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Jung JY, Lee MH, Nam YH, Kang HK, Jeon JH, Kim JS, Kim EJ. Paucibacter sediminis sp. nov., isolated from sediment in a freshwater pond. Int J Syst Evol Microbiol 2024; 74. [PMID: 38656473 DOI: 10.1099/ijsem.0.006312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024] Open
Abstract
A Gram-stain-negative, aerobic, oxidase-positive, weakly catalase-positive, motile by means of a single polar flagellum, rod-shaped bacterium designated as strain S2-9T was isolated from sediment sampled in Wiyang pond, Republic of Korea. Growth of this strain was observed at 10-40 °C (optimum, 35 °C) and pH 5.5-9.5 (optimum, pH 7.0-8.0) and in the presence of 0-0.5 % NaCl in Reasoner's 2A broth. The major fatty acids (>10 %) of strain S2-9T were C16 : 0 and summed feature 3 (comprising a mixture of C16 : 1 ω7c and/or C16 : 1 ω6c). Ubiquinone-8 was detected as the respiratory quinone. The major polar lipids were phosphatidylethanolamine and phosphatidylglycerol. Strain S2-9T showed the highest 16S rRNA gene sequence similarity to Paucibacter oligotrophus CHU3T (98.7 %), followed by 'Paucibacter aquatile' CR182 (98.4 %), all type strains of Pelomonas species (98.1-98.3 %), Mitsuaria chitosanitabida NBRC 102408T (97.9 %), Kinneretia asaccharophila KIN192T (97.8 %), Mitsuaria chitinivorans HWN-4T (97.4 %), and Paucibacter toxinivorans 2C20T (97.4 %). Phylogenetic trees based on the 16S rRNA gene and whole-genome sequences showed that strain S2-9T formed a tight phylogenetic lineage with Paucibacter species (CHU3T, CR182, and 2C20T). Average nucleotide identity and digital DNA-DNA hybridization values between strain S2-9T and Paucibacter strains were 76.6-79.3% and 19.5-21.5 %, respectively. The genomic DNA G+C content of strain S2-9T was 68.3 mol%. Notably, genes responsible for both sulphur oxidation and reduction and denitrification were found in the genome of strain S2-9T, suggesting that strain S2-9T is involved in the nitrogen and sulphur cycles in pond ecosystems. Based on the polyphasic taxonomic results, strain S2-9T represents a novel species of the genus Paucibacter, for which the name Paucibacter sediminis sp. nov. is proposed. The type strain is S2-9T (= KACC 22267T= JCM 34541T).
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Affiliation(s)
- Ji Young Jung
- Biological Resources Research Department, Nakdonggang National Institute of Biological Resources, Gyeongsangbuk-do 37242, Republic of Korea
| | - Mi Hwa Lee
- Diversity Conservation Research Department, Nakdonggang National Institute of Biological Resources, Gyeongsangbuk-do 37242, Republic of Korea
| | - Young Ho Nam
- Using Technology Development Department, Nakdonggang National Institute of Biological Resources, Gyeongsangbuk-do 37242, Republic of Korea
| | - Hye-Kyeong Kang
- Biological Resources Research Department, Nakdonggang National Institute of Biological Resources, Gyeongsangbuk-do 37242, Republic of Korea
| | - Ju Hyung Jeon
- Biological Resources Research Department, Nakdonggang National Institute of Biological Resources, Gyeongsangbuk-do 37242, Republic of Korea
| | - Jun Sung Kim
- Biological Resources Research Department, Nakdonggang National Institute of Biological Resources, Gyeongsangbuk-do 37242, Republic of Korea
| | - Eui Jin Kim
- Using Technology Development Department, Nakdonggang National Institute of Biological Resources, Gyeongsangbuk-do 37242, Republic of Korea
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Stocker MD, Smith JE, Pachepsky YA, Blaustein RA. Fine-scale spatiotemporal variations in bacterial community diversity in agricultural pond water. Sci Total Environ 2024; 915:170143. [PMID: 38242477 DOI: 10.1016/j.scitotenv.2024.170143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Revised: 01/11/2024] [Accepted: 01/11/2024] [Indexed: 01/21/2024]
Abstract
Microbial communities in surface waters are affected by environmental conditions and can influence changes in water quality. To explore the hypothesis that the microbiome in agricultural waters associates with spatiotemporal variations in overall water quality and, in turn, has implications for resource monitoring and management, we characterized the relationships between the microbiota and physicochemical properties in a model irrigation pond as a factor of sampling time (i.e., 9:00, 12:00, 15:00) and location within the pond (i.e., bank vs. interior sites and cross-sectional depths at 0, 1, and 2 m). The microbial communities, which were defined by 16S rRNA gene sequencing analysis, significantly varied based on all sampling factors (PERMANOVA P < 0.05 for each). While the relative abundances of dominant phyla (e.g., Proteobacteria and Bacteroidetes) were relatively stable throughout the pond, subtle yet significant increases in α-diversity were observed as the day progressed (ANOVA P < 0.001). Key water quality properties that also increased between the morning and afternoon (i.e., pH, dissolved oxygen, and temperature) positively associated with relative abundances of Cyanobacteria, though were inversely proportional to Verrucomicrobia. These properties, among additional parameters such as bioavailable nutrients (e.g., NH3, NO3, PO4), chlorophyll, phycocyanin, conductivity, and colored dissolved organic matter, exhibited significant relationships with relative abundances of various bacterial genera as well. Further investigation of the microbiota in underlying sediments revealed significant differences between the bank and interior sites of the pond (P < 0.05 for α- and β-diversity). Overall, our findings emphasize the importance of accounting for time of day and water sampling location and depth when surveying the microbiomes of irrigation ponds and other small freshwater sources.
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Affiliation(s)
- M D Stocker
- United States Department of Agriculture, Agricultural Research Services, Environmental Microbial and Food Safety Laboratory, Beltsville, MD 20705, USA.
| | - J E Smith
- United States Department of Agriculture, Agricultural Research Services, Environmental Microbial and Food Safety Laboratory, Beltsville, MD 20705, USA; Oak Ridge Institute of Science and Education, Oak Ridge, TN 37830, USA
| | - Y A Pachepsky
- United States Department of Agriculture, Agricultural Research Services, Environmental Microbial and Food Safety Laboratory, Beltsville, MD 20705, USA
| | - R A Blaustein
- University of Maryland, Department of Nutrition and Food Science, College Park, MD 20742, USA
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Hosseini H, Saadaoui I, Cherif M, Amir Siddiqui S, Sayadi S. Exploring the dynamics of algae-associated microbiome during the scale-up process of Tetraselmis sp. microalgae: A metagenomics approach. Bioresour Technol 2024; 393:129991. [PMID: 37949148 DOI: 10.1016/j.biortech.2023.129991] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 11/03/2023] [Accepted: 11/04/2023] [Indexed: 11/12/2023]
Abstract
Microalgae have become a key source of valuable compounds, promoting commercial scale applications. However, biological contamination is one of the most critical problems associated with large scale algal production, especially in open systems such as raceway ponds. The current research is the first to assess the effectiveness of open raceway ponds in maintaining a pure culture of Tetraselmis sp., starting from 20 L culture up to 10,000 L culture. Microbial profiling of each successive stage revealed lower abundance of eukaryotic organisms, whereas bacterial abundance increased notably resulting in a significant decrease in Tetraselmis sp. abundance. Furthermore, several bacteria with algae growth-promoting properties were found throughout the various culture stages including Balneola, Roseovarius, and Marinobacter. However, some algae-suppressive bacteria were evidenced at later stages such as Ulvibacter, Aestuariicoccus, and Defluviimonas. Overall, due to the increasing bacterial concentration, considerations limiting bacterial contamination need to be taken.
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Affiliation(s)
- Hoda Hosseini
- Biotechnology Program, Centre for Sustainable Development, College of Arts and Sciences, Qatar University, P.O. Box 2713, Doha, Qatar
| | - Imen Saadaoui
- Biotechnology Program, Centre for Sustainable Development, College of Arts and Sciences, Qatar University, P.O. Box 2713, Doha, Qatar; Department of Biological and Environmental Sciences, Qatar University, P.O. Box 2713, Doha, Qatar.
| | - Maroua Cherif
- Biotechnology Program, Centre for Sustainable Development, College of Arts and Sciences, Qatar University, P.O. Box 2713, Doha, Qatar
| | - Simil Amir Siddiqui
- Biotechnology Program, Centre for Sustainable Development, College of Arts and Sciences, Qatar University, P.O. Box 2713, Doha, Qatar
| | - Sami Sayadi
- Biotechnology Program, Centre for Sustainable Development, College of Arts and Sciences, Qatar University, P.O. Box 2713, Doha, Qatar
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Romanis CS, Timms VJ, Nebauer DJ, Crosbie ND, Neilan BA. Microbiome analysis reveals Microcystis blooms endogenously seeded from benthos within wastewater maturation ponds. Appl Environ Microbiol 2024; 90:e0158523. [PMID: 38117057 PMCID: PMC10807444 DOI: 10.1128/aem.01585-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Accepted: 10/27/2023] [Indexed: 12/21/2023] Open
Abstract
Toxigenic Microcystis blooms periodically disrupt the stabilization ponds of wastewater treatment plants (WWTPs). Dense proliferations of Microcystis cells within the surface waters (SWs) impede the water treatment process by reducing the treatment efficacy of the latent WWTP microbiome. Further, water quality is reduced when conventional treatment leads to Microcystis cell lysis and the release of intracellular microcystins into the water column. Recurrent seasonal Microcystis blooms cause significant financial burdens for the water industry and predicting their source is vital for bloom management strategies. We investigated the source of recurrent toxigenic Microcystis blooms at Australia's largest lagoon-based municipal WWTP in both sediment core (SC) and SW samples between 2018 and 2020. Bacterial community composition of the SC and SW samples according to 16S rRNA gene amplicon sequencing showed that Microcystis sp. was dominant within SW samples throughout the period and reached peak relative abundances (32%) during the summer. The same Microcystis Amplicon sequence variants were present within the SC and SW samples indicating a potential migratory population that transitions between the sediment water and SWs during bloom formation events. To investigate the potential of the sediment to act as a repository of viable Microcystis cells for recurrent bloom formation, a novel in-vitro bloom model was established featuring sediments and sterilized SW collected from the WWTP. Microcystin-producing Microcystis blooms were established through passive resuspension after 12 weeks of incubation. These results demonstrate the capacity of Microcystis to transition between the sediments and SWs in WWTPs, acting as a perennial inoculum for recurrent blooms.IMPORTANCECyanobacterial blooms are prevalent to wastewater treatment facilities owing to the stable, eutrophic conditions. Cyanobacterial proliferations can disrupt operational procedures through the blocking of filtration apparatus or altering the wastewater treatment plant (WWTP) microbiome, reducing treatment efficiency. Conventional wastewater treatment often results in the lysis of cyanobacterial cells and the release of intracellular toxins which pose a health risk to end users. This research identifies a potential seeding source of recurrent toxigenic cyanobacterial blooms within wastewater treatment facilities. Our results demonstrate the capacity of Microcystis to transition between the sediments and surface waters (SWs) of wastewater treatment ponds enabling water utilities to develop adequate monitoring and management strategies. Further, we developed a novel model to demonstrate benthic recruitment of toxigenic Microcystis under laboratory conditions facilitating future research into the genetic mechanisms behind bloom development.
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Affiliation(s)
- C. S. Romanis
- University of Newcastle, School of Environmental and Life Sciences, Callaghan, Australia
| | - V. J. Timms
- University of Newcastle, School of Environmental and Life Sciences, Callaghan, Australia
- ARC Centre of Excellence for Synthetic Biology, Callaghan, Australia
| | - D. J. Nebauer
- University of Newcastle, School of Environmental and Life Sciences, Callaghan, Australia
| | | | - B. A. Neilan
- University of Newcastle, School of Environmental and Life Sciences, Callaghan, Australia
- ARC Centre of Excellence for Synthetic Biology, Callaghan, Australia
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Mantovani M, Rossi S, Ficara E, Collina E, Marazzi F, Lasagni M, Mezzanotte V. Removal of pharmaceutical compounds from the liquid phase of anaerobic sludge in a pilot-scale high-rate algae-bacteria pond. Sci Total Environ 2024; 908:167881. [PMID: 37865249 DOI: 10.1016/j.scitotenv.2023.167881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 10/09/2023] [Accepted: 10/14/2023] [Indexed: 10/23/2023]
Abstract
This study evaluates the effectiveness of a pilot-scale high-rate algae-bacteria pond (HRAP) to remove pharmaceutical compounds (PhACs) from municipal centrate. The studied PhACs belonged to different classes of synthetic active compounds: antihypertensives, antiepileptics, antidepressants, neuroprotectors, and anti-inflammatory drugs. The HRAP, growing a mixed microalgal consortium made of Chlorella spp. and Scenedesmus spp., was operated in continuous mode (6 days hydraulic retention time) from May to November 2021. Removal efficiencies were high (>85 %) for Sulfamethoxazole and Lamotrigine, promising (65-70 %) for Metoprolol, Fluoxetine, and Diclofenac but low (30-40 %) for Amisulpride, Ofloxacin, Carbamazepine, and Clarithromycin. Propyphenazone and Irbesartan were not removed, and their concentrations increased after the treatment. The combination of abiotic and biotic drivers (mostly global radiation and the synergy between microalgae and bacteria metabolisms) fostered photo and biodegradation processes. Overall, results suggest that microalgae-based systems can be a valuable solution to remove PhACs from wastewater.
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Affiliation(s)
- Marco Mantovani
- Università degli Studi di Milano - Bicocca, Department of Earth and Environmental Sciences (DISAT), P.zza della Scienza 1, 20126 Milano, Italy
| | - Simone Rossi
- Politecnico di Milano, Department of Civil and Environmental Engineering (DICA), P.zza L. da Vinci 32, 20133 Milano, Italy
| | - Elena Ficara
- Politecnico di Milano, Department of Civil and Environmental Engineering (DICA), P.zza L. da Vinci 32, 20133 Milano, Italy
| | - Elena Collina
- Università degli Studi di Milano - Bicocca, Department of Earth and Environmental Sciences (DISAT), P.zza della Scienza 1, 20126 Milano, Italy
| | - Francesca Marazzi
- Università degli Studi di Milano - Bicocca, Department of Earth and Environmental Sciences (DISAT), P.zza della Scienza 1, 20126 Milano, Italy
| | - Marina Lasagni
- Università degli Studi di Milano - Bicocca, Department of Earth and Environmental Sciences (DISAT), P.zza della Scienza 1, 20126 Milano, Italy
| | - Valeria Mezzanotte
- Università degli Studi di Milano - Bicocca, Department of Earth and Environmental Sciences (DISAT), P.zza della Scienza 1, 20126 Milano, Italy.
