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Chen Z, Liu Z, Song C. Agricultural fertilization near marshes impacts the potential for greenhouse gas emissions from wetland ecosystems by modifying microbial communities. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 930:172400. [PMID: 38631634 DOI: 10.1016/j.scitotenv.2024.172400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Revised: 03/15/2024] [Accepted: 04/09/2024] [Indexed: 04/19/2024]
Abstract
Ensuring agricultural security and preserving the health of wetland ecosystems are crucial concerns facing northeast China. However, the adverse effects of environmental pollution, especially nitrogen (N), caused by prolonged agricultural development on the health of marsh wetlands cannot be systematically recognized. To address this issue, an 18-year trial with four different levels of N application was carried out in a typical area of the Northeast region: 0, 6, 12, and 24 gN·m-2·a-1 (referred to as CK, N6, N12, and N24, respectively) to investigate changes in wetland ecological functioning. The results showed that long-term N input significantly enhanced soil N availability. High-level of N addition (N24) significantly reduced soil bacterial richness in October, while fungal diversity was significantly higher in June than in October for both control and N6 treatments. The main environmental factors affecting microorganisms in June were TN, NH4+, and EC, while bacterial and fungal communities were influenced by TN and Leaf Area Index (LAI), respectively, in October. It was found that the AN16S gene was significantly higher in June than in October, indicating that summer is the critical time for N removal in the wetland. N addition significantly reduced the abundance of the NIFH gene and decreased the N fixation potential of the wetland. In June, low and medium levels of N inputs promoted denitrification processes in the wetland and elevated the wetland N2O emission potential. The abundance of NARG, NIRK, and NOSZ genes decreased significantly in October compared to June, indicating a decrease in the wetland N2O emission potential. Additionally, it was observed that soil methanotrophs were positively affected by NH4+ and TN in October, thereby reducing the wetland CH4 emission potential. Our research provides a systematic understanding of the impact of agricultural N pollution on marsh wetlands, which can inform strategies to protect wetland health.
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Affiliation(s)
- Zhenbo Chen
- Faculty of Infrastructure Engineering, Dalian University of Technology, Dalian 116023, China
| | - Zhihong Liu
- Faculty of Infrastructure Engineering, Dalian University of Technology, Dalian 116023, China.
| | - Changchun Song
- Faculty of Infrastructure Engineering, Dalian University of Technology, Dalian 116023, China.
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Yang R, Ji M, Zhang X, He F, Yu Z, Zeng J, Zhao D. Methane emissions and microbial communities under differing flooding conditions and seasons in littoral wetlands of urban lake. ENVIRONMENTAL RESEARCH 2024; 250:118390. [PMID: 38331139 DOI: 10.1016/j.envres.2024.118390] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Revised: 01/29/2024] [Accepted: 01/30/2024] [Indexed: 02/10/2024]
Abstract
Wetlands are the largest natural sources of methane (CH4) emissions worldwide. Littoral wetlands of urban lakes represent an ecotone between aquatic and terrestrial ecosystems and are strongly influenced by water levels, environmental conditions, and anthropogenic activities. Despite these littoral zones being potential "hotspots" of CH4 emissions, the status of CH4 emissions therein and the role of physicochemical properties and microbial communities regulating these emissions remain unclear. This study compared the CH4 fluxes, physicochemical properties, and CH4-cycling microbial communities (methanogens and methanotrophs) of three zones (a non-flooded supralittoral zone, a semi-flooded eulittoral zone, and a flooded infralittoral zone) in the littoral wetlands of Lake Pipa, Jiangsu Province, China, for two seasons (summer and winter). The eulittoral zone was a CH4 source (median: 11.49 and 0.02 mg m-2 h-1 in summer and winter, respectively), whereas the supralittoral zone acted as a CH4 sink (median: -0.78 and -0.09 mg m-2 h-1 in summer and winter, respectively). The infralittoral zone shifted from CH4 sink to source between the summer (median: -10.65 mg m-2 h-1) and winter (median: 0.11 mg m-2 h-1). The analysis of the functional genes of methanogenesis (mcrA) and methanotrophy (pmoA) and path analysis showed that CH4 fluxes were strongly regulated by biotic factors (abundance of the mcrA gene and alpha diversity of CH4-cycling microbial communities) and abiotic factors (ammonia nitrogen, moisture, and soil organic carbon). In particular, biotic factors had a major influence on the variation in the CH4 flux, whereas abiotic factors had a minor influence. Our findings provide novel insights into the spatial and seasonal variations in CH4-cycling microbial communities and identify the key factors influencing CH4 fluxes in littoral wetlands. These results are important for managing nutrient inputs and regulating the hydrological regimes of urban lakes.
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Affiliation(s)
- Runhan Yang
- Joint International Research Laboratory of Global Change and Water Cycle, the National Key Laboratory of Water Disaster Prevention, Hohai University, Nanjing, 210098, China
| | - Mengting Ji
- Joint International Research Laboratory of Global Change and Water Cycle, the National Key Laboratory of Water Disaster Prevention, Hohai University, Nanjing, 210098, China
| | - Xiaomin Zhang
- Joint International Research Laboratory of Global Change and Water Cycle, the National Key Laboratory of Water Disaster Prevention, Hohai University, Nanjing, 210098, China; State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Fei He
- Joint International Research Laboratory of Global Change and Water Cycle, the National Key Laboratory of Water Disaster Prevention, Hohai University, Nanjing, 210098, China; Ministry of Ecology and Environment, Nanjing Institute of Environment Sciences, Nanjing, 210042, China
| | - Zhongbo Yu
- Joint International Research Laboratory of Global Change and Water Cycle, the National Key Laboratory of Water Disaster Prevention, Hohai University, Nanjing, 210098, China
| | - Jin Zeng
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China; Poyang Lake Wetland Research Station, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Jiujiang, 332899, China
| | - Dayong Zhao
- Joint International Research Laboratory of Global Change and Water Cycle, the National Key Laboratory of Water Disaster Prevention, Hohai University, Nanjing, 210098, China.
