Efficient decomposition of lignocellulose and improved composting performances driven by thermally activated persulfate based on metagenomics analysis

Mechanism of reducing antibiotic resistance genes by nano-selenium during composting: insight into host microorganisms and a two-component system

Nano-selenium (nano-Se) makes up for the low biological activity and high toxicity of inorganic selenium, and is widely used as a novel Se fertilizer in agriculture. This study investigated the effects of different concentrations of nano-Se on Antibiotic resistance genes (ARGs) and host microorganisms during aerobic composting of cow manure. The results showed that high-concentration nano-Se had excellent effects on ARG removal, effectively inhibiting the dominant ARG subtypes such as aada and tetA(48). Transposase was the mobile genetic element (MGE) that deserves the most attention, which maintained a relatively high abundance in each sample. Antibiotic efflux-transposase had the highest abundance of all ARG resistance mechanism-MGE types. At the end of composting, antibiotic efflux-transposase abundance in group Se_H decreased by 7.14 %, 21.96 %, and 54.92 %, respectively, compared with groups CK, Se_L, and Se_M. High-concentration nano-Se inhibited the activity of transposase to reduce the risk of horizontal transmission of antibiotic efflux ARGs. Proteobacteria and Actinobacteria were the main ARG host microorganisms, and Actinobacteria had a lower tolerance threshold for nano-Se. Network analysis and Mantel testing demonstrated that high-concentration nano-Se could weaken the association between host microorganisms and the ARG subtypes. Structural equation models showed that high-concentration nano-Se regulated the transfer of ARGs primarily by stimulating signal transduction in host microorganisms. Thus, the addition of proper concentrations of nano-Se during aerobic composting of cow manure was effective in reducing ARG exposure risk by regulating transposase and host microorganisms.

Differences in pretreatment effects and mechanisms of permonosulfate activated by different iron-based catalysts on lignocellulose

Pretreatment is essential for enhancing the energy potential of lignocellulose and also a significant bottleneck for their utilization. Advanced oxidation processes (AOPs), especially those based on permonosulfate (PMS), have become a research focus due to their mild conditions and high efficiency. However, activation of peroxides in PMS-based AOPs poses a critical challenge, necessitating the development of catalysts that can minimize sulfate consumption while enhancing the pretreatment efficacy. Here, we compared the pretreatment effects of PMS activated by three monometallic iron-based catalysts and LaFeO3 on sugarcane bagasse. We assessed the enzymatic saccharification yield, chemical component transformation, and substrate physical-chemical properties changes. The LaFeO3-activated PMS system outperformed other systems in hemicellulose removal rate (87.73 %), cellulose removal rate (12.12 %), enzymatic saccharification yield (76.39 %), and sugar conversion rate (92.04 %). Compared with α-FeOOH-activated PMS system, LaFeO3-activated PMS system produced more free radicals of •OH and SO4•- at the initial stage, and then the free radicals dropped sharply. This free radical generation model enabled the removal of large amounts of lignin and hemicellulose while kept more cellulose, and resulted in the best enzymatic saccharification efficiency. This pretreatment creates favorable conditions for further processing.

On-site tracking of trace Aflatoxin B1 in food waste composting via a portable colorimetric sensing platform with nanozymes

Rapid, on-site accurate tracking of harmful mycotoxin in food waste composting is essential to provide instant content information for efficient supervision. However, on-site analytical tools especially colorimetric sensors currently suffer from low sensitivity/selectivity and poor environment robustness, posing hurdles for their applications. In this work, we have proposed a portable paper-based colorimetric sensor to detect the representative mycotoxin (aflatoxin B1, AFB1) in the composting process, where the superior catalytic velocity (6-fold higher than the natural enzyme) and well-regulated catalytic activity of nanozyme by the aptamers ensure the high sensitivity (a wide linear range: 0.1-1000 ng/mL; an ultra-low limit of detection: 0.082 ng/mL) and good selectivity of the colorimetric sensing, respectively. The smartphone-based platform exhibits high accuracy with the relative standard deviation within 3.67 % compared commercial enzyme-linked immunosorbent assay. Finally, on-site tracking of the AFB1 content in food waste during the composting process with or without the oxidant (potassium persulfate) has been carried out using the developed colorimetric sensor. It is concluded that reducing the AFB1 generation in the food waste is more meaningful than the compost treatment. This study offers a promising method for in situ analysis of trace AFB1 in food waste compost to ensure environmental and human health safety.

The community succession mechanisms and interactive dynamics of microorganisms under high salinity and alkalinity conditions during composting

Microorganisms drive organic matter degradation and humification during composting. However, the mechanisms underlying microbial community succession and their interactions under saline-alkali stress are poorly understood. In this study, we investigated the microbial community assembly processes and microbial niche dynamics during composting in the high-saline-alkaline region. The niche breadth of the microbial community expanded from 5.8 to 15 and salt-alkali conditions alleviation prompted a shift in microbial community assembly towards stochastic processes. Alkalinity (R = 69.08%) and available phosphorus (AP) (R = 45.70%) are identified as the primary environmental stress factors. Salinity primarily impacted the niche breadth, while alkalinity predominantly determined the assembly processes of microorganisms. The degradation of organic matter in high-temperature environments enhanced the release of AP, altering the processes of microbial community assembly and driving niche differentiation within the microbial community. The abundant taxa actively responded to the changes in the environmental conditions, while the rare taxa maintained the community stability by expanding their ecological niches. The interactions between microorganisms are mainly based on synergism. The native microorganisms, such as Alcanivorax, Corynebacterium, and Rhodohalobacter, played a key role in promoting compost maturity. They tolerated the high-salinity and alkaline environments and also withstood high temperatures. This study revealed for the first time the succession mechanisms and interaction characteristics of microbial communities under salinity and temperature stress, providing theoretical guidance for microbial inoculation during the composting of high-saline and alkaline organic waste.

Insights into nitrogen metabolism and humification process in aerobic composting facilitated by microbial inoculation

To enhance the retention of compost nutrients, specifically in nitrogen metabolism and humification, compound microbial agents were added during the aerobic composting of bagasse pith and buffalo manure. The introduction of the microbial agent successfully colonized the mixture, boosted the degradation capacity of organic matter, and facilitated the formation of nitrogenous substances and humic substances (HSs). The incorporation of a composite microbial inoculum led to a substantial rise in total Kjeldahl nitrogen (TKN) by 62.04%, nitrate nitrogen (NO- 3-N) by 291.65%, and amino acid (AA) by 78.77%. Furthermore, this intervention resulted in achieving a humic acid (HA) to fulvic acid (FA) ratio of 1.64. Metagenomic sequencing revealed enhanced synergistic interactions among microorganisms through inoculation, increasing the abundance of functional genes related to nitrification and nitrogen fixation compared to the uninoculated control. Spearman correlation analysis identified unclassified_c__Deltaproteobacteria, unclassified_f__Planctomycetaceae, Chryseosolibacter, unclassified_f__Hyphomicrobiaceae as the principal producers of HA. This research provides insights into the interactions between nitrogen metabolism and humification in composting, aiming to effectively retain compost nutrients and support the long-term sustainability of agriculture.

Lignocellulose degradation and temperature adaptation mechanisms during composting of mushroom residue and wood chips at low temperature with inoculation of psychrotolerant microbial agent

Low ambient temperature become the limiting factor of composting in cold regions, thus hindering the recycle of agricultural and forestry wastes. In this study, the composting of mushroom residue and wood chips (MRWC) under low temperature was successfully implemented with inoculation of psychrotolerant cellulolytic microbial agent. Composting entered thermophilic stage on third day and the peak temperature reached to 66.25 °C. After 84 days of composting, the degradation rate of cellulose and hemicellulose was 40.85% and 100%, respectively and the compost product was completely mature and met the requirements of organic fertilizer. Metagenomic and transcriptome sequencing were applied to reveal the microbial composition and their substrates conversion functions and adaptation mechanisms through low to high temperatures. Streptomyces, Mesorhizobium, Devosia, Aspergillus and Mucor were dominant genera in the microbial community that were rich in genes of lignocellulose degradation. Various genes related to low temperature adaptation (fatty acid, trehalose, mannitol, betaine metabolism and cold shock mechanism) and high temperature tolerance (heat shock and antioxidant) were detected during MRWC composting. These results indicated that microbes during composting constituted a high-efficiency lignocellulosic ultilization system in cold conditions. Besides, the microbes of microbial agent, especially Streptomyces and Aspergillus, possessed numerous genes involving in lignocellulose degradation and temperature adaptation and quite different temperature response patterns were found to perform in bacteria and fungi. The transcription levels of most these genes in Aspergillus exhibited significant differences under different substrates and temperature conditions, suggesting that the inoculum was crucial to the composting process and beneficial to maintain the temperature of piles. This study demonstrated that the application of psychrotolerant microbes was a promising strategy to increase the efficiency of composting in cold regions and these results could also provided the guidance for optimizing microbial agent.

