Effect of earthworms in reduction and fate of antibiotic resistant bacteria (ARB) and antibiotic resistant genes (ARGs) during clinical laboratory wastewater treatment by vermifiltration

Behavior space-temporal of biofilters based on hazelnut shells/sawdust treating pharmaceutical and personal care products from domestic wastewater

Nature-based solutions (NBS) such as biofiltration are an efficient, eco-friendly, and economical alternative for wastewater treatment under decentralized contexts. However, the influence on removing emerging contaminants (pharmaceuticals and personal care products or PPCPs), considering different typologies and seasonality fate, has been little studied. In this work, four lab-scale biofiltration typologies (BM: Biofilter + microorganisms, BEM: Biofilter + earthworms + microorganisms, BH: Biofilter + microorganisms + plants + earthworms or Biofilter hybrid, BPM: Biofilter + plants + microorganisms) were monitored seasonally (April-December, 250 days), being fed with rural domestic wastewater. Zantedeschia aethiopica (L.) and Eisenia foetida Savigny were used as biotic components, interacting with organic support components (hazelnut shells and sawdust) for removal of organic matter, nutrients, and 4 PPCPs (caffeine, ibuprofen, losartan, and triclosan). The mass balance of PPCPs was carried out considering the input (influent), output (effluent), support (soil), and plant (root and stem/leaf). The results showed that the different evaluated typologies removed close to 100 % COD, up to 89 % NH4+-N, and up to 99 % coliforms. Meanwhile, caffeine, ibuprofen, losartan, and triclosan were removed between 34 and 100 %. Seasonality or biofiltration typology was non-significantly influential (p > 0.05). However, biofilter hybrid and the warm season were the most efficient for removing organic matter, nutrients, coliforms, and PPCPs. The PPCPs' fate was plants/substrate/effluent with values up to 36, 95, and 64 %, respectively. The effluent was caffeine's main fate. Substrate was the main fate of ibuprofen, losartan, and triclosan. Plants uptake caffeine as a carbon source.

Vermicomposting significantly reduced antibiotic resistance genes in cow manure even under high tetracycline concentrations

Minimizing antibiotic resistance genes (ARGs) in livestock manure is crucial for curbing ARG dissemination. Vermicomposting can eliminate ARGs, but the effect of residual antibiotics on its reduction efficacy remains unclear. Herein, Eisenia foetida was employed to convert cow manure with varying concentrations of tetracycline (i.e., 0, 10, 100 mg/kg), aiming to explore the impact of tetracycline on ARG fate during vermicomposting for 35 days. Results showed that the total ARG abundance in vermicomposting (0.05 copies/16S rRNA copies) was significantly lower than that in natural composting (0.06 copies/16S rRNA copies) (p < 0.05). Notably, exposure to tetracycline increased total ARG abundance (p < 0.05) and stimulated microbial succession during vermicomposting, with some ARGs increasing and others decreasing. But ARGs removal in vermicomposting was still higher even under tetracycline stress than that in natural composting. Overall, vermicomposting is an effective method for reducing ARGs in cow manure even at high tetracycline levels.

Optimization of a vermifiltration process for the treatment of high strength domestic greywater in hot climate area: A Response Surface Methodology approach

Discharging untreated or partially treated greywater spreads diseases to humans and depletes dissolved oxygen in water, endangering aquatic life. Current greywater treatment methods often require high capital investment, large floor space, and significant energy, whereas vermifiltration is an ecologically safe, cost-effective technology that efficiently reduces high levels of organic matter in wastewater. The present study focuses on the modeling and optimization of COD removal of a vermifiltration system, using Response Surface Methodology. The vermifilter consists of sawdust, sand, and gravel as filter media, and Eudrilus Eugenia as worm species. Experiences were conducted at room temperatures (26 - 31 °C). Key factors considered as influencing COD removal were hydraulic loading rate (HLR), initial COD, and earthworm density (EWD). All three factors significantly impacted COD removal, with notable cross effects. The model predicted a maximum COD removal of 91.51 % for influent with 1087 mg/L COD, 178 earthworms, and 133 L/m²/day HLR, achieving a residual COD value of 92.29 mg/L, that meet the requirements for the WHO discharge guidelines. However, due to high variability of household greywater quality in the area, the system has been full-scale designed for the value of 2500 mg/L which corresponds according to the model, to 123L/m²/day HLR. The life cycle cost (LCC) of the treated water is therefore 0.083USdollars /m3. Earthworm's growth was satisfactory (17 - 52.5 %) in most filters. Finally, results suggest that the model can be used to design field-scale vermifiltration systems with minimal variation.