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Li J, Chen Y, Ge T, Zhao M, Ge J, Han G. Nitrogen fertilization enhances organic carbon accumulation in topsoil mainly by improving photosynthetic C assimilation in a salt marsh. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 351:119862. [PMID: 38142599 DOI: 10.1016/j.jenvman.2023.119862] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 11/26/2023] [Accepted: 12/12/2023] [Indexed: 12/26/2023]
Abstract
Continuous nitrogen (N) loading alters plant growth and subsequently has the potential to impact soil organic carbon (SOC) accumulation in salt marshes. However, the knowledge gap of photosynthesized carbon (C) allocation in plant-soil-microbial systems hampers the quantification of C fluxes and the clarification of the mechanisms controlling the C budget under N loading in salt marsh ecosystems. To address this, we conducted an N fertilization field observation combined with a 5 h 13C-pulse labeling experiment in a salt marsh dominated by Suaeda. salsa (S. salsa) in the Yellow River Delta (YRD), China. N fertilization increased net 13C assimilation of S. Salsa by 277.97%, which was primarily allocated to aboveground biomass and SOC. However, N fertilization had little effect on 13C allocation to belowground biomass. Correlation analysis showed that 13C incorporation in soil was significantly and linearly correlated with 13C incorporation in shoots rather than in roots both in a 0 N (0 g N m-2 yr-1) and +N (20 g N m-2 yr-1) group. The results suggested that SOC increase under N fertilization was mainly due to an increased C assimilation rate and more efficient downward transfer of photosynthesized C. In addition, N fertilization strongly improved the 13C amounts in the chloroform-labile SOC component by 295.26%. However, the absolute increment of newly fix 13C mainly existed in the form of residual SOC, which had more tendency for burial in the soil. Thus, N fertilization enhanced SOC accumulation although C loss increased via belowground respiration. These results have important implications for predicting the carbon budget under further human-induced N loading.
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Affiliation(s)
- Juanyong Li
- School of Advanced Interdisciplinary Studies, Hunan University of Technology and Business, Changsha, 410205, China
| | - Yawen Chen
- Jiangyou China Sciences Miantou Environmental Technology Co., Ltd, Beijing China Sciences Runyu Environmental Protection Technology Co., Ltd, Mianyang, 621000, China
| | - Tida Ge
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo, 315211, China
| | - Mingliang Zhao
- Key Laboratory of Coastal Zone Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264000, China; University of Chinese Academy of Sciences, Beijing, 100049, China; Yellow River Delta Field Observation and Research Station of Coastal Wetland Ecosystem, Chinese Academy of Sciences, China
| | - Jiaxin Ge
- Key Laboratory of Coastal Zone Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264000, China; School of Resources and Environmental Engineering, Ludong University, Yantai, 264025, China
| | - Guangxuan Han
- Key Laboratory of Coastal Zone Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264000, China; University of Chinese Academy of Sciences, Beijing, 100049, China; Yellow River Delta Field Observation and Research Station of Coastal Wetland Ecosystem, Chinese Academy of Sciences, China.
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Liu X, Hu S, Sun R, Wu Y, Qiao Z, Wang S, Zhang Z, Cui C. Dissolved oxygen disturbs nitrate transformation by modifying microbial community, co-occurrence networks, and functional genes during aerobic-anoxic transition. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 790:148245. [PMID: 34380284 DOI: 10.1016/j.scitotenv.2021.148245] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Revised: 05/28/2021] [Accepted: 05/31/2021] [Indexed: 05/23/2023]
Abstract
No consensus has been achieved among researchers on the effect of dissolved oxygen (DO) on nitrate (NO3--N) transformation and the microbial community, especially during aerobic-anoxic transition. To supplement this knowledge, NO3--N transformation, microbial communities, co-occurrence networks, and functional genes were investigated during aerobic-anoxic transition via microcosm simulation. NO3--N transformation rate in the early stage (DO ≥2 mg/L) was always significantly higher than that in the later stage (DO <2 mg/L) during aerobic-anoxic transition, and NO2--N accumulation was more significant during the anoxic stage, consistent with the result obtained under constant DO conditions. These NO3--N transformation characteristics were not affected by other environmental factors, indicating the important role of DO in NO3--N transformation during aerobic-anoxic transition. Changes in DO provoked significant alterations in microbial diversity and abundance of functional bacteria dominated by Massilia, Bacillus, and Pseudomonas, leading to the variation in NO3--N transformation. Co-occurrence network analysis revealed that NO3--N transformation was performed by the interactions between functional bacteria including symbiotic and competitive relationship. In the presence of oxygen, these interactions accelerated the NO3--N transformation rate, and bacterial metabolization proceeded via increasingly varied pathways including aerobic and anoxic respiration, which was demonstrated through predicted genes. The higher relative abundance of genes narG, narH, and napA suggested the occurrence of coupled aerobic-anoxic denitrification in the early stage. NO3--N transformation rate decreased accompanied by a significant NO2--N accumulation with the weakening of coupled aerobic-anoxic denitrification during aerobic-anoxic transition. Structural equation modeling further demonstrated the relationship between DO and NO3--N transformation. DO affects NO3--N transformation by modifying microbial community, bacterial co-occurrence, and functional genes during aerobic-anoxic transition.
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Affiliation(s)
- Xiaoyan Liu
- School of Chemistry and Chemical Engineering, Northwestern Polytechnical University, Xi'an 710129, China
| | - Sihai Hu
- School of Chemistry and Chemical Engineering, Northwestern Polytechnical University, Xi'an 710129, China
| | - Ran Sun
- School of Chemistry and Chemical Engineering, Northwestern Polytechnical University, Xi'an 710129, China
| | - Yaoguo Wu
- School of Chemistry and Chemical Engineering, Northwestern Polytechnical University, Xi'an 710129, China.
