'Università e della Ricerca
- IR0000005 European Commission - NextGenerationEU
- IR0000005 European Commission - NextGenerationEU
- IR0000005 European Commission - NextGenerationEU
- Ministero dell’Istruzione, dell’Università e della Ricerca
- European Commission – NextGenerationEU
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Affiliation(s)
- A Poli
- Department of Life Sciences and Systems Biology, Mycotheca Universitatis Taurinensis, University of Torino, Viale Mattioli 25, 10100, Torino, Italy
| | - A Zanellati
- Department of Life Sciences and Systems Biology, Mycotheca Universitatis Taurinensis, University of Torino, Viale Mattioli 25, 10100, Torino, Italy
| | - E Piano
- Department of Life Sciences and Systems Biology, University of Torino, Via Accademia Albertina 13, 10123, Torino, Italy
| | - F Biagioli
- Department of Ecological and Biological Sciences, University of Tuscia, Largo Dell'Università, 01100, Viterbo, Italy
| | - C Coleine
- Department of Ecological and Biological Sciences, University of Tuscia, Largo Dell'Università, 01100, Viterbo, Italy
| | - G Nicolosi
- Department of Life Sciences and Systems Biology, University of Torino, Via Accademia Albertina 13, 10123, Torino, Italy
| | - L Selbmann
- Department of Ecological and Biological Sciences, University of Tuscia, Largo Dell'Università, 01100, Viterbo, Italy
| | - M Isaia
- Department of Life Sciences and Systems Biology, University of Torino, Via Accademia Albertina 13, 10123, Torino, Italy
| | - V Prigione
- Department of Life Sciences and Systems Biology, Mycotheca Universitatis Taurinensis, University of Torino, Viale Mattioli 25, 10100, Torino, Italy.
| | - G C Varese
- Department of Life Sciences and Systems Biology, Mycotheca Universitatis Taurinensis, University of Torino, Viale Mattioli 25, 10100, Torino, Italy
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3
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Favero-Longo SE, Matteucci E, Voyron S, Iacomussi P, Ruggiero MG. Lithobiontic recolonization following cleaning and preservative treatments on the rock engravings of Valle Camonica, Italy: A 54-months monitoring. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 901:165885. [PMID: 37524193 DOI: 10.1016/j.scitotenv.2023.165885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 07/03/2023] [Accepted: 07/27/2023] [Indexed: 08/02/2023]
Abstract
Both the indirect control of microclimate conditions and the direct application of preservative products to contrast stone bioreceptivity may contribute to limit lithobiontic recolonization of cultural heritage surfaces after cleaning interventions. However, the priority deserved by these different preventive approaches has still been poorly evaluated, particularly in outdoor environments. This work dealt with the engraved sandstone surfaces of the National Park of Rock Engravings of Naquane (Italy, UNESCO WHS), widely colonized by lichens, mosses and a dark cyanobacterial biofilm, and thus requiring frequent cleaning interventions to preserve their legibility for visitors and scholars. In particular, post-cleaning recolonization by the different lithobionts was seasonally monitored along 54 months in different zones of an engraved outcrop, primarily differing in levels of shading, on parcels exposed to nine different conservative treatments. These included (or not) a pre-cleaning devitalization of lithobionts and the post-cleaning application of biocidal (benzalkonium chloride, plant essential oils, usnic acid) and other restoration products (nanocrystalline anatase, polysiloxane-based water repellent, ethyl-silicate-based consolidant). The combination of surface image analyses, fluorimetric and colorimetric measurements showed that mosses and the cyanobacterial biofilm rapidly recolonized all the parcels in the more shaded zone, irrespective of conservative treatments. In the other areas, recolonization significantly differed depending on the treatment. The post-cleaning application of biocides determined the best results through two vegetative seasons, but only nanocrystalline anatase and the polysiloxane-based water repellent maintained the surfaces lighter than uncleaned controls along the whole monitoring period. Recolonization primarily proceeded by the uncleaned surfaces surrounding the parcels and, at least in the examined case of lichens, did not show substantial shifts in community composition, although some nitrophytic species increased their frequency. In conclusion, the effectiveness of preservative treatments to prevent a rapid recolonization of heritage stone surfaces appeared subordinate to the presence of microenvironmental conditions less favourable to lithobionts.
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Affiliation(s)
- Sergio E Favero-Longo
- Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Viale Mattioli 25, 10125 Torino, Italy.
| | - Enrica Matteucci
- Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Viale Mattioli 25, 10125 Torino, Italy; Fondazione Centro per la Conservazione e Restauro "La Venaria Reale", via XX settembre 18, 10078 Venaria Reale, TO, Italy
| | - Samuele Voyron
- Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Viale Mattioli 25, 10125 Torino, Italy
| | - Paola Iacomussi
- Istituto Nazionale di Ricerca Metrologica, Divisione Ottica, Strada delle Cacce 91, 10135 Torino, Italy
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Tsouggou N, Oikonomou A, Papadimitriou K, Skandamis PN. 16S and 18S rDNA Amplicon Sequencing Analysis of Aesthetically Problematic Microbial Mats on the Walls of the Petralona Cave: The Use of Essential Oils as a Cleaning Method. Microorganisms 2023; 11:2681. [PMID: 38004693 PMCID: PMC10673238 DOI: 10.3390/microorganisms11112681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Revised: 10/25/2023] [Accepted: 10/26/2023] [Indexed: 11/26/2023] Open
Abstract
The presence of microbial communities on cave walls and speleothems is an issue that requires attention. Traditional cleaning methods using water, brushes, and steam can spread the infection and cause damage to the cave structures, while chemical agents can lead to the formation of toxic compounds and damage the cave walls. Essential oils (EOs) have shown promising results in disrupting the cell membrane of bacteria and affecting their membrane permeability. In this study, we identified the microorganisms forming unwanted microbial communities on the walls and speleothems of Petralona Cave using 16S and 18S rDNA amplicon sequencing approaches and evaluated the efficacy of EOs in reducing the ATP levels of these ecosystems. The samples exhibited a variety of both prokaryotic and eukaryotic microorganisms, including Proteobacteria, Actinobacteria, Bacteroidetes, Chloroflexi, Firmicutes, the SAR supergroup, Opisthokonta, Excavata, Archaeplastida, and Amoebozoa. These phyla are often found in various habitats, including caves, and contribute to the ecological intricacy of cave ecosystems. In terms of the order and genus taxonomy, the identified biota showed abundances that varied significantly among the samples. Functional predictions were also conducted to estimate the differences in expressed genes among the samples. Oregano EO was found to reduce ATP levels by 87% and 46% for black and green spots, respectively. Consecutive spraying with cinnamon EO further reduced ATP levels, with reductions of 89% for black and 88% for green spots. The application of a mixture solution caused a significant reduction up to 96% in ATP levels of both areas. Our results indicate that EOs could be a promising solution for the treatment of microbial communities on cave walls and speleothems.
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Affiliation(s)
- Natalia Tsouggou
- Laboratory of Food Quality Control & Hygiene, Department of Food Science & Human Nutrition, Agricultural University of Athens, Iera Odos 75, 11855 Athens, Greece; (N.T.); (P.N.S.)
| | - Alexandra Oikonomou
- Ephorate of Palaeoanthropology and Speleology, Hellenic Republic Ministry of Culture and Sports, Ardittou 34b, 11636 Athens, Greece;
| | - Konstantinos Papadimitriou
- Laboratory of Food Quality Control & Hygiene, Department of Food Science & Human Nutrition, Agricultural University of Athens, Iera Odos 75, 11855 Athens, Greece; (N.T.); (P.N.S.)
| | - Panagiotis N. Skandamis
- Laboratory of Food Quality Control & Hygiene, Department of Food Science & Human Nutrition, Agricultural University of Athens, Iera Odos 75, 11855 Athens, Greece; (N.T.); (P.N.S.)