Understanding bacterial ecology to combat antibiotic resistance dissemination

The dissemination of antibiotic resistance from environmental sources is a growing concern. Despite the widespread occurrence of antibiotic resistance transmission events, there are actually multiple obstacles in the ecosystem that restrict the flow of bacteria and genes, in particular nonnegligible biological barriers. How these ecological factors help combat the dissemination of antibiotic resistance and relevant antibiotic resistance-diminishing organisms (ARDOs) deserves further exploration. This review summarizes the factors that influence the growth, metabolism, and environmental adaptation of antibiotic-resistant bacteria (ARB) and restrict the horizontal gene transfer (HGT) of antibiotic resistance genes (ARGs). Additionally, this review discusses the achievements in the application of ARDOs to improve biotechnology for wastewater and solid waste remediation while highlighting current challenges limiting their broader implementation.

Are earthworms the victim, facilitator or antidote of antibiotics and antibiotic resistance at the soil-animal-human interface? A One-Health perspective

The transfer of antibiotics and antibiotic resistance (AR) to the soil systems poses ecological hazards to various organisms, including earthworms. Understanding the complex interactions between earthworms, antibiotics, and AR in the soil system requires a comprehensive assessment. Hence, the present review investigates the behaviour, fate, impacts, and mechanisms involved in the interaction of earthworms with antibiotics and AR. The antibiotics and AR detected in earthworms and their associated media, such as vermicompost, are presented, but several other antibiotics and AR widely detected in soils remain understudied. As receptors and bioassay organisms, earthworms are adversely affected by antibiotics and AR causing (1) acute and chronic toxicity, and (2) emergence of AR in previously susceptible earthworm gut microbiota, respectively. The paper also highlights that, apart from this toxicity, earthworms can also mitigate against antibiotics, antibiotic-resistant bacteria and antibiotic-resistance genes by reducing bacterial diversity and abundance. The behaviour and fate processes, including biodegradation pathways, biomarkers of antibiotics and AR in earthworms, are discussed. In addition, the factors controlling the behaviour and fate of antibiotics and AR and their interactions with earthworms are discussed. Overall, earthworms mitigate antibiotics and AR via various proximal and distal mechanisms, while dual but contradictory functions (i.e., mitigatory and facilitatory) were reported for AR. We recommend that future research based on the One-World-One-Health approach should address the following gaps: (1) under-studied antibiotics and AR, (2) degradation mechanisms and pathways of antibiotics, (3) effects of environmentally relevant mixtures of antibiotics, (4) bio-augmentation in earthworm-based bioremediation of antibiotics, (5) long-term fate of antibiotics and their metabolites, (6) bio-transfers of antibiotics and AR by earthworms, (7) development of earthworm biomarkers for antibiotics and AR, (8) application of earthworm-based bioremediation of antibiotics and AR, (9) cascading ecological impacts of antibiotics and AR on earthworms, and (10) pilot-scale field applications of earthworm-based bioremediation systems.

Comparative assessment of domestic wastewater treatment via Vermifiltration through various filter bed material

Vermifilter (VF) is considered sustainable for rural areas; however, filter media is the most important but has been explored less. This study evaluated the performance of vermifilters in treating domestic wastewater (DWW) using various filter media, including areca nutshell (AS), rice straw (RS), dry leaves (DL), and chicken eggshells (ES). We compared the results with four different reactors: R1 (AS), R2 (RS), R3 (DL), and R4 (ES). DWW was applied with a hydraulic loading rate (HLR) of 1 m3/m2/d with Eisenia fetida earthworm species. The results showed the removal of biochemical oxygen demand (BOD) by 82%, 76%, 73%, and 87%; chemical oxygen demand (COD) by 75%, 73%, 72%, and 88%; phosphate by 36%, 25%, 27%, and 50%; sulfate by 56%, 54%, 53%, and 71% in R1, R2, R3, and R4, respectively. Simultaneously, R4 experienced a fivefold reduction in total bacteria and a sixfold reduction in total coliform. Moreover, the most exceptional filter media for vermifiltration is eggshells for the earthworm's growth and treatment efficacy.

Impact of earthworms on antibiotic resistance genes removal in ampicillin-contaminated soil through bacterial community alteration

The emergence of antibiotic resistance genes (ARGs) as contaminants in soil poses a significant threat to public health. Earthworms (Eisenia foetida), which are common inhabitants of soil, have been extensively studied for their influence on ARGs. However, the specific impact of earthworms on penicillin-related ARGs remains unclear. In this study, we investigate the role of earthworms in mitigating ARGs, specifically penicillin-related ARGs, in ampicillin-contaminated soil. Utilizing high-throughput quantitative PCR (HT-qPCR), we quantified a significant reduction in the relative abundance of penicillin-related ARGs in soil treated with earthworms, showing a decrease with a p-value of <0.01. Furthermore, high-throughput 16S rRNA gene sequencing revealed that earthworm intervention markedly alters the microbial community structure, notably enhancing the prevalence of specific bacterial phyla such as Proteobacteria, Firmicutes, Chloroflexi, and Tenericutes. Our findings not only demonstrate the effectiveness of earthworms in reducing the environmental load of penicillin-related ARGs but also provide insight into the alteration of microbial communities as a potential mechanism. This research contributes to our understanding of the role of earthworms in mitigating the spread of antibiotic resistance and provides valuable insights for the development of strategies to combat this global health issue.

