Harmful algal blooms significantly reduce the resource use efficiency in a coastal plankton community

Modification of sand filtration system with biochar/zero valent iron-biochar for the simultaneous removal of algal cells and microcystin-LR

High-density algal cells and the released algal toxins during harmful algal blooms cannot be effectively removed by traditional sand filtration systems. In this study, bare sand filtration columns were modified by different mass ratios of biochar (synthesized at different pyrolysis temperatures) and used to simultaneously capture algal cells and microcystins from water. We found that the addition of 2 wt% biochar synthesized at 700℃ could effectively remove Microcystis aeruginosa and Chlorella vulgaris cells under both slow and fast filtration flow conditions, and remove the released microcystin-LR in suspension. Effective removal performance with the coexistence of natural organic matters, in real water samples, during 3 transport-elution cycles and continuous operation for 50 pore volumes was also achieved by biochar-modified filtration system. The high algal adsorption capacity due to the wrinkled structure and the less negative charge of biochar contributed to the enhanced removal performance. Moreover, using zero valent iron (ZVI) loaded biochar to modify sand columns would effectively inactivate and inhibit the regrowth of retained algal cells. The results showed that as one type of inexpensive and readily available bio-materials, biochar/ZVI-biochar could be used to modify the sand filtration system for the effective removal of algal cells and toxins from water.

Dissolved organic carbon and microplastics decrease the biodiversity effect on resource use efficiency of crustacean zooplankton

The relationship between biodiversity and ecosystem functioning has always been the focus of attention in ecology. Although many studies have indicated positive effects of species and functional diversity on ecosystem functioning, our understanding of how the relationships are altered in the face of environmental changes remains limited. In recent years, human activities such as urbanization have led to a significant influx of dissolved organic carbon (DOC) and microplastics into lake ecosystems, which altered the lake's water quality and ecosystem services. Here, by conducting a two-month mesocosm experiment, we found that increasing DOC concentration generally increased the crustacean zooplankton taxonomic species richness, functional richness, resource use efficiency (RUE) and body size. In addition, we found that species richness, functional richness and body size have a positive relationship with zooplankton RUE, indicating higher biodiversity and larger body size are essential for maintaining high ecosystem functions. More importantly, we found that increasing the pressure of DOC and microplastic reduced the biodiversity effect on trophic transfer efficiency, especially for the relationship between functional richness and zooplankton RUE. Our results suggested that biodiversity effects on ecosystem functioning could be probably reduced in the current global environment change context, indicating that we may underestimate the negative impact of diversity loss on ecosystem functions and services. Therefore, more efforts are needed to conserve biodiversity and to maintain the valuable services that the ecosystem provides.

Bacterially mediated phosphorus cycling favors resource use efficiency of phytoplankton communities in a eutrophic plateau lake

Resource use efficiency has garnered much attention globally owing to its linkage with phytoplankton growth and extinction. However, little is known about how microbially mediated phosphorus (P) cycling affects phytoplankton P resource use efficiency (RUEP), especially in eutrophic plateau lakes. Here, we studied the vertical relationship between bacterial communities and phytoplankton RUEP in water profiles from Hongfeng Lake, a eutrophic lake located in the Guizhou Plateau, and further revealed the influence of bacterially mediated endogenous P release on phytoplankton RUEP. Generally, phytoplankton RUEP increased slightly and then decreased toward deep water layers. Compared to dormancy and recovery periods, outbreak period showed higher RUEP in water profiles and bottom waters. The importance of phytoplankton RUEP in the co-occurrence networks progressively increased from dormancy to outbreak periods. Rhodococcus may affect phytoplankton RUEP in water profiles by dissolving Ca-P or polymerizing excess phosphate. Functional composition of P-related genes was largely affected by NH4Cl-Po, BD-TP and BD-Pi in recovery period, and by NaOH-Po in outbreak period. During phytoplankton growth, bacterial P functional genes promote phytoplankton RUEP mainly by regulating Pi solubilization and Po mineralization in surface sediments. Note that ppk could regulate the formation of polyphosphates and thus reduce phytoplankton RUEP. Taken together, our study revealed the relationship between bacterially mediated P cycling and phytoplankton RUEP, which can effectively monitor the potential risk of phytoplankton blooms and improve eutrophication management.