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Dos Santos Neto AG, Barragán-Trinidad M, Florêncio L, Buitrón G. Strategy for the formation of microalgae-bacteria aggregates in high-rate algal ponds. Environ Technol 2023; 44:1863-1876. [PMID: 34898377 DOI: 10.1080/09593330.2021.2014577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Accepted: 11/28/2021] [Indexed: 06/14/2023]
Abstract
This work studied the formation of aggregates used for wastewater treatment in high-rate algal ponds (HRAP). For this, the establishment of microalgae-bacteria aggregates in these systems was evaluated, considering strategies for the inoculation and start-up. Two HRAP were operated in parallel, at first in batch mode and then in continuous flow. The wastewater treatment was efficient, with removal rates around 80% for COD and N-ammoniacal. Volatile suspended solids and chlorophyll for the culture grew continuously reached a concentration of 548 ± 11 mg L-1 and 7.8 mg L-1, respectively. Larger photogranules were observed when the system was placed in a continuous regime. The protein fraction of extracellular polymeric substances was identified as a determinant in photogranules formation. During the continuous regime, more than 50% of the biomass was higher than 0.2 mm, flocculation efficiency of 78 ± 6%, and the volumetric sludge index of 32 ± 5 mL g-1. The genetic sequencing showed the growth of cyanobacteria in the aggregate and the presence of microalgae from the chlorophytes and diatoms groups in the final biomass.
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Affiliation(s)
- Antonio G Dos Santos Neto
- Laboratory for Research on Advanced Processes for Water Treatment, Instituto de Ingeniería, Unidad Académica Juriquilla, Universidad Nacional Autónoma de México, Querétaro, Mexico
- Department of Civil and Environmental Engineering, Laboratory of Environmental Sanitation, Federal University of Pernambuco, Recife, Brazil
| | - Martín Barragán-Trinidad
- Laboratory for Research on Advanced Processes for Water Treatment, Instituto de Ingeniería, Unidad Académica Juriquilla, Universidad Nacional Autónoma de México, Querétaro, Mexico
| | - Lourdinha Florêncio
- Department of Civil and Environmental Engineering, Laboratory of Environmental Sanitation, Federal University of Pernambuco, Recife, Brazil
| | - Germán Buitrón
- Laboratory for Research on Advanced Processes for Water Treatment, Instituto de Ingeniería, Unidad Académica Juriquilla, Universidad Nacional Autónoma de México, Querétaro, Mexico
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Xiao G, Cheng X, Zhu D, Li Z, Feng L, Peng X, Lu Z, Xie J. Exploring the mechanism of a novel recirculating aquaculture system based on water quality parameters and bacterial communities. Environ Sci Pollut Res Int 2023; 30:34760-34774. [PMID: 36517613 DOI: 10.1007/s11356-022-24585-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 11/30/2022] [Indexed: 06/17/2023]
Abstract
To mitigate the serious environmental problems caused by aquaculture wastewater discharge, the development of improved aquaculture systems with more self-purification capacity and less environmental impact has become essential. A novel recirculating aquaculture system (RAS) with ecological ponds was introduced. However, the mechanism of how the ecological ponds decompose the nutrients from the residual feed and excrement of fish is still unclear. Therefore, we designed a seven-week field experiment to explore the dynamic of water quality and the shift of bacterial communities during the initial stage of the RAS ecosystem to maintain the stability of the system. According to the result, the dissolved oxygen concentration maintained at 5.63 to 10.22 mg·L-1 in aquaculture water, and electrical conductivity increased by 100% to over 800 μs·cm-1. High-throughput sequencing showed that the abundance and diversity of the bacterial communities in sediment samples were significantly higher than in water samples, and the Proteobacteria, Bacteroidetes, Cyanobacteria, and Actinobacteria were dominant phyla in all samples. The relative abundance of ammonia-oxidizing archaea, ammonia-oxidizing bacteria, and nitrite-oxidizing bacteria was lower than 0.10, but rising. Redundancy analysis suggested that TOC, EC, NO3-, and NO2- were the most important factors shaping the bacterial communities in aquaculture water. Our studies assessed the RAS with ecological ponds for the first time based on water quality parameters and bacterial communities, which indicates that decomposition capacity is insufficient but improved at the initial stage of the operation, and potential risks like eutrophication require attention.
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Affiliation(s)
- Gengfeng Xiao
- School of Civil Engineering & Transportation, South China University of Technology, Guangzhou, 510640, China
| | - Xiangju Cheng
- School of Civil Engineering & Transportation, South China University of Technology, Guangzhou, 510640, China
- State Key Laboratory of Subtropical Building Science, South China University of Technology, Guangzhou, 510640, China
| | - Dantong Zhu
- School of Civil Engineering & Transportation, South China University of Technology, Guangzhou, 510640, China.
| | - Zhifei Li
- Pearl River Fisheries Research Institute, Chinese Academy of Fishery Science, Guangzhou, 510380, China
| | - Lijuan Feng
- School of Civil Engineering & Transportation, South China University of Technology, Guangzhou, 510640, China
| | - Xiaoming Peng
- School of Civil Engineering & Transportation, South China University of Technology, Guangzhou, 510640, China
| | - Zhuoyin Lu
- School of Civil Engineering & Transportation, South China University of Technology, Guangzhou, 510640, China
| | - Jun Xie
- Pearl River Fisheries Research Institute, Chinese Academy of Fishery Science, Guangzhou, 510380, China
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Murphy CM, Weller DL, Ovissipour R, Boyer R, Strawn LK. Spatial Versus Nonspatial Variance in Fecal Indicator Bacteria Differs Within and Between Ponds. J Food Prot 2023; 86:100045. [PMID: 36916552 DOI: 10.1016/j.jfp.2023.100045] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Revised: 12/20/2022] [Accepted: 01/18/2023] [Indexed: 01/26/2023]
Abstract
Surface water environments are inherently heterogenous, and little is known about variation in microbial water quality between locations. This study sought to understand how microbial water quality differs within and between Virginia ponds. Grab samples were collected twice per week from 30 sampling sites across nine Virginia ponds (n = 600). Samples (100 mL) were enumerated for total coliform (TC) and Escherichia coli (EC) levels, and physicochemical, weather, and environmental data were collected. Bayesian models of coregionalization were used to quantify the variance in TC and EC levels attributable to spatial (e.g., site, pond) versus nonspatial (e.g., date, pH) sources. Mixed-effects Bayesian regressions and conditional inference trees were used to characterize relationships between data and TC or EC levels. Analyses were performed separately for each pond with ≥3 sampling sites (5 intrapond) while one interpond model was developed using data from all sampling sites and all ponds. More variance in TC levels were attributable to spatial opposed to nonspatial sources for the interpond model (variance ratio [VR] = 1.55) while intrapond models were pond dependent (VR: 0.65-18.89). For EC levels, more variance was attributable to spatial sources in the interpond model (VR = 1.62), compared to all intrapond models (VR < 1.0) suggesting that more variance is attributable to nonspatial factors within individual ponds and spatial factors when multiple ponds are considered. Within each pond, TC and EC levels were spatially independent for sites 56-87 m apart, indicating that different sites within the same pond represent different water quality for risk management. Rainfall was positively and pH negatively associated with TC and EC levels in both inter- and intrapond models. For all other factors, the direction and strength of associations varied. Factors driving microbial dynamics in ponds appear to be pond-specific and differ depending on the spatial scale considered.
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Affiliation(s)
- Claire M Murphy
- Department of Food Science and Technology, Virginia Tech, Blacksburg, VA 24061, USA
| | - Daniel L Weller
- Department of Food Science and Technology, Virginia Tech, Blacksburg, VA 24061, USA; Department of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, NY USA
| | - Reza Ovissipour
- Department of Food Science and Technology, Virginia Tech Seafood Agricultural Research and Extension Center, Hampton, VA 23669, USA
| | - Renee Boyer
- Department of Food Science and Technology, Virginia Tech, Blacksburg, VA 24061, USA
| | - Laura K Strawn
- Department of Food Science and Technology, Virginia Tech, Blacksburg, VA 24061, USA.
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Anupong W, Jutamas K, On-Uma R, Alshiekheid M, Sabour A, Krishnan R, Lan Chi NT, Pugazhendhi A, Brindhadevi K. Bioremediation competence of Aspergillus flavus DDN on pond water contaminated by mining activities. Chemosphere 2022; 304:135250. [PMID: 35675871 DOI: 10.1016/j.chemosphere.2022.135250] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2022] [Revised: 05/23/2022] [Accepted: 06/03/2022] [Indexed: 06/15/2023]
Abstract
This research was performed to evaluate the possibilities of reducing the physicochemical properties of polluted pond water situated around the magnesite mine tailing through indigenous metal tolerant fungi. The physicochemical analysis results revealed that most of the physicochemical properties of pond water sample were crossing the permissible limits. From the muddy pond soil sample, Aspergillus flavus DDN was identified (through molecular characterization) as predominant metal tolerant fungal strain and it showed resistance to Cr(VI), Pb(II), Zn(II), Cd(II), and Mg(IV) up to 1000 μg mL-1 concentrations. This strain also effectively reduced (through biosorption) these metals in a short duration of the bioremediation process. In a lab-scale bioremediation study, the A. flavus DDN significantly reduced most of the physicochemical parameters crossing the permissible limit in polluted pond water in the presence of FM1 minimal media in 10 days of incubation. The dissolved oxygen level was significantly increased up to 74.91% from 5.86 ± 0.39 to 10.25 ± 0.95 in 10 days of treatment. The metal reduction and other physicochemical properties reduction were directly related to the biomass of A. flavus DDN. These findings suggest that A. flavus DDN can remove pollutants from magnesite mine tailing polluted pond water because elevated fungal biomass resulted in the highest percentage of pollutant reduction from the sample.
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Affiliation(s)
- Wongchai Anupong
- Department of Agricultural Economy and Development, Faculty of Agriculture, Chiang Mai University, 50200, Thailand; Innovative Agriculture Research Center, Faculty of Agriculture, Chiang Mai University, Chiang Mai, 50200, Thailand
| | - Khumchai Jutamas
- Department of Plant and Soil Sciences, Faculty of Agriculture, Chiang Mai University, 50200, Thailand; Innovative Agriculture Research Center, Faculty of Agriculture, Chiang Mai University, Chiang Mai, 50200, Thailand
| | - Ruangwong On-Uma
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, 50200, Thailand; Innovative Agriculture Research Center, Faculty of Agriculture, Chiang Mai University, Chiang Mai, 50200, Thailand
| | - Maha Alshiekheid
- Department of Botany and Microbiology, College of Science, King Saud University, PO Box -2455, Riyadh, 11451, Saudi Arabia
| | - Amal Sabour
- Department of Botany and Microbiology, College of Science, King Saud University, PO Box -2455, Riyadh, 11451, Saudi Arabia
| | - Ramakrishnan Krishnan
- Department of Business, Harrisburg University of Science and Technology, Harrisburg, PA, 17101, USA
| | - Nguyen Thuy Lan Chi
- School of Engineering and Technology, Van Lang University, Ho Chi Minh City, Vietnam.
| | - Arivalagan Pugazhendhi
- Emerging Materials for Energy and Environmental Applications Research Group, School of Engineering and Technology, Van Lang University, Ho Chi Minh City, Vietnam
| | - Kathirvel Brindhadevi
- Center for Transdisciplinary Research (CFTR), Department of Pharmacology, Saveetha Dental College, Saveetha Institute of Medical and Technical Sciences, Saveetha University, Chennai, India.
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Valenca R, Garcia L, Espinosa C, Flor D, Mohanty SK. Can water composition and weather factors predict fecal indicator bacteria removal in retention ponds in variable weather conditions? Sci Total Environ 2022; 838:156410. [PMID: 35662595 DOI: 10.1016/j.scitotenv.2022.156410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Revised: 05/16/2022] [Accepted: 05/30/2022] [Indexed: 06/15/2023]
Abstract
Retention ponds provide benefits including flood control, groundwater recharge, and water quality improvement, but changes in weather conditions could limit the effectiveness in improving microbial water quality metrics. The concentration of fecal indicator bacteria (FIB), which is used as regulatory standards to assess microbial water quality in retention ponds, could vary widely based on many factors including local weather and influent water chemistry and composition. In this critical review, we analyzed 7421 data collected from 19 retention ponds across North America listed in the International Stormwater BMP Database to examine if variable FIB removal in the field conditions can be predicted based on changes in these weather and water composition factors. Our analysis confirms that FIB removal in retention ponds is sensitive to weather conditions or seasons, but temperature and precipitation data may not describe the variable FIB removal. These weather conditions affect suspended solid and nutrient concentrations, which in turn could affect FIB concentration in the ponds. Removal of total suspended solids and total P only explained 5% and 12% of FIB removal data, respectively, and TN removal had no correlation with FIB removal. These results indicate that regression-based modeling with a single parameter as input has limited use to predict FIB removal due to the interactive nature of their effects on FIB removal. In contrast, machine learning algorithms such as the random forest method were able to predict 65% of the data. The overall analysis indicates that the machine learning model could play a critical role in predicting microbial water quality of surface waters under complex conditions where the variation of both water composition and weather conditions could deem regression-based modeling less effective.
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Affiliation(s)
- Renan Valenca
- Department of Civil and Environmental Engineering, University of California Los Angeles, CA, USA.
| | - Lilly Garcia
- Department of Civil and Environmental Engineering, University of California Los Angeles, CA, USA
| | - Christina Espinosa
- Department of Civil and Environmental Engineering, University of California Los Angeles, CA, USA
| | - Dilara Flor
- Department of Civil and Environmental Engineering, University of California Los Angeles, CA, USA
| | - Sanjay K Mohanty
- Department of Civil and Environmental Engineering, University of California Los Angeles, CA, USA.
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11
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Gregson BH, Bani A, Steinfield L, Holt D, Whitby C. Anaerobes and methanogens dominate the microbial communities in water harvesting ponds used by Kenyan rural smallholder farmers. Sci Total Environ 2022; 819:153040. [PMID: 35026246 DOI: 10.1016/j.scitotenv.2022.153040] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Revised: 01/06/2022] [Accepted: 01/06/2022] [Indexed: 06/14/2023]
Abstract
Many rural smallholder farmers in Kenya use water-harvesting ponds, to collect rainwater, as sustainable sources of water for domestic and agricultural purposes. There is currently limited information regarding the microbial ecology in these ponds. Here, we used High Throughput Sequencing (HTS) to characterize the microorganisms present (including potential pathogens and indicator species) alongside ion chromatography to measure water chemistry (anion and cation concentration). Fluoride and magnesium concentration were the strongest predictor variables of the microbial community. Obligately or facultatively anaerobic bacterial genera (e.g. Spirochaeta and Opitutus) were abundant within the bacterial community, whilst Woesearchaeota and methanogens dominated the archaeal community. This suggests the water in the ponds is hypoxic or anoxic, and if used for irrigation, may potentially impact crop yield and viability. In addition, the opportunistic pathogen non-tuberculous mycobacteria (NTM), Mycobacterium fortuitum was found, comprising >1% of the bacterial community, suggesting a potential human health risk. Here we suggest low-cost changes to pond management, to improve or ameliorate pond anoxia and remove pathogens to benefit the livelihoods and welfare of these farms. This study also shows the applicability of HTS to broadly screen the microbial communities, assess water quality, and identify potentially pathogenic groups.