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5
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Tomazin R, Simčič S, Stopinšek S, Kopitar AN, Kukec A, Matos T, Mulec J. Effects of Anthropogenic Disturbance and Seasonal Variation on Aerobiota in Highly Visited Show Caves in Slovenia. Microorganisms 2023; 11:2381. [PMID: 37894039 PMCID: PMC10608856 DOI: 10.3390/microorganisms11102381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 09/15/2023] [Accepted: 09/22/2023] [Indexed: 10/29/2023] Open
Abstract
Aerosols in caves are natural tracers and, together with climatic parameters, provide a detailed insight into atmospheric conditions, responses to climatic changes and anthropogenic influences in caves. Microbiological air monitoring in show caves is becoming increasingly useful to understand changes in cave ecosystems and to implement and review measures for sustainable cave use and tourism development. In 2017 and 2018, air along tourist trails in caves Postojnska jama and Škocjanske jame (Slovenia) was sampled before and after tourist visits. Samples were analysed using culture-dependent methods, flow cytometry, detection of β-D-glucan and lipopolysaccharide and compared with CO2 and temperature data to measure anthropogenic influences and seasonality on aerobiota. While the presence of tourists significantly increased concentrations of airborne microorganisms (p < 0.05), β-D-glucan and CO2 did not show such a trend and were more dependent on seasonal changes. Locally, concentrations of cultivable microorganisms above 1000 CFU/m3 were detected, which could have negative effects on the autochthonous microbiota and possibly on human health. A mixture of bacteria typically associated with humans was found in the air and identified with MALDI-TOF MS. Using MALDI-TOF MS, we achieved a 69.6% success rate in identification. Micrococcus luteus, Streptococcus mitis, Staphylococcus epidermidis and Moraxella spp. were recognized as good indicators of cave anthropisation.
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Affiliation(s)
- Rok Tomazin
- Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, SI-1000 Ljubljana, Slovenia; (R.T.); (S.S.); (A.N.K.); (T.M.)
| | - Saša Simčič
- Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, SI-1000 Ljubljana, Slovenia; (R.T.); (S.S.); (A.N.K.); (T.M.)
| | - Sanja Stopinšek
- Health Centre Hrastnik, Novi dom 11, SI-1430 Hrastnik, Slovenia;
| | - Andreja Nataša Kopitar
- Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, SI-1000 Ljubljana, Slovenia; (R.T.); (S.S.); (A.N.K.); (T.M.)
| | - Andreja Kukec
- Department of Public Health, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, SI-1000 Ljubljana, Slovenia;
| | - Tadeja Matos
- Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, SI-1000 Ljubljana, Slovenia; (R.T.); (S.S.); (A.N.K.); (T.M.)
| | - Janez Mulec
- Karst Research Institute, Research Centre of the Slovenian Academy of Sciences and Arts, Titov trg 2, SI-6230 Postojna, Slovenia
- UNESCO Chair on Karst Education, University of Nova Gorica, SI-5271 Vipava, Slovenia
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6
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Piano E, Biagioli F, Nicolosi G, Coleine C, Poli A, Prigione V, Zanellati A, Addesso R, Varese GC, Selbmann L, Isaia M. Tourism affects microbial assemblages in show caves. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 871:162106. [PMID: 36764528 DOI: 10.1016/j.scitotenv.2023.162106] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Revised: 01/30/2023] [Accepted: 02/04/2023] [Indexed: 06/18/2023]
Abstract
Anthropogenic disturbance on natural ecosystems is growing in frequency and magnitude affecting all ecosystems components. Understanding the response of different types of biocoenosis to human disturbance is urgently needed and it can be achieved by adopting a metacommunity framework. With the aid of advanced molecular techniques, we investigated sediment communities of Fungi, Bacteria and Archaea in four Italian show caves, aiming to disentangle the effects induced by tourism on their diversity and to highlight changes in the driving forces that shape their community composition. We modelled diversity measures against proxies of tourism pressure. With this approach we demonstrate that the cave tourism has a direct effect on the community of Bacteria and an indirect influence on Fungi and Archaea. By analysing the main driving forces influencing the community composition of the three microbial groups, we highlighted that stochastic factors override dispersal-related processes and environmental selection in show caves compared to undisturbed areas. Thanks to this approach, we provide new perspectives on the dynamics of microbial communities under human disturbance suggesting that a proper understanding of the underlying selective mechanisms requires a comprehensive and multi-taxonomic approach.
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Affiliation(s)
- Elena Piano
- Department of Life Sciences and Systems Biology, University of Torino, Via Accademia Albertina 13, 10123 Torino, Italy
| | - Federico Biagioli
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell'Università, 01100 Viterbo, Italy
| | - Giuseppe Nicolosi
- Department of Life Sciences and Systems Biology, University of Torino, Via Accademia Albertina 13, 10123 Torino, Italy
| | - Claudia Coleine
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell'Università, 01100 Viterbo, Italy
| | - Anna Poli
- Mycotheca Universitatis Taurinensis, Department of Life Sciences and Systems Biology, University of Torino, Viale Mattioli 25, 10125 Torino, Italy
| | - Valeria Prigione
- Mycotheca Universitatis Taurinensis, Department of Life Sciences and Systems Biology, University of Torino, Viale Mattioli 25, 10125 Torino, Italy
| | - Andrea Zanellati
- Mycotheca Universitatis Taurinensis, Department of Life Sciences and Systems Biology, University of Torino, Viale Mattioli 25, 10125 Torino, Italy
| | - Rosangela Addesso
- Department of Chemistry and Biology "Adolfo Zambelli", University of Salerno, Via Giovanni Paolo II 132, 84084 Fisciano, SA, Italy
| | - Giovanna Cristina Varese
- Mycotheca Universitatis Taurinensis, Department of Life Sciences and Systems Biology, University of Torino, Viale Mattioli 25, 10125 Torino, Italy
| | - Laura Selbmann
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell'Università, 01100 Viterbo, Italy
| | - Marco Isaia
- Department of Life Sciences and Systems Biology, University of Torino, Via Accademia Albertina 13, 10123 Torino, Italy.
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7
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Microbial diversity and proxy species for human impact in Italian karst caves. Sci Rep 2023; 13:689. [PMID: 36639707 PMCID: PMC9839721 DOI: 10.1038/s41598-022-26511-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Accepted: 12/15/2022] [Indexed: 01/15/2023] Open
Abstract
To date, the highly adapted cave microbial communities are challenged by the expanding anthropization of these subterranean habitats. Although recent advances in characterizing show-caves microbiome composition and functionality, the anthropic effect on promoting the establishment, or reducing the presence of specific microbial guilds has never been studied in detail. This work aims to investigate the whole microbiome (Fungi, Algae, Bacteria and Archaea) of four Italian show-caves, displaying different environmental and geo-morphological conditions and one recently discovered natural cave to highlight potential human-induced microbial traits alterations. Results indicate how show-caves share common microbial traits in contrast to the natural one; the first are characterized by microorganisms related to outdoor environment and/or capable of exploiting extra inputs of organic matter eventually supplied by tourist flows (i.e. Chaetomium and Phoma for fungi and Pseudomonas for bacteria). Yet, variation in microalgae assemblage composition was reported in show-caves, probably related to the effect of the artificial lighting. This study provides insights into the potential microbiome cave contamination by human-related bacteria (e.g. Lactobacillus and Staphylococcus) and commensal/opportunistic human associated fungi (e.g. Candida) and dermatophytes. This work is critical to untangle caves microbiome towards management and conservation of these fragile ecosystems.