Behavioral responses of copepod Calanus sinicus to bloom-forming algae Prorocentrum donghaiense and Skeletonema costatum

Harmful algal blooms (HABs) severely threaten estuarine and coastal ecosystems in recent decades. The adverse impacts of HABs on zooplankton have been extensively studied, while the strategies employed by zooplankton to cope with HABs remain unclear. The copepod Calanus sinicus is the most dominant zooplankton species in the North Pacific Ocean during spring and early summer, coinciding with frequent blooms of the diatom Skeletonema costatum and the dinoflagellate Prorocentrum donghaiense. To investigate the behavioral responses and energy expenditures of C. sinicus under HAB conditions, we conducted both bottle incubations and high-speed video observations over 24 h. Incubation experiments revealed that the carbon intake rate of C. sinicus when feeding on these harmful algae was significantly lower (1.7 and 0.9 μg C Cop.-1 day-1 from P. donghaiense and S. costatum, respectively) compared to feeding on the healthy prey Platymonas helgolandica, with rates 5-10 times higher. This reduced intake barely met the daily basic metabolic requirements of the copepods. When exposed to P. donghaiense alone, copepods exhibited a pronounced escape-like jumping behavior characterized by high frequency, velocity and straight-line trajectory. In contrast, their swimming behavior differed when exposed to S. costatum alone, with a higher incidence of short, straight swim bouts likely related to the reorientation of diatom chains before ingestion. These specific behaviors were mitigated when alternative food sources were available alongside the harmful algae. We suggest that C. sinicus has evolved adaptive strategies to cope with blooms of P. donghaiense and S. costatum, including selective feeding on other phytoplankton and microzooplankton and either conserving energy by minimizing movement or rapidly escaping from bloom patches when food resources are severely depleted. These adaptive strategies of C. sinicus in HABs, highlighting the potential resilience mechanisms of zooplankton in fluctuating marine ecosystems, which could inform future conservation and management efforts in coastal waters.

Broad active metabolic pathways, autophagy, and antagonistic hormones regulate dinoflagellate cyst dormancy in marine sediments

This work aimed to reveal the molecular machinery regulating the dormancy of dinoflagellate resting cysts buried in marine sediments. Dinoflagellates play pivotal roles in marine ecosystems, particularly as major contributors of harmful algal blooms. Despite vital roles of cysts in blooming cycles and dinoflagellate ecology, the molecular processes controlling cyst dormancy have largely remained unexplored due to technological difficulties. Using DinoSL as a dinoflagellates-specific mRNA "hook" and SMRT sequencing, we analyzed metatranscriptomes of sediment-buried dinoflagellate cyst assemblages. The data show that most major metabolic and regulatory pathways, except photosynthesis, were transcriptionally active. This suggests the crucial importance of broad metabolic pathways in sustaining cyst viability and germination potential. Further expression analyses of 11 genes (relevant to autophagy and phytohormone gibberellin), lysosome/autolysosome staining, and germination experiments revealed vital roles of autophagy in energy generation, nutrient recycling, and of phytohormones abscisic acid/gibberellin in modulating dormancy/germination of resting cysts. Our findings lay a cornerstone for elucidating the molecular machinery regulating dinoflagellate cyst dormancy.

Differentiation of microbial communities in coastal seawater before and during an Akashiwo sanguinea (Dinophyceae) bloom in the urban area of Antofagasta city (northern Chile)

Harmful algal blooms (HABs) are highly relevant for public health, the economy, the ecosystem, and biodiversity stability in southern Chile (40° to 53°S), where they occur regularly and are frequently monitored. However, HAB events and their associated microbes in northern Chile (17° to 30°S) remain unknown and difficult to track due to a lack of monitoring, particularly in urban areas. We investigated changes in microbial communities in coastal seawater before and during an Akashiwo sanguinea bloom (B) at two sampling points in Antofagasta city (23°38'39S, 70°24'39W). Seawater samples (filtered at 1 and 0.2 μm) were collected during distinct bloom phases (control, prebloom, and in-bloom), and 16S and 18S rDNA gene libraries were constructed and analyzed via the DNA metabarcoding technique. Our findings indicate that species diversity within the 16S rDNA-based community was greater during the prebloom phase than during the control and in-bloom phases. Conversely, species diversity within the 18S rDNA-based community was lower during the in-bloom phase than during the control and prebloom phases. Independent of the sampling points and fractions, principal coordinate analysis (PCoA) revealed distinct differences in both the 16S and 18S rDNA-based communities between the analyzed bloom phases. Our analysis further revealed that the 16S rDNA-based community was dominated by the Flavobacteriaceae and Rhodobacteraceae families, whose abundance decreased and increased, respectively, during the bloom. As anticipated, the structure of the 18S rDNA-based community was predominantly governed by the Gymnodiniaceae family, specifically the Akashiwo genus, during the bloom. The differentiation in microbial communities was more pronounced in taxa with low abundances than in the dominant taxa. Additionally, co-occurrence network analysis revealed predominantly positive relationships within the microbial communities, particularly during the bloom event. Our analysis also identified several bacterial genera as keystone taxa within the microbial communities, notably members of Pseudomonadota and Bacteroidota.

Do red tide events promote an increase in zooplankton biodiversity?