New developments on vermifiltration as a bio-ecological wastewater treatment technology: Mechanism, application, performance, modelling, optimization, and sustainability

The review discusses the advancements in vermifiltration research over the last decade, focusing on pollution removal mechanisms, system performance, the fate of filter components, and by-products. Vermifiltration has demonstrated remarkable capabilities, particularly in treating highly contaminated wastewater with Chemical Oxygen Demand (COD) levels exceeding 92,000 mg/L and Biochemical Oxygen Demand (BOD5) levels over 25,000 mg/L, achieving removal rates of approximately 89% and 91%, respectively. Importantly, vermifiltration maintains its effectiveness even with fluctuating organic loads at the inlet, thanks to optimization of parameters like Hydraulic Loading Rate, biodegradable organic strength, earthworm density and active layer depth. Clogging issues can be minimized through parameters optimization. The review also highlights vermifiltrations' potential in co-treating the organic fraction of municipal solid waste while significantly reducing heavy metal concentrations, including Cd, Ni, Pb, Cu, Cr, and Zn, during the treatment process. Earthworms play a pivotal role in the removal of various components, with impressive removal percentages, such as 75% for Total Organic Carbon (TOC), 86% for Total COD, 87% for BOD5, 59% for ammonia nitrogen, and 99.9% for coliforms. Furthermore, vermifiltration-treated effluents can be readily utilized in agriculture, with the added benefit of producing vermicompost, a nutrient-rich biofertilizer. The technology contributes to environmental sustainability, as it helps reduce greenhouse gas emissions (GHG), thanks to earthworm activity creating an aerobic environment, minimizing GHG production compared to other wastewater treatment methods. In terms of pollutant degradation modeling, the Stover-Kincannon model outperforms the first-order and Grau second-order models, with higher regression coefficients (R2 = 0.9961 for COD and R2 = 0.9353 for TN). Overall, vermifiltration emerges as an effective and sustainable wastewater treatment solution, capable of handling challenging wastewater sources, while also producing valuable by-products and minimizing environmental impacts.

Microbial-influenced pesticide removal co-occurs with antibiotic resistance gene variation in soil-earthworm-maize system

Within human-influenced landscapes, pesticides cooccur with a variety of antibiotic stressors. However, the relationship between pesticides removal process and antibiotic resistance gene variation are not well understood. This study explored pesticide (topramezone, TPZ) and antibiotic (polymyxin E, PME) co-contamination using liquid chromatography-tandem mass spectrometry (LC-MS/MS), bacterial-16 S rRNA sequencing and high-throughput quantitative polymerase chain reaction (HT-qPCR) in a soil-earthworm-maize system. After incubating soil for 28 days with TPZ and PME (10 mg kg-1 dry weight), earthworm weight-gain, mortality rates, and maize plant weight-gain only differed slightly, but height-gain significantly decreased. PME significantly increased TPZ-removal in the soil. Accumulation of TPZ in earthworm's tissues may pose potential risks in the food chain. Combined pollution altered the microbial community structure and increased the abundance of functional microorganisms involved in aromatic compound degradation. Furthermore, maize rhizosphere can raise resistance genes, however earthworms can reduce resistance genes. Co-contamination increased absolute abundance of mobile genetic elements (MGEs) in bulk-soil samples, antibiotic resistance genes (ARGs) in skin samples and number of ARGs in bulk-soil samples, while decreased absolute abundance of transposase gene in bulk-soil samples and number of ARGs in rhizosphere-soil samples. Potential hosts harbouring ARGs may be associated with the antagonistic effect during resistance and detoxification of TPZ and PMB co-occurrence. These findings provide insights into the mechanism underlining pesticide removal regarding occurrence of ARGs in maize agroecosystem.