| | - Zixia Qiao
- School of Chemistry and Chemical Engineering, Northwestern Polytechnical University, Xi'an 710129, China
| | - Sichang Wang
- School of Chemistry and Chemical Engineering, Northwestern Polytechnical University, Xi'an 710129, China
| | - Zehong Zhang
- School of Chemistry and Chemical Engineering, Northwestern Polytechnical University, Xi'an 710129, China
| | - Chuwen Cui
- School of Chemistry and Chemical Engineering, Northwestern Polytechnical University, Xi'an 710129, China
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Liu J, Liu F, Yu J, Wang Q, Li Z, Liu K, Xu C, Yu H, Xiao L. Proteomics reveal biomethane production process induced by carbon nanotube. ENVIRONMENTAL RESEARCH 2021; 200:111417. [PMID: 34051197 DOI: 10.1016/j.envres.2021.111417] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 05/11/2021] [Accepted: 05/24/2021] [Indexed: 06/12/2023]
Abstract
Biomethane produced by methanogenic archaea is a main greenhouse resource of terrestrial and marine ecosystems, which strongly affects the global environment change. Conductive materials, especially nano-scale, show considerable intervention on biomethane production potential, but the mechanism is still unclear. Herein, we precisely quantified the absolute abundance of Methanosarcina spp. proteins affected by carbon nanotubes (CNTs) using tandem mass tag (TMT) proteomics technology. Among the 927 detectable proteins, more than three hundred, 304, showed differential expression. Gene Set Enrichment Analysis on KEGG pathways and GO biological processes revealed a trend of decreased protein synthesis induced by CNTs, suggesting these conductive nanomaterials may replace part of the cell structure and function. Interestingly, increased acetoclastic methanogenesis actually came at the expense of reduced protein synthesis in related pathways. CNTs stimulated biomethane production from acetate by stimulating intracellular redox activity and the -COOH oxidation process. These findings enhanced the understanding of the biomethane production process affected by conductive materials.
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Affiliation(s)
- Jian Liu
- Shandong Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou, 253023, PR China
| | - Fanghua Liu
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China
| | - Jiafeng Yu
- Shandong Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou, 253023, PR China.
| | - Quan Wang
- School of Resources and Environmental Engineering, Ludong University, Yantai, 264025, PR China
| | - Zhenkai Li
- School of Resources and Environmental Engineering, Ludong University, Yantai, 264025, PR China
| | - Kui Liu
- Shandong Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou, 253023, PR China
| | - Congmin Xu
- Shandong Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou, 253023, PR China
| | - Hang Yu
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China
| | - Leilei Xiao
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China.
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Wu D, Zhao C, Bai H, Feng F, Sui X, Sun G. Characteristics and metabolic patterns of soil methanogenic archaea communities in the high-latitude natural forested wetlands of China. Ecol Evol 2021; 11:10396-10408. [PMID: 34367583 PMCID: PMC8328403 DOI: 10.1002/ece3.7842] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 04/07/2021] [Accepted: 06/10/2021] [Indexed: 01/12/2023] Open
Abstract
Soil methanogenic microorganisms are one of the primary methane-producing microbes in wetlands. However, we still poorly understand the community characteristic and metabolic patterns of these microorganisms according to vegetation type and seasonal changes. Therefore, to better elucidate the effects of the vegetation type and seasonal factors on the methanogenic community structure and metabolic patterns, we detected the characteristics of the soil methanogenic mcrA gene from three types of natural wetlands in different seasons in the Xiaoxing'an Mountain region, China. The results indicated that the distribution of Methanobacteriaceae (hydrogenotrophic methanogens) was higher in winter, while Methanosarcinaceae and Methanosaetaceae accounted for a higher proportion in summer. Hydrogenotrophic methanogenesis was the dominant trophic pattern in each wetland. The results of principal coordinate analysis and cluster analysis showed that the vegetation type considerably influenced the methanogenic community composition. The methanogenic community structure in the Betula platyphylla-Larix gmelinii wetland was relatively different from the structure of the other two wetland types. Indicator species analysis further demonstrated that the corresponding species of indicator operational taxonomic units from the Alnus sibirica wetland and the Betula ovalifolia wetland were similar. Network analysis showed that cooperative and competitive relationships exist both within and between the same or different trophic methanogens. The core methanogens with higher abundance in each wetland were conducive to the adaptation to environmental disturbances. This information is crucial for the assessment of metabolic patterns of soil methanogenic archaea and future fluxes in the wetlands of the Xiaoxing'an Mountain region given their vulnerability.
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Affiliation(s)
- Di Wu
- Key Laboratory of Saline‐Alkali Vegetation Ecology Restoration (Northeast Forestry University)Ministry of EducationHarbinChina
- College of Life ScienceNortheast Forestry UniversityHarbinChina
| | - Caihong Zhao
- College of Life ScienceNortheast Forestry UniversityHarbinChina
| | - Hui Bai
- Key Laboratory of Fast‐Growing Tree Cultivating of Heilongjiang ProvinceForestry Science Research Institute of Heilongjiang ProvinceHarbinChina
| | - Fujuan Feng
- College of Life ScienceNortheast Forestry UniversityHarbinChina
| | - Xin Sui
- Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold RegionSchool of Life SciencesHeilongjiang UniversityHarbinChina
| | - Guangyu Sun
- Key Laboratory of Saline‐Alkali Vegetation Ecology Restoration (Northeast Forestry University)Ministry of EducationHarbinChina
- College of Life ScienceNortheast Forestry UniversityHarbinChina
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Lu G, Xie B, Cagle GA, Wang X, Han G, Wang X, Hou A, Guan B. Effects of simulated nitrogen deposition on soil microbial community diversity in coastal wetland of the Yellow River Delta. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 757:143825. [PMID: 33280872 DOI: 10.1016/j.scitotenv.2020.143825] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2020] [Revised: 10/19/2020] [Accepted: 11/01/2020] [Indexed: 05/17/2023]
Abstract
Due to the enhancement of human activities on the global scale, the total amount of atmospheric nitrogen (N) deposition and the rate keep increasing, which seriously affect the structure and function of terrestrial ecosystems. In order to study the effects of N deposition on the soil structure and function of coastal saline wetlands, we established a long-term nitrogen deposition simulation platform in 2012 in the Yellow River delta (YRD). Herein, we analyzed the composition and diversity of the soil microbial community under different N deposition treatments (LNN, MNN and HNN, which stand for 50 kg N ha-1 yr-1, 100 kg N ha-1 yr-1, and 200 kg N ha-1 yr-1) and in a water-only control (CK). The results showed that with the increasing level of N deposition, α-diversity (Shannon and Simpson indices) decreased significantly, and the composition of the microbial community changed. At the phylum level, compared with CK, the relative abundance of Chloroflexi increased significantly under the treatment of HNN (P = 0.002), but the relative abundance of Chlorobi (P = 0.013) and Verrucomicrobia (P = 0.035) decreased significantly. At the genus level, compared with CK, the relative abundance of Bacillus (P = 0.01) and Halomonas (P = 0.042) increased significantly with HNN treatment. Bacillus and Nitrococcus showed a significant correlation with soil NH4+-N. The results suggest that the response of microorganisms to N deposition treatments varied by the concentration, and the deposition of a high concentration would increase the nutrients in the soil, but reduce the diversity of soil microorganisms, causing a negative impact on the coastal wetland ecosystem of the YRD.