Red tides occurring off the southern coast of Korea impact the marine ecosystem and aquaculture industries. Zooplankton are crucial in the food web, connecting primary producers to higher predators and interact diversely with red tide organisms. This study explores dynamics of the zooplankton community over seven years including three red tide and four non-red tide years in Tongyeong using metabarcoding. In non-red tide years, zooplankton diversity showed typical seasonal patterns, increasing from June to early October. However, during red tide years, diversity remained high, with a shift in species composition-decreased Copepoda and increased Branchiopoda, Echinodermata, Malacostraca, and Annelida. Diversity indices were significantly higher in red tide years across all periods except for the richness in "after" that showed an insignificant higher value. The differences in zooplankton assemblages across periods were influenced by surface temperatures and the density of the red tide-causing alga Margalefidinium polykrikoides. Eight species emerged as indicator species and showed direct correlations with M. polykrikoides and among them, seven species were indicator species for red tide occurrence years. The ecological characteristics of M. polykrikoides blooms and their recurrent occurrences over several decades suggest that zooplankton may adapt to the toxins and use these blooms as spawning cues. Overall, this study provides comprehensive understanding on changes in zooplankton communities during red tide events, offering novel insights into their ecology.

Functional trait-based phytoplankton biomass and assemblage analyses in the pre-growing season for comprehensive algal bloom risk assessment

Algal bloom (AB) risk assessment is critical for maintaining ecosystem health and human sustainability. Previous AB risk assessments have focused on the potential occurrence of ABs and related factors in the growing season, whereas their hazards, especially in the pre-growing season, have attracted less attention. Here, we performed a comprehensive AB risk assessment, including water trophic levels, phytoplankton biomass, functional trait-based assemblages, and related environmental factors, in the pre-growing season in Dongting Lake, China. Although mesotrophic water and low phytoplankton biomass suggested low AB potential, toxic taxa, which constituted 13.28% of the phytoplankton biomass, indicated non-negligible AB hazards. NH4+ and water temperature were key factors affecting phytoplankton motility and toxicity. Our study establishes a new paradigm for quantitative AB risk assessment, including both potential AB occurrence and hazards. We emphasize the importance of phytoplankton functional traits for early AB warning and NH4+ reduction for AB control in the pre-growing season.

Experimental warming promotes phytoplankton species sorting towards cyanobacterial blooms and leads to potential changes in ecosystem functioning

A positive feedback loop where climate warming enhances eutrophication and its manifestations (e.g., cyanobacterial blooms) has been recently highlighted, but its consequences for biodiversity and ecosystem functioning are not fully understood. We conducted a highly replicated indoor experiment with a species-rich subtropical freshwater phytoplankton community. The experiment tested the effects of three constant temperature scenarios (17, 20, and 23 °C) under high-nutrient supply conditions on community composition and proxies of ecosystem functioning, namely resource use efficiency (RUE) and CO2 fluxes. After 32 days, warming reduced species richness and promoted different community trajectories leading to a dominance by green algae in the intermediate temperature and by cyanobacteria in the highest temperature treatments. Warming promoted primary production, with a 10-fold increase in the mean biomass of green algae and cyanobacteria. The maximum RUE occurred under the warmest treatment. All treatments showed net CO2 influx, but the magnitude of influx decreased with warming. We experimentally demonstrated direct effects of warming on phytoplankton species sorting, with negative effects on diversity and direct positive effects on cyanobacteria, which could lead to potential changes in ecosystem functioning. Our results suggest potential positive feedback between the phytoplankton blooms and warming, via lower net CO2 sequestration in cyanobacteria-dominated, warmer systems, and add empirical evidence to the need for decreasing the likelihood of cyanobacterial dominance.

Response of planktonic microbial assemblages to disturbance in an urban sub-tropical estuary

Microbes are sensitive indicators of estuarine processes because they respond rapidly to dynamic disturbance events. As most of the world's population lives in urban areas and climate change-related disturbance events are becoming more frequent, estuaries bounded by cities are experiencing increasing stressors, at the same time that their ecosystem services are required more than ever. Here, using a multidisciplinary approach, we determined the response of planktonic microbial assemblages in response to seasonality and a rainfall disturbance in an urban estuary bounded by Australia's largest city, Sydney. We used molecular barcoding (16S, 18S V4 rRNA) and microscopy-based identification to compare microbial assemblages at locations with differing characteristics and urbanisation histories. Across 142 samples, we identified 8,496 unique free-living bacterial zOTUs, 8,175 unique particle associated bacterial zOTUs, and 1,920 unique microbial eukaryotic zOTUs. Using microscopy, we identified only the top <10% abundant, larger eukaryotic taxa (>10 µm), however quantification was possible. The site with the greater history of anthropogenic impact showed a more even community of associated bacteria and eukaryotes, and a significant increase in dissolved inorganic nitrogen following rainfall, when compared to the more buffered site. This coincided with a reduced proportional abundance of Actinomarina and Synechococcus spp., a change in SAR 11 clades, and an increase in the eukaryotic microbial groups Dinophyceae, Mediophyceae and Bathyoccocaceae, including a temporary dominance of the harmful algal bloom dinoflagellate Prorocentrum cordatum (syn. P. minimum). Finally, a validated hydrodynamic model of the estuary supported these results, showing that the more highly urbanised and upstream location consistently experienced a higher magnitude of salinity reduction in response to rainfall events during the study period. The best abiotic variables to explain community dissimilarities between locations were TDP, PN, modelled temperature and salinity (r = 0.73) for the free living bacteria, TP for the associated bacteria (r = 0.43), and modelled temperature (r = 0.28) for the microbial eukaryotic communities. Overall, these results show that a minor disturbance such as a brief rainfall event can significantly shift the microbial assemblage of an anthropogenically impacted area within an urban estuary to a greater degree than a seasonal change, but may result in a lesser response to the same disturbance at a buffered, more oceanic influenced location. Fine scale research into the factors driving the response of microbial communities in urban estuaries to climate related disturbances will be necessary to understand and implement changes to maintain future estuarine ecosystem services.