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Affiliation(s)
- Benjamin H Gregson
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester CO4 3SQ, UK
| | - Alessia Bani
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester CO4 3SQ, UK
| | | | - Diane Holt
- Center for Enterprise and Entrepreneurship, Leeds University Business School, Leeds LS2 9JT, UK
| | - Corinne Whitby
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester CO4 3SQ, UK.
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12
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Zhou A, Xie S, Tang H, Zhang L, Zhang Y, Zuo Z, Li X, Zhao W, Xu G, Zou J. The dynamic of the potential pathogenic bacteria, antibiotic-resistant bacteria, and antibiotic resistance genes in the water at different growth stages of grass carp pond. Environ Sci Pollut Res Int 2022; 29:23806-23822. [PMID: 34817812 DOI: 10.1007/s11356-021-17578-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Accepted: 11/12/2021] [Indexed: 06/13/2023]
Abstract
Pond aquaculture has become the most important and broadest breeding model in China, and an extremely important source of aquatic products, but the potential hazard factors of potential pathogenic bacteria (PPB), antibiotic resistance bacteria (ARB), and antibiotic resistance genes (ARGs) in aquaculture environment are largely invisible. In the present study, the bacterial communities in the larvae, juvenile, rearing, and harvesting culture stages of great grass carp (Ctenopharyngodon idellus) ponds were investigated and the structure of microbial flora analysis showed that the larvae culture stage has the highest abundance and the most dominant phyla were Proteobacteria (27.8%). A total of 123 significant Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway annotations and the relative abundance of nine bacterial phenotypes implied that the larvae culture stage had the most abundance of pathogenic potential and mobile elements. The correlation analyses of environmental factors showed that temperature, stocking density, pH, and transparency showed the significant impacts on both the distribution of microbiome and the PPB. More importantly, a total of 40 ARB were identified, and 16 ARGs have the detection rates of 100%, which revealed that they are widely distributed and highly enriched in the aquaculture production. Notably, this is the first robust report to analyze and understand the PPB, ARB, and ARGs characteristics and dynamic changes in the pond aquaculture.
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Affiliation(s)
- Aiguo Zhou
- University Joint Laboratory of Guangdong Province, Hong Kong and Macao Region on Marine Bioresource Conservation and Exploitation, Guangdong Laboratory for Lingnan Modern Agriculture, College of Marine Sciences, South China Agricultural University, Guangzhou, 510642, China
- Canadian Food Inspection Agency, 93 Mount Edward Road, Charlottetown, PEI, C1A 5T1, Canada
| | - Shaolin Xie
- University Joint Laboratory of Guangdong Province, Hong Kong and Macao Region on Marine Bioresource Conservation and Exploitation, Guangdong Laboratory for Lingnan Modern Agriculture, College of Marine Sciences, South China Agricultural University, Guangzhou, 510642, China
| | - Huijuan Tang
- University Joint Laboratory of Guangdong Province, Hong Kong and Macao Region on Marine Bioresource Conservation and Exploitation, Guangdong Laboratory for Lingnan Modern Agriculture, College of Marine Sciences, South China Agricultural University, Guangzhou, 510642, China
| | - Li Zhang
- College of Fisheries, Huazhong Agricultural University, Wuhan, 430070, China
| | - Yue Zhang
- Departments of Neurology, School of Medicine, Johns Hopkins University, Baltimore, MD, 21287, USA
| | - Zhiheng Zuo
- University Joint Laboratory of Guangdong Province, Hong Kong and Macao Region on Marine Bioresource Conservation and Exploitation, Guangdong Laboratory for Lingnan Modern Agriculture, College of Marine Sciences, South China Agricultural University, Guangzhou, 510642, China
| | - Xiang Li
- Canadian Food Inspection Agency, 93 Mount Edward Road, Charlottetown, PEI, C1A 5T1, Canada
| | - Wenyu Zhao
- Key Laboratory of Dongting Lake Aquatic Eco-Environmental Control and Restoration of Hunan Province, School of Hydraulic Engineering, Changsha University of Science & Technology, Changsha, 410114, China
| | - Guohuan Xu
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China.
| | - Jixing Zou
- University Joint Laboratory of Guangdong Province, Hong Kong and Macao Region on Marine Bioresource Conservation and Exploitation, Guangdong Laboratory for Lingnan Modern Agriculture, College of Marine Sciences, South China Agricultural University, Guangzhou, 510642, China.
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13
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Kluge M, Wurzbacher C, Wauthy M, Clemmensen KE, Hawkes JA, Einarsdottir K, Stenlid J, Peura S. Community composition of aquatic fungi across the thawing Arctic. Sci Data 2021; 8:221. [PMID: 34413318 PMCID: PMC8377128 DOI: 10.1038/s41597-021-01005-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Accepted: 07/29/2021] [Indexed: 02/07/2023] Open
Abstract
Thermokarst activity at permafrost sites releases considerable amounts of ancient carbon to the atmosphere. A large part of this carbon is released via thermokarst ponds, and fungi could be an important organismal group enabling its recycling. However, our knowledge about aquatic fungi in thermokarstic systems is extremely limited. In this study, we collected samples from five permafrost sites distributed across circumpolar Arctic and representing different stages of permafrost integrity. Surface water samples were taken from the ponds and, additionally, for most of the ponds also the detritus and sediment samples were taken. All the samples were extracted for total DNA, which was then amplified for the fungal ITS2 region of the ribosomal genes. These amplicons were sequenced using PacBio technology. Water samples were also collected to analyze the chemical conditions in the ponds, including nutrient status and the quality and quantity of dissolved organic carbon. This dataset gives a unique overview of the impact of the thawing permafrost on fungal communities and their potential role on carbon recycling.
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Affiliation(s)
- Mariana Kluge
- Department of Forest Mycology and Plant Pathology, Science for Life laboratory, Swedish University of Agricultural Sciences, Uppsala, Sweden.
| | - Christian Wurzbacher
- Department of Civil, Geo and Environmental Engineering, Technische Universität München, Munich, Germany
| | - Maxime Wauthy
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, Saguenay, Québec, Canada
- Centre for Northern Studies (CEN), Université Laval, Québec, Québec, Canada
| | - Karina Engelbrecht Clemmensen
- Department of Forest Mycology and Plant Pathology, Science for Life laboratory, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | | | - Karolina Einarsdottir
- Limnology, Department of Ecology and Genetics, EBC, Uppsala University, Uppsala, Sweden
| | - Jan Stenlid
- Department of Forest Mycology and Plant Pathology, Science for Life laboratory, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Sari Peura
- Department of Forest Mycology and Plant Pathology, Science for Life laboratory, Swedish University of Agricultural Sciences, Uppsala, Sweden
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14
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Gajewski K. Multiple drivers of ecological change in Arctic lakes and ponds. PLoS One 2021; 16:e0254257. [PMID: 34330143 PMCID: PMC8324333 DOI: 10.1371/journal.pone.0254257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Accepted: 05/18/2021] [Indexed: 11/18/2022] Open
Abstract
Griffiths et al. (2017) analyzed several ponds and lakes from the Cape Herschel region of Ellesmere Island in order to “…explicitly examine the role of ice cover as the dominant driver of diatom assemblage change…”. I reanalyze their data and suggest that their classification scheme, that they propose is due to differences in ice cover seasonality (“warm”, “cool”, “cold”, and “oasis”), is confounded with other morphological and chemical variables that better explain the differences between the groups. The “cold” sites are the deepest (lakes) and differ from the small, shallow ponds that occasionally dry, which would therefore have different diatom assemblages and histories. The “oasis” sites are nutrient enriched and probably have more stable water supplies, thereby enabling an aquatic flora providing habitats for diatoms. A key part of their interpretation is that “warm” sites have responded more rapidly to recent climate change than “cold” or “cool” sites, but their chronologies do not allow for such a conclusion. There is no clear difference between “cool” and “warm” sites, and problems in dating the sequences means inferences about their histories are not supported by data. Their results, which are restricted to the past century, are contradicted by a Holocene sequence from the region.
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Affiliation(s)
- Konrad Gajewski
- Laboratory for Paleoclimatology & Climatology, Department of Geography, Environment & Geomatics, University of Ottawa, Ottawa, Ontario Canada
- * E-mail:
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15
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Sabu EA, Gonsalves MJ, Sreepada RA, Shivaramu MS, Ramaiah N. Evaluation of the Physiological Bacterial Groups in a Tropical Biosecured, Zero-Exchange System Growing Whiteleg Shrimp, Litopenaeus vannamei. Microb Ecol 2021; 81:335-346. [PMID: 32880700 DOI: 10.1007/s00248-020-01575-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Accepted: 08/10/2020] [Indexed: 06/11/2023]
Abstract
To elucidate the individual and multiple roles of physiological bacterial groups involved in biogeochemical cycles of carbon, nitrogen, phosphorus and sulfur, the changes in the abundance of aerobic bacteria (heterotrophs, methane oxidizers, ammonia oxidizers, sulfur oxidizers, phosphate solubilizers, phosphate accumulators) and anaerobic bacteria (total anaerobes, nitrate reducers, denitrifiers and sulfate reducers) were investigated in a biosecured, zero-exchange system stocked with whiteleg shrimp, Litopenaeus vannamei for one production cycle. Key water quality parameters during the 96-day production cycle fell within the normal range for L. vannamei culture. Results of Spearman's correlation matrix revealed that different sets of variables correlated at varying levels of significance of the interrelationships between bacterial abundances and water quality parameters. The three nitrogenous species (ammonia, nitrite and nitrate) strongly influenced the physiological bacterial groups' abundance. The strong relationship of bacterial groups with phytoplankton biomass and abundance clearly showed the trophic interconnections in nutrient exchange/recycling. Canonical correspondence analysis performed to assess the total variation revealed that the three dissolved nitrogen species followed by salinity, temperature, phytoplankton biomass and pH collectively accounted for as much as 82% of the total variation. In conclusion, the results of the study revealed that the major drivers that interweaved biogeochemical cycles are the three dissolved nitrogen species, which microbially mediated various aerobic-anaerobic assimilation/dissimilation processes in the pond ecosystem. Considering the pond microbial ecology becoming an important management tool where applied research could improve the economic and environmental sustainability of the aquaculture industry, the findings of the present study are practically relevant.
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Affiliation(s)
- Elaine A Sabu
- Biological Oceanography Division, CSIR-National Institute of Oceanography, Dona Paula, Goa, 403 004, India
- School of Earth, Ocean and Atmospheric Sciences, Goa University, Taleigao Plateau, Goa, 403 206, India
| | - Maria Judith Gonsalves
- Biological Oceanography Division, CSIR-National Institute of Oceanography, Dona Paula, Goa, 403 004, India.
| | - R A Sreepada
- Biological Oceanography Division, CSIR-National Institute of Oceanography, Dona Paula, Goa, 403 004, India
| | - Mamatha S Shivaramu
- Biological Oceanography Division, CSIR-National Institute of Oceanography, Dona Paula, Goa, 403 004, India
- Department of Food Protectants & Infestation Control, CSIR-Central Food Technological Research Institute, Mysuru, Karnataka, 570 020, India
| | - N Ramaiah
- Biological Oceanography Division, CSIR-National Institute of Oceanography, Dona Paula, Goa, 403 004, India
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16
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Tuan LC, Thanh LTH, Duc Huy N, Thuy Trang DT, Nhat Le BN, Nhat Linh NL, Khanh NV, Nu Bao Tien HT, Hoang Loc N. Antagonistic Activity Against Pathogenic Vibrio Isolates of Bioflocculant-Producing Bacteria Isolated from Shrimp Ponds. Pak J Biol Sci 2021; 24:1322-1332. [PMID: 34989209 DOI: 10.3923/pjbs.2021.1322.1332] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
<b>Background and Objectives:</b> Biofloc culture system has been used in aquaculture as an effective technology for water treatment due to many advantages of being biodegradable and environmentally friendly. This study aims to isolate bioflocculant-producing bacteria antagonistic to pathogenic <i>Vibrio</i> species from Pacific white shrimp ponds in Thua Thien Hue, Vietnam. <b>Materials and Methods:</b> <i>Vibrio</i> isolates were isolated by screening on medium with and without antibiotics. The resistance of <i>Vibrio</i> to antimicrobial agents was assessed by Minimum Inhibitory Concentration (MIC). Bioflocs formed in shrimp cultures were used to screen bioflocculant-producing bacteria. The identification of bacteria was performed by 16S rRNA sequencing. The flocculating activity was measured by a test with kaolin clay suspension. To evaluate the antagonistic activity against <i>Vibrio</i> isolates, an agar well diffusion assay was used. <b>Results:</b> The screening results have found that <i>Vibrio</i> isolates such as <i>V. parahaemolyticus</i> KS02 and <i>V. alginolyticus</i> KS08 from shrimp ponds can be resistant to many antibiotics with the highest resistance rate up to 66.49%. Four bioflocculant-producing isolates were obtained and identified as <i>Bacillus</i> species. Among them, <i>Bacillus velezensis </i>B9 when grown in YPG medium supplemented with 3% sucrose and 0.7% peptone had the highest bioflocculation with an activity of 49.2%. Two isolates of <i>B. subtilis</i> B2 and <i>Bacillus</i> sp. B6 had quite strong antagonistic activities against vibriosis shown in the zones of inhibition on the assay plates with diameters of about 20 mm. <b>Conclusion:</b> The present study has found some <i>Bacillus</i> isolates had bioflocculant-producing efficiency and inhibited pathogenic <i>Vibrio</i> bacteria. These <i>Bacillus</i> isolates will potentially be used as inoculum for bioflocculation to improve shrimp production.