A Mechanism of Reducing Methane Production During Sewage Sludge Composting by Adding Urea

The study of the effect of the mechanism of urea addition to sewage sludge and sawdust-composting substrates on methane production is still limited. In the present study, the systematic investigation of the effect of urea addition (0.18, 0.9 and 1.8 kg) on methane production is discussed through the dynamics of physical properties, enzymes, and the microbial community during composting. The results showed that high urea addition (1.8 kg) suppressed methane production, with a lower rate and a shorter duration of warming in the thermophilic phase, but significantly enhanced cellulase activity, urease, and peroxidase, and promoted the degradation of organic carbon, as well as the loss of nitrogen. A high addition of urea stimulated the growth and reproduction of Sinibacillus, Pseudogracilibacillus, Sporosarcina, and Oceanobacillus. The random forest model indicated that the top six independent determinants of CH4 emissions were Methanobacterium, temperature, organic matter (OM), Methanospirillum, and NH4+-N. Furthermore, structural equation modeling displayed that NH4+-N, O2, and pH were the main physicochemical properties affecting CH4 emissions. Methanobacterium, Methanosarcina, and Methanosphaera were the main archaea, and Bacillaceae were the main bacteria affecting CH4 emissions. This study provides new insights and a theoretical basis for optimizing urea addition strategies during composting.

Phosphate solubilization and plant growth properties are promoted by a lactic acid bacterium in calcareous soil

On the basis of good phosphate solubilization ability of a lactic acid bacteria (LAB) strain Limosilactobacillus sp. LF-17, bacterial agent was prepared and applied to calcareous soil to solubilize phosphate and promote the growth of maize seedlings in this study. A pot experiment showed that the plant growth indicators, phosphorus content, and related enzyme activity of the maize rhizospheric soils in the LF treatment (treated with LAB) were the highest compared with those of the JP treatment (treated with phosphate solubilizing bacteria, PSB) and the blank control (CK). The types of organic acids in maize rhizospheric soil were determined through LC-MS, and 12 acids were detected in all the treatments. The abundant microbes belonged to the genera of Lysobacter, Massilia, Methylbacillus, Brevundimonas, and Limosilactobacillus, and they were beneficial to dissolving phosphate or secreting growth-promoting phytohormones, which were obviously higher in the LF and JP treatments than in CK as analyzed by high-throughput metagenomic sequencing methods. In addition, the abundance values of several enzymes, Kyoto Encyclopedia of Genes and Genomes (KEGG) orthology, and Carbohydrate-Active Enzymes (CAZys), which were related to substrate assimilation and metabolism, were the highest in the LF treatment. Therefore, aside from phosphate-solubilizing microorganisms, LAB can be used as environmentally friendly crop growth promoters in agriculture and provide another viable option for microbial fertilizers. KEY POINTS: • The inoculation of LAB strain effectively promoted the growth and chlorophyll synthesis of maize seedlings. • The inoculation of LAB strain significantly increased the TP content of maize seedlings and the AP concentration of the rhizosphere soil. • The inoculation of LAB strain increased the abundances of the dominant beneficial functional microbes in the rhizosphere soil.

Potassium persulfate enhances humification of chicken manure and straw composting: The perspective of rare and abundant microbial community structure and ecological interactions

Improper disposal of organic solid waste results in serious environmental pollution. Aerobic composting provides an environmentally friendly treatment method, but improving humification of raw materials remains a challenge. This study revealed the effect of different concentrations of potassium persulfate (PP) on humification of chicken manure and straw aerobic composting and the underlying microbial mechanisms. The results showed that when 0.6 % PP was added (PPH group), humus and the degree of polymerization were 80.77 mg/g and 2.52, respectively, which were significantly higher than those in 0.3 % PP (PPL group). As the concentration of PP was increased, the composition of rare taxa (RT) changed and improved in evenness, while abundant taxa (AT) was unaffected. Additionally, the density (0.037), edges (3278), and average degree (15.21) in the co-occurrence network decreased compared to PPL, while the average path (4.021) and modularity increased in PPH. This resulted in facilitating the turnover of matter, information, and energy among the microbes. Interestingly, cooperative behavior between microorganisms during the maturation period (24-60 d) occurred in PPH, but competitive relationships dominated in PPL. Cooperative behavior was positively correlated with humus (p < 0.05). Because the indices, such as higher degree, betweenness centrality, eigenvector centrality, and closeness centrality of the AT, were located in the microbial network center compared to RT, they were unaffected by the concentration of PP. The abundance of carbohydrate and amino acid metabolic pathways, which play an important role in humification, were higher in PPH. These findings contribute to understanding the relative importance of composition, interactions, and metabolic functionality of RT and AT on humification during chicken manure and straw aerobic composting under different concentrations of PP, as well as provide a basic reference for use of various conditioning agents to promote humification of organic solid waste.

Investigating the inhibitory mechanism of methanogenesis during composting under the combined influence of amoxicillin and copper pollution

This study investigated the effects of different levels of combined amoxicillin and copper (Cu) pollution on the methanogenesis of microbial communities during aerobic composting of dairy manure. Three groups were established: the control group (CK), a low-level combined pollution group (L), and a high-level combined pollution group (H). As the level of pollution increased, carbohydrate metabolism decreased during the thermophilic phase of composting, while signal translation increased. Compared with the initial phase, functional genes related to the acetoclastic pathway decreased significantly in abundance during the thermophilic phase, and cdh had the lowest relative abundance among acetoclastic pathway with a decrease of 81.52%, 81.88%, and 84.73% in groups CK, L, and H, respectively. The cumulative methane emissions in group H decreased by 31.56% and 9.23%, respectively, compared with those from groups CK and L. These results contribute to understanding the effects of combined amoxicillin and Cu pollution on methane emissions during composting.

Biochar addition accelerates the humification process by affecting the microbial community during human excreta composting

Biochar addition plays an important role in manure composting, but its driving mechanism on microbial succession and humification process of human excreta composting is still unclear. In the present study, the mechanism of biochar addition was explored by analysing the humification process and microbial succession pattern of human excreta aerobic composting without and with 10% biochar (HF and BHF). Results indicated that BHF improved composting temperature, advanced the thermophilic phase by 1 d, increased the germination index by 49.03%, promoted the growth rate of humic acid content by 17.46%, and raised the compost product with the ratio of humic acid to fulvic acid (HA/FA) by 16.19%. Biochar regulated the diversity of fungi and bacteria, increasing the relative abundance of Planifilum, Meyerozyma and Melanocarpus in the thermophilic phase, and Saccharomonospora, Flavobacterium, Thermomyces and Remersonia in the mature phase, which accelerates the humification. Bacterial communities' succession had an obvious correlation with the total carbon, total nitrogen, and temperature (P < 0.05), while the succession of fungal communities was influenced by the HA/FA and pH (P < 0.05). This study could provide a reference for the improvement of on-site human excreta harmless by extending the thermophilic phase, and facilitating the humification in human excreta compost with biochar addition.