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Affiliation(s)
- Guanru Lu
- CAS Key Laboratory of Coastal Environmental Process and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Science (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai 264003, China
| | - Baohua Xie
- CAS Key Laboratory of Coastal Environmental Process and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Science (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai 264003, China
| | - Grace A Cagle
- Department of Environmental Sciences, College of the Coast and Environment, Louisiana State University, Baton Rouge, LA 70803, USA
| | - Xuehong Wang
- The Institute for Advanced Study of Coastal Ecology, Ludong University, Yantai 264025, China
| | - Guangxuan Han
- CAS Key Laboratory of Coastal Environmental Process and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Science (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai 264003, China
| | - Xiaojie Wang
- CAS Key Laboratory of Coastal Environmental Process and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Science (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai 264003, China
| | - Aixin Hou
- Department of Environmental Sciences, College of the Coast and Environment, Louisiana State University, Baton Rouge, LA 70803, USA
| | - Bo Guan
- CAS Key Laboratory of Coastal Environmental Process and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Science (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai 264003, China.
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Xiao L, Wang Y, Lichtfouse E, Li Z, Kumar PS, Liu J, Feng D, Yang Q, Liu F. Effect of Antibiotics on the Microbial Efficiency of Anaerobic Digestion of Wastewater: A Review. Front Microbiol 2021; 11:611613. [PMID: 33584577 PMCID: PMC7875893 DOI: 10.3389/fmicb.2020.611613] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Accepted: 12/16/2020] [Indexed: 12/13/2022] Open
Abstract
Recycling waste into new materials and energy is becoming a major challenge in the context of the future circular economy, calling for advanced methods of waste treatment. For instance, microbially-mediated anaerobic digestion is widely used for conversion of sewage sludge into biomethane, fertilizers and other products, yet the efficiency of microbial digestion is limited by the occurrence of antibiotics in sludges, originating from drug consumption for human and animal health. Here we present antibiotic levels in Chinese wastewater, then we review the effects of antibiotics on hydrolysis, acidogenesis and methanogenesis, with focus on macrolides, tetracyclines, β-lactams and antibiotic mixtures. We detail effects of antibiotics on fermentative bacteria and methanogenic archaea. Most results display adverse effects of antibiotics on anaerobic digestion, yet some antibiotics promote hydrolysis, acidogenesis and methanogenesis.
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Affiliation(s)
- Leilei Xiao
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China.,Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Yantai, China
| | - Yiping Wang
- College of Food Science and Engineering, Qingdao Agricultural University, Qingdao, China
| | - Eric Lichtfouse
- Aix-Marseille Univ, CNRS, IRD, INRAE, Coll France, CEREGE, Aix en Provence, France.,State Key Laboratory of Multiphase Flow in Power Engineering, Xi'an Jiaotong University, Xi'an, China
| | - Zhenkai Li
- School of Resources and Environmental Engineering, Ludong University, Yantai, China
| | - P Senthil Kumar
- Department of Chemical Engineering, Sri Sivasubramaniya Nadar College of Engineering, Chennai, India
| | - Jian Liu
- Shandong Key Laboratory of Biophysics, Shandong Engineering Laboratory of Swine Health Big Data and Intelligent Monitoring, Institute of Biophysics, Dezhou University, Dezhou, China
| | - Dawei Feng
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China
| | - Qingli Yang
- College of Food Science and Engineering, Qingdao Agricultural University, Qingdao, China
| | - Fanghua Liu
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China.,Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Yantai, China
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Valenzuela EI, Padilla-Loma C, Gómez-Hernández N, López-Lozano NE, Casas-Flores S, Cervantes FJ. Humic Substances Mediate Anaerobic Methane Oxidation Linked to Nitrous Oxide Reduction in Wetland Sediments. Front Microbiol 2020; 11:587. [PMID: 32351467 PMCID: PMC7174564 DOI: 10.3389/fmicb.2020.00587] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2019] [Accepted: 03/18/2020] [Indexed: 11/13/2022] Open
Abstract
Humic substances are redox-active organic molecules, which play pivotal roles in several biogeochemical cycles due to their electron-transferring capacity involving multiple abiotic and microbial transformations. Based on the redox properties of humic substances, and the metabolic capabilities of microorganisms to reduce and oxidize them, we hypothesized that they could mediate the anaerobic oxidation of methane (AOM) coupled to the reduction of nitrous oxide (N2O) in wetland sediments. This study provides several lines of evidence indicating the coupling between AOM and the reduction of N2O through an extracellular electron transfer mechanism mediated by the redox active functional groups in humic substances (e.g., quinones). We found that the microbiota of a sediment collected from the Sisal wetland (Yucatán Peninsula, southeastern Mexico) was able to reduce N2O (4.6 ± 0.5 μmol N2O g sed.–1 day–1) when reduced humic substances were provided as electron donor in a close stoichiometric relationship. Furthermore, a microbial enrichment derived from the wetland sediment achieved simultaneous 13CH4 oxidation (1.3 ± 0.1 μmol 13CO2 g sed.–1 day–1) and N2O reduction (25.2 ± 0.5 μmol N2O g sed.–1 day–1), which was significantly dependent on the presence of humic substances as an extracellular electron shuttle. Taxonomic characterization based on 16S rRNA gene sequencing revealed Acinetobacter (a ɣ-proteobacterium), the Rice Cluster I from the Methanocellaceae and an uncultured archaeon from the Methanomicrobiaceae family as the microbes potentially involved in AOM linked to N2O reduction mediated by humic substances. The findings reported here suggest that humic substances might play an important role to prevent the emission of greenhouse gases (CH4 and N2O) from wetland sediments. Further efforts to evaluate the feasibility of this novel mechanism under the natural conditions prevailing in ecosystems must be considered in future studies.