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17
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Solaiman S, Allard SM, Callahan MT, Jiang C, Handy E, East C, Haymaker J, Bui A, Craddock H, Murray R, Kulkarni P, Anderson-Coughlin B, Craighead S, Gartley S, Vanore A, Duncan R, Foust D, Taabodi M, Sapkota A, May E, Hashem F, Parveen S, Kniel K, Sharma M, Sapkota AR, Micallef SA. Longitudinal Assessment of the Dynamics of Escherichia coli, Total Coliforms, Enterococcus spp., and Aeromonas spp. in Alternative Irrigation Water Sources: a CONSERVE Study. Appl Environ Microbiol 2020; 86:e00342-20. [PMID: 32769196 PMCID: PMC7531960 DOI: 10.1128/aem.00342-20] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2020] [Accepted: 08/02/2020] [Indexed: 11/20/2022] Open
Abstract
As climate change continues to stress freshwater resources, we have a pressing need to identify alternative (nontraditional) sources of microbially safe water for irrigation of fresh produce. This study is part of the center CONSERVE, which aims to facilitate the adoption of adequate agricultural water sources. A 26-month longitudinal study was conducted at 11 sites to assess the prevalence of bacteria indicating water quality, fecal contamination, and crop contamination risk (Escherichia coli, total coliforms [TC], Enterococcus, and Aeromonas). Sites included nontidal freshwater rivers/creeks (NF), a tidal brackish river (TB), irrigation ponds (PW), and reclaimed water sites (RW). Water samples were filtered for bacterial quantification. E. coli, TC, enterococci (∼86%, 98%, and 90% positive, respectively; n = 333), and Aeromonas (∼98% positive; n = 133) were widespread in water samples tested. Highest E. coli counts were in rivers, TC counts in TB, and enterococci in rivers and ponds (P < 0.001 in all cases) compared to other water types. Aeromonas counts were consistent across sites. Seasonal dynamics were detected in NF and PW samples only. E. coli counts were higher in the vegetable crop-growing (May-October) than nongrowing (November-April) season in all water types (P < 0.05). Only one RW and both PW sites met the U.S. Food Safety Modernization Act water standards. However, implementation of recommended mitigation measures of allowing time for microbial die-off between irrigation and harvest would bring all other sites into compliance within 2 days. This study provides comprehensive microbial data on alternative irrigation water and serves as an important resource for food safety planning and policy setting.IMPORTANCE Increasing demands for fresh fruit and vegetables, a variable climate affecting agricultural water availability, and microbial food safety goals are pressing the need to identify new, safe, alternative sources of irrigation water. Our study generated microbial data collected over a 2-year period from potential sources of irrigation (rivers, ponds, and reclaimed water sites). Pond water was found to comply with Food Safety Modernization Act (FSMA) microbial standards for irrigation of fruit and vegetables. Bacterial counts in reclaimed water, a resource that is not universally allowed on fresh produce in the United States, generally met microbial standards or needed minimal mitigation. We detected the most seasonality and the highest microbial loads in river water, which emerged as the water type that would require the most mitigation to be compliant with established FSMA standards. This data set represents one of the most comprehensive, longitudinal analyses of alternative irrigation water sources in the United States.
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Affiliation(s)
- Sultana Solaiman
- Department of Plant Science and Landscape Architecture, University of Maryland, College Park, Maryland, USA
| | - Sarah M Allard
- Maryland Institute for Applied and Environmental Health, School of Public Health, University of Maryland, College Park, Maryland, USA
| | - Mary Theresa Callahan
- Department of Plant Science and Landscape Architecture, University of Maryland, College Park, Maryland, USA
| | - Chengsheng Jiang
- Maryland Institute for Applied and Environmental Health, School of Public Health, University of Maryland, College Park, Maryland, USA
| | - Eric Handy
- Environmental Microbial and Food Safety Laboratory, USDA-ARS, Beltsville, Maryland, USA
| | - Cheryl East
- Environmental Microbial and Food Safety Laboratory, USDA-ARS, Beltsville, Maryland, USA
| | - Joseph Haymaker
- Department of Agriculture, Food and Resource Sciences, University of Maryland Eastern Shore, Princess Anne, Maryland, USA
| | - Anthony Bui
- Maryland Institute for Applied and Environmental Health, School of Public Health, University of Maryland, College Park, Maryland, USA
| | - Hillary Craddock
- Maryland Institute for Applied and Environmental Health, School of Public Health, University of Maryland, College Park, Maryland, USA
| | - Rianna Murray
- Maryland Institute for Applied and Environmental Health, School of Public Health, University of Maryland, College Park, Maryland, USA
| | - Prachi Kulkarni
- Maryland Institute for Applied and Environmental Health, School of Public Health, University of Maryland, College Park, Maryland, USA
| | | | - Shani Craighead
- Department of Animal and Food Sciences, University of Delaware, Newark, Delaware, USA
| | - Samantha Gartley
- Department of Animal and Food Sciences, University of Delaware, Newark, Delaware, USA
| | - Adam Vanore
- Department of Animal and Food Sciences, University of Delaware, Newark, Delaware, USA
| | - Rico Duncan
- Department of Agriculture, Food and Resource Sciences, University of Maryland Eastern Shore, Princess Anne, Maryland, USA
| | - Derek Foust
- Department of Agriculture, Food and Resource Sciences, University of Maryland Eastern Shore, Princess Anne, Maryland, USA
| | - Maryam Taabodi
- Department of Agriculture, Food and Resource Sciences, University of Maryland Eastern Shore, Princess Anne, Maryland, USA
| | - Amir Sapkota
- Maryland Institute for Applied and Environmental Health, School of Public Health, University of Maryland, College Park, Maryland, USA
| | - Eric May
- Department of Agriculture, Food and Resource Sciences, University of Maryland Eastern Shore, Princess Anne, Maryland, USA
| | - Fawzy Hashem
- Department of Agriculture, Food and Resource Sciences, University of Maryland Eastern Shore, Princess Anne, Maryland, USA
| | - Salina Parveen
- Department of Agriculture, Food and Resource Sciences, University of Maryland Eastern Shore, Princess Anne, Maryland, USA
| | - Kalmia Kniel
- Department of Animal and Food Sciences, University of Delaware, Newark, Delaware, USA
| | - Manan Sharma
- Environmental Microbial and Food Safety Laboratory, USDA-ARS, Beltsville, Maryland, USA
| | - Amy R Sapkota
- Maryland Institute for Applied and Environmental Health, School of Public Health, University of Maryland, College Park, Maryland, USA
| | - Shirley A Micallef
- Department of Plant Science and Landscape Architecture, University of Maryland, College Park, Maryland, USA
- Center for Food Safety and Security Systems, University of Maryland, College Park, Maryland, USA
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18
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Kust A, Řeháková K, Vrba J, Maicher V, Mareš J, Hrouzek P, Chiriac MC, Benedová Z, Tesařová B, Saurav K. Insight into Unprecedented Diversity of Cyanopeptides in Eutrophic Ponds Using an MS/MS Networking Approach. Toxins (Basel) 2020; 12:E561. [PMID: 32878042 PMCID: PMC7551678 DOI: 10.3390/toxins12090561] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Revised: 08/24/2020] [Accepted: 08/28/2020] [Indexed: 12/18/2022] Open
Abstract
Man-made shallow fishponds in the Czech Republic have been facing high eutrophication since the 1950s. Anthropogenic eutrophication and feeding of fish have strongly affected the physicochemical properties of water and its aquatic community composition, leading to harmful algal bloom formation. In our current study, we characterized the phytoplankton community across three eutrophic ponds to assess the phytoplankton dynamics during the vegetation season. We microscopically identified and quantified 29 cyanobacterial taxa comprising non-toxigenic and toxigenic species. Further, a detailed cyanopeptides (CNPs) profiling was performed using molecular networking analysis of liquid chromatography-tandem mass spectrometry (LC-MS/MS) data coupled with a dereplication strategy. This MS networking approach, coupled with dereplication, on the online global natural product social networking (GNPS) web platform led us to putatively identify forty CNPs: fourteen anabaenopeptins, ten microcystins, five cyanopeptolins, six microginins, two cyanobactins, a dipeptide radiosumin, a cyclooctapeptide planktocyclin, and epidolastatin 12. We applied the binary logistic regression to estimate the CNPs producers by correlating the GNPS data with the species abundance. The usage of the GNPS web platform proved a valuable approach for the rapid and simultaneous detection of a large number of peptides and rapid risk assessments for harmful blooms.
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Affiliation(s)
- Andreja Kust
- Laboratory of Algal Biotechnology-Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, 37901 Třeboň, Czech Republic; (A.K.); (J.M.); (P.H.)
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, 37005 České Budějovice, Czech Republic; (K.Ř.); (J.V.); (M.-C.C.)
| | - Klára Řeháková
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, 37005 České Budějovice, Czech Republic; (K.Ř.); (J.V.); (M.-C.C.)
- Institute of Botany of the Czech Academy of Sciences, 37901 Třeboň, Czech Republic
| | - Jaroslav Vrba
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, 37005 České Budějovice, Czech Republic; (K.Ř.); (J.V.); (M.-C.C.)
- Faculty of Science, University of South Bohemia, 37005 České Budějovice, Czech Republic
| | - Vincent Maicher
- Nicholas School of the Environment, Duke University, Durham, NC 27710, USA;
| | - Jan Mareš
- Laboratory of Algal Biotechnology-Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, 37901 Třeboň, Czech Republic; (A.K.); (J.M.); (P.H.)
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, 37005 České Budějovice, Czech Republic; (K.Ř.); (J.V.); (M.-C.C.)
- Faculty of Science, University of South Bohemia, 37005 České Budějovice, Czech Republic
| | - Pavel Hrouzek
- Laboratory of Algal Biotechnology-Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, 37901 Třeboň, Czech Republic; (A.K.); (J.M.); (P.H.)
- Faculty of Science, University of South Bohemia, 37005 České Budějovice, Czech Republic
| | - Maria-Cecilia Chiriac
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, 37005 České Budějovice, Czech Republic; (K.Ř.); (J.V.); (M.-C.C.)
| | - Zdeňka Benedová
- ENKI, o.p.s. Třeboň, Dukelská 145, 37901 Třeboň, Czech Republic; (Z.B.); (B.T.)
| | - Blanka Tesařová
- ENKI, o.p.s. Třeboň, Dukelská 145, 37901 Třeboň, Czech Republic; (Z.B.); (B.T.)
- Faculty of Agriculture, University of South Bohemia, Applied Ecology Laboratory, 37005 České Budějovice, Czech Republic
| | - Kumar Saurav
- Laboratory of Algal Biotechnology-Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, 37901 Třeboň, Czech Republic; (A.K.); (J.M.); (P.H.)
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Kublanovskaya A, Baulina O, Chekanov K, Lobakova E. The microalga Haematococcus lacustris (Chlorophyceae) forms natural biofilms in supralittoral White Sea coastal rock ponds. Planta 2020; 252:37. [PMID: 32778946 DOI: 10.1007/s00425-020-03438-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Accepted: 07/29/2020] [Indexed: 06/11/2023]
Abstract
Haematococcus lacustris inhabits supralittoral rock ponds and forms, under natural conditions, biofilms including layered cyanobacterial and fermentative microbial mats. Dry mats, formed under extremely stressful conditions, contained only haematocysts. Under favorable growth conditions, modeled for dry biofilms in vitro, microalgal free-living stages were detected. Haematococcus lacustris is the microalga known for its high potential to survive under a wide range of unfavorable conditions, particularly in the supralittoral temporal rock ponds of the White Sea. Previously, we described microbial communities containing H. lacustris in this region. In many cases, they were organized into systems exhibiting complex three-dimensional structure similar to that of natural biofilms. In this study, for the first time, we clarify structural description and provide microscopic evidence that these communities of H. lacustris and bacteria are assembled into the true biofilms. There are (1) simple single layer biofilms on the surface of rocks and macrophytic algae, (2) floccules (or flocs) not attached to a surface, (3) as well as stratified (layered) biofilms, wet, and dehydrated in nature. Being involved into primary organic production, H. lacustris and cyanobacteria are located exclusively in the upper layers of stratified biofilms, where they are capable to absorb sufficient for photosynthesis amount of light. The presence of acidic polysaccharides in the extracellular matrix revealed by specific staining with ruthenium red in the H. lacustris-containing microbial communities is a biochemical evidence of biofilm formation. Meanwhile, the presence of bacterial L-form is an ultrastructural confirmation of that fact. Under favorable conditions, modeled in vitro, H. lacustris from the dry microbial mats moves to the free-living states represented by vegetative palmelloid cells and motile zoospores. Owing to the fact that inside biofilms cells of microorganisms exist under stable conditions, we consider the biofilm formation as an additional mechanism that contributes to the survival of H. lacustris in the supralittoral zone of the White Sea.
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Affiliation(s)
- Anna Kublanovskaya
- Faculty of Biology, Lomonosov Moscow State University, 1-12 Leninskie Gory, Moscow, 119192, Russia.
| | - Olga Baulina
- Faculty of Biology, Lomonosov Moscow State University, 1-12 Leninskie Gory, Moscow, 119192, Russia
| | - Konstantin Chekanov
- Faculty of Biology, Lomonosov Moscow State University, 1-12 Leninskie Gory, Moscow, 119192, Russia
- Centre for Humanities Research and Technology, National Research Nuclear University MEPhI, 31 Kashirskoye highway, Moscow, 115522, Russia
| | - Elena Lobakova
- Faculty of Biology, Lomonosov Moscow State University, 1-12 Leninskie Gory, Moscow, 119192, Russia
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20
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Zhou R, Zeng S, Hou D, Liu J, Weng S, He J, Huang Z. Temporal variation of antibiotic resistance genes carried by culturable bacteria in the shrimp hepatopancreas and shrimp culture pond water. Ecotoxicol Environ Saf 2020; 199:110738. [PMID: 32447139 DOI: 10.1016/j.ecoenv.2020.110738] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Revised: 05/05/2020] [Accepted: 05/06/2020] [Indexed: 06/11/2023]
Abstract
The increasing prevalence of antibiotic resistance genes (ARGs) is a challenge to the health of humans, animals and the environments. Human activities and aquatic environments can increase ARGs. Few studies have focused on the temporal variation of aquatic bacteria with multiple ARGs in aquatic environments affected by human production activity. We studied culturable bacteria (CB) carrying ARGs, including sul1, sul2, floR, strA and gyrA in the shrimp hepatopancreas (HP) and in pond water during shrimp culture. The relative abundance of ARGs carried by CB in HP was higher than that in water (P < 0.05). However, CB carrying ARGs generally varied in random pattern. The correlation of sul2 abundance was significantly positive in HP, while that of strA abundance was significantly negative in water (P < 0.05) during shrimp culture. Among all of the CB, 33.59% carried multiple ARGs. Temporal distance-decay analysis indicated that CB carrying ARGs in water were more resistant to the effects of human activity. CB carrying ARGs varied temporally in HP and pond water during shrimp culture. These results demonstrate that multiple ARGs are carried by CB, and these varied with the phase of aquatic culture.
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Affiliation(s)
- Renjun Zhou
- State Key Laboratory of Biocontrol, Southern Marine Sciences and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China; Institute of Aquatic Economic Animals and Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China
| | - Shenzheng Zeng
- State Key Laboratory of Biocontrol, Southern Marine Sciences and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China; Institute of Aquatic Economic Animals and Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China
| | - Dongwei Hou
- State Key Laboratory of Biocontrol, Southern Marine Sciences and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China; Institute of Aquatic Economic Animals and Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China
| | - Jian Liu
- State Key Laboratory of Biocontrol, Southern Marine Sciences and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China; Institute of Aquatic Economic Animals and Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China
| | - Shaoping Weng
- State Key Laboratory of Biocontrol, Southern Marine Sciences and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China; Institute of Aquatic Economic Animals and Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China
| | - Jianguo He
- State Key Laboratory of Biocontrol, Southern Marine Sciences and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China; Institute of Aquatic Economic Animals and Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China.
| | - Zhijian Huang
- State Key Laboratory of Biocontrol, Southern Marine Sciences and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China; Institute of Aquatic Economic Animals and Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China.