New insights into pathogenic performances during peroxydisulfate composting: sources, pathways, and influencing factors

Livestock manure treatment technology and composting and its products have been widely used in agricultural soil. However, little was known about the variations in the fate of pathogens and the factors affecting their pathogenic ability during this process, which posed threats to ecological safety and public health globally. This study used a metagenomic approach to profile the behaviors of pathogens during peroxydisulfate composting. Results showed that Pseudomonas aeruginosa, Klebsiella pneumoniae, Escherichia coli, Burkholderia pseudomallei, and Mycobacterium tuberculosis were the main secretors of virulence factors (VFs) in composting system; their abundance and the virulence factor-related genes they carried were better downregulated under the role of peroxydisulfate. In addition, peroxydisulfate composting ensured the lower moisture, weakening the swimming mobility behavior of pathogens through suppressing the abundance of genes associated with flagellar formation, and impaired the communication between pathogens by regulating quorum sensing (QS)- and quorum quenching (QQ)-related genes. Moreover, reduced abundance of resistomes restricted pathogens disseminating infection. In summary, this study provided useful strategies in managing pathogen pathogenic ability during composting based on pathogenic source (pathogens), pathway (VFs), influencing factors (QS/QQ, physicochemical habitats), and resistomes.

Temperature-dependent microbial mechanism and accumulation of volatile fatty acids in primary sludge pretreated with peroxymonosulfate

For revealing the influence of temperature on volatile fatty acids (VFAs) generation from primary sludge (PS) during the anaerobic fermentation process facilitated by peroxymonosulfate (PMS), five fermentation groups (15, 25, 35, 45, and 55 °C) were designed. The results indicated that the production of VFAs (5148 mg COD/L) and acetic acid (2019 mg COD/L) reached their peaks at 45 °C. High-throughput sequencing technology disclosed that Firmicutes, Proteobacteria, and Actinobacteria was the dominant phyla, carbohydrate metabolism and membrane transport were the most vigorous at 45 °C. Additionally, higher temperature and PMS exhibit synergistic effects in promoting VFAs accumulation. This study unveiled the mechanism of the effect of the pretreatment of PS with PMS on the VFAs production, which established a theoretical foundation for the production of VFAs.

The roles of rare and abundant microbial species in the primary succession of biological soil crusts are differentiated in metal tailings ponds with different states

Tailings ponds formed by long-term accumulation of mineral processing waste have become a global environmental problem. Even worse, tailings ponds are often simply abandoned or landfilled after they cease to be used. This allows pollution to persist and continue to spread in the environment. The significance of primary succession mediated by biological soil crusts for tailings pond remediation has been illustrated by previous studies. However, the process of primary succession may not be the same at different stages during the lifetime of tailings ponds. Therefore, we investigated the environmental differences and the successional characteristics of microbial communities in the primary successional stage of tailings ponds at three different states. The results showed that the primary succession process positively changed the environment of tailings ponds in any state of tailings ponds. The primary successional stage determined the environmental quality more than the state of the tailings pond. In the recently abandoned tailings ponds, abundant species were more subjected to heavy metal stress, while rare species were mainly limited by nutrient content. We found that as the succession progressed, rare species gradually acquired their own community space and became more responsive to environmental stresses. Rare species played an important role in microbial keystone species groups.

Microbial necromass facilitated the humification process through amino sugar reactions during the co-composting of cow manure plus sawdust

Humus (HS) reservoirs can embed microbial necromass (including cell wall components that are intact or with varying degrees of fragmentation) in small pores, raising widespread concerns about the potential for C/N interception and stability in composting systems. In this study, fresh cow manure and sawdust were used for microbial solid fermentation, and the significance of microbial residues in promoting humification was elucidated by measuring their physicochemical properties and analyzing their microbial informatics. These results showed that the stimulation of external carbon sources (NaHCO3) led to an increase in the accumulation of bacterial necromass C/N from 6.19 and 0.91 µg/mg to 21.57 and 3.20 µg/mg, respectively. Additionally, fungal necromass C/N values were about 3 times higher than the initial values. This contributed to the increase in HS content and the increased condensation of polysaccharides and nitrogen-containing compounds during maturation. The formation of cellular debris mainly depends on the enrichment of Actinobacteria, Proteobacteria, Ascomycota, and Chytridiomycota. Furthermore, Euryarchaeota was the core functional microorganism secreting cell wall lytic enzymes (including AA3, AA7, GH23, and GH15). In conclusion, this study comprehensively analyzed the transformation mechanisms of cellular residuals at different profile scales, providing new insights into C/N cycles and sequestration.

Exploring the promoting effect of nitrilotriacetic acid on hydroxyl radical and humification during magnetite-amended composting of sewage sludge

The OH production by adding magnetite (MGT) alone has been reported in composting. However, the potential of nitrilotriacetic acid (NTA) addition for magnetite-amended sludge composting remained unclear. Three treatments with different addition [control check (CK); T1: 5 % MGT; T2: 5 % MGT + 5 % NTA] were investigated to characterize hydroxyl radical, humification and bacterial community response. The NTA addition manifested the best performance, with the peak OH content increase by 52 % through facilitating the cycle of Fe(Ⅱ)/Fe(Ⅲ). It led to the highest organic matters degradation (22.3 %) and humic acids content (36.1 g/kg). Furthermore, NTA addition altered bacterial community response, promoting relative abundances of iron-redox related genera, and amino acid metabolism but decreasing carbohydrate metabolism. Structural equation model indicated that temperature and Streptomyces were the primary factors affecting OH content. The study suggests that utilizing chelators is a promising strategy to strengthen humification in sewage sludge composting with adding iron-containing minerals.

The bioaugmentation effect of microbial inoculants on humic acid formation during co-composting of bagasse and cow manure

The effective degradation of recalcitrant lignocellulose has emerged as a bottleneck for the humification of compost, and strategies are required to improve the efficiency of bagasse composting. Bioaugmentation is a promising method for promoting compost maturation and improving the quality of final compost. In this study, the bioaugmentation effects of microbial inoculants on humic acid (HA) formation during lignocellulosic composting were explored. In the inoculated group, the maximum temperature was increased to 72.5 °C, and the phenol-protein condensation and Maillard humification pathways were enhanced, thus increasing the HA content by 43.85%. After inoculation, the intensity of the microbial community interactions increased, particularly for fungi (1.4-fold). Macrogenomic analysis revealed that inoculation enriched thermophilic bacteria and lignocellulose-degrading fungi and increased the activity of carbohydrate-active enzymes and related metabolic functions, which effectively disrupted the recalcitrant structure of lignocellulose to achieve a high humification degree. Spearman correlation analysis indicated that Stappia of the Proteobacteria phylum, Ilumatobacter of the Actinomycetes phylum, and eleven genera of Ascomycota were the main HA producers. This study provides new ideas for bagasse treatment and recycling and realizing the comprehensive use of resources.

Effects of aeolian deposition on soil properties and microbial carbon metabolism function in farmland of Songnen Plain, China

The effects of wind erosion, one of the crucial causes of soil desertification in the world, on the terrestrial ecosystem are well known. However, ecosystem responses regarding soil microbial carbon metabolism to sand deposition caused by wind erosion, a crucial driver of biogeochemical cycles, remain largely unclear. In this study, we collected soil samples from typical aeolian deposition farmland in the Songnen Plain of China to evaluate the effects of sand deposition on soil properties, microbial communities, and carbon metabolism function. We also determined the reads number of carbon metabolism-related genes by high-throughput sequencing technologies and evaluated the association between sand deposition and them. The results showed that long-term sand deposition resulted in soil infertile, roughness, and dryness. The impacts of sand deposition on topsoil were more severe than on deep soil. The diversity of soil microbial communities was significantly reduced due to sand deposition. The relative abundances of Nitrobacteraceae, Burkholderiaceae, and Rhodanobacteraceae belonging to α-Proteobacteria significantly decreased, while the relative abundances of Streptomycetaceae and Geodermatophilaceae belonging to Actinobacteria increased. The results of the metagenomic analysis showed that the gene abundances of carbohydrate metabolism and carbohydrate-activity enzyme (GH and CBM) significantly decreased with the increase of sand deposition amount. The changes in soil microbial community structure and carbon metabolism decreased soil carbon emissions and carbon cycling in aeolian deposition farmland, which may be the essential reasons for land degradation in aeolian deposition farmland.