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Affiliation(s)
- Edgardo I Valenzuela
- División de Ciencias Ambientales, Instituto Potosino de Investigación Científica y Tecnológica, San Luis Potosí, Mexico
| | - Claudia Padilla-Loma
- División de Ciencias Ambientales, Instituto Potosino de Investigación Científica y Tecnológica, San Luis Potosí, Mexico
| | - Nicolás Gómez-Hernández
- División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, San Luis Potosí, Mexico
| | - Nguyen E López-Lozano
- División de Ciencias Ambientales, Instituto Potosino de Investigación Científica y Tecnológica, San Luis Potosí, Mexico
| | - Sergio Casas-Flores
- División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, San Luis Potosí, Mexico
| | - Francisco J Cervantes
- Laboratory for Research on Advanced Processes for Water Treatment, Engineering Institute, Campus Juriquilla, Universidad Nacional Autónoma de México, Querétaro, Mexico
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10
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Hao Q, Liu F, Zhang Y, Wang O, Xiao L. Methylobacter accounts for strong aerobic methane oxidation in the Yellow River Delta with characteristics of a methane sink during the dry season. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 704:135383. [PMID: 31810682 DOI: 10.1016/j.scitotenv.2019.135383] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2019] [Revised: 11/03/2019] [Accepted: 11/03/2019] [Indexed: 06/10/2023]
Abstract
Recent investigations demonstrate that some coastal wetlands are atmospheric methane sinks, but the regulatory mechanisms are not clear. Here, the main pathway and operator of methane oxidation in the Yellow River Delta (YRD) wetland, a methane source in the wet season but a methane sink in the dry season, were investigated. The anaerobic oxidation of methane (AOM) and aerobic methane oxidation (AMO) abilities of wetland soil were measured, and the microbial community structure was analyzed. The experimental results showed that AMO was active throughout the year. In contrast, AOM was weak and even undetected. The microbial community analysis indicated that Methylomicrobium and Methylobacter potentially scavenged methane in oxic environments. A representative strain of Methylobacter, which was isolated from the soil, presented a strong AMO ability at high concentrations of methane and air. Overall, this study showed that active AMO performing by Methylobacter may account for methane sink in the YRD wetland during the dry season. Our research not only has determined the way in which methane sinks are formed but also identified the potential functional microbes. In particular, we confirmed the function of potential methanotroph by pure culture. Our research provides biological evidence for why some wetlands have methane sink characteristics, which may help to understand the global methane change mechanism.
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Affiliation(s)
- Qinqin Hao
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Laboratory for Marine Biology and Biotechnology, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao, 266237, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Fanghua Liu
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Laboratory for Marine Biology and Biotechnology, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao, 266237, PR China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, 266071, PR China.
| | - Yuechao Zhang
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Laboratory for Marine Biology and Biotechnology, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao, 266237, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Oumei Wang
- Binzhou Medical University, Yantai, 264003, PR China
| | - Leilei Xiao
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, 266071, PR China.
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11
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Effects of Tidal Scenarios on the Methane Emission Dynamics in the Subtropical Tidal Marshes of the Min River Estuary in Southeast China. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2019; 16:ijerph16152790. [PMID: 31387224 PMCID: PMC6695609 DOI: 10.3390/ijerph16152790] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/21/2019] [Revised: 07/23/2019] [Accepted: 08/02/2019] [Indexed: 11/17/2022]
Abstract
In order to accurately estimate the effects of tidal scenarios on the CH4 emission from tidal wetlands, we examined the CH4 effluxes, dissolved CH4 concentrations, and environmental factors (including in situ pH, Eh and electrical conductivity, porewater SO42-, NO3-, and NH4+) during inundation and air-exposure periods in high- and low-tide seasons in the Min River Estuary in southeast China. By applying static and floating chambers, our results showed that the CH4 effluxes during the inundation periods were relatively constant and generally lower than those during the air-exposed periods in both seasons. When compared, the CH4 effluxes during the air-exposed periods were significantly higher in the high-tide season than those in the low-tide season. In contrast, CH4 effluxes during the inundation periods were significantly lower in the high-tide season than those in the low-tide season. During the inundation periods, dissolved CH4 concentrations were inversely proportional to in situ Eh. Under air-exposed conditions, CH4 effluxes were proportional to in situ pH in both seasons, while the dissolved CH4 concentrations were negatively correlated with the porewater SO42- concentrations in both seasons. Our results highlighted that CH4 effluxes were more dynamic between inundation and air-exposure periods compared to low- and high-tide seasons.
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12
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Hu YY, Wu J, Li HZ, Poncin S, Wang KJ, Zuo JE. Study of an enhanced dry anaerobic digestion of swine manure: Performance and microbial community property. BIORESOURCE TECHNOLOGY 2019; 282:353-360. [PMID: 30878887 DOI: 10.1016/j.biortech.2019.03.014] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2019] [Revised: 03/01/2019] [Accepted: 03/04/2019] [Indexed: 06/09/2023]
Abstract
Anaerobic digestion could treat organic wastes and recovery energy. Dry anaerobic digestion had advantages of low heating energy, small digester and less digestate, but its methane production was poor. In this study, an enhanced dry anaerobic digestion of swine manure (thermal treatment + dry anaerobic digestion) was proposed, and its feasibility was investigated via semi-continuous experiment. Results showed that methane production rates were 314.6, 416.0, 298.0 and 69.9 mL CH4/g VS at solid retention time (SRT) of 41 d, 35 d, 29 d and 23 d. Volatile solids (VS) removal rate and methane production rate could reached 71.4% and 416.0 mL CH4/g VS respectively at SRT of 35 d. Methane production rate of the enhanced dry anaerobic digestion was 390% higher than that of dry anaerobic digestion. Microbial study indicated that hydrogenotrophic methanogens predominated with the abundance of 90.2%, while acetoclastic methanogens were not detected. This process was feasible, and was of great practical importance.