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21
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Bwire G, Sack DA, Kagirita A, Obala T, Debes AK, Ram M, Komakech H, George CM, Orach CG. The quality of drinking and domestic water from the surface water sources (lakes, rivers, irrigation canals and ponds) and springs in cholera prone communities of Uganda: an analysis of vital physicochemical parameters. BMC Public Health 2020; 20:1128. [PMID: 32680495 PMCID: PMC7368733 DOI: 10.1186/s12889-020-09186-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Accepted: 07/01/2020] [Indexed: 02/06/2023] Open
Abstract
BACKGROUND Water is the most abundant resource on earth, however water scarcity affects more than 40% of people worldwide. Access to safe drinking water is a basic human right and is a United Nations Sustainable Development Goal (SDG) 6. Globally, waterborne diseases such as cholera are responsible for over two million deaths annually. Cholera is a major cause of ill-health in Africa and Uganda. This study aimed to determine the physicochemical characteristics of the surface and spring water in cholera endemic communities of Uganda in order to promote access to safe drinking water. METHODS A longitudinal study was carried out between February 2015 and January 2016 in cholera prone communities of Uganda. Surface and spring water used for domestic purposes including drinking from 27 sites (lakes, rivers, irrigation canal, springs and ponds) were tested monthly to determine the vital physicochemical parameters, namely pH, temperature, dissolved oxygen, conductivity and turbidity. RESULTS Overall, 318 water samples were tested. Twenty-six percent (36/135) of the tested samples had mean test results that were outside the World Health Organization (WHO) recommended drinking water range. All sites (100%, 27/27) had mean water turbidity values greater than the WHO drinking water recommended standards and the temperature of above 17 °C. In addition, 27% (3/11) of the lake sites and 2/5 of the ponds had pH and dissolved oxygen respectively outside the WHO recommended range of 6.5-8.5 for pH and less than 5 mg/L for dissolved oxygen. These physicochemical conditions were ideal for survival of Vibrio. cholerae. CONCLUSIONS This study showed that surface water and springs in the study area were unsafe for drinking and had favourable physicochemical parameters for propagation of waterborne diseases including cholera. Therefore, for Uganda to attain the SDG 6 targets and to eliminate cholera by 2030, more efforts are needed to promote access to safe drinking water. Also, since this study only established the vital water physicochemical parameters, further studies are recommended to determine the other water physicochemical parameters such as the nitrates and copper. Studies are also needed to establish the causal-effect relationship between V. cholerae and the physicochemical parameters.
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Affiliation(s)
- Godfrey Bwire
- Department of Community and Behavioral Sciences, Makerere University College of Health Sciences, School of Public Health, Kampala, Uganda.
| | - David A Sack
- Department of International Health, Johns Hopkins Bloomberg School of Public Health, Dove Project, Baltimore, MD, USA
| | - Atek Kagirita
- Uganda National Health Laboratory Services (UNHS/CPHL), Ministry of Health, Kampala, Uganda
| | - Tonny Obala
- Department of Quality Control, Uganda National Drug Authority, Kampala, Uganda
| | - Amanda K Debes
- Department of International Health, Johns Hopkins Bloomberg School of Public Health, Dove Project, Baltimore, MD, USA
| | - Malathi Ram
- Department of International Health, Johns Hopkins Bloomberg School of Public Health, Dove Project, Baltimore, MD, USA
| | - Henry Komakech
- Department of Community and Behavioral Sciences, Makerere University College of Health Sciences, School of Public Health, Kampala, Uganda
| | - Christine Marie George
- Department of International Health, Johns Hopkins Bloomberg School of Public Health, Dove Project, Baltimore, MD, USA
| | - Christopher Garimoi Orach
- Department of Community and Behavioral Sciences, Makerere University College of Health Sciences, School of Public Health, Kampala, Uganda
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22
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Aszalós JM, Szabó A, Megyes M, Anda D, Nagy B, Borsodi AK. Bacterial Diversity of a High-Altitude Permafrost Thaw Pond Located on Ojos del Salado (Dry Andes, Altiplano-Atacama Region). Astrobiology 2020; 20:754-765. [PMID: 32525738 DOI: 10.1089/ast.2018.2012] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Microbial ecology of permafrost, due to its ecological and astrobiological importance, has been in the focus of studies in past decades. Although permafrost is an ancient and stable environment, it is also subjected to current climate changes. Permafrost degradation often results in generation of thaw ponds, a phenomenon not only reported mainly from polar regions but also present in high-altitude permafrost environments. Our knowledge about microbial communities of thaw ponds in these unique, remote mountain habitats is sparse. This study presents the first culture collection and results of the next-generation DNA sequencing (NGS) analysis of bacterial communities inhabiting a high-altitude permafrost thaw pond. In February 2016, a permafrost thaw pond on the Ojos del Salado at 5900 m a.s.l. (meters above sea level) was sampled as part of the Hungarian Dry Andes Research Programme. A culture collection of 125 isolates was established, containing altogether 11 genera belonging to phyla Bacteroidetes, Actinobacteria, and Proteobacteria. Simplified bacterial communities with a high proportion of candidate and hitherto uncultured bacteria were revealed by Illumina MiSeq NGS. Water of the thaw pond was dominated by Bacteroidetes and Proteobacteria, while in the sediment of the lake and permafrost, members of Acidobacteria, Actinobacteria, Bacteroidetes, Patescibacteria, Proteobacteria, and Verrucomicrobia were abundant. This permafrost habitat can be interesting as a potential Mars analog.
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Affiliation(s)
| | - Attila Szabó
- Department of Microbiology, ELTE Eötvös Loránd University, Budapest, Hungary
| | - Melinda Megyes
- Department of Microbiology, ELTE Eötvös Loránd University, Budapest, Hungary
| | - Dóra Anda
- Department of Microbiology, ELTE Eötvös Loránd University, Budapest, Hungary
| | - Balázs Nagy
- Department of Physical Geography, ELTE Eötvös Loránd University, Budapest, Hungary
| | - Andrea K Borsodi
- Department of Microbiology, ELTE Eötvös Loránd University, Budapest, Hungary
- Danube Research Institute, Centre for Ecological Research, Budapest, Hungary
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23
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Ujszegi J, Vajna B, Móricz ÁM, Krüzselyi D, Korponai K, Krett G, Hettyey A. Relationships Between Chemical Defenses of Common Toad (Bufo bufo) Tadpoles and Bacterial Community Structure of their Natural Aquatic Habitat. J Chem Ecol 2020; 46:534-543. [PMID: 32468489 PMCID: PMC7332479 DOI: 10.1007/s10886-020-01184-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Revised: 03/10/2020] [Accepted: 05/15/2020] [Indexed: 12/02/2022]
Abstract
Many organisms synthesize secondary metabolites against natural enemies. However, to which environmental factors the production of these metabolites is adjusted to is poorly investigated in animals, especially so in vertebrates. Bufadienolides are steroidal compounds that are present in a wide range of plants and animals and, if present in large quantities, can provide protection against natural enemies, such as pathogens. In a correlative study involving 16 natural populations we investigated how variation in bufadienolide content of larval common toads (Bufo bufo) is associated with the bacterial community structure of their aquatic environment. We also evaluated pond size, macrovegetation cover, and the abundance of predators, conspecifics and other larval amphibians. We measured toxin content of tadpoles using HPLC-MS and determined the number of bufadienolide compounds (NBC) and the total quantity of bufadienolides (TBQ). AICc-based model selection revealed strong relationships of NBC and TBQ with bacterial community structure of the aquatic habitat as well as with the presence of conspecific tadpoles. The observed relationships may have arisen due to adaptation to local bacterial communities, phenotypic plasticity, differential biotransformation of toxin compounds by different bacterial communities, or a combination of these processes. Bacterial groups that contribute to among-population variation in toxin content remain to be pinpointed, but our study suggesting that toxin production may be influenced by the bacterial community of the environment represents an important step towards understanding the ecological and evolutionary processes leading to microbiota-mediated variation in skin toxin profiles of aquatic vertebrates.
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Affiliation(s)
- János Ujszegi
- Lendület Evolutionary Ecology Research Group, Plant Protection Institute, Centre for Agricultural Research, Herman Ottó út 15, Budapest, 1022, Hungary.
| | - Balázs Vajna
- Department of Microbiology, Eötvös Loránd University, Pázmány Péter sétány 1/C, Budapest, 1117, Hungary
| | - Ágnes M Móricz
- Department of Pathophysiology, Plant Protection Institute, Centre for Agricultural Research, Herman Ottó út 15, Budapest, 1022, Hungary
| | - Dániel Krüzselyi
- Department of Pathophysiology, Plant Protection Institute, Centre for Agricultural Research, Herman Ottó út 15, Budapest, 1022, Hungary
| | - Kristóf Korponai
- Department of Microbiology, Eötvös Loránd University, Pázmány Péter sétány 1/C, Budapest, 1117, Hungary
| | - Gergely Krett
- Department of Microbiology, Eötvös Loránd University, Pázmány Péter sétány 1/C, Budapest, 1117, Hungary
- Danube Research Institute, Centre for Ecological Research, Karolina út 29, Budapest, 1113, Hungary
| | - Attila Hettyey
- Lendület Evolutionary Ecology Research Group, Plant Protection Institute, Centre for Agricultural Research, Herman Ottó út 15, Budapest, 1022, Hungary
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Zhou M, Xu Y, Ouyang P, Ling J, Cai Q, Huang L, Zhou X, Zheng L. Evolution and distribution of resistance genes and bacterial community in water and biofilm of a simulated fish-duck integrated pond with stress. Chemosphere 2020; 245:125549. [PMID: 31869669 DOI: 10.1016/j.chemosphere.2019.125549] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Revised: 11/19/2019] [Accepted: 12/03/2019] [Indexed: 05/21/2023]
Abstract
Integrated fish-duck pond is a common circular farming model in South China, besides, it is also hot-spot for the co-selection of antibiotic resistance genes (ARGs). The aim of this study was to investigate the effects of duck manure, As and cefotaxime on the bacterial community, and the evolution and distribution of ARGs and metal(loid) resistance genes (MRGs) in water and biofilm. Five groups of fish tanks included a control and four test groups. The experimental period lasted for 100 days. Six ARGs (CIT, DHA, EBC, FOX, MOX, TEM), two MRGs (arsB, arsC), and two integron genes (intI1, intI2) were tracked and detected in water and biofilm. The results showed that duck manure brought ARGs and MRGs into fish tanks. Stress factors (cefotaxime, As) increased the relative abundance of resistance genes, and this was positively correlated with stress concentrations. The biofilm was visible significantly at the end of stage 3, and the total relative abundance of resistance genes in biofilm was higher than water from stage 5 onwards. Evolution of AmpC β-lactamase resistance genes was more obvious than MRGs, especially for MOX, which increased by 3 orders of magnitude. The abundance of Flavobacterium was higher in biofilm than in water. Moreover, correlation analysis showed that both arsB and MOX were significantly correlated with intI1 (p < 0.05), which suggested a potentially dissemination risk of resistance genes. This study provides a reference for health risk assessment in integrated aquaculture environment contaminated with duck manure, antibiotics and metalloids.
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Affiliation(s)
- Min Zhou
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou, 510006, China
| | - Yanbin Xu
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou, 510006, China.
| | - Pengqian Ouyang
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou, 510006, China
| | - Jiayin Ling
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou, 510006, China
| | - Qiujie Cai
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou, 510006, China
| | - Lu Huang
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou, 510006, China
| | - Xiao Zhou
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou, 510006, China
| | - Li Zheng
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou, 510006, China
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25
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Góralska K, Błaszkowska J, Dzikowiec M. The occurrence of potentially pathogenic filamentous fungi in recreational surface water as a public health risk. J Water Health 2020; 18:127-144. [PMID: 32300087 DOI: 10.2166/wh.2020.096] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Microfungi occurring in surface water may represent an important health risk. Recreational water reservoirs are a potential reservoir of pathogenic fungi. The aim of the study was to assess the diversity of mycobiota in selected artificial bathing reservoirs with regard to its biosafety for the human population. The studies were conducted during the summer of 2016 in three research seasons (June (I), July and August (II), and September (III)), taking into account the various periods of recreational activities. Filamentous fungi were isolated from water samples collected at five different ponds utilized for recreation. From 162 water samples, 149 fungal taxa of filamentous fungi were identified: 140 were classified to species level and only nine to genus level. Aspergillus fumigatus was the dominant species. The highest species richness (S) was noted in June, with 93 fungal taxa (Menhinick's index from 2.65 to 4.49). Additionally, in season I, the highest diversity of fungal species was revealed (Simpson's diversity index from 0.83 to 0.99). The average number of CFU/1 mL sample ranged between 0.4 and 4.6 depending on the time of sampling and ponds. Of all the isolated species, 128 were clinically relevant (11 from RG-2 and 117 from RG-1), highlighting the need to introduce seasonal mycological monitoring of such reservoirs.
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Affiliation(s)
- Katarzyna Góralska
- Department of Biology and Parasitology Medical University of Lodz, Pomorska 251, 92-213 Lodz, Poland E-mail:
| | - Joanna Błaszkowska
- Department of Biology and Parasitology Medical University of Lodz, Pomorska 251, 92-213 Lodz, Poland E-mail:
| | - Magdalena Dzikowiec
- Department of Biomedicine and Genetics Medical University of Lodz, Pomorska 251, 92-213 Lodz, Poland
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26
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Fan L, Hu G, Qiu L, Meng S, Wu W, Zheng Y, Song C, Li D, Chen J. Variations in bacterioplankton communities in aquaculture ponds and the influencing factors during the peak period of culture. Environ Pollut 2020; 258:113656. [PMID: 31796310 DOI: 10.1016/j.envpol.2019.113656] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2019] [Revised: 11/12/2019] [Accepted: 11/19/2019] [Indexed: 06/10/2023]
Abstract
An increase in nutrient input may disturb the bacterioplankton communities in freshwater aquaculture ponds during the peak period of culture. Water samples were collected from ponds of three cultivated species. After the samples were filtered and total DNA was extracted, Illumina high-throughput sequencing was used to profile the spatiotemporal distributions in bacterioplankton communities, the belt diversity, and the influencing factors during this period of time. The results showed that Proteobacteria, Cyanobacteria, Bacteroidetes, and Actinobacteria were the dominant phyla. Biological differences in cultivated species were the main influencing factors that shaped bacterioplankton communities. Monthly variations and thermal stratification provided little and no contribution to bacterioplankton communities, respectively. CODmn, Chla, and TN were the most appropriate parameters to describe the environmental interpretation of bacterial ordinations, and CODmn was the predominant factor. In addition, the higher similarity between CODmn and Chla, shown by clustering analysis, indicated that the algae-bacteria symbiotic system may have an important role in material circulation in freshwater aquaculture pond water during the peak period of culture. The present study has helped to elucidate the biological characteristics of aquaculture tail water, and enriched the basic data provided by bacterioplankton studies.