A cross-regional examination of patterns and environmental drivers of Pseudo-nitzschia harmful algal blooms along the California coast

Pseudo-nitzschia species with the ability to produce the neurotoxin domoic acid (DA) are the main cause of harmful algal blooms (HABs) along the U.S. West Coast, with major impacts on ecosystems, fisheries, and human health. While most Pseudo-nitzschia (PN) HAB studies to date have focused on their characteristics at specific sites, few cross-regional comparisons exist, and mechanistic understanding of large-scale HAB drivers remains incomplete. To close these gaps, we compiled a nearly 20-year time series of in situ particulate DA and environmental observations to characterize similarities and differences in PN HAB drivers along the California coast. We focus on three DA hotspots with the greatest data density: Monterey Bay, the Santa Barbara Channel, and the San Pedro Channel. Coastwise, DA outbreaks are strongly correlated with upwelling, chlorophyll-a, and silicic acid limitation relative to other nutrients. Clear differences also exist across the three regions, with contrasting responses to climate regimes across a north to south gradient. In Monterey Bay, PN HAB frequency and intensity increase under relatively nutrient-poor conditions during anomalously low upwelling intensities. In contrast, in the Santa Barbara and San Pedro Channels, PN HABs are favored under cold, nitrogen-rich conditions during more intense upwelling. These emerging patterns provide insights on ecological drivers of PN HABs that are consistent across regions and support the development of predictive capabilities for DA outbreaks along the California coast and beyond.

Variations in dissolved oxygen and aquatic biological responses in China's coastal seas

Coastal areas can represent an ecological transition zone with the function of biodiversity conservation, and good water quality is fundamental to maintaining this function. In this study, we analyzed data from 2011 to 2020 to reveal the variation in dissolved oxygen (DO) and the aquatic biological response in China's coastal seas. Results showed that DO in coastal waters exhibited an upward trend from 2011 to 2020 because of reduction in terrestrial anthropogenic pollutant (TAP) input. In comparison with DO in other seas, the DO content in the East China Sea was lower owing to higher TAP input, i.e., the proportion of DO of <5 mg L^-1 accounted for approximately 60% of the total. Species numbers, density, and the species diversity index of phytoplankton, zooplankton, and macrobenthos were different in the different sea areas because phytoplankton, zooplankton, and macrobenthos have different responses to changes in DO. In comparison with the species numbers of zooplankton and macrobenthos, the species numbers of phytoplankton were more significantly related to DO, and showed a negative linear relationship with a better DO environment (DO ≥ 5 mg L^-1; r² = 0.39, p < 0.01) and positive correlation with a poor DO environment (DO < 3 mg L^-1; r² = 0.52, p < 0.01). A better DO environment is conducive to increased density of macrobenthos. Studies have shown that a good DO environment contributes to coastal ecosystem health, and continuous control of TAP input is an effective means of ensuring DO recovery.

Deficiency of nitrogen but not phosphorus triggers the life cycle transition of the dinoflagellate Scrippsiella acuminata from vegetative growth to resting cyst formation

Nitrogen (N) and phosphorus (P) are essential elements for algal growth. When N and P are deficient, dinoflagellates will take a series of measures to achieve population continuation including formation of resting cysts, an important ecological strategy of dinoflagellates that plays a key role in the initiation and termination of harmful algal blooms (HABs). How the deficiency of N and P affects algal growth and cyst formation has been investigated in some dinoflagellate species, but how it affects the life cycle transition in dinoflagellates has been poorly understood. In this study, we further explored the effect of N and P deficiency on the algal growth and resting cyst production in the cosmopolitan HABs-causing species Scrippsiella acuminata via refining the N and P concentration gradients. Further, we tracked the expression patterns of one CyclinB and one CDK1 genes of S. acuminata at different growth stages under three deficiency concentrations (1/1000 dilutions of N, P, and both N and P). The results suggest that N deficiency always triggered the cyst formation but P deficiency mainly inhibited the vegetative growth instead of inducing cyst formation. We also observed the highest cyst production when S. acuminata was cultured in the f/2-Si medium that was a one-thousandth dilution of N and P (N∼ 0.882 μM; P∼ 0.0362 μM). Our results for the expressions of CyclinB and CDK1 were well consistent with the results of algal growth and cyst formation at different deficiencies of N and P in terms of that higher expressions of these two genes were corresponding to higher rates of vegetative cell growth, while their expressions in resting cysts maintained to be moderate but significantly lower than that in fast-growing vegetative cells. Although we are still not sure whether the changing expressions of the two genes did regulate the transition of life cycle (i.e. cyst formation), or happened as parallels to the expressions of other truly regulating genes, our observations are surely inspirational for further investigations on the genetic regulation of life cycle transition in dinoflagellates. Our work will provide clues to probe the physiological and molecular mechanisms underlying the nutrient deficiency-induced alternation between life cycle stages in dinoflagellates.