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Affiliation(s)
- Yu-Ying Hu
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China; School of Civil Engineering and Architecture, East China Jiao Tong University, Nanchang 330013, China
| | - Jing Wu
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China.
| | - Huai-Zhi Li
- Laboratory of Reactions and Process Engineering, Université de Lorraine, CNRS, 1, rue Grandville, BP 20451, 54001 Nancy Cedex, France
| | - Souhila Poncin
- Laboratory of Reactions and Process Engineering, Université de Lorraine, CNRS, 1, rue Grandville, BP 20451, 54001 Nancy Cedex, France
| | - Kai-Jun Wang
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Jian-E Zuo
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
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13
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Hu YY, Wu J, Li HZ, Poncin S, Wang KJ, Zuo JE. Novel insight into high solid anaerobic digestion of swine manure after thermal treatment: Kinetics and microbial community properties. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2019; 235:169-177. [PMID: 30682669 DOI: 10.1016/j.jenvman.2019.01.047] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Revised: 12/24/2018] [Accepted: 01/16/2019] [Indexed: 06/09/2023]
Abstract
Compared to traditional anaerobic digestion (AD), high solid anaerobic digestion (HSAD) had the advantages of small digester, low heating energy and less digestate. However, the methane production was poor. In our previous study, thermal treatment (70 ± 1 °C, 3 days) without any dilution could satisfactorily enhance the methane production rate of HSAD by up to 39.5%. However, effects of solid content on HSAD after thermal treatment were not yet studied. In this study, HSAD was conducted at 11.7-17.6% solid content, and the control experiment was conducted at low solid content (4.4% solid content). Results showed that HSAD's methane production rate was the highest at 11.7% solid content (158 mL CH4/g VS), and could reach up to 89.2% of that at 4.4% solid content. The utilization of organics was revealed by kinetics analysis that the readily biodegradable organics could be utilized at increasing solid content with decreasing hydrolysis rate. Furthermore, it was notable that methylotrophic methanogens predominated in HSAD with the abundance of 82.6%. This was quite unique from the general belief that AD system was usually dominated by acetoclastic or hydrogenotrophic methanogenic pathways. In this study, the microbial community structure of HSAD after thermal treatment was firstly studied, its unique specific methanogenic pathways was firstly revealed.
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Affiliation(s)
- Yu-Ying Hu
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China; School of Civil Engineering and Architecture, East China Jiao Tong University, Nanchang, 330013, China
| | - Jing Wu
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China.
| | - Huai-Zhi Li
- Laboratory of Reactions and Process Engineering, Université de Lorraine, CNRS, 1, rue Grandville, BP 20451, 54001, Nancy Cedex, France
| | - Souhila Poncin
- Laboratory of Reactions and Process Engineering, Université de Lorraine, CNRS, 1, rue Grandville, BP 20451, 54001, Nancy Cedex, France
| | - Kai-Jun Wang
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China
| | - Jian-E Zuo
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China
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14
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Effects of N Addition Frequency and Quantity on Hydrocotyle vulgaris Growth and Greenhouse Gas Emissions from Wetland Microcosms. SUSTAINABILITY 2019. [DOI: 10.3390/su11061520] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
(1) Background: Increased attention has been paid to atmospheric nitrogen (N) deposition caused by human activities. N deposition quantity has seriously affected plant productivity and greenhouse gas emissions in wetlands, but the effects of N deposition frequency remain unclear. (2) Methods: We assembled microcosms, which contained vegetative individuals (ramets) of Hydrocotyle vulgaris and soil and subjected them to three frequencies (N addition 1, 2, and 14 times during the experimental period) crossed with three quantities (5, 15, and 30 g N m−2 yr−1) for 90 days. (3) Results: The quantity of N addition significantly increased the root, stem biomass, and ramets number of H. vulgaris, but decreased the spike biomass. N addition quantity significantly promoted N2O emission and inhibited CH4 emission but had no significant effect on CO2 emission. The increasing frequency of N addition significantly promoted the root-to-shoot ratio and decreased N2O emission under high N addition quantity. (4) Conclusions: In conclusion, N addition alters the reproductive strategy of H. vulgaris and enhances its invasiveness, promoting N2O emission but not the CO2 equivalent of the H. vulgaris-soil system.
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15
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Li Y, Wu H, Wang J, Cui L, Tian D, Wang J, Zhang X, Yan L, Yan Z, Zhang K, Kang X, Song B. Plant biomass and soil organic carbon are main factors influencing dry-season ecosystem carbon rates in the coastal zone of the Yellow River Delta. PLoS One 2019; 14:e0210768. [PMID: 30640931 PMCID: PMC6331112 DOI: 10.1371/journal.pone.0210768] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2018] [Accepted: 12/31/2018] [Indexed: 12/20/2022] Open
Abstract
Coastal wetlands are considered as a significant sink of global carbon due to their tremendous organic carbon storage. Coastal CO2 and CH4 flux rates play an important role in regulating atmospheric CO2 and CH4 concentrations. However, the relative contributions of vegetation, soil properties, and spatial structure on dry-season ecosystem carbon (C) rates (net ecosystem CO2 exchange, NEE; ecosystem respiration, ER; gross ecosystem productivity, GEP; and CH4) remain unclear at a regional scale. Here, we compared dry-season ecosystem C rates, plant, and soil properties across three vegetation types from 13 locations at a regional scale in the Yellow River Delta (YRD). The results showed that the Phragmites australis stand had the greatest NEE (-1365.4 μmol m-2 s-1), ER (660.2 μmol m-2 s-1), GEP (-2025.5 μmol m-2 s-1) and acted as a CH4 source (0.27 μmol m-2 s-1), whereas the Suaeda heteroptera and Tamarix chinensis stands uptook CH4 (-0.02 to -0.12 μmol m-2 s-1). Stepwise multiple regression analysis demonstrated that plant biomass was the main factor explaining all of the investigated carbon rates (GEP, ER, NEE, and CH4); while soil organic carbon was shown to be the most important for explaining the variability in the processes of carbon release to the atmosphere, i.e., ER and CH4. Variation partitioning results showed that vegetation and soil properties played equally important roles in shaping the pattern of C rates in the YRD. These results provide a better understanding of the link between ecosystem C rates and environmental drivers, and provide a framework to predict regional-scale ecosystem C fluxes under future climate change.