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Affiliation(s)
- Limin Fan
- Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Scientific Observing and Experimental Station of Fishery Resources and Environment in the Lower Reaches of the Yangtze River, Wuxi, 214081, Jiangsu Province, China
| | - Gengdong Hu
- Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Scientific Observing and Experimental Station of Fishery Resources and Environment in the Lower Reaches of the Yangtze River, Wuxi, 214081, Jiangsu Province, China
| | - Liping Qiu
- Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Scientific Observing and Experimental Station of Fishery Resources and Environment in the Lower Reaches of the Yangtze River, Wuxi, 214081, Jiangsu Province, China
| | - Shunlong Meng
- Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Scientific Observing and Experimental Station of Fishery Resources and Environment in the Lower Reaches of the Yangtze River, Wuxi, 214081, Jiangsu Province, China
| | - Wei Wu
- Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Scientific Observing and Experimental Station of Fishery Resources and Environment in the Lower Reaches of the Yangtze River, Wuxi, 214081, Jiangsu Province, China
| | - Yao Zheng
- Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Scientific Observing and Experimental Station of Fishery Resources and Environment in the Lower Reaches of the Yangtze River, Wuxi, 214081, Jiangsu Province, China
| | - Chao Song
- Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Scientific Observing and Experimental Station of Fishery Resources and Environment in the Lower Reaches of the Yangtze River, Wuxi, 214081, Jiangsu Province, China
| | - Dandan Li
- Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Scientific Observing and Experimental Station of Fishery Resources and Environment in the Lower Reaches of the Yangtze River, Wuxi, 214081, Jiangsu Province, China
| | - Jiazhang Chen
- Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Scientific Observing and Experimental Station of Fishery Resources and Environment in the Lower Reaches of the Yangtze River, Wuxi, 214081, Jiangsu Province, China.
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Casanovas-Massana A, Hamond C, Santos LA, de Oliveira D, Hacker KP, Balassiano I, Costa F, Medeiros MA, Reis MG, Ko AI, Wunder EA. Leptospira yasudae sp. nov. and Leptospira stimsonii sp. nov., two new species of the pathogenic group isolated from environmental sources. Int J Syst Evol Microbiol 2020; 70:1450-1456. [PMID: 31184568 PMCID: PMC10197099 DOI: 10.1099/ijsem.0.003480] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2019] [Accepted: 05/13/2019] [Indexed: 09/08/2023] Open
Abstract
Four spirochetes (F1T, B21, YaleT and AMB6-RJ) were isolated from environmental sources: F1T and B21 from soils of an urban slum community in Salvador (Brazil), YaleT from river water in New Haven, Connecticut (USA) and AMB6-RJ from a pond in a horse farm in Rio de Janeiro (Brazil). Isolates were helix-shaped, aerobic, highly motile and non-virulent in a hamster model of infection. Draft genomes of the strains were obtained and analysed to determine the relatedness to other species of the genus Leptospira. The analysis of 498 core genes showed that strains F1T/B21 and YaleT/AMB6-RJ formed two distinct phylogenetic clades within the 'Pathogens' group (group I). The average nucleotide identity (ANI) values of strains F1T/B21 and YaleT/AMB6-RJ to other previously described Leptospira species were below <84 % and <82 %, respectively, which confirmed that these isolates should be classified as representatives of two novel species. Therefore, we propose Leptospirayasudae sp. nov. and Leptospirastimsonii sp. nov. as new species in the genus Leptospira. The type strains are F1T (=ATCC-TSD-163=KIT0259=CLEP00287) and YaleT (=ATCC-TDS-162=KIT0258=CLEP00288), respectively.
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Affiliation(s)
- Arnau Casanovas-Massana
- Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, CT, USA
| | - Camila Hamond
- Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, CT, USA
- Present address: Instituto Nacional de Investigación Agropecuaria, Estación Experimental La Estanzuela, Colonia, Uruguay and Unidad Mixta Pasteur + INIA (UMPI), Institut Pasteur de Montevideo/Instituto Nacional de Investigación Agropecuaria, Montevideo, Uruguay
| | - Luciane A. Santos
- Gonçalo Moniz Institute, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, Brazil
| | - Daiana de Oliveira
- Gonçalo Moniz Institute, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, Brazil
| | - Kathryn P. Hacker
- Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, CT, USA
- Gonçalo Moniz Institute, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, Brazil
| | - Ilana Balassiano
- Centro de Referência Nacional para Leptospirose/Coleção de Leptospira, Laboratório de Zoonoses Bacterianas, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil
| | - Federico Costa
- Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, CT, USA
- Gonçalo Moniz Institute, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, Brazil
- Instituto da Saúde Coletiva, Universidade Federal da Bahia, Salvador, Bahia, Brazil
| | - Marco A. Medeiros
- Bio-Manguinhos, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Rio de Janeiro, Brazil
| | - Mitermayer G. Reis
- Gonçalo Moniz Institute, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, Brazil
| | - Albert I. Ko
- Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, CT, USA
- Gonçalo Moniz Institute, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, Brazil
| | - Elsio A. Wunder
- Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, CT, USA
- Gonçalo Moniz Institute, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, Brazil
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Zdanowicz M, Mudryk ZJ, Perliński P. Abundance and antibiotic resistance of Aeromonas isolated from the water of three carp ponds. Vet Res Commun 2020; 44:9-18. [PMID: 31965460 PMCID: PMC7040064 DOI: 10.1007/s11259-020-09768-x] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2019] [Accepted: 01/09/2020] [Indexed: 12/19/2022]
Abstract
Abundance and antibiotic resistance of bacteria of the genus Aeromonas isolated from the water of three carp ponds were studied. The number of those bacteria differed between the studied ponds, sites and season. The results of the present study showed that planktonic Aeromonas inhabiting those ponds strongly differed in the resistance level to tested antibiotics. These microorganisms were the most resistant to amoxicillin, ampicillin, clindamycin and penicillin. However, all isolates Aeromonas were susceptible to gentamycin and streptomycin. Majority of bacterial strains were characterized by resistance to 4-6 of the 12 antibiotics tested. Bacterial resistance to antibiotics depended on their chemical structure. Aeromonas strains isolated from the studied ponds were the most resistant to β-lactam and lincosamides antibiotics, while the most susceptible to aminoglycosides, chloramphenicols and fluoroquinolones.
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Affiliation(s)
- Marta Zdanowicz
- Department of Experimental Biology, Institute of Biology and Earth Science, Pomeranian University in Słupsk, Arciszewskiego 22b, 76-200, Słupsk, Poland
| | - Zbigniew Jan Mudryk
- Department of Experimental Biology, Institute of Biology and Earth Science, Pomeranian University in Słupsk, Arciszewskiego 22b, 76-200, Słupsk, Poland
| | - Piotr Perliński
- Department of Experimental Biology, Institute of Biology and Earth Science, Pomeranian University in Słupsk, Arciszewskiego 22b, 76-200, Słupsk, Poland.
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29
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Kushwaha B, Jadhav I, Jadhav K. Halomonas sambharensis sp. nov., a Moderately Halophilic Bacterium Isolated from the Saltern Crystallizer Ponds of the Sambhar Salt Lake in India. Curr Microbiol 2020; 77:1125-1134. [PMID: 32002626 DOI: 10.1007/s00284-020-01892-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2019] [Accepted: 01/18/2020] [Indexed: 01/26/2023]
Abstract
Two moderately halophilic strains SBS 10T and SSO 06 were isolated from the saltern crystallizer ponds of the hypersaline Sambhar Salt Lake in India. Strains were aerobic, Gram-stain-negative, and rod shaped. Phylogenetic analysis based on the 16S rRNA gene sequences indicated that two strains belong to the genus Halomonas in the Gammaproteobacteria, with highest 16S rRNA gene sequence similarities with Halomonas gudaonensis LMG 23610T (98.2% similarity) and Halomonas campaniensis 5AGT (99.0% similarity). Strains grew optimally at 37 °C, pH 7.5-8.0 in the presence of 5-8% (w/v) NaCl. The major fatty acids of the strain SBS 10T were C18:1ω7c (54.37%), C16:0 (25.69%), C16:1 × 7c/C16:1 × 6c (13.28%), and C12:0 (1.21%). The G+C content was 63.6 mol % (Tm). Phenotypic features, fatty acids profile, and DNA G+C content supported placement of the strain SBS 10T in the genus Halomonas having distinct characteristics with related strains. Analysis of the housekeeping genes: gryB and rpoD and in silico DNA-DNA hybridization between the strain SBS 10T and its type strain Halomonas gudaonensis (LMG 23610T) further revealed the strain SBS 10T to be a distinct species. On the basis of the phenotypic, chemotaxonomic and phylogenetic analysis, the strain SBS 10T is considered to represent a novel species for which the name Halomonas sambharensis is proposed. The type strain is SBS 10T (= MTCC 12313T = LMG 30344T).
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Affiliation(s)
| | - Indrani Jadhav
- School of Life Sciences, Jaipur National University, Jaipur, India
| | - Kapilesh Jadhav
- School of Engineering and Technology, Jaipur National University, Jaipur, India.
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30
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Raeisossadati M, Moheimani NR, Parlevliet D. Red and blue luminescent solar concentrators for increasing Arthrospira platensis biomass and phycocyanin productivity in outdoor raceway ponds. Bioresour Technol 2019; 291:121801. [PMID: 31326685 DOI: 10.1016/j.biortech.2019.121801] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2019] [Revised: 07/10/2019] [Accepted: 07/11/2019] [Indexed: 06/10/2023]
Abstract
Achieving high biomass productivity is critical for establishing a successful large-scale algal facility. Microalgae cultures in raceway ponds are normally light limited. To achieve high biomass productivity, there is a need to develop a system to deliver light into the depth of microalgal cultures in raceway ponds. We investigated red and blue luminescent solar concentrators (LSCs) in outdoor raceway ponds to downgrade the sunlight, re-emit and, deliver it into the depth of Arthrospira platensis culture operated at 21 cm depth. When red LSCs were used, the biomass productivity (12.2 g m-2 d-1) and phycocyanin productivity (8.5 mg L-1 d-1) of A. platensis increased 26% and 44%, respectively. However, using blue LSCs resulted in no significant increase in A. platensis biomass productivity. Therefore, for generating same phycocyanin productivity using red LSCs, 44% less cultivation area would be required. This can lead to a significant reduction in the cost of phycocyanin production.
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Affiliation(s)
| | - Navid Reza Moheimani
- Algae R&D Centre, Murdoch University, Murdoch, Western Australia 6150, Australia; Centre for Sustainable Aquatic Ecosystems, Harry Butler Institute, Murdoch University, 6150, Australia.
| | - David Parlevliet
- School of Engineering and Information Technology, Physics and Energy, Murdoch University, Murdoch, Western Australia 6150, Australia
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31
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Colangelo-Lillis J, Pelikan C, Herbold CW, Altshuler I, Loy A, Whyte LG, Wing BA. Diversity decoupled from sulfur isotope fractionation in a sulfate-reducing microbial community. Geobiology 2019; 17:660-675. [PMID: 31328364 DOI: 10.1111/gbi.12356] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Accepted: 06/25/2019] [Indexed: 06/10/2023]
Abstract
The extent of fractionation of sulfur isotopes by sulfate-reducing microbes is dictated by genomic and environmental factors. A greater understanding of species-specific fractionations may better inform interpretation of sulfur isotopes preserved in the rock record. To examine whether gene diversity influences net isotopic fractionation in situ, we assessed environmental chemistry, sulfate reduction rates, diversity of putative sulfur-metabolizing organisms by 16S rRNA and dissimilatory sulfite reductase (dsrB) gene amplicon sequencing, and net fractionation of sulfur isotopes along a sediment transect of a hypersaline Arctic spring. In situ sulfate reduction rates yielded minimum cell-specific sulfate reduction rates < 0.3 × 10-15 moles cell-1 day-1 . Neither 16S rRNA nor dsrB diversity indices correlated with relatively constant (38‰-45‰) net isotope fractionation (ε34 Ssulfide-sulfate ). Measured ε34 S values could be reproduced in a mechanistic fractionation model if 1%-2% of the microbial community (10%-60% of Deltaproteobacteria) were engaged in sulfate respiration, indicating heterogeneous respiratory activity within sulfate-reducing populations. This model indicated enzymatic kinetic diversity of Apr was more likely to correlate with sulfur fractionation than DsrB. We propose that, above a threshold Shannon diversity value of 0.8 for dsrB, the influence of the specific composition of the microbial community responsible for generating an isotope signal is overprinted by the control exerted by environmental variables on microbial physiology.
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Affiliation(s)
- Jesse Colangelo-Lillis
- Department of Geological Sciences, University of Colorado, Boulder, CO, USA
- Institute for Arctic and Alpine Research, University of Colorado, Boulder, CO, USA
- Department of Earth and Planetary Science, McGill University, Montreal, Quebec, Canada
- McGill Space Institute, McGill University, Montreal, Quebec, Canada
| | - Claus Pelikan
- Division of Microbial Ecology, Department of Microbiology and Ecosystem Science, Research Network Chemistry meets Microbiology, University of Vienna, Vienna, Austria
| | - Craig W Herbold
- Division of Microbial Ecology, Department of Microbiology and Ecosystem Science, Research Network Chemistry meets Microbiology, University of Vienna, Vienna, Austria
| | - Ianina Altshuler
- McGill Space Institute, McGill University, Montreal, Quebec, Canada
- Department of Natural Resource Science, McGill University, Montreal, Quebec, Canada
| | - Alexander Loy
- Division of Microbial Ecology, Department of Microbiology and Ecosystem Science, Research Network Chemistry meets Microbiology, University of Vienna, Vienna, Austria
- Austrian Polar Research Institute, Vienna, Austria
| | - Lyle G Whyte
- McGill Space Institute, McGill University, Montreal, Quebec, Canada
- Department of Natural Resource Science, McGill University, Montreal, Quebec, Canada
| | - Boswell A Wing
- Department of Geological Sciences, University of Colorado, Boulder, CO, USA
- Department of Earth and Planetary Science, McGill University, Montreal, Quebec, Canada
- McGill Space Institute, McGill University, Montreal, Quebec, Canada
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32
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Lei KH, Lai HT. Effects of sunlight, microbial activity, and temperature on the declines of antibiotic lincomycin in freshwater and saline aquaculture pond waters and sediments. Environ Sci Pollut Res Int 2019; 26:33988-33994. [PMID: 30145759 DOI: 10.1007/s11356-018-3006-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Accepted: 08/16/2018] [Indexed: 06/08/2023]
Abstract
The residues of lincomycin (LIN), an antibiotic administered to aquatic animals, are often detected in aquatic environments. This study investigated effects of three environmental factors, sunlight, microbial activity, and temperature, on declines of spiked LIN in waters and sediment slurry samples collected from freshwater tilapia (Oreochromis mossambicus) and marine shrimp (Litopenaeus vannamei) culture ponds. The results showed that sunlight, temperature, and microbial activity all accelerated LIN transformation in the water and slurry samples. In matrixes of all water and slurry samples, LIN transformation was significantly faster under light conditions [half-life (t1/2) = 24-53 days] than under dark conditions (t1/2 = 154-2897 days). Microbial activity also accelerated LIN transformation; the t1/2 of LIN was shorter after nonsterile treatment (t1/2 = 12-809 days) than after sterile treatment (t1/2 = 154-2897 days). Moreover, LIN transformation was faster at 28 °C (t1/2 = 18-38 days) than at 20 and 12 °C (t1/2 = 34 and 462 days, respectively) in both slurry samples. The results revealed that LIN transformation in aquaculture pond water and sediment was either slow or stagnant. Sunlight, microbial activity, and temperature can accelerate LIN transformation to reduce LIN residue levels.