Effect of aqueous phase from hydrothermal carbonization of sewage sludge on heavy metals and heavy metal resistance genes during chicken manure composting

Livestock manure is often contaminated with heavy metals (HMs) and HM resistance genes (HMRGs), which pollute the environment. In this study, we aimed to investigate the effects of the aqueous phase (AP) produced by hydrothermal carbonization (HTC) of sewage sludge (SS) alone and the AP produced by co-HTC of rice husk (RH) and SS (RH-SS) on humification, HM bioavailability, and HMRGs during chicken manure composting. RH-SS and SS increased the humic acid content of the compost products by 18.3 % and 9.7 %, respectively, and significantly increased the humification index (P < 0.05) compared to the CK (addition of tap water). The passivation of HMs (Zn, Cu, As, Pb, and Cr) increased by 12.17-23.36 % and 9.74-15.95 % for RH-SS and SS, respectively, compared with that for CK. RH-SS and SS reduced the HMRG abundance in composted products by 22.29 % and 15.07 %, respectively. The partial least squares path modeling results showed that SS and RH-SS promoted compost humification while simultaneously altering the bacterial community and reducing the bioavailability of metals and host abundance of HMRGs, which has a direct inhibitory effect on the production and distribution of HMRGs. These findings support a new strategy to reduce the environmental risk of HMs and HMRGs in livestock manure utilization.

Integrating multi-platform assembly to recover MAGs from hot spring biofilms: insights into microbial diversity, biofilm formation, and carbohydrate degradation

BACKGROUND

Hot spring biofilms provide a window into the survival strategies of microbial communities in extreme environments and offer potential for biotechnological applications. This study focused on green and brown biofilms thriving on submerged plant litter within the Sungai Klah hot spring in Malaysia, characterised by temperatures of 58-74 °C. Using Illumina shotgun metagenomics and Nanopore ligation sequencing, we investigated the microbial diversity and functional potential of metagenome-assembled genomes (MAGs) with specific focus on biofilm formation, heat stress response, and carbohydrate catabolism.

RESULTS

Leveraging the power of both Illumina short-reads and Nanopore long-reads, we employed an Illumina-Nanopore hybrid assembly approach to construct MAGs with enhanced quality. The dereplication process, facilitated by the dRep tool, validated the efficiency of the hybrid assembly, yielding MAGs that reflected the intricate microbial diversity of these extreme ecosystems. The comprehensive analysis of these MAGs uncovered intriguing insights into the survival strategies of thermophilic taxa in the hot spring biofilms. Moreover, we examined the plant litter degradation potential within the biofilms, shedding light on the participation of diverse microbial taxa in the breakdown of starch, cellulose, and hemicellulose. We highlight that Chloroflexota and Armatimonadota MAGs exhibited a wide array of glycosyl hydrolases targeting various carbohydrate substrates, underscoring their metabolic versatility in utilisation of carbohydrates at elevated temperatures.

CONCLUSIONS

This study advances understanding of microbial ecology on plant litter under elevated temperature by revealing the functional adaptation of MAGs from hot spring biofilms. In addition, our findings highlight potential for biotechnology application through identification of thermophilic lignocellulose-degrading enzymes. By demonstrating the efficiency of hybrid assembly utilising Illumina-Nanopore reads, we highlight the value of combining multiple sequencing methods for a more thorough exploration of complex microbial communities.

Exogenous additive ferric sulfate regulates sulfur-oxidizing bacteria in cow manure composting to promote carbon fixation

Enhancing carbon fixation in the composting process was of great significance in the era of massive generation of organic solid waste. In this study, the experimental results showed that the contents of dissolved organic matter (DOM) in the experimental group (CT) were 37.58% higher than those in the control group (CK). The CO2 emission peaked on day 5, and the value of CK was 1.34 times that of CT. Significant differences were observed between the contents of sulfur fractions in CT and CK. This phenomenon may be due to the suppression of sulfur-reducing gene expression in CT. On day 51 of composting, the abundance of sulfur-oxidizing bacteria (SOB) Rhodobacter (5.33%), Rhodovulum (14.76%), and Thioclava (23.83%) in CT was higher than that in CK. In summary, the composting fermentation regulated by Fe2(SO4)3 increased the sulfate content, enhanced the expression of sulfur-oxidizing genes and SOB, and ultimately promoted carbon sequestration during composting.

Potential of combined reactor and static composting applications for the removal of heavy metals and antibiotic resistance genes from chicken manure

Chicken manure (CM) can pose a serious threat to environmental and human health, and need to be managed properly. The compost can effectively treat CM. However, there is limited research on the heavy metals and antibiotic resistance genes (ARGs) during compost CM. In this study, the combined application of reactor and static composting (RSC) was used to produce organic fertilizer of CM (OCM), and heavy metals, ARGs and bacterial community structure was investigated. The results show that RSC could be used to produce OCM, and OCM meet the National organic fertilizer standard (NY/T525-2021). Compared to the initial CM, DTPA-Cu, DTPA-Zn, DTPA-Pb, DTPA-Cr, DTPA-Ni and DTPA-As in OCM decreased by 40.83%, 23.73%, 34.27%, 38.62%, 16.26%, and 43.35%, respectively. RSC decreased the relative abundance of ARGs in CM by 84.06%, while the relative abundance of sul1 and ermC increased. In addition, the relative abundance and diversity of ARGs were mainly influenced by the bacterial community, with Actinobacteria, Firmicutes, and Proteobacteria becoming the dominant phyla during composting, and probably being the main carriers and dispersers of most of the ARGs. Network analyses confirmed that Gracilibacillus, Lactobacillus, Nocardiopsis, Mesorhizobium and Salinicoccus were the main potential hosts of ARGs, with the main potential hosts of sul1 and ermC being Mesorhizobium and Salinicoccus. The passivation and physicochemical properties of heavy metals contribute to the removal of ARGs, with sul1 and ermC being affected by the toal heavy metals. Application of RSC allows CM to produce mature, safe organic fertilizer after 32 d and reduces the risk of rebound from ARGs, but the issues of sul1 and ermC gene removal cannot be ignored.

Incorporating microbial inoculants to reduce nitrogen loss during sludge composting by suppressing denitrification and promoting ammonia assimilation

To address the challenge of increasing nitrogen retention in compost, this study investigated the effects of microbial communities on denitrification and ammonia assimilation during sludge composting by inoculating microbial inoculants. The results showed that the retention rates of total Kjeldahl nitrogen (TKN) and humic acid (HA) in MIs group (with microbial inoculants) were 4.94 % and 18.52 % higher than those in the control group (CK), respectively. Metagenomic analysis showed that Actinobacteria and Proteobacteria were identified as main microorganisms contributing to denitrification and ammonia assimilation. The addition of microbial agents altered the structure of the microbial community, which in turn stimulated the expression of functional genes. During cooling period, the ammonia assimilation genes glnA, gltB and gltD in MIs were 15.98 %, 24.84 % and 32.88 % higher than those in CK, respectively. Canonical correspondence analysis revealed a positive correlation between the dominant bacterial genera from the cooling stage to the maturity stage and the levels of NO3--N, NH4+-N, HA, and TKN contents. NH4+-N was positively correlated with HA, indicating NH4+-N might be incorporated into HA. Heat map and network analyses revealed NH4+-N as a key factor affecting functional genes of denitrification and ammonia assimilation, with Nitrospira identified as the core bacteria in the microbial network. Therefore, the addition of microbial agents could increase nitrogen retention and improve compost product quality.

Acceleration of the biodegradation of cationic polyacrylamide by the coupling effect of thermophilic microorganisms and high temperature in hyperthermophilic composting

As a flocculant of sewage sludge, cationic polyacrylamide (CPAM) enters the environment with sludge and exists for a long time, posing serious threats to the environment. Due to the environmental friendliness and high efficiency in the process of organic solid waste treatment, hyperthermophilic composting (HTC) has received increasing attention. However, it is still unclear whether the HTC process can effectively remove CPAM from sludge. In this study, the effects of HTC and conventional thermophilic composting (CTC) on CPAM in sludge were compared and analyzed. At the end of HTC and CTC, the concentrations of CPAM were 278.96 mg kg-1 and 533.89 mg kg-1, respectively, and the removal rates were 72.17% and 46.61%, respectively. The coupling effect of thermophilic microorganisms and high temperature improved the efficiency of HTC and accelerated the biodegradation of CPAM. The diversity and composition of microbial community changed dramatically during HTC. Geobacillus, Thermobispora, Pseudomonas, Brevundimonas, and Bacillus were the dominant bacteria responsible for the high HTC efficiency. To our knowledge, this is the first study in which CPAM-containing sludge is treated using HTC. The ideal performance and the presence of key microorganisms revealed that HTC is feasible for the treatment of CPAM-containing sludge.