Elimination of antibiotic-resistant bacteria and resistance genes by earthworms during vermifiltration treatment of excess sludge

Vermifiltration (VF) and a conventional biofilter (BF, no earthworm) were investigated by metagenomics to evaluate the removal rates of antibiotic-resistant bacteria (ARB), antibiotic resistance genes (ARGs), and class 1 integron-integrase (intI1), as well as the impact mechanism in combination with the microbial community. According to the findings of qPCR and metagenomics, the VF facilitated greater removal rates of ARGs (78.83% ± 17.37%) and ARB (48.23% ± 2.69%) than the BF (56.33% ± 14.93%, 20.21% ± 6.27%). Compared to the control, the higher biological activity of the VF induced an increase of over 60% in the inhibitory effect of earthworm coelomic fluid on ARB. The removal rates of ARGs by earthworm guts also reached over 22%. In addition, earthworms enhanced the decomposition of refractory organics, toxic, and harmful organics, which led to a lower selective pressure on ARGs and ARB. It provides a strategy for reducing resistant pollution in sewage treatment plants and recognizing the harmless stability of sludge.

Structure and diversity of earthworm communities in long-term irrigated soils with raw effluent and treated wastewater

This study was conducted in two natural meadows: first, soils were irrigated with raw wastewater (SIRWW) and in the second, soils were irrigated with treated wastewater (SITWW). Earthworms were sampled in eight soil blocks spaced 10 m apart at each site. Earthworm community was characterized and compared using density, biomass, composition, structure, species richness, and diversity parameters. At both meadows, 459 earthworm individuals from two families and seven species were collected. The highest earthworm density and species richness were recorded at SIRWW. Nicodrilus caligenus was the most abundant species. Most of earthworm community parameters decreased significantly at SITWW. Only two species (N. caligenus and Octodrilus complanatus) were common between the two grasslands. Among the seven species identified at both meadows, four (Allolobophora longa, Eisenia foetida, Allolobophora rosea, Allolobophora chlorotica) were exclusively present in SIRWW, whereas a single species (Amynthas sp.) was characterized in SITWW. Three ecological earthworm groups (epigeic, endogeic, and anectic) were represented in SIRWW, with the dominance of endogeics. Further studies are needed to quantify pollution in this soils and the accumulation of pollutant load in earthworms. It is also important to highlight the relationship between the abundance and diversity of earthworms in these two ecosystems with soil biological activity.

Animal manure as a biostimulant in bioremediation of oil-contaminated soil: the role of earthworms

Human dire need for environmental sustainability have triggered researchers to seek for organic substrates as an alternative to synthetic fertilizers in order to enhance bioremediation. Presently, nitrogen-rich organic substrate not only proffered the solution but also have proven useful in enhancing the rate of bioremediation. Animal manure is a nitrogen-rich organic substrate which has been found very effective for stimulating plant growth. Some of the animal manure used by researchers are poultry droppings, cow dung, goat manure, and pig manure. In all the papers reviewed, it was gathered that animal manure enhances bioremediation by providing nutrients favoring microbial growth and activities responsible hydrocarbon degradation. However, of the four commonly used animal manure, poultry droppings was severally reported to be a better biostimulant. Also, animal manure when sun-dried and pulverized yielded better results. It was observed that animal manure serves as substrates for earthworms which further accelerates the potential of the earthworms to remediate the soil. Also, the pollution of soil by crude oil causes a surge in its carbon content which may slow down microbial growth and activities. Thorough review of literatures, however, indicates that animal manure is capable of providing appropriate nutrient concentrations to offset such imbalance. Studies continue to lay credence to the efficacy of animal manure in enhancing microbial growth and activities responsible for the biodegradation of hydrocarbons contained in crude oil. Furthermore, the co-application of animal manure with other bioremediation strategies, such as phytoremediation and vermiremediation, should be combined for effective bioremediation of oil-contaminated environment.

Does Plant Identity Affect the Dispersal of Resistomes Above and Below Ground?

Resistomes are ubiquitous in natural environments. Previous studies have shown that both the plant phyllosphere and soil-borne nematodes were reservoirs of above- and below-ground resistomes, respectively. However, the influence of plant identity on soil, nematode, and phyllosphere resistomes remains unclear. Here, a microcosm experiment was used to explore the characteristics of bacterial communities and resistomes in soil, nematode, and phyllosphere associated with six different plant identities (Lactuca sativa, Cichorium endivia, Allium fistulosum, Coriandrum sativum, Raphanus sativus, and Mesembryanthemum crystallinum). A total of 222 antibiotic resistance genes (ARGs) and 7 mobile genetic elements (MGEs) were detected by high-throughput quantitative PCR from all samples. Plant identity not only significantly affected the diversity of resistomes in soil, nematode, and phyllosphere but also influenced the abundance of resistomes in nematodes. Shared bacteria and resistomes indicated a possible pathway of resistomes transfer through the soil-nematode-phyllosphere system. Structural equation models revealed that plant identity had no direct effect on phyllosphere ARGs, but altered indirectly through complex above- and below-ground interactions (soil-plant-nematode trophic transfer). Results also showed that bacteria and MGEs were key factors driving the above- and below-ground flow of resistomes. The study extends our knowledge about the top-down and bottom-up dispersal patterns of resistomes.