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Affiliation(s)
- Ka-Hou Lei
- Department of Aquatic Biosciences, National Chiayi University, 300 University Rd, Chiayi, 60004, Taiwan
| | - Hong-Thih Lai
- Department of Aquatic Biosciences, National Chiayi University, 300 University Rd, Chiayi, 60004, Taiwan.
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33
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Dickinson AW, Power A, Hansen MG, Brandt KK, Piliposian G, Appleby P, O'Neill PA, Jones RT, Sierocinski P, Koskella B, Vos M. Heavy metal pollution and co-selection for antibiotic resistance: A microbial palaeontology approach. Environ Int 2019; 132:105117. [PMID: 31473413 DOI: 10.1016/j.envint.2019.105117] [Citation(s) in RCA: 111] [Impact Index Per Article: 22.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Revised: 08/19/2019] [Accepted: 08/21/2019] [Indexed: 06/10/2023]
Abstract
Frequent and persistent heavy metal pollution has profound effects on the composition and activity of microbial communities. Heavy metals select for metal resistance but can also co-select for resistance to antibiotics, which is a global health concern. We here document metal concentration, metal resistance and antibiotic resistance along a sediment archive from a pond in the North West of the United Kingdom covering over a century of anthropogenic pollution. We specifically focus on zinc, as it is a ubiquitous and toxic metal contaminant known to co-select for antibiotic resistance, to assess the impact of temporal variation in heavy metal pollution on microbial community diversity and to quantify the selection effects of differential heavy metal exposure on antibiotic resistance. Zinc concentration and bioavailability was found to vary over the core, likely reflecting increased industrialisation around the middle of the 20th century. Zinc concentration had a significant effect on bacterial community composition, as revealed by a positive correlation between the level of zinc tolerance in culturable bacteria and zinc concentration. The proportion of zinc resistant isolates was also positively correlated with resistance to three clinically relevant antibiotics (oxacillin, cefotaxime and trimethoprim). The abundance of the class 1 integron-integrase gene, intI1, marker for anthropogenic pollutants correlated with the prevalence of zinc- and cefotaxime resistance but not with oxacillin and trimethoprim resistance. Our microbial palaeontology approach reveals that metal-contaminated sediments from depths that pre-date the use of antibiotics were enriched in antibiotic resistant bacteria, demonstrating the pervasive effects of metal-antibiotic co-selection in the environment.
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Affiliation(s)
- A W Dickinson
- College of Life and Environmental Science, University of Exeter, Penryn, UK; UK Centre for Astrobiology, School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK.
| | - A Power
- Biocatalysis Centre, University of Exeter, Exeter, UK
| | - M G Hansen
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg, Denmark
| | - K K Brandt
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg, Denmark
| | - G Piliposian
- Department of Mathematical Sciences, University of Liverpool, Liverpool, UK
| | - P Appleby
- Department of Mathematical Sciences, University of Liverpool, Liverpool, UK
| | - P A O'Neill
- Welcome Trust Biomedical Informatics Hub, Geoffrey Pope Building, University of Exeter, Exeter, UK
| | - R T Jones
- School of Geography, College of Life and Environmental Sciences, University of Exeter, Amory Building, Rennes Drive, Exeter, UK
| | - P Sierocinski
- College of Life and Environmental Science, University of Exeter, Penryn, UK
| | - B Koskella
- Department of Integrative Biology, University of California, Berkeley, Berkeley, CA, USA
| | - M Vos
- European Centre for Environment and Human Health, College of Medicine and Health, University of Exeter, Penryn, UK
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34
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Gao T, Cui B, Kong X, Bai Z, Zhuang X, Qian Z. Investigation of bacterial diversity and pathogen abundances in gibel carp (Carassius auratus gibelio) ponds during a cyprinid herpesvirus 2 outbreak. Microbiologyopen 2019; 8:e907. [PMID: 31432609 PMCID: PMC6813457 DOI: 10.1002/mbo3.907] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2019] [Revised: 06/12/2019] [Accepted: 06/28/2019] [Indexed: 12/28/2022] Open
Abstract
Cyprinid herpesvirus 2 (CyHV-2) infection is detrimental to gibel carp health and may result in severe economic loss in freshwater aquaculture. However, information regarding the interaction of this pathogen with the aquatic environment is scarce. In this study, quantitative polymerase chain reaction (qPCR) and high-throughput sequencing were used to determine the abundances of pathogens and bacterial community compositions in two aquaculture ponds in Jiangsu Province, China. The results indicate that the concentrations of six selected pathogens were higher in the water than in the sediment and that these concentrations peaked during disease outbreak. In total, 8,326 and 18,244 operational taxonomic units were identified from water and sediment samples, respectively. The dominant phyla were Proteobacteria, Actinobacteria, Cyanobacteria, Bacteroidetes, and Chlorobi in water samples and Proteobacteria, Firmicutes, Actinobacteria, Chloroflexi, and Bacteroidetes in sediment samples. Bacterial communities were similar at the phylum level in different ponds, although significant differences were observed at the genus level. In addition, bacterial diversity was associated with environmental factors (temperature, chemical oxygen demand, NO2- -N, NO3- -N, and NH4+ -N) in the pond where the outbreak occurred. Additionally, CyHV-2 abundance was positively correlated with dissolved oxygen levels and Aeromonas spp. abundance in pond water (p < .01). This study provides comprehensive insight into the mechanisms of interaction between potential pathogens and the freshwater environment of aquaculture ponds during CyHV-2 disease outbreaks. Furthermore, the results from this study can contribute to improvement of the aquatic environment and establishment of disease prevention and control measures.
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Affiliation(s)
- Tianming Gao
- College of Resources and EnvironmentUniversity of Chinese Academy of SciencesBeijingChina
- Research Center for Eco‐Environmental SciencesChinese Academy of SciencesBeijingChina
| | - Bingjian Cui
- College of Resources and EnvironmentUniversity of Chinese Academy of SciencesBeijingChina
- Farmland Irrigation Research InstituteChinese Academy of Agricultural SciencesXinxiangChina
| | - Xiao Kong
- College of Resources and EnvironmentUniversity of Chinese Academy of SciencesBeijingChina
- Research Center for Eco‐Environmental SciencesChinese Academy of SciencesBeijingChina
| | - Zhihui Bai
- College of Resources and EnvironmentUniversity of Chinese Academy of SciencesBeijingChina
- Research Center for Eco‐Environmental SciencesChinese Academy of SciencesBeijingChina
| | - Xuliang Zhuang
- College of Resources and EnvironmentUniversity of Chinese Academy of SciencesBeijingChina
- Research Center for Eco‐Environmental SciencesChinese Academy of SciencesBeijingChina
| | - Zhi Qian
- College of Resources and EnvironmentUniversity of Chinese Academy of SciencesBeijingChina
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35
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Solimeno A, Gómez-Serrano C, Acién FG. BIO_ALGAE 2: improved model of microalgae and bacteria consortia for wastewater treatment. Environ Sci Pollut Res Int 2019; 26:25855-25868. [PMID: 31273656 DOI: 10.1007/s11356-019-05824-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Accepted: 06/24/2019] [Indexed: 06/09/2023]
Abstract
A new set up of the integral mechanistic BIO_ALGAE model that describes the complex interactions in mixed algal-bacterial systems was developed to overcome some restrictions of the model. BIO_ALGAE 2 includes new sub-models that take into account the variation of microalgae and bacteria performance as a function of culture conditions prevailing in microalgae cultures (pH, temperature, dissolved oxygen) over daily and seasonal cycles and the implementation of on-demand dioxide carbon injection for pH control. Moreover, another aim of this work was to study a correlation between the mass transfer coefficient and the hydrodynamics of reactor. The model was calibrated using real data from a laboratory reactor fed with real wastewater. Moreover, the model was used to simulate daily variations of different components in the pond (dissolved oxygen, pH, and CO2 injection) and to predict microalgae (XALG) and bacteria (XH) proportions and to estimate daily biomass production (Cb). The effect of CO2 injection and the influence of wastewater composition on treatment performance were investigated through practical study cases. XALG decreased by 38%, and XH increased by 35% with respect to the system under pH control while microalgae and bacteria proportions are completely different as a function of influent wastewater composition. Model simulations have indicated that Cb production (~ 100 gTSS m-3 day-1 for manure and centrate) resulted lower than Cb production obtained using primary influent wastewater (155 gTSS m-3 day-1).
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Affiliation(s)
- Alessandro Solimeno
- Department of Chemical Engineering, University of Almería, Ctra. Sacramento, s/n, La Cañada de San Urbano, 04120, Almeria, Spain.
| | - Cintia Gómez-Serrano
- Department of Chemical Engineering, University of Almería, Ctra. Sacramento, s/n, La Cañada de San Urbano, 04120, Almeria, Spain
| | - Francisco Gabriel Acién
- Department of Chemical Engineering, University of Almería, Ctra. Sacramento, s/n, La Cañada de San Urbano, 04120, Almeria, Spain
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36
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Chang BV, Chang YT, Chao WL, Yeh SL, Kuo DL, Yang CW. Effects of sulfamethoxazole and sulfamethoxazole-degrading bacteria on water quality and microbial communities in milkfish ponds. Environ Pollut 2019; 252:305-316. [PMID: 31158659 DOI: 10.1016/j.envpol.2019.05.136] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2019] [Revised: 05/24/2019] [Accepted: 05/26/2019] [Indexed: 06/09/2023]
Abstract
Intensive farming practices are typically used for aquaculture. To prevent disease outbreaks, antibiotics are often used to reduce pathogenic bacteria in aquaculture animals. However, the effects of antibiotics on water quality and microbial communities in euryhaline fish culture ponds are largely unknown. The aim of this study was to investigate the interactions between sulfamethoxazole (SMX), water quality and microbial communities in milkfish (Chanos chanos) culture ponds. The results of small-scale milkfish pond experiments indicated that the addition of SMX decreased the abundance of ammonia-oxidizing bacteria (AOB), nitrite-oxidizing bacteria (NOB) and photosynthetic bacteria. Consequently, the levels of ammonia and total phosphorus in the fish pond water increased, causing algal and cyanobacterial blooms to occur. In contrast, the addition of the SMX-degrading bacterial strains A12 and L effectively degraded SMX and reduced the levels of ammonia and total phosphorus in fish pond water. Furthermore, the abundances of AOB, NOB and photosynthetic bacteria were restored, and algal and cyanobacterial blooms were inhibited. This study demonstrate the influences of SMX on water quality and microbial community composition in milkfish culture ponds. Moreover, the use of the bacterial strains A12 and L as dual function (bioaugmentation and water quality maintenance) beneficial bacteria was shown to provide an effective approach for the bioremediation of SMX-contaminated euryhaline milkfish culture ponds.
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Affiliation(s)
- Bea-Ven Chang
- Department of Microbiology, Soochow University, Taipei, Taiwan
| | - Yi-Tang Chang
- Department of Microbiology, Soochow University, Taipei, Taiwan
| | - Wei-Liang Chao
- Department of Microbiology, Soochow University, Taipei, Taiwan
| | - Shinn-Lih Yeh
- Mariculture Research Center, Council of Agriculture, Tainan City, Taiwan
| | - Dong-Lin Kuo
- Department of Microbiology, Soochow University, Taipei, Taiwan
| | - Chu-Wen Yang
- Department of Microbiology, Soochow University, Taipei, Taiwan.
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37
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Liu J, Yao J, Sunahara G, Wang F, Li Z, Duran R. Nonferrous metal (loid) s mediate bacterial diversity in an abandoned mine tailing impoundment. Environ Sci Pollut Res Int 2019; 26:24806-24818. [PMID: 31240654 DOI: 10.1007/s11356-019-05092-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2018] [Accepted: 04/04/2019] [Indexed: 06/09/2023]
Abstract
Migration and transformation of toxic metal (loid) s in tailing sites inevitably lead to ecological disturbances and serious threats to the surroundings. However, the horizontal and vertical distribution of bacterial diversity has not been determined in nonferrous metal (loid) tailing ponds, especially in Guangxi China, where the world's largest and potentially most toxic sources of metal (loid) s are located. Distribution of bacterial communities was stable at horizontal levels. At the surface (0-10 cm), the stability was most attributed to Bacillus and Enterococcus, while bacterial communities at the subsurface (50 cm) were mainly contributed by Nitrospira and Sulfuricella. Variable vertical distribution of bacterial communities has led to the occurrence of specific genera and specific predicted functions (such as transcription regulation factors). Sulfurifustis (a S-oxidizing and inorganic carbon fixing bacteria) genera were specific at the surface, whereas Streptococcus-related genera were found at the surface and subsurface, but were more abundant in the latter depth. Physical-chemical parameters, such as pH, TN, and metal (loid) (As, Cd, Pb, Cu, and Zn) concentrations were the main drivers of bacterial community abundance, diversity, composition, and metabolic functions. These results increase our understanding of the physical-chemical effects on the spatial distribution of bacterial communities and provide useful insight for the bioremediation and site management of nonferrous metal (loid) tailings.
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Affiliation(s)
- Jianli Liu
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Haidian District, Beijing, 100083, China
| | - Jun Yao
- School of Water Resource and Environment Engineering, Research Center of Environmental Sciences and Engineering, China University of Geosciences (Beijing), 29 Xueyuan Road, Haidian District, Beijing, 100083, China.
| | - Geoffrey Sunahara
- School of Water Resource and Environment Engineering, Research Center of Environmental Sciences and Engineering, China University of Geosciences (Beijing), 29 Xueyuan Road, Haidian District, Beijing, 100083, China
- Department of Natural Resource Sciences, McGill University, Montreal, H9X3V9, Quebec, Canada
| | - Fei Wang
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Haidian District, Beijing, 100083, China
| | - Zifu Li
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Haidian District, Beijing, 100083, China.
| | - Robert Duran
- School of Water Resource and Environment Engineering, Research Center of Environmental Sciences and Engineering, China University of Geosciences (Beijing), 29 Xueyuan Road, Haidian District, Beijing, 100083, China
- Equipe Environnement et Microbiologie, MELODY group, Université de Pau et des Pays de l'Adour, IPREM UMR CNRS 5254, BP 1155, 64013, Pau, Cedex, France
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Mania I, Gorra R, Colombo N, Freppaz M, Martin M, Anesio AM. Prokaryotic Diversity and Distribution in Different Habitats of an Alpine Rock Glacier-Pond System. Microb Ecol 2019; 78:70-84. [PMID: 30317429 DOI: 10.1007/s00248-018-1272-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Accepted: 10/04/2018] [Indexed: 06/08/2023]
Abstract
Rock glaciers (RG) are assumed to influence the biogeochemistry of downstream ecosystems because of the high ratio of rock:water in those systems, but no studies have considered the effects of a RG inflow on the microbial ecology of sediments in a downstream pond. An alpine RG-pond system, located in the NW Italian Alps has been chosen as a model, and Bacteria and Archaea 16S rRNA genes abundance, distribution and diversity have been assessed by qPCR and Illumina sequencing, coupled with geochemical analyses on sediments collected along a distance gradient from the RG inflow. RG surface material and neighbouring soil have been included in the analysis to better elucidate relationships among different habitats.Our results showed that different habitats harboured different, well-separated microbial assemblages. Across the pond, the main variations in community composition (e.g. Thaumarchaeota and Cyanobacteria relative abundance) and porewater geochemistry (pH, DOC, TDN and NH4+) were not directly linked to RG proximity, but to differences in water depth. Some microbial markers potentially linked to the presence of meltwater inputs from the RG have been recognised, although the RG seems to have a greater influence on the pond microbial communities due to its contribution in terms of sedimentary material.