Establishment and preliminary study of electrophysiological techniques in a typical red tide species

Electrophysiology studies the electrical properties of cells and tissues including bioelectrical signals and membrane ion channel activities. As an important means to reveal ion channel related physiological functions and the underlying mechanisms, electrophysiological techniques have been widely used in studies of animals, higher plants and algae that are closely related to higher plants. However, few electrophysiological studies have been carried out in red tide organisms, especially in dinoflagellates, which is mainly due to the complex surface structure of dinoflagellate amphiesma. In this study, the surface amphiesma of Alexandrium pacificum, a typical red tide species, was removed by centrifugation, low-temperature treatment and enzymatic treatment. In all three treatments, low-temperature treatment with 4 °C for 2 h had high ecdysis rate and high fixation rate, and the treated cells were easy to puncture, so low-temperature treatment was used as a preprocessing treatment for subsequent current recording. Acquired protoplasts of A. pacificum were identified by calcofluor fluorescence and immobilized by poly-lysine. A modified "puncture" single-electrode voltage-clamp recording was first applied to dinoflagellates, and voltage-gated currents, which had the characteristics of outward K⁺ current and inward Cl^- current, were recorded and confirmed by ion replacement, indicating the voltage-gated currents were mixed. This method can be used as a technical basis for the electrophysiological study of dinoflagellates and provides a new perspective for the study of stress tolerance, red tide succession, and the regulation of physiological function of dinoflagellates.

Spatiotemporal changes of bacterial communities during a cyanobacterial bloom in a subtropical water source reservoir ecosystem in China

Cyanobacterial blooms, which not only threaten the health and stability of aquatic ecosystems but also influence the microbial community within, emerges as one of the most concerning problems in China. However, how cyanobacterial blooms affect the spatiotemporal variation of aquatic microbial communities remains relatively unclear. In this study, we used high-throughput sequencing to investigate how the cyanobacterial and bacterial community spatiotemporally vary along with main cyanobacterial bloom phases in upstream rivers of a eutrophicated water source reservoir. Both cyanobacterial and bacterial diversities in each river were significantly lower (P < 0.05) during the bloom outbreak phase, showing the apparent influence of cyanobacterial bloom. Dominant cyanobacterial taxa included Cyanobacteriales and Synechococcales, and dominant bacterial taxa comprised Acinetobacter, CL500-29, hgcI clade, Limnohabitans, Flavobacterium, Rhodoluna, Porphyrobacter, Rhodobacter, Pseudomonas, and Rhizobiales, whose changes of relative abundance along with the bloom indicated distinct community composition. Non-metric multidimensional scaling analysis proved that community composition had significant difference amongst bloom phases. Linear discriminant analysis (LDA) with LDA effect size analysis (LEfSe) identified unique dominant cyanobacterial and bacterial OTUs at different phases in each river, indicating spatiotemporal variations of communities. Canonical correlation analysis or redundancy analysis revealed that at different bloom phases communities of each river had distinct correlation patterns with the environmental parameters (temperature, ammonium, nitrate, and total phosphorus etc.), implying the spatial variations of microbial communities. Overall, these results expand current understanding on the spatiotemporal variations of microbial communities due to cyanobacterial blooms. Microbial interactions during the bloom may shed light on controlling cyanobacterial blooms in the similar aquatic ecosystems.

Water depth and land-use intensity indirectly determine phytoplankton functional diversity and further regulate resource use efficiency at a multi-lake scale