Temporal dynamics of microbial composition and antibiotic resistome in fermentation bed culture pig farms across various ages

The discharge from pig farms presents significant challenges to the environment and human health, specifically regarding the dissemination of antimicrobial resistance (AMR). Fermentation bed culture has emerged as an increasingly popular and environmentally friendly pig farming model in China, as it minimizes the release of harmful substances into the environment. However, there remains a limited understanding of the occurrence and dynamics of microbiome and antibiotic resistome in fermentation bed culture. Herein, we collected fermentation bed materials (FBM) from four fermentation bed culture pig farms with varying service ages and investigated their bacterial communities, antibiotic resistance genes (ARGs), mobile genetic elements (MGEs), metal resistance genes (MRGs) and potential antibiotic-resistant bacterial hosts through metagenomics. Pseudomonadota, Actinomycetota, Bacteroidota and Bacillota were identified as the dominant phyla present in the FBM. In total, we detected 258 unique ARGs in the FBM samples, with 79 core ARGs shared by all FBM samples, accounting for 95 % of the total ARG abundance. Our results revealed significant variations in microbial communities and ARG profiles across varying service ages of FBM. Compared to long-term FBW, short-term FBM exhibited higher numbers and abundances of ARGs, MRGs and MGEs, along with higher levels of potential bacterial pathogens and high-risk ARGs. Further analysis of metagenome-assembled genome (MAG) indicated that the putative hosts of ARGs primarily belonged to Pseudomonadota, Actinomycetota and Bacillota. Alarmingly, among the 80 recovered ARG-carrying MAGs, 23 MAGs encoded multi-resistance, including clinically significant species that require urgent attention. Overall, this study provided valuable insights into the temporal patterns of antibiotic resistome and bacterial communities within FBM, enhancing our understanding of FBM in pig farming. The findings could potentially contribute to the development of effective strategies for evaluating and regulating fermentation bed culture practices in pig farming.

Revealing the formation mechanisms of key flavors in fermented broad bean paste

Pixian Douban (PXDB) is a popular Chinese condiment for its distinctive flavor. Broad bean fermentation (Meju) is the most important process in the formation of flavor substances. Key flavors were analyzed qualitatively and quantitatively, and metagenomic technology was applied to study the microbial diversity during broad bean fermentation. In addition, the main metabolic pathways of key flavors were explored. Results indicated that Staphylococcus_gallinarum was the main microorganism in the microbial community, accounting for 39.13%, followed by Lactobacillus_agilis, accounting for 13.76%. Aspergillus_flavus was the fungus with the highest species abundance, accounting for 3.02%. The KEGG Pathway enrichment analysis showed that carbohydrate metabolism and amino acid metabolism were the main metabolic pathways. Glycoside hydrolase and glycosyltransferase genes were the most abundant, accounting for more than 70% of the total number of active enzyme genes. A total of 113 enzymes related to key flavors and 39 microorganisms corresponding to enzymes were annotated. And Staphylococcus_gallinarum, Lactobacillus_agilis, Weissella_confusa, Pediococcus_acidilactici, Staphylococcus_kloosii, Aspergillus_oryzae, and Aspergillus_flavus played a key role in the metabolic pathway. This study reveals the formation mechanism of key flavors in fermented broad bean, it is important for guiding the industrial production of PXDB and improving product quality.

Effect and its mechanism of potassium persulfate on aerobic composting process of vegetable wastes

Vegetable waste (VW) is a potential organic fertilizer resource. As an important way to utilize vegetable wastes, aerobic composting of VW generally has the problems of long fermentation cycle and incomplete decomposition of materials. In this study, 0.3-1.2% of potassium persulfate (KPS) was added to promote the maturity of compost. The results showed that the addition of KPS promoted the degradation of materials, accelerated the temperature rise of compost. KPS also promoted the formation of humic substances (HS). Compared with the control, HS contents of treatments with KPS addition increased by 7.81 ~ 17.52%. Fourier transform infrared (FTIR) spectroscopy and scanning electron microscope (SEM) analysis reveal the mechanism of KPS affecting the composting process: KPS stimulated the degradation of various organic substances such as lignin at high temperature stage, and the degradation of lignin could accelerate the release and decomposition of other components; KPS made the structure of the material looser, with more voids and pores, and more specific surface area of the material, which was more suitable for microbial degradation activities. Therefore, the addition of KPS can promote the decomposition of organic matter in the early stage of composting, accelerate the process of thermophilic phase, and shorten the composting process and improve product maturity.

Macrogenomic analysis of the effects of aqueous-phase from hydrothermal carbonation of sewage sludge on nitrogen metabolism pathways and associated bacterial communities during composting

The effects of aqueous phases (AP) formed from hydrothermal carbonation of sewage sludge (with or without rice husk) as moisture regulators of nitrogen metabolism pathways during composting are currently unclear. Macrogenomic analyses revealed that both APs resulted in notably changes in bacterial communities during composting; increased levels of nitrogen assimilation, nitrification, and denitrification metabolic pathways; and decreased levels of nitrogen mineralization metabolic pathways. Genes associated with nitrogen assimilation and mineralization accounted for 34-41% and 32-40% of the annotated reads related to nitrogen cycling during composting, respectively, representing them as the most abundant nitrogen metabolism processes. The gudB and norB were identified as key genes for nitrogen mineralization and nitrous oxide emission, respectively. This research offers a better understanding of the effects of additional nitrogen sources on nitrogen metabolism pathways during composting.

The fates of antibiotic resistance genes and their association with cell membrane permeability in response to peroxydisulfate during composting

The aims of this study were to use metagenomics to reveal the fates of antibiotic resistance genes (ARGs) during composting under the regulation of peroxydisulfate and clarify the relationship between ARGs and cell membrane permeability. Results showed that peroxydisulfate increased cell membrane permeability by effectively regulating the expression of outer membrane protein and lipopolysaccharide related genes. Besides, it reduced polysaccharides and proteins in extracellular polymer substances by 36% and 58%, respectively, making it easier for intracellular ARGs (i-ARGs) to reach the extracellular environment, among which the absolute intracellular abundance of mphK, Erm(31), and tet(44) decreased to 1.2, 1.0, and 0.89 fold of the control, respectively. Finally, variation partitioning analysis showed that i-ARGs dominated the removal of ARGs. These results revealed that the removal of i-ARGs by activated peroxydisulfate was the key to the removal of ARGs and increased cell membrane permeability played a key role for peroxydisulfate to remove i-ARGs during composting.

Transmission and regulation insights into antibiotic resistance genes in straw-sludge composting system amended with calcium peroxide

This study developed a Fenton-like system by adding calcium peroxide (CaO2) to a composting system containing straw and sludge. The objective was to examine the influence of antibiotic resistance genes (ARGs) and the structure of the bacterial community. The findings indicated that the inclusion of CaO2 facilitated the reduction of ARGs. ARGs abundance in the test group (T) with CaO2 was 19.02% lower than that in the control check group (CK) without CaO2, and the abundance of ARGs in both groups after composting was lower than the initial abundance. Additionally, the structure of bacterial community in both groups underwent significant changes. Redundancy analysis (RDA) revealed that the CaO2-induced Fenton-like reaction predominantly affected temperature, pH, and the bacterial community by means of reactive oxygen species (ROS). In conclusion, the addition of CaO2 enhanced the removal of ARGs from sewage-sludge and improved compost quality in the composting.