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8
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Mammola S, Meierhofer MB, Borges PA, Colado R, Culver DC, Deharveng L, Delić T, Di Lorenzo T, Dražina T, Ferreira RL, Fiasca B, Fišer C, Galassi DMP, Garzoli L, Gerovasileiou V, Griebler C, Halse S, Howarth FG, Isaia M, Johnson JS, Komerički A, Martínez A, Milano F, Moldovan OT, Nanni V, Nicolosi G, Niemiller ML, Pallarés S, Pavlek M, Piano E, Pipan T, Sanchez‐Fernandez D, Santangeli A, Schmidt SI, Wynne JJ, Zagmajster M, Zakšek V, Cardoso P. Towards evidence-based conservation of subterranean ecosystems. Biol Rev Camb Philos Soc 2022; 97:1476-1510. [PMID: 35315207 PMCID: PMC9545027 DOI: 10.1111/brv.12851] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Revised: 02/22/2022] [Accepted: 03/01/2022] [Indexed: 12/18/2022]
Abstract
Subterranean ecosystems are among the most widespread environments on Earth, yet we still have poor knowledge of their biodiversity. To raise awareness of subterranean ecosystems, the essential services they provide, and their unique conservation challenges, 2021 and 2022 were designated International Years of Caves and Karst. As these ecosystems have traditionally been overlooked in global conservation agendas and multilateral agreements, a quantitative assessment of solution-based approaches to safeguard subterranean biota and associated habitats is timely. This assessment allows researchers and practitioners to understand the progress made and research needs in subterranean ecology and management. We conducted a systematic review of peer-reviewed and grey literature focused on subterranean ecosystems globally (terrestrial, freshwater, and saltwater systems), to quantify the available evidence-base for the effectiveness of conservation interventions. We selected 708 publications from the years 1964 to 2021 that discussed, recommended, or implemented 1,954 conservation interventions in subterranean ecosystems. We noted a steep increase in the number of studies from the 2000s while, surprisingly, the proportion of studies quantifying the impact of conservation interventions has steadily and significantly decreased in recent years. The effectiveness of 31% of conservation interventions has been tested statistically. We further highlight that 64% of the reported research occurred in the Palearctic and Nearctic biogeographic regions. Assessments of the effectiveness of conservation interventions were heavily biased towards indirect measures (monitoring and risk assessment), a limited sample of organisms (mostly arthropods and bats), and more accessible systems (terrestrial caves). Our results indicate that most conservation science in the field of subterranean biology does not apply a rigorous quantitative approach, resulting in sparse evidence for the effectiveness of interventions. This raises the important question of how to make conservation efforts more feasible to implement, cost-effective, and long-lasting. Although there is no single remedy, we propose a suite of potential solutions to focus our efforts better towards increasing statistical testing and stress the importance of standardising study reporting to facilitate meta-analytical exercises. We also provide a database summarising the available literature, which will help to build quantitative knowledge about interventions likely to yield the greatest impacts depending upon the subterranean species and habitats of interest. We view this as a starting point to shift away from the widespread tendency of recommending conservation interventions based on anecdotal and expert-based information rather than scientific evidence, without quantitatively testing their effectiveness.
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Affiliation(s)
- Stefano Mammola
- Laboratory for Integrative Biodiversity Research (LIBRe)Finnish Museum of Natural History (LUOMUS), University of HelsinkiPohjoinen Rautatiekatu 13Helsinki00100Finland
- Molecular Ecology Group (dark‐MEG)Water Research Institute (IRSA), National Research Council (CNR)Largo Tonolli, 50Verbania‐Pallanza28922Italy
| | - Melissa B. Meierhofer
- BatLab Finland, Finnish Museum of Natural History Luomus (LUOMUS)University of HelsinkiPohjoinen Rautatiekatu 13Helsinki00100Finland
| | - Paulo A.V. Borges
- cE3c—Centre for Ecology, Evolution and Environmental Changes / Azorean Biodiversity Group / CHANGE – Global Change and Sustainability InstituteUniversity of Azores, Faculty of Agrarian Sciences and Environment (FCAA), Rua Capitão João d'ÀvilaPico da Urze, 9700‐042 Angra do HeroísmoAzoresPortugal
| | - Raquel Colado
- Departament of Ecology and HidrologyUniversity of MurciaMurcia30100Spain
| | - David C. Culver
- Department of Environmental ScienceAmerican University4400 Massachusetts Avenue, N.WWashingtonDC20016U.S.A.
| | - Louis Deharveng
- Institut de Systématique, Evolution, Biodiversité (ISYEB), CNRS UMR 7205, MNHN, UPMC, EPHEMuseum National d'Histoire Naturelle, Sorbonne UniversitéParisFrance
| | - Teo Delić
- SubBio Lab, Department of Biology, Biotechnical FacultyUniversity of LjubljanaJamnikarjeva 101Ljubljana1000Slovenia
| | - Tiziana Di Lorenzo
- Research Institute on Terrestrial Ecosystems (IRET‐CNR), National Research CouncilVia Madonna del Piano 10, 50019 Sesto FiorentinoFlorenceItaly
| | - Tvrtko Dražina
- Division of Zoology, Department of BiologyFaculty of Science, University of ZagrebRooseveltov Trg 6Zagreb10000Croatia
- Croatian Biospeleological SocietyRooseveltov Trg 6Zagreb10000Croatia
| | - Rodrigo L. Ferreira
- Center of Studies in Subterranean Biology, Biology Department, Federal University of LavrasCampus universitário s/n, Aquenta SolLavrasMG37200‐900Brazil
| | - Barbara Fiasca
- Department of Life, Health and Environmental SciencesUniversity of L'AquilaVia Vetoio 1, CoppitoL'Aquila67100Italy
| | - Cene Fišer
- SubBio Lab, Department of Biology, Biotechnical FacultyUniversity of LjubljanaJamnikarjeva 101Ljubljana1000Slovenia
| | - Diana M. P. Galassi
- Department of Life, Health and Environmental SciencesUniversity of L'AquilaVia Vetoio 1, CoppitoL'Aquila67100Italy
| | - Laura Garzoli
- Molecular Ecology Group (dark‐MEG)Water Research Institute (IRSA), National Research Council (CNR)Largo Tonolli, 50Verbania‐Pallanza28922Italy
| | - Vasilis Gerovasileiou
- Department of Environment, Faculty of EnvironmentIonian University, M. Minotou‐Giannopoulou strPanagoulaZakynthos29100Greece
- Hellenic Centre for Marine Research (HCMR), Institute of Marine BiologyBiotechnology and Aquaculture (IMBBC)Thalassocosmos, GournesCrete71500Greece
| | - Christian Griebler
- Department of Functional and Evolutionary Ecology, Division of LimnologyUniversity of ViennaDjerassiplatz 1Vienna1030Austria
| | - Stuart Halse
- Bennelongia Environmental Consultants5 Bishop StreetJolimontWA6014Australia
| | | | - Marco Isaia
- Department of Life Sciences and Systems BiologyUniversity of TurinVia Accademia Albertina, 13TorinoI‐10123Italy
| | - Joseph S. Johnson
- Department of Biological SciencesOhio University57 Oxbow TrailAthensOH45701U.S.A.
| | - Ana Komerički
- Croatian Biospeleological SocietyRooseveltov Trg 6Zagreb10000Croatia
| | - Alejandro Martínez
- Molecular Ecology Group (dark‐MEG)Water Research Institute (IRSA), National Research Council (CNR)Largo Tonolli, 50Verbania‐Pallanza28922Italy
| | - Filippo Milano
- Department of Life Sciences and Systems BiologyUniversity of TurinVia Accademia Albertina, 13TorinoI‐10123Italy
| | - Oana T. Moldovan
- Emil Racovita Institute of SpeleologyClinicilor 5Cluj‐Napoca400006Romania
- Romanian Institute of Science and TechnologySaturn 24‐26Cluj‐Napoca400504Romania
| | - Veronica Nanni
- Department of Life Sciences and Systems BiologyUniversity of TurinVia Accademia Albertina, 13TorinoI‐10123Italy
| | - Giuseppe Nicolosi
- Department of Life Sciences and Systems BiologyUniversity of TurinVia Accademia Albertina, 13TorinoI‐10123Italy
| | - Matthew L. Niemiller
- Department of Biological SciencesThe University of Alabama in Huntsville301 Sparkman Drive NWHuntsvilleAL35899U.S.A.
| | - Susana Pallarés
- Departamento de Biogeografía y Cambio GlobalMuseo Nacional de Ciencias Naturales, CSICCalle de José Gutiérrez Abascal 2Madrid28006Spain
| | - Martina Pavlek
- Croatian Biospeleological SocietyRooseveltov Trg 6Zagreb10000Croatia
- Ruđer Bošković InstituteBijenička cesta 54Zagreb10000Croatia
| | - Elena Piano
- Department of Life Sciences and Systems BiologyUniversity of TurinVia Accademia Albertina, 13TorinoI‐10123Italy
| | - Tanja Pipan
- ZRC SAZUKarst Research InstituteNovi trg 2Ljubljana1000Slovenia
- UNESCO Chair on Karst EducationUniversity of Nova GoricaGlavni trg 8Vipava5271Slovenia
| | | | - Andrea Santangeli
- Research Centre for Ecological Change, Organismal and Evolutionary Biology Research ProgrammeUniversity of HelsinkiViikinkaari 1Helsinki00014Finland
| | - Susanne I. Schmidt
- Institute of Hydrobiology, Biology Centre CASNa Sádkách 702/7České Budějovice370 05Czech Republic
- Department of Lake ResearchHelmholtz Centre for Environmental ResearchBrückstraße 3aMagdeburg39114Germany
| | - J. Judson Wynne
- Department of Biological SciencesCenter for Adaptable Western Landscapes, Box 5640, Northern Arizona UniversityFlagstaffAZ86011U.S.A.