Biodiversity-ecosystem functioning relationships under multiple pressures have recently been the subject of broad studies. For the key primary producer in aquatic ecosystems, phytoplankton, several studies have focused on trait-based functional diversity (FD) and the related functioning (e.g., resource use efficiency, RUE), and their linkages. However, investigations of the effects of environmental factors at different levels (e.g., land use, lake morphometry, climate and nutrients) on FD and RUE are sparse. We developed a data-driven-model framework to simultaneously elucidate the effects of multiple drivers on FD (functional diversity based on dendrograms, FDc and functional richness, FRic) and RUE (of nitrogen and phosphorus) of phytoplankton based on data from 68 Yunnan-Guizhou Plateau lakes, Southwest China. We found that the concentration of total phosphorus, which is mainly affected by land-use intensity and influenced by water depth, was the primary (positive) driver of changes in both FDc and FRic, while RUE was mainly explained by phytoplankton FD (i.e., FRic). These results indicate that water depth and land-use intensity influence indirectly phytoplankton FD and further regulate RUE. Moreover, nonlinear correlations of RUE with FRic were found, which may be caused by interspecific competition and niche differentiation of the phytoplankton community related to nutrient levels. Our finding may help managers to set trade-off targets between FD and RUE in lake ecosystems except for extremely polluted ones, in which the thresholds derived from the Bayesian network, of total phosphorus, total nitrogen and land-use intensity were approximately 0.04 mg/L, 0.50 mg/L and 244 (unitless), respectively. The probability of meeting the RUE objectives was lower in shallow lakes than in deep lakes, but for FRic the opposite was observed.

An overview of Prorocentrum donghaiense blooms in China: Species identification, occurrences, ecological consequences, and factors regulating prevalence

Prorocentrum donghaiense Lu (also identified as Prorocentrum shikokuense Hada and Prorocentrum obtusidens Schiller) is a bloom-forming dinoflagellate species distributed worldwide. Blooms of P. donghaiense occur annually in adjacent waters of the East China Sea (ECS), especially in the waters near the Changjiang River Estuary. Blooms of this species have also been reported in nearby Japanese and Korean waters. There has been an apparent bloom-forming species succession pattern in the ECS since 2000, with diatom blooms in the early spring, shifting to long-lasting and large-scale dinoflagellate blooms dominated by P. donghaiense during the spring, and finally ended by diatom and/or Noctiluca scintillans blooms in summer. These bloom succession patterns were closely correlated with changes in environmental factors, such as temperature increase and anthropogenic eutrophication. Decreasing silicate by the construction of the Three Gorges Dam and increasing dissolved inorganic nitrogen flux were mainly influenced by high intensity human activities in the Changjiang River watershed, resulting in low Si/N ratio and high N/P ratios, possibly accelerating outbreak of P. donghaiense blooms. Phosphorous deficiency might be the most critical factor controlling the succession of microalgal blooms from diatoms to dinoflagellates. Prorocentrum donghaiense is a nontoxic species, but it can disrupt marine ecosystem by decreasing phytoplankton biodiversity and changing the structure of the food chain. Prorocentrum donghaiense blooms in the ECS have been intensively studied during the last two decades. Several possible mechanisms that contribute or trigger the annual blooms of this species have been proposed, but further research is required particularly on the aspect of nutrient budget, ecosystem impacts, as well as social-economic impact assessment.

Colimitation assessment of phytoplankton growth using a resource use efficiency approach in the Bay of Seine (French-English Channel)

Eutrophication and dystrophy are two of the main problems affecting coastal ecosystems. In the Bay of Seine, phosphorus (P) inputs from the Seine estuary have been largely reduced in the last decade, in contrast to nitrogen (N), which leads to high N/P ratio inputs. To study the effect of dystrophy, an enrichment bioassay using water sampled from the Bay of Seine was repeated 19 times over a period of 18 months with six different enrichments. After a few days, chlorophyll a (chl a), alkaline phosphatase activity (APA), transparent exopolymeric particles (TEPs), cytometric size structure, and maximum quantum yield of photosystem II were measured. The data provide strong evidence for an N & P colimitation system in the vast majority of the incubations, as only the N + P and N + P + Si enrichments supported phytoplankton growth, and Si only appeared to play a secondary role in our incubations. A N/P ratio of 16 equal to the Redfield ratio was identified as the optimum for balanced growth, as chl a was the highest and TEP and APA production was the lowest at this ratio. To fit the requirements of the colimited system, a new resource use efficiency (RUE_NP) calculation was developed to account for N and P colimitation instead of only one nutrient, as is usually the case. This calculation allows better representation of RUE in dystrophic conditions, as found in many highly anthropized ecosystems. The relationships between RUE_NP and the size structure of the phytoplankton community were explored, and a significant positive correlation between RUE_NP and larger cells (>2 μm) and a negative correlation with smaller cells (<2 μm) were noted, showing a better use of nutrients by larger cells. This study highlights an increase of RUE_NP with the phytoplankton cell size in a colimited system.