Optimizing Straw-Rotting Cultivation for Sustainable Edible Mushroom Production: Composting Spent Mushroom Substrate with Straw Additions

In recent years, the optimization of straw-rotting formulations for cultivating edible mushrooms and the management of the resulting spent mushroom substrate have emerged as new challenges. This study aimed to investigate the composting of spent mushroom substrate produced from mushroom cultivation with various straw additions, under conditions where chicken manure was also used. Parameters measured during the composting process included temperature, pH, electrical conductivity (EC), germination index (GI), moisture, and total nitrogen content. Additionally, changes in nutrient content within the compost piles before and after composting were determined, and the variations in bacterial and fungal communities across different treatments before and after composting were analyzed using 16S rRNA and ITS sequencing. The results indicated that the spent mushroom substrate produced by adding 20% straw during mushroom cultivation was more suitable for composting treatment. The findings suggest that incorporating an appropriate amount of straw in mushroom cultivation can facilitate subsequent composting of spent mushroom substrate, providing an effective strategy for both environmental protection and cost reduction.

The removal performances and evaluation of heavy metals, antibiotics, and resistomes driven by peroxydisulfate amendment during composting

This study aimed to explore the effect of peroxydisulfate on the removal of heavy metals, antibiotics, heavy metal resistance genes (HMRGs), and antibiotic resistance genes (ARGs) during composting. The results showed that peroxydisulfate achieved the passivation of Fe, Mn, Zn, and Cu by promoting their speciation variations, thus reducing their bioavailability. And the residual antibiotics were better degraded by peroxydisulfate. In addition, metagenomics analysis indicated that the relative abundance of most HMRGs, ARGs, and MGEs was more effectively down-regulated by peroxydisulfate. Network analysis confirmed Thermobifida and Streptomyces were dominant potential host bacteria of HMRGs and ARGs, whose relative abundance was also effectively down-regulated by peroxydisulfate. Finally, mantel test showed the significant effect of the evolution of microbial communities and strong oxidation of peroxydisulfate on the removal of pollutants. These results suggested that heavy metals, antibiotics, HMRGs, and ARGs shared a joint fate of being removed driven by peroxydisulfate during composting.

Performances of antibiotic resistance genes profile upon the action of biochar-activated peroxydisulfate in composting

In this study, the amendment of biochar-activated peroxydisulfate during composting to remove antibiotic resistance genes (ARGs) by direct (microbial community succession) and indirect methods (physicochemical factors) was analyzed. When implementing indirect methods, the synergistic effect of peroxydisulfate with biochar optimized the physicochemical habitat of compost, maintaining its moisture within a range of 62.95%-65.71%, and a pH of 6.87-7.73, and causing the compost to mature 18 days earlier than the control groups. The direct methods caused the optimized physicochemical habitat to adjust the microbial communities and reduce the abundance of most of the ARG host bacteria (Thermopolyspora, Thermobifida, and Saccharomonospora), thus inhibiting this substance's amplification. Heatmap analysis confirmed the necessary connection between physicochemical factors, microbial communities, and ARGs. Moreover, a mantel test confirmed the direct significant effect of the microbial communities on ARGs and the indirect significant effect of physicochemical factors on ARGs. The results showed that the abundance of more ARGs was down-regulated at the end of composting and regulated by biochar-activated peroxydisulfate, especially for the abundance of AbaF, tet(44), golS, and mryA, which was significantly decreased by 0.87-1.07 fold. These results provide new insights into the removal of ARGs during composting.

Competition and interaction between DNRA and denitrification in composting ecosystems: insights from metagenomic analysis

This study investigated denitrification and dissimilatory nitrate reduction to ammonium (DNRA) competition for nitrite in composting of sugarcane pith and cow manure. Metagenomic analysis showed that Actinobacteria was the main DNRA microorganism. During heating phase and thermophilic phase, the abundances of denitrification functional genes (nirK and nirS decreased by 40.22% and 98.60%, respectively) and DNRA functional genes (nirB, nirD increased by 195.24% and 176.61%, and nrfA decreased by 45%, respectively) showed different trends. Interestingly, the abundance of nrfA increased by 250% during cooling and maturity phases. Mantel test revealed that competition between denitrification and DNRA microorganisms for NO₂^--N limited the succession of their respective communities (P < 0.01). Network analysis showed that unclassified Solirubrobacterales, Altererythrobacter and Microbacterium were the key microorganisms in DNRA microbial communities. The results provided new insights into the key microorganisms and their driving factors affecting DNRA and nitrogen management in the composting ecosystems.

A novel carbon-nitrogen coupled metabolic pathway promotes the recyclability of nitrogen in composting habitats

This study revealed a novel carbon-nitrogen coupled metabolic pathway. Results showed that the addition of inorganic carbon sources slowed down the decomposition of urea and conserved more nutrients in composting. Metagenomic analysis showed that the main bacteria involved in this new pathway were Actinobacteria, Proteobacteria and Firmicutes. During the late composting period, the dominant genus Microbacteium involved in denitrification accounted for 22.18% in control (CP) and only 0.12% in treatment group (T). Moreover, ureC, rocF, argF, argI, argG were key genes involved in urea cycle. The abundance of functional gene ureC and denitrification genes decreased in thermophilic and cooling phases, respectively. The genes hao, nosZ, ureA and nifH were more closely associated with Chloroflexi_bacterium and Bacillus_paralichenformis. In conclusion, composting habitats with additional inorganic carbon sources could not only weaken denitrification but also allow more nitrogen to be conserved through slow-release urea to improve resource utilization and decrease the environmental risk.

Effects of persulfate-assisted hydrothermal treatment of municipal sludge on aqueous phase characteristics and phytotoxicity

Hydrothermal technology (HT) has received much attention in recent years as a process to convert wet organic waste into hydrochar. The aqueous phase (HTAP) produced by this process is still a burden and has become a bottleneck issue for HT process development. In this study, we provide the first investigation of the HTAP characteristics, phytotoxicity, and their correlation with persulfate (PS) (PS, 2.0 mmol/g TS)-assisted municipal sludge HT. The results showed that PS accelerated the hydrolysis of protein substances and increased the concentration of NH₄⁺ by 13.4% to 190.5% and that of PO₄^3- by 24.2% to 1103.7% in HTAP at hydrothermal temperatures of 120 to 240 °C. PS can reduce the phytotoxicity of HTAP by reducing aldehydes, ketones, N heterocyclic compounds, and particle size and by increasing its humification index. The maximum values of the root length and biomass of pakchoi (Brassica chinensis L.) seedlings occurred when electrical conductivity was 0.2 mS/cm of HTAP. This work provided a new strategy for the selection and design of HTAP management strategies.

Diversity of lignocellulolytic functional genes and heterogeneity of thermophilic microbes during different wastes composting

The goal of this study was to investigate the heterogeneity of thermophilic microorganisms and their lignocellulose-degrading gene diversity during composting. In this study, bagasse pith/dairy manure (BAG) and sawdust/dairy manure (SAW) were used as experimental subjects. The pour plate method indicated that thermophilic bacteria and thermophilic actinobacteria were more culturable than thermophilic fungi. Metagenomics analysis showed that the Actinobacteria, Firmicutes and Proteobacteria were the dominant phyla during composting. In addition, auxiliary activity and glycoside hydrolase families were critical for lignocellulosic degradation, which were found to be more abundant in BAG. As a result, the degradation rates of cellulose, hemicellulose and lignin in BAG (7.36%, 13.99% and 5.68%) were observably higher than those in SAW (6.13%, 12.09% and 2.62%). These findings contribute to understanding how thermophilic microbial communities play a role in the deconstruction of different lignocelluloses and provide a potential strategy to comprehensively utilize the resources of lignocellulosic biomass.