| | - Maja Zagmajster
- SubBio Lab, Department of Biology, Biotechnical FacultyUniversity of LjubljanaJamnikarjeva 101Ljubljana1000Slovenia
| | - Valerija Zakšek
- SubBio Lab, Department of Biology, Biotechnical FacultyUniversity of LjubljanaJamnikarjeva 101Ljubljana1000Slovenia
| | - Pedro Cardoso
- Laboratory for Integrative Biodiversity Research (LIBRe)Finnish Museum of Natural History (LUOMUS), University of HelsinkiPohjoinen Rautatiekatu 13Helsinki00100Finland
- cE3c—Centre for Ecology, Evolution and Environmental Changes / Azorean Biodiversity Group / CHANGE – Global Change and Sustainability InstituteUniversity of Azores, Faculty of Agrarian Sciences and Environment (FCAA), Rua Capitão João d'ÀvilaPico da Urze, 9700‐042 Angra do HeroísmoAzoresPortugal
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9
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Bontemps Z, Alonso L, Pommier T, Hugoni M, Moënne-Loccoz Y. Microbial ecology of tourist Paleolithic caves. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 816:151492. [PMID: 34793801 DOI: 10.1016/j.scitotenv.2021.151492] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Revised: 10/19/2021] [Accepted: 11/03/2021] [Indexed: 06/13/2023]
Abstract
Microorganisms colonize caves extensively, and in caves open for tourism they may cause alterations on wall surfaces. This is a major concern in caves displaying Paleolithic art, which is usually fragile and may be irremediably damaged by microbial alterations. Therefore, many caves were closed for preservation purposes, e.g. Lascaux (France), Altamira (Spain), while others were never opened to the public to avoid microbial contamination, e.g. Chauvet Cave (France), etc. The recent development of high-throughput sequencing technologies allowed several descriptions of cave microbial diversity and prompted the writing of this review, which focuses on the cave microbiome for the three domains of life (Bacteria, Archaea, microeukaryotes), the impact of tourism-related anthropization on microorganisms in Paleolithic caves, and the development of microbial alterations on the walls of these caves. This review shows that the microbial phyla prevalent in pristine caves are similar to those evidenced in water, soil, plant and metazoan microbiomes, but specificities at lower taxonomic levels remain to be clarified. Most of the data relates to Bacteria and Fungi, while other microeukaryotes and Archaea are poorly documented. Tourism may cause shifts in the microbiota of Paleolithic caves, but larger-scale investigation are required as these shifts may differ from one cave to the next. Finally, different types of alterations can occur in caves, especially in Paleolithic caves. Many microorganisms potentially involved have been identified, but diversity analyses of these alterations have not always included a comparison with neighboring unaltered zones as controls, making such associations uncertain. It is expected that omics technologies will also allow a better understanding of the functional diversities of the cave microbiome. This will be needed to decipher microbiome dynamics in response to touristic frequentation, to guide cave management, and to identify the most appropriate reclamation approaches to mitigate microbial alterations in tourist Paleolithic caves.
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Affiliation(s)
- Zélia Bontemps
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, F-69622 Villeurbanne, France
| | - Lise Alonso
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, F-69622 Villeurbanne, France
| | - Thomas Pommier
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, F-69622 Villeurbanne, France
| | - Mylène Hugoni
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, F-69622 Villeurbanne, France
| | - Yvan Moënne-Loccoz
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, F-69622 Villeurbanne, France.
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10
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Into the Unknown: Microbial Communities in Caves, Their Role, and Potential Use. Microorganisms 2022; 10:microorganisms10020222. [PMID: 35208677 PMCID: PMC8877592 DOI: 10.3390/microorganisms10020222] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Revised: 01/10/2022] [Accepted: 01/15/2022] [Indexed: 02/05/2023] Open
Abstract
Caves have been an item of amateur and professional exploration for many years. Research on the karst caves has revealed great diversity of bacteria, algae, and fungi living on stone walls and speleothems, in mud puddles or sediments. They have become the source of interest for various research groups including geologists, chemists, ecologists, or microbiologists. The adaptations of cave-dwelling organisms applied to their survival are complex and some of their properties show potential to be used in various areas of human life. Secondary metabolites produced by cave’s bacteria show strong antimicrobial, anti-inflammatory, or anticancer properties. Furthermore, bacteria that can induce mineral precipitation could be used in the construction industry and for neutralization of radioisotopes. In this review we focus on bacteria and algae present in cave ecosystems, their role in shaping such specific environment, and their biotechnological and medical potential.
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11
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Luo X, Zhang B, Lu Y, Mei Y, Shen L. Advances in application of ultraviolet irradiation for biofilm control in water and wastewater infrastructure. JOURNAL OF HAZARDOUS MATERIALS 2022; 421:126682. [PMID: 34388918 DOI: 10.1016/j.jhazmat.2021.126682] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Revised: 07/15/2021] [Accepted: 07/16/2021] [Indexed: 05/26/2023]
Abstract
Biofilms are ubiquitous in aquatic environment. While so far, most of the ultraviolet (UV) disinfection studies focus on planktonic bacteria, and only limited attention has been given to UV irradiation on biofilms. To enrich this knowledge, the present paper reviews the up-to-date studies about applying UV to control biofilms in water and wastewater infrastructure. The development of UV light sources from the conventional mercury lamp to the light emitting diode (LED), and the resistance mechanisms of biofilms to UV are summarized, respectively. Then the feasibility to control biofilms with UV is discussed in terms of three technical routes: causing biofilm slough, inhibiting biofilm formation, and inactivating bacteria in the established biofilm. A comprehensive evaluation of the biofilm-targeted UV technologies currently used or potentially useful in water industry is provided as well, after comparative analyses on single/combined wavelengths, continuous/pulsed irradiation, and instant/chronic disinfection effects. UV LEDs are emerging as competitive light sources because of advantages such as possible selection of wavelengths, adjustable emitting mode and the designable configuration. They still, however, face challenges arising from the low wall plug efficiency and power output. At last, the implementation of the UV-based advanced oxidation processes in controlling biofilms on artificial surfaces is overviewed and their synergistic mechanisms are proposed, which further enlightens the prospective of UV in dealing with the biofilm issue in water infrastructure.
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Affiliation(s)
- Xueru Luo
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, The Key Lab for Synthetic Biotechnology of Xiamen City, Xiamen University, Xiamen 361005, China
| | - Baoping Zhang
- Department of Electronic Engineering, Laboratory of Micro/Nano-Optoelectronics, Xiamen University, Xiamen, Fujian 361005, China.
| | - Yinghua Lu
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, The Key Lab for Synthetic Biotechnology of Xiamen City, Xiamen University, Xiamen 361005, China
| | - Yang Mei
- Department of Electronic Engineering, Laboratory of Micro/Nano-Optoelectronics, Xiamen University, Xiamen, Fujian 361005, China
| | - Liang Shen
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, The Key Lab for Synthetic Biotechnology of Xiamen City, Xiamen University, Xiamen 361005, China.
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12
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Nowicka-Krawczyk P, Komar M, Gutarowska B. Towards understanding the link between the deterioration of building materials and the nature of aerophytic green algae. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 802:149856. [PMID: 34454144 DOI: 10.1016/j.scitotenv.2021.149856] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Revised: 08/17/2021] [Accepted: 08/19/2021] [Indexed: 06/13/2023]
Abstract
The gradual degradation of technical materials by bacteria, cyanobacteria and fungi, is of great economic and social significance. In temperate climates, microbial colonization is associated with phototrophic eukaryotes, predominantly aerial green algae. However, these phototrophs are able to colonize most substrates in all terrestrial environments, regardless he geographical area. As little is known of the life processes of green algae, it is widely believed that their impact on materials is purely aesthetic. Most studies on the deterioration of building materials examine both algae and cyanobacteria and propose various methods, mainly conservation practices, to halt the causes and effects of algal colonization. However, to fully comprehend the phenomenon of biodeterioration by green algae, it is essential to understand both the causes and effects of their activities, as their life processes have considerable influence on changes of technical state of building materials. Aerophytic green algae possess various cellular adaptations and life mechanisms to survive and successfully develop in the harsh terrestrial environment. In response to desiccation, UV radiation and high/low temperature fluctuation they form endo- and epilithic biofilms, produce various protective biomolecules and extracellular matrices, and change the volume of cells. Due to their adaptation mechanisms and wide ecological tolerance, green algae undoubtedly have a high potential to accelerate the degradation of building materials. This article reviews the current state of knowledge regarding the mechanisms of biodeterioration, examines the role played by green algae as a result of their adaptation to a terrestrial environment, presents methods that can be used to prevent the development of green algal biofilms and indicate future prospects in the assessment of algal deterioration studies.