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Affiliation(s)
- Yong Li
- Beijing Key Laboratory of Wetland Services and Restoration, Institute of Wetland Research, Chinese Academy of Forestry, Beijing, China
| | - Haidong Wu
- Beijing Key Laboratory of Wetland Services and Restoration, Institute of Wetland Research, Chinese Academy of Forestry, Beijing, China
| | - Jinzhi Wang
- Beijing Key Laboratory of Wetland Services and Restoration, Institute of Wetland Research, Chinese Academy of Forestry, Beijing, China
| | - Lijuan Cui
- Beijing Key Laboratory of Wetland Services and Restoration, Institute of Wetland Research, Chinese Academy of Forestry, Beijing, China
| | - Dashuan Tian
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China
| | - Jinsong Wang
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China
| | - Xiaodong Zhang
- Beijing Key Laboratory of Wetland Services and Restoration, Institute of Wetland Research, Chinese Academy of Forestry, Beijing, China
| | - Liang Yan
- Beijing Key Laboratory of Wetland Services and Restoration, Institute of Wetland Research, Chinese Academy of Forestry, Beijing, China
| | - Zhongqing Yan
- Beijing Key Laboratory of Wetland Services and Restoration, Institute of Wetland Research, Chinese Academy of Forestry, Beijing, China
| | - Kerou Zhang
- Beijing Key Laboratory of Wetland Services and Restoration, Institute of Wetland Research, Chinese Academy of Forestry, Beijing, China
| | - Xiaoming Kang
- Beijing Key Laboratory of Wetland Services and Restoration, Institute of Wetland Research, Chinese Academy of Forestry, Beijing, China
- * E-mail: (X.K); (B.S.)
| | - Bing Song
- School of Resources and Environmental Engineering, Ludong University, Yantai, China
- * E-mail: (X.K); (B.S.)
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16
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Levy-Booth DJ, Giesbrecht IJW, Kellogg CTE, Heger TJ, D'Amore DV, Keeling PJ, Hallam SJ, Mohn WW. Seasonal and ecohydrological regulation of active microbial populations involved in DOC, CO 2, and CH 4 fluxes in temperate rainforest soil. ISME JOURNAL 2018; 13:950-963. [PMID: 30538276 PMCID: PMC6461783 DOI: 10.1038/s41396-018-0334-3] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Revised: 10/12/2018] [Accepted: 12/03/2018] [Indexed: 11/10/2022]
Abstract
The Pacific coastal temperate rainforest (PCTR) is a global hot-spot for carbon cycling and export. Yet the influence of microorganisms on carbon cycling processes in PCTR soil is poorly characterized. We developed and tested a conceptual model of seasonal microbial carbon cycling in PCTR soil through integration of geochemistry, micro-meteorology, and eukaryotic and prokaryotic ribosomal amplicon (rRNA) sequencing from 216 soil DNA and RNA libraries. Soil moisture and pH increased during the wet season, with significant correlation to net CO2 flux in peat bog and net CH4 flux in bog forest soil. Fungal succession in these sites was characterized by the apparent turnover of Archaeorhizomycetes phylotypes accounting for 41% of ITS libraries. Anaerobic prokaryotes, including Syntrophobacteraceae and Methanomicrobia increased in rRNA libraries during the wet season. Putatively active populations of these phylotypes and their biogeochemical marker genes for sulfate and CH4 cycling, respectively, were positively correlated following rRNA and metatranscriptomic network analysis. The latter phylotype was positively correlated to CH4 fluxes (r = 0.46, p < 0.0001). Phylotype functional assignments were supported by metatranscriptomic analysis. We propose that active microbial populations respond primarily to changes in hydrology, pH, and nutrient availability. The increased microbial carbon export observed over winter may have ramifications for climate-soil feedbacks in the PCTR.
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Affiliation(s)
- David J Levy-Booth
- Department of Microbiology & Immunology, Life Sciences Institute, University of British Columbia, Vancouver, BC, Canada.,Hakai Institute, Tula Foundation, Heriot Bay, BC, Canada
| | - Ian J W Giesbrecht
- Hakai Institute, Tula Foundation, Heriot Bay, BC, Canada.,School of Resource and Environmental Management, Simon Fraser University, Burnaby, BC, Canada
| | - Colleen T E Kellogg
- Department of Microbiology & Immunology, Life Sciences Institute, University of British Columbia, Vancouver, BC, Canada.,Hakai Institute, Tula Foundation, Heriot Bay, BC, Canada
| | - Thierry J Heger
- The University of Applied Sciences Western Switzerland, CHANGINS, Delémont, Switzerland
| | - David V D'Amore
- U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station, Juneau, Alaska, USA
| | - Patrick J Keeling
- Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada
| | - Steven J Hallam
- Department of Microbiology & Immunology, Life Sciences Institute, University of British Columbia, Vancouver, BC, Canada
| | - William W Mohn
- Department of Microbiology & Immunology, Life Sciences Institute, University of British Columbia, Vancouver, BC, Canada.