Insight into the evolution characteristics on molecular weight of compost dissolved organic matters using high-performance size exclusion chromatography combined with a two-dimensional correlation analysis

The information on molecular weight (MW) characteristics of DOM and relevant evolution behaviors during composting are limited. In this study, DOM extracted from co-composting of chicken manure and rice husks were comprehensively analyzed by using high-performance size exclusion chromatography (HPSEC) combined with a two-dimensional correlation spectroscopy (2D COS) to explore the evolution characteristics of MW of compost DOM. The HPSEC detected at UV of 254 nm and at fluorescence (FL) Ex/Em wavelengths (315/410, 270/455 nm) all showed a gradual increase in both weight-average and number-average MW for DOM, suggesting that the large MW fractions were continuously generated and polymerized during composting. The 2D COS applied on HPSEC-UV and -FL further identified the key active MW chromophoric (i.e., 0.5, 7.2. 9.5, 26.3, 30.7, and 83.9 kDa) and fluorophoric (i.e., 0.55 and 3.5 kDa) molecules that mainly participated in the transformation processes of compost DOM. Moreover, these active MW species were preferentially formed by the order of small to large molecules. A hetero-2D COS analysis disclosed the change sequence in the order of 0.5 and 7.2 kDa chromophores → 3.5 kDa fluorophores, and the 0.55 and 3.5 kDa fluorophores → 26.3 and 83.9 kDa chromophores.

Combined use of biochar and microbial agent can promote lignocellulose degradation and humic acid formation during sewage sludge-reed straw composting

This study investigated the effects of corn straw biochar (CSB) and effective microorganisms (EM) added individually or combinedly on lignocellulose degradation, compost humification, and microbial communities during sewage sludge-reed straw composting process. All the additive practices were found to significantly elevate the humification degree of compost products. The degradation rates of cellulose, hemicellulose, and lignin in different additive treatments were 20.8-31.2 %, 36.2-44.8 %, and 19.9-25.7 %, respectively, which were greatly higher than those of the control. Compared with the single uses of CSB or EM, the combined use of CSB and EM generated greater promotions in lignin and hemicellulose degradations and increase in humic acid content. By comparing the differences in microbial communities among different treatments, the CSB-EM demonstrated greater increases in activity and diversity of lignocellulose degradation-related microbes, especially for fungus. Lastly, the combined use of CSB and EM was highly recommended as a high-efficient improvement strategy for organic compost production.

Mechanism of sulfur-oxidizing inoculants and nitrate on regulating sulfur functional genes and bacterial community at the thermophilic compost stage

The emission of H₂S odors predominantly occurred at the thermophilic phase of composting, which could cause odorous gas pollution and reduce the fertilizer value of composting products. And sulfur-oxidizing bacteria (SOB) possess oxidative capacities for inorganic sulfur compounds with nitrate applied as electron acceptors. Therefore, this study aimed to assess the effectiveness of combined additives (SOB inoculants and nitrate) on the bacterial community diversity, sulfur-oxidizing gene abundances, and metabolic function prediction at the thermophilic stage of sewage sludge composting. The highest sulfate contents were increased by 1.02-1.34 folds, and the abundances of the sulfur-oxidizing genes (sqr, pdo, sox, and sor) were also enhanced by adding the combined additives. Network patterns revealed a strengthened interaction of inoculants and sulfur functional genes. Microbial functional pathways predicted higher metabolic levels of carbohydrate and amino acid metabolisms with the addition of combined additives, and the predicted relative abundances of sulfur metabolism and nitrogen metabolism were increased by 19.3 ± 2.5% and 24.7 ± 4.1%, respectively. Heatmap analysis showed that the SOB might have a competitive advantage over the indigenous denitrifying bacteria in using nitrate for biochemical reactions. Correlation analyses suggested that sulfur-oxidizing efficacy could be indirectly affected by the environmental parameters through changing the structure of bacterial community. These findings provide new insights toward an optimized inoculation strategy of using SOB and nitrate to enhance sulfur preservation and modulate the bacterial communities at the thermophilic phase of sewage sludge composting.

Recent advances in metagenomic analysis of different ecological niches for enhanced biodegradation of recalcitrant lignocellulosic biomass

Lignocellulose wastes stemming from agricultural residues can offer an excellent opportunity as alternative energy solutions in addition to fossil fuels. Besides, the unrestrained burning of agricultural residues can lead to the destruction of the soil microflora and associated soil sterilization. However, the difficulties associated with the biodegradation of lignocellulose biomasses remain as a formidable challenge for their sustainable management. In this respect, metagenomics can be used as an effective option to resolve such dilemma because of its potential as the next generation sequencing technology and bioinformatics tools to harness novel microbial consortia from diverse environments (e.g., soil, alpine forests, and hypersaline/acidic/hot sulfur springs). In light of the challenges associated with the bulk-scale biodegradation of lignocellulose-rich agricultural residues, this review is organized to help delineate the fundamental aspects of metagenomics towards the assessment of the microbial consortia and novel molecules (such as biocatalysts) which are otherwise unidentifiable by conventional laboratory culturing techniques. The discussion is extended further to highlight the recent advancements (e.g., from 2011 to 2022) in metagenomic approaches for the isolation and purification of lignocellulolytic microbes from different ecosystems along with the technical challenges and prospects associated with their wide implementation and scale-up. This review should thus be one of the first comprehensive reports on the metagenomics-based analysis of different environmental samples for the isolation and purification of lignocellulose degrading enzymes.

Effects of potassium persulfate on nitrogen loss and microbial community during cow manure and corn straw composting

Strong oxidants can reduce the emission of NH₃ during composting. But as a commonly used oxidant, the influence of persulfate on nitrogen transformation during composting is unclear. In this study, the effects of 0.3 %-1.2 % potassium persulfate (PS) on nitrogen losses and microbial community during air-dried cow manure composting were investigated. The results showed that PS could reduce nitrogen losses compared to the control. This was because it decreased pH and the maximum NH₄⁺-N content of treatments, which was beneficial to nitrogen retention. In addition, Pseudoxanthomonas and Chelativorans were enriched compared to the control, which might be associated with NH₄⁺-N transformation and nitrogen fixation. Meanwhile, PS increased the abundance of thermophilic lignocellulose degrading bacteria, and 0.3 % and 0.6 % PS increased the maximum temperature and the duration of the thermophilic period. This study indicated that PS could reduce nitrogen losses in composting and greatly influence nitrogen transforming and lignocellulose degrading bacteria.

Application of persulfate-based oxidation processes to address diverse sustainability challenges: A critical review

Over the past years, persulfate (PS) is widely applied due to their high versatility and efficacy in decontamination and sterilization. While treatment of organic chemicals, remediation of soil and groundwater, sludge treatment, disinfection on pathogen microorganisms have been covered by most published reviews, there are no comprehensive and specific reviews on its application to address diverse sustainability challenges, including solid waste treatment, resources recovery and regeneration of ecomaterials. PS applications mainly rely on direct oxidation by PS itself or the reactive sulfate radical (SO₄^•-) or hydroxyl radical (^•OH) from the activation of peroxodisulfate (PDS, S₂O₈^2-) or peroxymonosulfate (PMS, HSO₅^-) in SO₄^•--based advanced oxidation processes (SO₄^•--AOPs). From a broader perspective of environmental cleanup and sustainability, this review summarizes the various applications of PS except pollutant decontamination and elaborates the possible reaction mechanisms. Additionally, the differences between PS treatment and conventional technologies are highlighted. Challenges, research needs and future prospect are thus discussed to promote the development of the applications of PS-based oxidation processes in niche environmental fields. In all, this review is a call to pay more attention to the possibilities of PS application in practical resource reutilization and environmental protection except widely reported pollutant degradation.

Lignocellulosic depolymerization induced by ionic liquids regulating composting habitats based on metagenomics analysis

The application of ionic liquids with sawdust and fresh dairy manure was studied in composting. The degradation of organic matter (OM), dissolved organic matter (DOM), and lignocellulose was analyzed. The DOM decreased by 14.25 mg/g and 11.11 mg/g in experimental group (ILs) and control group (CK), respectively. OM decreased by 7.32% (CK) and 8.91% (ILs), respectively. The degradation rates of hemicellulose, lignin, and cellulose in ILs (56.62%, 42.01%, and 23.97%) were higher than in CK (38.39%, 39.82%, and 16.04%). Microbial community and carbohydrate-active enzymes (CAZymes) were analyzed based on metagenomics. Metagenomic analysis results showed that ionic liquids enriched Actinobacteria and Proteobacteria in composting. Compared with CK, the total abundance values of GH11, GH6, AA6, and AA3_2 in ILs increased by 13.98%, 10.12%, 11.21%, and 13.68%, respectively. Ionic liquids can improve the lignocellulosic degradation by regulating the environmental physicochemical parameters (temperature, pH, C/N) to promote the growth of Actinobacteria and Proteobacteria and carbohydrate-active enzymes (CAZymes) abundance. Therefore, ionic liquids are a promising additive in lignocellulosic waste composting.