Short-term changes in algal blooms and phytoplankton community after the passage of Super Typhoon Lekima in a temperate and inner sea (Bohai Sea) in China

Extensive multi-species harmful algal blooms (HABs) were triggered by Super Typhoon Lekima in Laizhou Bay (Bohai Sea) in August 2019. After conducting two field cruises before and after the typhoon passage, we employed both high-performance liquid chromatography (HPLC)-pigment and microscopic methods to study the changes in the phytoplankton community and biomass. Following the passage of Lekima, the average surface salinity decreased, while dissolved inorganic nitrogen and dissolved silicate concentrations increased in the study area. The phytoplankton abundance and Chl a significantly increased after the typhoon event. Post-typhoon, the highest abundance values of Pseudo-nitzschia spp., Noctiluca scintillans, and Coscinodiscus spp. reached 10⁶ cells/L and those of Bacillaria paxillifera, Ceratium spp., and Gymnodinium catenatum were in the order of 10⁵ cells/L. HPLC-pigment CHEMTAX analysis showed that the biomass (Chl a) of dinoflagellates, diatoms, cryptophytes, chlorophytes, and haptophytes increased significantly after the typhoon. The increase in Chl a concentration was mainly attributable to large-sized phytoplankton, which are mostly diatoms and dinoflagellates. This study highlights that typhoons may cause HABs by introducing large amounts of freshwater and nutrients and change the phytoplankton community in a temperate and inner bay.

Zooplankton Population and Community Structure Changes in Response to a Harmful Algal Bloom Caused by Prorocentrum donghaiense in the East China Sea

Blooms of the dinoflagellate Prorocentrum donghaiense have had adverse impacts on marine ecosystems. However, ecological details, particularly the impacts and processes of the P. donghaiense bloom on the zooplankton community structure are poorly known. We investigated the changes of zooplankton communities in situ within the whole process of a P. donghaiense bloom in the coastal waters in southern Zhejiang Province, China, in May 2016. Results showed that ecological changes during the blooms of P. donghaiense could be divided into three major phases, namely the growth, maintenance, and dissipation phases with regard to the cell abundance of P. donghaiense by bottle sampling of plankton. A total of 42 species of zooplankton were identified. The average abundance and species number of zooplankton in the growth phase were significantly higher than those in the maintenance and dissipation phases. It is shown that the top-two highest proportions of zooplankton in the growth phase were small jellyfishes and copepods, while small jellyfishes and chaetognaths, and copepoda larvae and chaetognaths were the top-two highest in the maintenance and dissipation phases respectively. However, the values of biodiversity index have no statistically significant differences between the three phases. The present results suggested that P. donghaiense bloom produced significant negative impacts on the abundance and species composition of zooplankton with particular reference to copepods.

Dependence of genome size and copy number of rRNA gene on cell volume in dinoflagellates

Dinoflagellates are an ecologically important group of protists in aquatic environment and have evolved many unusual and enigmatic genomic features such as immense genome sizes, high repeated genes, and a large portion of hydroxymethyluracil in DNA. Although previous studies have observed positive correlations between the large subunit (LSU) rRNA gene copy number and genome size of a variety of eukaryotic organisms (e.g. higher plants and animals), or between cell volume and LSU rRNA gene copy number, and/or between genome size and cell size, which suggests a possible co-evolution among these three features in different lineages of life, it remains an open question regarding the relationships among these three parameters in dinoflagellates. For the first time, we estimated the copy numbers of the LSU rRNA gene, the genome sizes, and cell volumes within a broad range of dinoflagellates (covering 15 species of 11 genera) using single-cell qPCR-based assay (determining LSU rRNA gene copy number), FlowCAM (cell volume measurement), and ultraviolet spectrophotometry (genome size estimation). The measured copy number of LSU rRNA gene ranged from 398 ± 184 (Prorocentrum minimum) to 152,078 ± 33,555 copies•cell^-1 (Alexandrium pacificum), while the genome size and the cell volume ranged from 5.6 ± 0.2 (Karlodinium veneficum) to 853 ± 19.9 pg•cell^-1 (Pseliodinium pirum), and from 1,070 ± 225 (Kar. veneficum) to 168,474 ± 124,180 μm³ (Ps. pirum), respectively. Together with the three parameters measured in literature, there are significant positive linear correlations between LSU rRNA gene copy numbers and genome sizes, cell volumes and LSU rRNA gene copy numbers, and between genome sizes and cell volumes via comparisons of multi-model regression analyses, suggesting a dependence of genome size and rRNA gene copy number on the cell volumes of dinoflagellates. Validation of the measurement methods was conducted via comparisons between reported data in the literature and that predicted using the linear equations we obtained, and between genome size measured by flow cytometry (FCM) and ultraviolet spectrophotometry (Nanodrop). These results provide insightful understandings of dinoflagellate evolution in terms of the relationships among genomes, gene copy number, and cell volume, and of rRNA gene-based studies in intra-populational and intra-individual genetic diversity, taxonomy, and diversity assessment in the environment of dinoflagellates. The results also provide a dataset useful for reads calibration in environmental metabarcoding studies of dinoflagellates and selection of candidate species for whole genome sequencing.