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Affiliation(s)
- Paulina Nowicka-Krawczyk
- Department of Algology and Mycology, Faculty of Biology and Environmental Protection, University of Łódź, Banacha street 12/16, 90-237 Łódź, Poland.
| | - Michał Komar
- Department of Environmental Biotechnology, Faculty of Biotechnology and Food Sciences, Łódź University of Technology, Wólczańska 171/173 street, 90-924 Łódź, Poland.
| | - Beata Gutarowska
- Department of Environmental Biotechnology, Faculty of Biotechnology and Food Sciences, Łódź University of Technology, Wólczańska 171/173 street, 90-924 Łódź, Poland.
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13
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Modulating lighting regime favours a sustainable use of show caves: A case study in NW-Italy. J Nat Conserv 2021. [DOI: 10.1016/j.jnc.2021.126075] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Lighting Effects on the Development and Diversity of Photosynthetic Biofilm Communities in Carlsbad Cavern, New Mexico. Appl Environ Microbiol 2021; 87:AEM.02695-20. [PMID: 33452019 DOI: 10.1128/aem.02695-20] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Accepted: 12/23/2020] [Indexed: 12/22/2022] Open
Abstract
Photosynthetic cave communities ("lampenflora") proliferate in Carlsbad Cavern and other show caves worldwide due to artificial lighting. These biofilms mar the esthetics and can degrade underlying cave surfaces. The National Park Service recently modernized the lighting in Carlsbad Cavern to a light-emitting diode (LED) system that allows adjustment of the color temperature and intensity. We hypothesized that lowering the color temperature would reduce photopigment development. We therefore assessed lampenflora responses to changes in lighting by monitoring photosynthetic communities over the course of a year. We measured photopigments using reflected-light spectrophotometric observations and analyzed microbial community composition with 16S and 18S rRNA gene amplicon sequencing. Reflected-light spectrophotometry revealed that photosynthetic biofilm development is affected by lighting intensity, color temperature, substrate type, and cleaning of the substrate. Gene sequencing showed that the most abundant phototrophs were Cyanobacteria and members of the algal phyla Chlorophyta and Ochrophyta At the end of the study, visible growth of lampenflora was seen at all sites. At sites that had no established biofilm at the start of the study period, Cyanobacteria became abundant and outpaced an increase in eukaryotic algae. Microbial diversity also increased over time at these sites, suggesting a possible pattern of early colonization and succession. Bacterial community structure showed significant effects of all variables: color temperature, light intensity, substrate type, site, and previous cleaning of the substrate. These findings provide fundamental information that can inform management practices; they suggest that altering lighting conditions alone may be insufficient to prevent lampenflora growth.IMPORTANCE Artificial lighting in caves visited by tourists ("show caves") can stimulate photosynthetic algae and cyanobacteria, called "lampenflora," which are unsightly and damage speleothems and other cave surfaces. The most common mitigation strategy employs bleach, but altering intensities and wavelengths of light might be effective and less harsh. Carlsbad Cavern in New Mexico, a U.S. National Park and UNESCO World Heritage Site, has visible lampenflora despite adjustment of LED lamps to decrease the energetic blue light. This study characterized the lampenflora communities and tested the effects of color temperature, light intensity, rock or sediment texture, and time on lampenflora development. DNA amplicon sequence data show a variety of algae and cyanobacteria and also heterotrophic bacteria. This study reveals microbial dynamics during colonization of artificially lit surfaces and indicates that while lowering the color temperature may have an effect, management of lampenflora will likely require additional chemical or UV treatment.
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15
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Pfendler S, Einhorn O, Alaoui-Sossé L, Bousta F, Alaoui-Sossé B, Aleya L. Factors inducing bryophyte growth on prehistoric pigments and effect of UV-C treatment. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:2987-2994. [PMID: 32901409 DOI: 10.1007/s11356-020-10681-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Accepted: 08/30/2020] [Indexed: 06/11/2023]
Abstract
In La Glacière cave (France), the touristic activity has been conducted to an environmental parameter change that has led to photosynthetic organism proliferation (microalgae, diatoms, cyanobacteria, bryophytes). The present study is focused on bryophyte development occurring in the show cave that was responsible of limestone biodeterioration. In order to understand the colonization process of limestone, we have maintained limestone blocks under optimal Lampenflora growth conditions. Moreover, some limestone blocks were painted with several pigments that were used in the prehistory (e.g., red ocher, bone char). Microorganisms and bryophyte growth were monitored during 1 year, and then, the block samples were treated using UV-C light (254 nm). Thus, obtained results were compared with in situ treatment in La Glacière cave. Results have showed dense bryophyte propagation on the several blocks. However, the growth rate was correlated with the chemical composition of the pigment. In fact, the presence of some chemical elements such as As, Cr, Ti, and Co contributed to reduce bryophyte growth. Finally, moss treatment using UV-C light has demonstrated high efficiency under in situ condition, while a fast recolonization has been observed for samples maintained in laboratory. This difference was explained by the high bryophyte density under laboratory conditions that make UV-C light penetration difficult.
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Affiliation(s)
- Stéphane Pfendler
- University of Lyon, UJM-Saint-Etienne, CNRS, EVS-ISTHME UMR 5600, F-42023, Saint-Etienne, France.
| | - Olympe Einhorn
- Laboratoire Chrono-Environnement - UMR 6249, Université de Bourgogne Franche-Comté, 16, route de Gray, 25 000, Besançon, France
| | - Laurence Alaoui-Sossé
- Laboratoire Chrono-Environnement - UMR 6249, Université de Bourgogne Franche-Comté, 16, route de Gray, 25 000, Besançon, France
| | - Faisl Bousta
- Laboratoire de Recherche des Monuments Historiques, USR 3224, Champs-Sur-Marne, France
| | - Badr Alaoui-Sossé
- Laboratoire Chrono-Environnement - UMR 6249, Université de Bourgogne Franche-Comté, 16, route de Gray, 25 000, Besançon, France
| | - Lotfi Aleya
- Laboratoire Chrono-Environnement - UMR 6249, Université de Bourgogne Franche-Comté, 16, route de Gray, 25 000, Besançon, France
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16
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UV-C Irradiation as a Tool to Reduce Biofilm Growth on Pompeii Wall Paintings. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:ijerph17228392. [PMID: 33202735 PMCID: PMC7696093 DOI: 10.3390/ijerph17228392] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Revised: 11/03/2020] [Accepted: 11/10/2020] [Indexed: 11/17/2022]
Abstract
This study focuses on the experimentation of a method based on the use of UV-C irradiation to eliminate the biofilms present in a tomb located in the necropolis of Porta Nocera, in Pompeii. For this study, the autotrophic component of the biofilm was isolated in the laboratory, while, contemporarily, the characterization of the composition of the pigments of the frescoes took place on original fragments, which had already detached from the tomb and were examined in situ. These preliminary analyses were necessary for the recreation of test samples in the laboratory, which closely matched the original surfaces. Artificial biofilms were used for experimental exposure to UV-C radiation. The exposure to UV-C radiation was carried out at different distances for a fixed time interval. The effectiveness of the biocidal action was assessed by employing optical microscopy techniques, through a careful visual assessment of the area occupied by the biofilm on the different test samples, using a photographic survey, as well as by means of colorimetric measurements using spectrometric techniques. In order to obtain an additional parameter to evaluate the death rate of microorganism cultures exposed to the UV-C radiation, the concentrations of the photosynthetic pigments were also measured by spectrophotometry. Results showed that biofilms were completely eradicated by radiation, and no change in pigment color was observed.