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17
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Li J, Xiao L, Zheng S, Zhang Y, Luo M, Tong C, Xu H, Tan Y, Liu J, Wang O, Liu F. A new insight into the strategy for methane production affected by conductive carbon cloth in wetland soil: Beneficial to acetoclastic methanogenesis instead of CO 2 reduction. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 643:1024-1030. [PMID: 30189519 DOI: 10.1016/j.scitotenv.2018.06.271] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2018] [Revised: 06/03/2018] [Accepted: 06/22/2018] [Indexed: 06/08/2023]
Abstract
Conductive materials/minerals can promote direct interspecies electron transfer (DIET) between syntrophic bacteria and methanogens in defined co-culture systems and artificial anaerobic digesters; however, little is known about the stimulation strategy of carbon material on methane production in natural environments. Herein, the effect of carbon cloth, as a representative of conductive carbon materials, on methane production with incubated wetland soil was investigated. Carbon cloth significantly promoted methanogenesis. With the application of electrochemical technology, calculation of the apparent electron transfer rate constant showed that carbon cloth significantly increased electron transfer rate (ETR) compared with the control experiment in presence of cotton cloth, from 0.0017 ± 0.0003 to 0.0056 ± 0.0015 s-1. Results obtained from both stable carbon isotope measurements and application of specific inhibitor (CH3F) for acetoclastic methanogenesis indicated that carbon cloth obviously promoted acetoclastic methanogenesis instead of CO2 reduction. High-throughput sequencing showed that methane production may stem from the involvement of Methanosarcina for both treatments. Our findings suggested that conductive carbon material can promote acetoclastic methanogenesis instead of CO2 reduction in a natural environment.
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Affiliation(s)
- Jiajia Li
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Leilei Xiao
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China.
| | - Shiling Zheng
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
| | - Yuechao Zhang
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Min Luo
- Key Laboratory of Humid Subtropical Eco-geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350007, China
| | - Chuan Tong
- Key Laboratory of Humid Subtropical Eco-geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350007, China
| | - Hengduo Xu
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
| | - Yang Tan
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
| | - Juan Liu
- College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Oumei Wang
- Binzhou Medical University, Yantai 264003, China
| | - Fanghua Liu
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China.
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18
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Zhou F, Cui J, Zhou J, Yang J, Li Y, Leng Q, Wang Y, He D, Song L, Gao M, Zeng J, Chan A. Increasing atmospheric deposition nitrogen and ammonium reduced microbial activity and changed the bacterial community composition of red paddy soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 633:776-784. [PMID: 29602116 DOI: 10.1016/j.scitotenv.2018.03.217] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Revised: 03/19/2018] [Accepted: 03/19/2018] [Indexed: 06/08/2023]
Abstract
Atmospheric deposition nitrogen (ADN) increases the N content in soil and subsequently impacts microbial activity of soil. However, the effects of ADN on paddy soil microbial activity have not been well characterized. In this study, we studied how red paddy soil microbial activity responses to different contents of ADN through a 10-months ADN simulation on well managed pot experiments. Results showed that all tested contents of ADN fluxes (27, 55, and 82kgNha-1 when its ratio of NH4+/NO3--N (RN) was 2:1) enhanced the soil enzyme activity and microbial biomass carbon and nitrogen and 27kgNha-1 ADN had maximum effects while comparing with the fertilizer treatment. Generally, increasing of both ADN flux and RN (1:2, 1:1 and 2:1 with the ADN flux of 55kgNha-1) had similar reduced effects on microbial activity. Furthermore, both ADN flux and RN significantly reduced soil bacterial alpha diversity (p<0.05) and altered bacterial community structure (e.g., the relative abundances of genera Dyella and Rhodoblastus affiliated to Proteobacteria increased). Redundancy analysis demonstrated that ADN flux and RN were the main drivers in shaping paddy soil bacteria community. Overall, the results have indicated that increasing ADN flux and ammonium reduced soil microbial activity and changed the soil bacterial community. The finding highlights how paddy soil microbial community response to ADN and provides information for N management in paddy soil.
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Affiliation(s)
- Fengwu Zhou
- College of Resources and Environment, Southwest University, Chongqing 400715, China; Centre of Atmospheric Environment Research, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China
| | - Jian Cui
- Centre of Atmospheric Environment Research, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China; Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.
| | - Jing Zhou
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.
| | - John Yang
- Department of Agriculture and Environmental Science, Lincoln University of Missouri, Jefferson City, MO 65201, USA
| | - Yong Li
- College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Qiangmei Leng
- Centre of Atmospheric Environment Research, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China
| | - Yangqing Wang
- Centre of Atmospheric Environment Research, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China
| | - Dongyi He
- College of Resources and Environment, Southwest University, Chongqing 400715, China; Centre of Atmospheric Environment Research, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China
| | - Liyan Song
- Centre of Atmospheric Environment Research, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China
| | - Min Gao
- Centre of Atmospheric Environment Research, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China
| | - Jun Zeng
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Andy Chan
- Division of Environment, Faculty of Engineering, University of Nottingham Malaysia Campus, Semenyih 43500, Malaysia
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19
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Zhang P, Qu Y, Feng Y, Liu J. The influence of the filtration membrane air-cathode biofilm on wastewater treatment. BIORESOURCE TECHNOLOGY 2018; 256:17-21. [PMID: 29427863 DOI: 10.1016/j.biortech.2018.01.124] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2017] [Revised: 01/19/2018] [Accepted: 01/20/2018] [Indexed: 06/08/2023]
Abstract
The aim of this work was to evaluate the influence of FMA biofilm on nutrient removal through the filtration membrane air-cathode (FMA) replacement test. The result showed that the biofilm accounted for only 29.9% of the COD removal, while 82.9% of the TN removal can be due to the contribution of the FMA biofilm. The microbial community analysis showed that most of the primary genus in the FMA biofilm were TN removal related bacteria. This quantitative determination of the FMA biofilm influence on COD and TN removal would promote the further optimization of the MFC reactor with FMA for higher wastewater treatment efficiency.
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Affiliation(s)
- Peng Zhang
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology. No 73 Huanghe Road, Nangang District, Harbin 150090, China
| | - Youpeng Qu
- School of Life Science and Technology, Harbin Institute of Technology. No. 2 Yikuang Street, Nangang District, Harbin 150080, China
| | - Yujie Feng
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology. No 73 Huanghe Road, Nangang District, Harbin 150090, China
| | - Jia Liu
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology. No 73 Huanghe Road, Nangang District, Harbin 150090, China.
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