Transcriptome profiling reveals versatile dissolved organic nitrogen utilization, mixotrophy, and N conservation in the dinoflagellate Prorocentrum shikokuense under N deficiency

Harmful algal blooms formed by certain dinoflagellate species often occur when environmental nitrogen nutrients (N) are limited. However, the molecular mechanism by which dinoflagellates adapt to low N environments is poorly understood. In this study, we characterized the transcriptomic responses of Prorocentrum shikokuense to N deficiency, along with its physiological impact. Under N deficiency, P. shikokuense cultures exhibited growth inhibition, a reduction in cell size, and decreases in cellular chlorophyll a and nitrogen contents but an increase in carbon content. Accordingly, gene expression profiles indicated that carbon fixation and catabolism and fatty acid metabolism were enhanced. Transporter genes of nitrate/nitrite, ammonium, urea, and amino acids were significantly upregulated, indicating that P. shikokuense cells invest to enhance the uptake of available dissolved N. Notably, upregulated genes included those involved in endocytosis and phagosomes, evidence that P. shikokuense is a mixotrophic organism that activates phagotrophy to overcome N deficiency. Additionally, vacuolar amino acid transporters, the urea cycle, and urea hydrolysis genes were upregulated, indicating N recycling within the cells under N deficiency. Our study indicates that P. shikokuense copes with N deficiency by economizing nitrogen use and adopting multiple strategies to maximize N acquisition and reuse while maintaining carbon fixation. The remarkable low N adaptability may confer competitive advantages to P. shikokuense for forming harmful blooms in DIN-limited environments.

Structural and functional variations of phytoplankton communities in the face of multiple disturbances

The global decline of freshwater biodiversity caused by climate change and human activities are supposed to disrupt ecosystem services related to water quality and alter the structure and function of aquatic communities across space and time, yet the effects of the combination of these factors on plankton community ecosystem has received relatively little attention. This study aimed to explore the impacts of disturbances (e.g. human activity, temperature, precipitation, and water level) on phytoplankton community structure (i.e. community evenness and community composition) and function (i.e. resource use efficiency) in four subtropical reservoirs over 7 years from 2010 to 2016. Our results showed that community turnover (measured as community dissimilarity) was positively related to disturbance frequency, but no significant correlation was found between phytoplankton biodiversity (i.e. evenness) and disturbance frequency. Phytoplankton resource use efficiency (RUE = phytoplankton biomass/ total phosphorus) was increased with a higher frequency of disturbance with an exception of cyanobacteria. The RUE of Cyanobacteria and diatoms showed significantly negative correlations with their community evenness, while the RUE of Chlorophyta exhibited a positive correlation with their community turnover. We suggest that multiple environmental disturbances may play crucial roles in shaping the structure and functioning of plankton communities in subtropical reservoirs, and mechanism of this process can provide key information for freshwater uses, management and conservation.

Phytoplankton Community Response to Nutrients, Temperatures, and a Heat Wave in Shallow Lakes: An Experimental Approach

Phytoplankton usually responds directly and fast to environmental fluctuations, making them useful indicators of lake ecosystem changes caused by various stressors. Here, we examined the phytoplankton community composition before, during, and after a simulated 1-month heat wave in a mesocosm facility in Silkeborg, Denmark. The experiment was conducted over three contrasting temperature scenarios (ambient (A0), Intergovernmental Panel on Climate Change A2 scenario (circa +3 °C, A2) and A2+ %50 (circa +4.5 °C, A2+)) crossed with two nutrient levels (low (LN) and high (HN)) with four replicates. The facility includes 24 mesocosms mimicking shallow lakes, which at the time of our experiment had run without interruption for 11 years. The 1-month heat wave effect was simulated by increasing the temperature by 5 °C (1 July to 1 August) in A2 and A2+, while A0 was not additionally heated. Throughout the study, HN treatments were mostly dominated by Cyanobacteria, whereas LN treatments were richer in genera and mostly dominated by Chlorophyta. Linear mixed model analyses revealed that high nutrient conditions were the most important structuring factor, which, regardless of temperature treatments and heat waves, increased total phytoplankton, Chlorophyta, Bacillariophyta, and Cyanobacteria biomasses and decreased genus richness and the grazing pressure of zooplankton. The effect of temperature was, however, modest. The effect of warming on the phytoplankton community was not significant before the heat wave, yet during the heat wave it became significant, especially in LN-A2+, and negative interaction effects between nutrient and A2+ warming were recorded. These warming effects continued after the heat wave, as also evidenced by Co-inertia analyses. In contrast to the prevailing theory stating that more diverse ecosystems would be more stable, HN were less affected by the heat wave disturbance, most likely because the dominant phytoplankton group cyanobacteria is adapted to high nutrient conditions and also benefits from increased temperature. We did not find any significant change in phytoplankton size diversity, but size evenness decreased in HN as a result of an increase in the smallest and largest size classes simultaneously. We conclude that the phytoplankton community was most strongly affected by the nutrient level, but less sensitive to changes in both temperature treatments and the heat wave simulation in these systems, which have been adapted for a long time to different temperatures. Moreover, the temperature and heat wave effects were observed mostly in LN systems, indicating that the sensitivity of phytoplankton community structure to high temperatures is dependent on nutrient availability.