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17
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The Control of Cultural Heritage Microbial Deterioration. Microorganisms 2020; 8:microorganisms8101542. [PMID: 33036341 PMCID: PMC7600914 DOI: 10.3390/microorganisms8101542] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Revised: 10/02/2020] [Accepted: 10/04/2020] [Indexed: 11/24/2022] Open
Abstract
The microbial deterioration of cultural heritage includes physical and chemical damage as well as aesthetic alteration. With the technological advancement, a plethora of techniques for removing unwanted microorganisms have opened up new opportunities for microbiologists and conservators. This article reviews the most applied, up-to-date, and sustainable techniques developed for the control of cultural heritage microbial deterioration presenting noteworthy case studies. These techniques include chemical methods, i.e., traditional biocides and nanoparticles; physical methods, such as mechanical removal, UV irradiation, gamma radiation, laser cleaning, heat shocking, microwaves, and dry ice treatment; and biological methods, such as natural molecules with biocidal activity, enzymes, and microorganisms. The application of control systems requires the comprehension of their behavior toward the unwanted microorganisms and possible interactions with the heritage materials. This overview shows also the control methods drawbacks for the purpose of creating awareness in selecting the most suitable technique or combination of techniques.
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18
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Cailhol D, Ciadamidaro L, Dupuy D, Allegra S, Girardot F, Pfendler S. Fungal and bacterial outbreak in the wine vinification area in the Saint-Marcel show cave. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 733:138756. [PMID: 32442874 DOI: 10.1016/j.scitotenv.2020.138756] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Revised: 04/14/2020] [Accepted: 04/15/2020] [Indexed: 06/11/2023]
Abstract
In the Saint-Marcel cave (France), wood barrels and thousands of bottles containing red wine were stored for vinification. After storage began, a fungal and bacterial outbreak occurred, and the area was invaded by numerous types of mold colonizing the cave ceilings and all objects related to human activities (the stairwell and oenological materials). In this study, using the metabarcoding approach, we have studied the microbial outbreak and have linked the identified microorganisms to oenological activity. Both 16S and ITS primers were used to sequence the samples collected from the cave. The results showed that the dominant microorganisms proliferating in the cave were related to wine vinification. For instance, Zasmidium cellare, a strain known for living in dark and ethanol-rich environments, was the dominant fungus on the cave stairwell. Furthermore, Guehomyces pullulans, a cold-adapted yeast used for juice clarification, was recorded as the major species on the blackened limestone ceilings. These findings reveal a complex community structure in the studied cave based on the assembly of bacteria and fungi. Finally, our results demonstrate that oenological activities could seriously affect cave preservation, changing the natural microbial communities populating cave environments.
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Affiliation(s)
| | - Lisa Ciadamidaro
- INRA, AgroParisTech, UMR1402 ECOSYS, Ecotoxicology Division, F-78026 Versailles Cedex, France
| | | | - Séverine Allegra
- University of Lyon, UJM-Saint-Etienne, CNRS, EVS-ISTHME UMR 5600, F-42023 Saint-Etienne, France
| | - Françoise Girardot
- University of Lyon, UJM-Saint-Etienne, CNRS, EVS-ISTHME UMR 5600, F-42023 Saint-Etienne, France
| | - Stéphane Pfendler
- University of Lyon, UJM-Saint-Etienne, CNRS, EVS-ISTHME UMR 5600, F-42023 Saint-Etienne, France.
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19
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Guirado E, Ramos-López D, Maldonado A, Moreno-Balcázar J, Calaforra J. Modeling carbon dioxide for show cave conservation. J Nat Conserv 2019. [DOI: 10.1016/j.jnc.2019.03.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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20
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Pfendler S, Karimi B, Alaoui-Sosse L, Bousta F, Alaoui-Sossé B, Abdel-Daim MM, Aleya L. Assessment of fungi proliferation and diversity in cultural heritage: Reactions to UV-C treatment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 647:905-913. [PMID: 30096678 DOI: 10.1016/j.scitotenv.2018.08.089] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2018] [Revised: 08/05/2018] [Accepted: 08/06/2018] [Indexed: 06/08/2023]
Abstract
Fungi are present in natural and non-touristic caves due to the presence of organic matter provided mainly by insects or animals such as bats. In show caves, however, tourist infrastructure and the visitors themselves are an important source of organic matter. In addition, photosynthetic biofilms provide a high amount of carbon and nitrogen sources for fungi. This study was conducted to identify the fungal communities present in caves along with the potential use of UV-C treatment against their proliferation. Thus, fungal communities proliferating in biofilms in six French and Swiss show caves were analyzed using high throughput sequencing. The results show 385 species recorded, some of them previously described in cases of fungal outbreak. This preliminary study also aimed to test the use of UV-C light as an environmentally friendly method to treat fungal proliferation. Six fungal strains, from three different sources (Lascaux cave, La Glacière cave, a church in Vicherey, France), were cultivated in an agar dish. Spores, mycelia and the entire colony were irradiated using several UV-C intensities. Results showed that four of the six fungi spores and mycelium died following a low-intensity UV-C treatment (2 kJ m-2, 160 s), though Ochroconis lascauxensis and Penicillium bilaiae spores showed higher resistance. Finally, it was demonstrated that the fungal colony could resist the UV-C light due to a shadow effect. The structure of the fungal colony was affected from the periphery to its inner part. However, after four 30 kJ m-2 treatments (39 min irradiation) all strains there definitively eradicated. Further studies will be necessary to examine the potential of UV-C light under cave conditions as a preventive and curative treatment.
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Affiliation(s)
- Stéphane Pfendler
- Laboratoire Chrono-Environnement - UMR 6249, Université de Bourgogne Franche-Comté, 16, route de Gray, 25 000 Besançon, France
| | - Battle Karimi
- Agroécologie, AgroSup Dijon, INRA, Université de Bourgogne Franche-Comté, F-21000 Dijon, France
| | - Laurence Alaoui-Sosse
- Laboratoire Chrono-Environnement - UMR 6249, Université de Bourgogne Franche-Comté, 16, route de Gray, 25 000 Besançon, France
| | - Faisl Bousta
- Laboratoire de Recherche des Monuments Historiques - USR 3224, Champs-Sur-Marne, France
| | - Badr Alaoui-Sossé
- Laboratoire Chrono-Environnement - UMR 6249, Université de Bourgogne Franche-Comté, 16, route de Gray, 25 000 Besançon, France
| | - Mohamed M Abdel-Daim
- Yokohama City University Medical Center, 4-57 Urafune-cho, Minami-ku Yokohama, Kanagawa-ken 232-0024, Japan
| | - Lotfi Aleya
- Laboratoire Chrono-Environnement - UMR 6249, Université de Bourgogne Franche-Comté, 16, route de Gray, 25 000 Besançon, France.
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Pozo-Antonio JS, Sanmartín P. Exposure to artificial daylight or UV irradiation (A, B or C) prior to chemical cleaning: an effective combination for removing phototrophs from granite. BIOFOULING 2018; 34:851-869. [PMID: 30392382 DOI: 10.1080/08927014.2018.1512103] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Revised: 06/24/2018] [Accepted: 08/09/2018] [Indexed: 05/22/2023]
Abstract
This study evaluated whether exposing samples of granite colonized by a natural biofilm to artificial daylight or UV-A/B/C irradiation for 48 h enhanced removal of the biofilm with a chemical product previously approved for conservation of monuments by the European Biocide Directive. Rodas granite, which is commonly found in stone-built heritage monuments in Galicia (NW Spain), was naturally colonized by a sub-aerial biofilm. The efficacy of the cleaning method was evaluated relative to uncolonized surfaces and colonized control samples without previous irradiation, treated by dry-brushing or with benzalkonium chloride. The effect of UV irradiation in the combined treatment was evident, as comparable cleaning levels were not reached in the controls. Although the biofilm was not totally removed by any of the treatments, UV-B irradiation followed by benzalkonium chloride was potentially useful for cleaning stone, with results comparable to those achieved by UV-C irradiation, which is known to have germicidal effects.
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Affiliation(s)
- J Santiago Pozo-Antonio
- a Departamento de Enxeñaría de Recursos Naturais e Medio Ambiente , Escola de Enxeñaría de Minas e Enerxía, Universidade de Vigo , Vigo , Spain
| | - Patricia Sanmartín
- b Departamento de Edafoloxía e Química Agrícola, Facultade de Farmacia , Universidade de Santiago de Compostela , Santiago de Compostela , Spain
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Zhu Y, Tu X, Chai XS, Wei Q, Guo L. Biological activities and nitrogen and phosphorus removal during the anabaena flos-aquae biofilm growth using different nutrient form. BIORESOURCE TECHNOLOGY 2018; 251:7-12. [PMID: 29253782 DOI: 10.1016/j.biortech.2017.12.003] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2017] [Revised: 11/30/2017] [Accepted: 12/02/2017] [Indexed: 06/07/2023]
Abstract
This work investigated the biological activities and nitrogen and phosphorus removal during the anabaena flos-aquae biofilm growth on the polyvinyl chloride (PVC) carriers, in different nutrient form mediums. The study showed that the production of dehydrogenase activity (DHA) and extracellular polymeric substances (EPS) can reach 40.4 g/(h·m2) and 115 × 10-2 g/m2 in an 11-day period, respectively, indicating that the anabaena flos-aquae biofilm had high biological activities. The results showed that the nitrogen and phosphorus removal reached 94.9 and 96.8%, respectively, in the ammonium form nitrogen group; while 97.7% of phosphorus were removed in the orthophosphate form phosphorous group. A comparison study was conducted and results showed that the present anabaena flos-aquae based biofilm provided a better removal of nitrogen and phosphorus than the other microalgae biofilms.