Straw waste promotes microbial functional diversity and lignocellulose degradation during the aerobic process of pig manure in an ectopic fermentation system via metagenomic analysis

This study compares the physicochemical properties, lignocellulose degradation, microbial community composition, and carbohydrate-active enzymes (CAZymes) in ectopic fermentation systems (EFS) of pig manure mixed with either conventional padding (C) or straw waste (A). The degradation rates of cellulose, hemicellulose, and lignin were found to be significantly higher in A (27.72%, 22.72%, and 18.80%, respectively) than in C (21.05%, 16.17%, and 11.69%, respectively) owing to the activities of lignocellulolytic enzymes. Metagenomics revealed that straw addition had a stronger effect on the bacterial community succession than fungi. The abundances of Sphingobacterium, Pseudomonas, and CAZymes were higher in A than in C, as well as the auxiliary activity enzymes, which are crucial for lignocellulose degradation. Redundancy analysis indicates a positive correlation between lignocellulose degradation and Sphingobacterium, Pseudomonas, Bacillus, and Actinobacteria contents. A structural equation model was applied to further verify that the increased microbial functional diversity was the primary driver of lignocellulosic degradation, which could be effectively regulated by the enhanced temperature with straw addition. Replacing traditional padding with straw can thus accelerate lignocellulosic degradation, promote microbial functional diversity, and improve the EFS efficiency.

Metagenomics analysis unraveled the influence of sulfate radical-mediated compost nitrogen transformation process

The mechanism of nitrogen transformation of sulfate radical (SO- 4⋅) in the process of composting is unclear. The objectives of this study were to investigate the influence of SO- 4⋅ on nitrogen biotransformation during composting and to compare the differences in physicochemical parameters and metagenomics analysis between CK (fresh dairy manure and bagasse pith) and PS (the composting raw materials added with potassium persulfate). The results indicated that SO^-₄⋅ guides electron transfer in the conversion of NH⁺₄-N to NO- 3-N and breaches the extracellular polysaccharide (EPS) structure to promote nitrogen removal. Aminomonooxygenase (AMO) and nitrate reductase (NR) levels displayed an interactive relationship between microorganisms and substrates. Metagenomics analysis revealed distinct microbial community compositions and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways between nitrification and denitrification. Correlation analysis indicated that Methanobrevibacter, Bacillus and Pseudomonas were closely related to these processes. This work demonstrates the effect of SO- 4⋅ on nitrogen cycling and retention, and possible mechanisms of nitrification and denitrification during composting.

Insight into the microbial mechanisms for the improvement of composting efficiency driven by Aneurinibacillus sp. LD3

This work explored the microbial mechanisms for the improvement of composting efficiency driven by thermotolerant lignin-degrading bacterium Aneurinibacillus sp. LD3 (LD3). Results showed that LD3 inoculant prolonged the thermophilic period by 4 days, improved the final content of humic acid, total phosphorus (TP), nitrogen, potassium and seed germination index. Inoculating LD3 enhanced the relative abundance of thermotolerant and phosphate-solubilizing microbes including the phyla of Proteobacteria, Bacteroidota, Firmicutes, and Actinobacteriota, and the genus of Bacillus, Thermoactinomyces, and Pseudomonas. Metabolic function analysis showed that sequences involved in carbohydrate and amino acid metabolism were boosted, while sequences associated with human disease were reduced after inoculating LD3. Spearman correlation analysis revealed that Aneurinibacillus has a significant positive correlation with temperature, TP, Bacillus, and Thermoactinomyces. This study provides useful information for understanding the microbial mechanisms of LD3 promoting composting efficiency, and reveals the tremendous potential of LD3 in the resource utilization of organic solid wastes.

In-situ generation of H2O2 by zero valent iron to control depolymerization of lignocellulose in composting niche

Lignocellulosic degradation is a bottleneck of bioconversion during the composting process. In-situ generation of H₂O₂ in the composting system was an ideal method for efficiently promoting lignocellulase degradation, and zero valent iron (ZVI) was concerned because it can generate H₂O₂ by reducing dissolved oxygen. This study focused on the effects of ZVI treatment on lignocellulose degradation, microbial communities, and carbohydrate-active enzymes (CAZymes) genes during composting. Its results indicated that ZVI increased H₂O₂ content during composting, accompanied by the formation of •OH. The degradation rates of lignin, cellulose and hemicellulose in ZVI group (20.77%, 30.35% and 44.7%) were significantly higher than in CK group (17.01%, 26.12% and 38.5%). Metagenomic analysis showed that ZVI induced microbial growth that favored lignocellulose degradation, which increased the abundance of Actinobacteria and Firmicutes but reduced Proteobacteria. At the genus level, the abundance of Thermomonospora, Streptomyces, and Bacillus significantly increased. In addition, glycoside hydrolases and auxiliary activities were important CAZymes families of lignocellulose degradation, and their abundance was higher in the ZVI group. Redundancy analysis showed that the increased H₂O₂ and •OH content was a critical factor in improving lignocellulose degradation. Overall, H₂O₂ as a co-substrate enhanced the enzymatic efficiency, •OH unspecifically attacked lignocellulose, and the increase in functional microbial abundance was the main reason for promoting lignocellulose degradation in composting.

Exploring the effects of heavy metal passivation under Fenton-like reaction on the removal of antibiotic resistance genes during composting

This study aims to explore the succession of microbes carrying antibiotic resistance genes (ARGs), the relationship between heavy metal speciation and ARGs via Fenton-like reaction during composting. The results indicated that the passivation of Cu and Ni was more prominent, and the Fenton-like reaction promoted exceptionally the passivation of Zn, Ni and Mn. The removals of macrolides-lincosamids-streptogramins (MLS), aminoglycoside and tetracycline resistance genes were induced with the composting process, but the relative abundance of bacitracin resistance genes increased. Additionally, Proteobacteria, Firmicutes, Actinobacteria and Bacteroidetes were main carriers and disseminators of ARGs, and the Fenton-like reaction improved the contribution degree of Proteobacteria to bacitracin, tetracycline and aminoglycoside resistance genes. Redundancy analysis revealed the passivation of heavy metal contributed to the removal of tetracycline, MLS and aminoglycoside resistance genes. Conclusively, the Fenton-like reaction promoted the passivation of Zn, Ni and Mn, and controlled the abundance of bacitracin resistance genes in composting.

Green Public Areas and Urban Open Spaces Management: New GreenCAL Tool Algorithms and Circular Economy Implications

Urban Open Spaces (UOS) are green infrastructures that provide social and ecosystem services. Green public areas contribute to mitigation and adaptation strategies for addressing climate changes, but their maintenance has a significant cost. Frequent grass cutting operations must be carried out during growing periods to ensure the safe livability of UOS to citizens. In the present paper, a geo database was developed to map green public areas of the city of Latina (Lazio Region, Central Italy) by using a multisource dataset according to the European INSPIRE Directive. The GreenCAL Tool was implemented. Two algorithms to determine UOS extension and the necessary budget for grass cutting operations are used, considering the contribution of different mowing (i.e., mulcher, lawnmower, or brush cutter) and UOS extension itself (~160 ha). The implemented processing chain allowed us to simulate forestation of abandoned areas and potential CO2 sequestration values. Two different scenarios of maintenance programs were also implemented to reduce more than 60% of operational cost according to: (1) different use of UOS; (2) their position within the urban area; (3) guidelines of Italian working group on public green management; and (4) management of vegetal residues. The management of the latter, derived by mowing, contribute to more than 23% of the budget allocated to maintain UOS. Besides the long-term environmental and health perspective, the short-term impact of the present applied research is relevant for a geomatic approach, green public procurements, as well as land use and climate interactions. The alternative management of UOS discussed in the present paper can also reduce organic waste production if the mowing within the UOS is managed as a resource for agriculture rather than urban waste.