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Affiliation(s)
- Yuxuan Zhu
- School of Resources, Environment and Materials, Guangxi University, Nanning 530004, China
| | - Xiaojie Tu
- School of Resources, Environment and Materials, Guangxi University, Nanning 530004, China
| | - Xin-Sheng Chai
- State Key Laboratory of Pulp and Paper Engineering, South China University of Technology, Guangzhou 510006, China
| | - Qun Wei
- School of Resources, Environment and Materials, Guangxi University, Nanning 530004, China.
| | - Lina Guo
- School of Resources, Environment and Materials, Guangxi University, Nanning 530004, China
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23
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Pfendler S, Karimi B, Maron PA, Ciadamidaro L, Valot B, Bousta F, Alaoui-Sosse L, Alaoui-Sosse B, Aleya L. Biofilm biodiversity in French and Swiss show caves using the metabarcoding approach: First data. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 615:1207-1217. [PMID: 29751426 DOI: 10.1016/j.scitotenv.2017.10.054] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2017] [Revised: 10/06/2017] [Accepted: 10/07/2017] [Indexed: 06/08/2023]
Abstract
In recent decades, show caves have begun to suffer from microorganism proliferation due to artificial lighting installations for touristic activity. In addition to the aesthetic problem, light encourages microorganisms that are responsible for physical and chemical degradation of limestone walls, speleothems and prehistoric paintings of cultural value. Microorganisms have previously been described by microscopy or culture-dependent methods, but data provided by new generation sequencing are rare. The authors identified, for the first time, microorganisms proliferating in one Swiss and in four French show caves using three different primers. The results showed that both photosynthetic and non-photosynthetic bacteria were the dominant taxa present in biofilms. Microalgae were heavily represented by the Trebouxiophyceae, Eustigmatophyceae and Chlorophyceae groups. Twelve diatoms were also recorded, with dominance of Syntrichia sp. (96.1%). Fungi were predominantly represented by Ascomycota, Zygomycota and Basidiomycota, fully half of the sampled biofilms where Fungi were detected. Comparing microbial communities from bleach-treated caves to those in untreated caves showed no significant difference except for a low-level change in the abundance of certain taxa. These findings provided by Illumina sequencing reveal a complex community structure in the 5 caves based on the assembly of bacteria, cyanobacteria, algae, diatoms, fungi and mosses.
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Affiliation(s)
- Stéphane Pfendler
- Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, Besançon, France
| | - Battle Karimi
- Institut National de Recherche Agronomique (INRA), UMR1347 Agroécologie, BP 86510, F-21000 Dijon, France
| | - Pierre-Alain Maron
- Institut National de Recherche Agronomique (INRA), UMR1347 Agroécologie, BP 86510, F-21000 Dijon, France
| | - Lisa Ciadamidaro
- Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, Besançon, France
| | - Benoît Valot
- Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, Besançon, France
| | - Faisl Bousta
- Laboratoire de Recherche des Monuments Historiques (LRMH), CRC-USR 3224, Champs-Sur-Marne, France
| | - Laurence Alaoui-Sosse
- Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, Besançon, France
| | - Badr Alaoui-Sosse
- Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, Besançon, France
| | - Lotfi Aleya
- Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, Besançon, France.
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Evolutionarily Distant Streptophyta Respond Differently to Genotoxic Stress. Genes (Basel) 2017; 8:genes8110331. [PMID: 29149093 PMCID: PMC5704244 DOI: 10.3390/genes8110331] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2017] [Revised: 11/10/2017] [Accepted: 11/14/2017] [Indexed: 11/16/2022] Open
Abstract
Research in algae usually focuses on the description and characterization of morpho-and phenotype as a result of adaptation to a particular habitat and its conditions. To better understand the evolution of lineages we characterized responses of filamentous streptophyte green algae of the genera Klebsormidium and Zygnema, and of a land plant-the moss Physcomitrellapatens-to genotoxic stress that might be relevant to their environment. We studied the induction and repair of DNA double strand breaks (DSBs) elicited by the radiomimetic drug bleomycin, DNA single strand breaks (SSB) as consequence of base modification by the alkylation agent methyl methanesulfonate (MMS) and of ultra violet (UV)-induced photo-dimers, because the mode of action of these three genotoxic agents is well understood. We show that the Klebsormidium and Physcomitrella are similarly sensitive to introduced DNA lesions and have similar rates of DSBs repair. In contrast, less DNA damage and higher repair rate of DSBs was detected in Zygnema, suggesting different mechanisms of maintaining genome integrity in response to genotoxic stress. Nevertheless, contrary to fewer detected lesions is Zygnema more sensitive to genotoxic treatment than Klebsormidium and Physcomitrella.
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Pfendler S, Einhorn O, Karimi B, Bousta F, Cailhol D, Alaoui-Sosse L, Alaoui-Sosse B, Aleya L. UV-C as an efficient means to combat biofilm formation in show caves: evidence from the La Glacière Cave (France) and laboratory experiments. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:24611-24623. [PMID: 28913680 DOI: 10.1007/s11356-017-0143-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2017] [Accepted: 09/07/2017] [Indexed: 06/07/2023]
Abstract
Ultra-violet C (UV-C) treatment is commonly used in sterilization processes in industry, laboratories, and hospitals, showing its efficacy against microorganisms such as bacteria, algae, or fungi. In this study, we have eradicated for the first time all proliferating biofilms present in a show cave (the La Glacière Cave, Chaux-lès-Passavant, France). Colorimetric measurements of irradiated biofilms were then monitored for 21 months. To understand the importance of exposition of algae to light just after UV radiation, similar tests were carried out in laboratory conditions. Since UV-C can be deleterious for biofilm support, especially parietal painting, we investigated their effects on prehistoric pigment. Results showed complete eradication of cave biofilms with no algae proliferation observed after 21 months. Moreover, quantum yield results showed a decrease directly after UV-C treatment, indicating inhibition of algae photosynthesis. Furthermore, no changes in pigment color nor in chemical and crystalline properties has been demonstrated. The present findings demonstrate that the UV-C method can be considered environmentally friendly and the best alternative to chemicals. This inexpensive and easily implemented method is advantageous for cave owners and managers.
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Affiliation(s)
- Stéphane Pfendler
- Laboratoire Chrono-Environnement - UMR CNRS 6249, Université de Bourgogne Franche-Comté, Besançon, France
| | - Olympe Einhorn
- Laboratoire Chrono-Environnement - UMR CNRS 6249, Université de Bourgogne Franche-Comté, Besançon, France
| | - Battle Karimi
- Institut National de Recherche Agronomique (INRA), UMR1347 Agroécologie, BP 86510, 21000, Dijon, France
| | - Faisl Bousta
- Centre de Recherche sur la Conservation, Laboratoire de recherche des monuments historiques, USR 3224, Champs-Sur-Marne, Paris, France
| | - Didier Cailhol
- Laboratoire Environnement, Dynamique et Territoires de Montagne (EDYTEM), UMRCNRS5204, Université de Savoie, Le Bourg et du Lac, 73376, Chambery, France
| | - Laurence Alaoui-Sosse
- Laboratoire Chrono-Environnement - UMR CNRS 6249, Université de Bourgogne Franche-Comté, Besançon, France
| | - Badr Alaoui-Sosse
- Laboratoire Chrono-Environnement - UMR CNRS 6249, Université de Bourgogne Franche-Comté, Besançon, France
| | - Lotfi Aleya
- Laboratoire Chrono-Environnement - UMR CNRS 6249, Université de Bourgogne Franche-Comté, Besançon, France.
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Pfendler S, Einhorn O, Bousta F, Khatyr A, Alaoui-Sossé L, Aleya L, Alaoui-Sossé B. UV-C as a means to combat biofilm proliferation on prehistoric paintings: evidence from laboratory experiments. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:21601-21609. [PMID: 28752304 DOI: 10.1007/s11356-017-9791-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2017] [Accepted: 07/19/2017] [Indexed: 06/07/2023]
Abstract
A laboratory investigation of UV-C effects was conducted over a 62-h period: a much higher dose than in classic UV-C treatment was applied to five pigments and two painting binders used by prehistoric humans. Colorimetric parameters were compared to a control to see if UV-C can change pigment and binder color. Infrared spectroscopy, scanning electron microscopy, inductively coupled plasma and X-ray crystallography were also carried out to confirm colorimetric measurement. In order to understand how microorganism may physically deteriorate paintings, limestone blocks were painted and monitored until their complete colonization by algae, cyanobacteria, fungi and/or mosses. The results show that UV-C has no effect on mineral compounds. Conversely, it is noteworthy that binder color changed under both UV-C light conditions as well as in visible light. Concerning painted blocks, a fast proliferation has been observed with deterioration of the paintings. These results show the high importance of treating biofilm as soon as possible. Moreover, these findings may be a promising avenue inducing cave managers to use friendly UV-C light to treat contaminated cave paintings and also in the prevention of biodeterioration by lampenflora.
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Affiliation(s)
- Stéphane Pfendler
- Laboratoire Chrono-Environnement - UMR 6249, Université de Bourgogne Franche-Comté Besançon, Besançon, France
| | - Olympe Einhorn
- Laboratoire Chrono-Environnement - UMR 6249, Université de Bourgogne Franche-Comté Besançon, Besançon, France
| | - Faisl Bousta
- Laboratoire de Recherche des Monuments Historiques - USR 3224, Champs-Sur-Marne, France
| | - Abderrahim Khatyr
- Institut UTINAM UMR CNRS 6213, Université de Franche-Comté, Besançon, France
| | - Laurence Alaoui-Sossé
- Laboratoire Chrono-Environnement - UMR 6249, Université de Bourgogne Franche-Comté Besançon, Besançon, France
| | - Lotfi Aleya
- Laboratoire Chrono-Environnement - UMR 6249, Université de Bourgogne Franche-Comté Besançon, Besançon, France.
| | - Badr Alaoui-Sossé
- Laboratoire Chrono-Environnement - UMR 6249, Université de Bourgogne Franche-Comté Besançon, Besançon, France
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27
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Figueroa FL, Álvarez-Gómez F, del Rosal Y, Celis-Plá PS, González G, Hernández M, Korbee N. In situ photosynthetic yields of cave photoautotrophic biofilms using two different Pulse Amplitude Modulated fluorometers. ALGAL RES 2017. [DOI: 10.1016/j.algal.2016.12.012] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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28
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Borderie F, Denis M, Barani A, Alaoui-Sossé B, Aleya L. Microbial composition and ecological features of phototrophic biofilms proliferating in the Moidons Caves (France): investigation at the single-cell level. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2016; 23:12039-12049. [PMID: 26961535 DOI: 10.1007/s11356-016-6414-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2015] [Accepted: 03/02/2016] [Indexed: 06/05/2023]
Abstract
The authors investigated the microbial composition of phototrophic biofilms proliferating in a show cave using flow cytometry for the first time in such a context. Results are based on several biofilms sampled in the Moidons Caves (France) and concern both heterotrophic prokaryotes and autotrophic microorganisms. Heterotrophic microorganisms with low nucleic acid content were dominant in biofilms, as can be expected from the oligotrophic conditions prevailing within the cave. Analysis of the biofilm autotrophic components revealed the presence of several taxa, particularly the unicellular green algae Chlorella minutissima, specifically well adapted to this cave. Relationships between flow cytometry results and environmental variables determined in the cave were established and discussed so as to better understand biofilm proliferation processes in caves.
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Affiliation(s)
- Fabien Borderie
- Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, 16 route de Gray, Besançon, 25030, France
| | - Michel Denis
- Institut Méditerranéen d'Océanologie (MIO), CNRS/INSU, IRD, Université d'Aix-Marseille, 163 avenue de Luminy, Case 901, Marseille, 13288 Cedex 09, France
| | - Aude Barani
- Institut Méditerranéen d'Océanologie (MIO), CNRS/INSU, IRD, Université d'Aix-Marseille, 163 avenue de Luminy, Case 901, Marseille, 13288 Cedex 09, France
| | - Badr Alaoui-Sossé
- Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, 16 route de Gray, Besançon, 25030, France
| | - Lotfi Aleya
- Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, 16 route de Gray, Besançon, 25030, France.
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Piano E, Bona F, Falasco E, La Morgia V, Badino G, Isaia M. Environmental drivers of phototrophic biofilms in an Alpine show cave (SW-Italian Alps). THE SCIENCE OF THE TOTAL ENVIRONMENT 2015; 536:1007-1018. [PMID: 26112916 DOI: 10.1016/j.scitotenv.2015.05.089] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2014] [Revised: 04/28/2015] [Accepted: 05/21/2015] [Indexed: 06/04/2023]
Abstract
The proliferation of lampenflora is a major threat for the conservation of show caves, since phototrophic organisms cause physical, chemical and aesthetic damage to speleothems. In this paper we examine the environmental factors influencing the presence and the growth of the three main photosynthetic groups composing phototrophic biofilms in the Bossea show cave (SW-Italian Alps). The presence and the primary production of cyanobacteria, diatoms and green algae were detected with BenthoTorch®, an instrument for in situ measurement of chlorophyll a concentration that has never been used before in caves. By means of different techniques of regression analysis, we highlighted the response of the three photosynthetic groups to different environmental factors. Illuminance proved to be the main factor influencing positively both the probability of the presence and the productivity of the three groups. The presence of seeping water on the substrate and the distance from the cave entrance proved to play an important role in determining patterns of colonization. By means of GIS techniques, we provide thematic maps of the cave, providing a representation of pattern of the density of the three examined photosynthetic groups within different areas of the cave. The same approach may apply to other show caves, aiming at providing suggestions for the cave management (i.e. cleaning of the cave walls and positioning of artificial lights) and reduce impact caused by tourism.
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Affiliation(s)
- E Piano
- Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123 Turin, Italy.
| | - F Bona
- Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123 Turin, Italy
| | - E Falasco
- Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123 Turin, Italy
| | - V La Morgia
- ISPRA, via Ca' Fornacetta, 9, 40064 Ozzano dell'Emilia (BO), Italy
| | - G Badino
- Department of Physics, University of Turin, Via P. Giuria 1, 10125 Turin, Italy
| | - M Isaia
- Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123 Turin, Italy
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Borderie F, Alaoui-Sossé B, Aleya L. Heritage materials and biofouling mitigation through UV-C irradiation in show caves: state-of-the-art practices and future challenges. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2015; 22:4144-4172. [PMID: 25548019 DOI: 10.1007/s11356-014-4001-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Accepted: 12/12/2014] [Indexed: 06/04/2023]
Abstract
Biofouling, i.e., colonization of a given substrate by living organisms, has frequently been reported for heritage materials and particularly on stone surfaces such as building facades, historical monuments, and artworks. This also concerns subterranean environments such as show caves, in which the installation of artificial light for tourism has led to the proliferation of phototrophic microorganisms. In Europe nowadays, the use of chemicals in these very sensitive environments is scrutinized and regulated by the European Union. New and environmentally friendly processes must be developed as alternative methods for cave conservation. For several years, the UV irradiation currently used in medical facilities and for the treatment of drinking water has been studied as a new innovative method for the conservation of heritage materials. This paper first presents a review of the biofouling phenomena on stone materials such as building facades and historical monuments. The biological disturbances induced by tourist activity in show caves are then examined, with special attention given to the methods and means to combat them. Thirdly, a general overview is given of the effects of UV-C on living organisms, and especially on photosynthetic microorganisms, through different contexts and studies. Finally, the authors' own experiments and findings are presented concerning the study and use of UV-C irradiation to combat algal proliferation in show caves. Both laboratory and in situ results are summarized and synthesized from their previously published works. The application of UV in caves is discussed and further experiments are proposed to enhance research in this domain.
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Affiliation(s)
- Fabien Borderie
- Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Franche-Comté, 16 route de Gray, 25030, Besançon, France
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