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Affiliation(s)
- I Mania
- Department of Agriculture, Forest and Food Sciences (DISAFA), University of Turin, Largo Braccini 2, 10095, Grugliasco, TO, Italy.
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, Bristol, BS8 1SS, UK.
| | - R Gorra
- Department of Agriculture, Forest and Food Sciences (DISAFA), University of Turin, Largo Braccini 2, 10095, Grugliasco, TO, Italy
| | - N Colombo
- Department of Earth Sciences, University of Turin, Via Valperga Caluso 35, 10125, Torino, Italy
- Department of Geography and Environmental Studies, Carleton University, 1125 Colonel By Drive, Ottawa, ON, K1S 5B6, Canada
| | - M Freppaz
- Department of Agriculture, Forest and Food Sciences (DISAFA), University of Turin, Largo Braccini 2, 10095, Grugliasco, TO, Italy
| | - M Martin
- Department of Agriculture, Forest and Food Sciences (DISAFA), University of Turin, Largo Braccini 2, 10095, Grugliasco, TO, Italy
| | - A M Anesio
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, Bristol, BS8 1SS, UK
- Department of Environmental Sciences, Aarhus University, 4000, Roskilde, Denmark
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Stocker MD, Pachepsky YA, Hill RL, Sellner KG, Macarisin D, Staver KW. Intraseasonal variation of E. coli and environmental covariates in two irrigation ponds in Maryland, USA. Sci Total Environ 2019; 670:732-740. [PMID: 30909049 DOI: 10.1016/j.scitotenv.2019.03.121] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2018] [Revised: 03/08/2019] [Accepted: 03/08/2019] [Indexed: 06/09/2023]
Abstract
The microbial quality of irrigation water is typically assessed by measuring the concentrations of E. coli in irrigation water reservoirs that are variable in space and time. E. coli concentrations are affected by water quality parameters that co-vary with E. coli concentrations and may be easily measured with currently available sensors. The objective of this work was to identify the most influential environmental covariates affecting E. coli concentrations during a three-month biweekly monitoring period within two irrigation ponds in Maryland during the summer of 2017. E. coli levels as well as sensor-based water quality parameters including turbidity, pH, dissolved oxygen, dissolved fluorescent organic matter, conductivity, and chlorophyll were measured at 23 and 34 locations in ponds 1 and 2, respectively. Regression tree analyses were used to determine the most influential water quality parameters for the prediction of E. coli levels. Correlations between E. coli and water quality covariates were not strong and were inconsistently significant. Shoreline sample locations had higher E. coli concentrations than interior pond samples and significant differences were observed when comparing these two groups. Regression trees provided fairly accurate predictions of E. coli levels based on water quality parameters with R2 values ranging from 0.70 to 0.93. Factors identified via the regression trees varied by sampling date but common leading covariates included cyanobacteria, organic matter, and turbidity. Results indicated environmental covariates, sensed either remotely or in situ, could be useful to delineate areas with different E. coli survival conditions across irrigation ponds and potentially other water bodies such as lakes, rivers, or bays.
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Affiliation(s)
- M D Stocker
- Oak Ridge Institute for Science and Education, United States of America; USDA-ARS Environmental Microbial and Food Safety Laboratory, United States of America.
| | - Y A Pachepsky
- USDA-ARS Environmental Microbial and Food Safety Laboratory, United States of America
| | - R L Hill
- Environmental Science and Technology, University of Maryland, United States of America
| | - K G Sellner
- Hood College, Frederick, MD, United States of America
| | - D Macarisin
- Office of Regulatory Science, Center for Food Safety and Applied Nutrition, Food and Drug Administration, College Park, MD 20740, United States of America
| | - K W Staver
- Wye Research and Education Center, University of Maryland, United States of America
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Couto-Rodríguez RL, Montalvo-Rodríguez R. Temporal Analysis of the Microbial Community from the Crystallizer Ponds in Cabo Rojo, Puerto Rico, Using Metagenomics. Genes (Basel) 2019; 10:E422. [PMID: 31159288 PMCID: PMC6627146 DOI: 10.3390/genes10060422] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Revised: 05/28/2019] [Accepted: 05/29/2019] [Indexed: 01/21/2023] Open
Abstract
The Cabo Rojo solar salterns are a hypersaline environment located in a tropical climate, where conditions remain stable throughout the year. These conditions can favor the establishment of steady microbial communities. Little is known about the microbial composition that thrives in hypersaline environments in the tropics. The main goal of this study was to assess the microbial diversity present in the crystallizer ponds of Cabo Rojo, in terms of structure and metabolic processes across time using metagenomic techniques. Three samplings (December 2014, March and July 2016) were carried out, where water samples (50 L each) were filtered through a Millipore pressurized filtering system. DNA was subsequently extracted using physical-chemical methods and sequenced using paired end Illumina technologies. The sequencing effort produced three paired end libraries with a total of 111,816,040 reads, that were subsequently assembled into three metagenomes. Out of the phyla detected, the microbial diversity was dominated in all three samples by Euryarchaeota, followed by Bacteroidetes and Proteobacteria. However, sample MFF1 (for Muestreo Final Fraternidad) exhibited a higher diversity, with 12 prokaryotic phyla detected at 34% NaCl (w/v), when compared to samples MFF2 and MFF3, which only exhibited three phyla. Precipitation events might be one of the contributing factors to the change in the microbial community composition through time. Diversity at genus level revealed a more stable community structure, with an overwhelming dominance of the square archaeon Haloquadratum in the three metagenomes. Furthermore, functional annotation was carried out in order to detect genes related to metabolic processes, such as carbon, nitrogen, and sulfur cycles. The presence of gene sequences related to nitrogen fixation, ammonia oxidation, sulfate reduction, sulfur oxidation, and phosphate solubilization were detected. Through binning methods, four putative novel genomes were obtained, including a possible novel genus belonging to the Bacteroidetes and possible new species for the genera Natronomonas, Halomicrobium, and Haloquadratum. Using a metagenomic approach, a 3-year study has been performed in a Caribbean hypersaline environment. When compared to other salterns around the world, the Cabo Rojo salterns harbor a similar community composition, which is stable through time. Moreover, an analysis of gene composition highlights the importance of the microbial community in the biogeochemical cycles at hypersaline environments.
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Affiliation(s)
- Ricardo L Couto-Rodríguez
- Department of Microbiology and Cell Science, University of Florida, Gainesville, FL 32603, USA.
- Biology Department, Box 9000, University of Puerto Rico, Mayagüez, PR 00681, USA.
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Cai R, Yin F, Zhang Z, Tian Y, Zhou N. Functional chimera aptamer and molecular beacon based fluorescent detection of Staphylococcus aureus with strand displacement-target recycling amplification. Anal Chim Acta 2019; 1075:128-136. [PMID: 31196418 DOI: 10.1016/j.aca.2019.05.014] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2019] [Revised: 04/17/2019] [Accepted: 05/05/2019] [Indexed: 01/09/2023]
Abstract
A fluorescent detection of Staphylococcus aureus (S. aureus) is established based on a finely designed functional chimera sequence, a molecular beacon (MB), and strand displacement target recycling. The chimera sequence, which consists of the aptamer sequence of S. aureus and the complementary sequence of MB, can form a hairpin structure due to the existence of intramolecular complementary regions. When S. aureus is present, it binds to the aptamer region of the chimera, opens the hairpin and unlocks the complementary sequence of MB. Subsequently, the MB is opened and intensive fluorescence signal is restored. To increase the sensitivity of the detection, signal amplification is achieved through strand displacement-based target recycling. With the catalysis of Nb. Bpu10I nicking endonuclease and Bsm DNA polymerase, the MB sequence can be cleaved and then elongated to form a complete duplex with the chimera, during which S. aureus is displaced from the chimera and proceeded to the next round of the reaction. This assay displays a linear correlation between the fluorescence intensity and the logarithm of the concentration of S. aureus within a broad concentration range from 80 CFU/mL to 8 × 106 CFU/mL. The detection limit of 39 CFU/mL can be derived. The assay was applied to detect S. aureus in different water samples, and satisfactory recovery and repeatability were achieved. Hence the designed chimera sequence and established assay have potential application in environmental pollution monitoring.
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Affiliation(s)
- Rongfeng Cai
- The Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi, 214122, China
| | - Fan Yin
- The Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi, 214122, China
| | - Zhongwen Zhang
- The Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi, 214122, China
| | - Yaping Tian
- The Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi, 214122, China
| | - Nandi Zhou
- The Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi, 214122, China.
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Bi X, Dai W, Wang X, Dong S, Zhang S, Zhang D, Shi H. Effects of Bacillus subtilis on the growth, colony maintenance, and attached bacterial community composition of colonial cyanobacteria. Environ Sci Pollut Res Int 2019; 26:14977-14987. [PMID: 30919182 DOI: 10.1007/s11356-019-04902-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Accepted: 03/18/2019] [Indexed: 06/09/2023]
Abstract
In freshwater aquaculture ponds, application of algicidal Bacillus is a promising way in the control of cyanobacterial blooms. To best understand Bacillus algicidal characters and mechanisms in the field, different-sized colonial cyanobacteria were isolated from an aquaculture pond, and the effects of B. subtilis on their growth, colony maintenance, and colony-attached bacterial community composition were investigated. The results showed that B. subtilis could inhibit the growth of colonial cyanobacteria. Bigger-sized colonies isolated from the field could spontaneously disintegrate into smaller-sized colonies in the laboratory. Algicidal B. subtilis could accelerate the disintegration of colonies and decrease colony size. B. subtilis not only decreased the colony-attached bacterial community diversity but also changed its composition. B. subtilis increased the relative abundances of some attached bacterial genera, including Pseudomonas, Shewanella, Bacillus, Shinella, Rhizobium, and Ensifer. These bacteria with algicidal, microcystin-degrading, and flocculating activities might be an important contributor to algicidal effects of B. subtilis on colonial cyanobacteria.
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Affiliation(s)
- Xiangdong Bi
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, Department of Fisheries Sciences, Tianjin Agricultural University, Jinjing Road No.22, Xiqing District, Tianjin, 300384, China.
| | - Wei Dai
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, Department of Fisheries Sciences, Tianjin Agricultural University, Jinjing Road No.22, Xiqing District, Tianjin, 300384, China
| | - Xueying Wang
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, Department of Fisheries Sciences, Tianjin Agricultural University, Jinjing Road No.22, Xiqing District, Tianjin, 300384, China
| | - Shaojie Dong
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, Department of Fisheries Sciences, Tianjin Agricultural University, Jinjing Road No.22, Xiqing District, Tianjin, 300384, China
| | - Shulin Zhang
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, Department of Fisheries Sciences, Tianjin Agricultural University, Jinjing Road No.22, Xiqing District, Tianjin, 300384, China
| | - Dajuan Zhang
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, Department of Fisheries Sciences, Tianjin Agricultural University, Jinjing Road No.22, Xiqing District, Tianjin, 300384, China
| | - Hongyue Shi
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, Department of Fisheries Sciences, Tianjin Agricultural University, Jinjing Road No.22, Xiqing District, Tianjin, 300384, China
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Kalwasińska A, Deja-Sikora E, Szabó A, Felföldi T, Kosobucki P, Brzezinska MS, Walczak M. Salino-alkaline lime of anthropogenic origin a reservoir of diverse microbial communities. Sci Total Environ 2019; 655:842-854. [PMID: 30481711 DOI: 10.1016/j.scitotenv.2018.11.246] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Revised: 11/16/2018] [Accepted: 11/16/2018] [Indexed: 06/09/2023]
Abstract
This paper presents study on the microbiome of a unique extreme environment - saline and alkaline lime, a by-product of soda ash and table salt production in Janikowo, central Poland. High-throughput 16S rDNA amplicon sequencing was used to reveal the structure of bacterial and archaeal communities in the lime samples, taken from repository ponds differing in salinity (2.3-25.5% NaCl). Surprisingly abundant and diverse bacterial communities were discovered in this extreme environment. The most important geochemical drivers of the observed microbial diversity were salinity, calcium ions, nutrients, and water content. The bacterial and archaeal communities in saline, alkaline lime were similar to those found in natural haloalkaline environments. Although the archaeal contribution to the whole microbial community was lower than 4%, the four archaeal genera Natronomonas, Halorubrum, Halobellus, and Halapricum constituted the core microbiome of saline, alkaline lime - a set of OTUs (> 0.1% of total archaeal relative abundance) present in all samples under study. The high proportion of novel, unclassified archaeal and bacterial sequences (not identified at 97% similarity level) in the 16S rRNA gene libraries indicated that potentially new genera, especially within the class of Thermoplasmata inhabit this unique environment.
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Affiliation(s)
- Agnieszka Kalwasińska
- Department of Environmental Microbiology and Biotechnology, Faculty of Biology and Environmental Protection, Nicolaus Copernicus University in Toruń, Lwowska 1, 87-100 Toruń, Poland.
| | - Edyta Deja-Sikora
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń, Wileńska 4, 87-100 Toruń, Poland; Department of Microbiology, Faculty of Biology and Environmental Protection, Nicolaus Copernicus University in Toruń, Lwowska 1, 87-100 Toruń, Poland
| | - Attila Szabó
- Department of Microbiology, ELTE Eötvös Loránd University, PázmányPéterstny. 1/c. H-1117 Budapest, Hungary
| | - Tamás Felföldi
- Department of Microbiology, ELTE Eötvös Loránd University, PázmányPéterstny. 1/c. H-1117 Budapest, Hungary
| | - Przemysław Kosobucki
- Department of Food Analysis and Environmental Protection, Faculty of Chemical Technology and Engineering, UTP University of Science and Technology, Seminaryjna 3, 85-326 Bydgoszcz, Poland
| | - Maria Swiontek Brzezinska
- Department of Environmental Microbiology and Biotechnology, Faculty of Biology and Environmental Protection, Nicolaus Copernicus University in Toruń, Lwowska 1, 87-100 Toruń, Poland
| | - Maciej Walczak
- Department of Environmental Microbiology and Biotechnology, Faculty of Biology and Environmental Protection, Nicolaus Copernicus University in Toruń, Lwowska 1, 87-100 Toruń, Poland
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Cheng J, Song Y, Guo W, Miao Y, Chen S, Zhou J. Developing microporous fibrous-diaphragm aerator to decrease bubble generation diameter for improving microalgal growth with CO 2 fixation in a raceway pond. Bioresour Technol 2019; 276:28-34. [PMID: 30605836 DOI: 10.1016/j.biortech.2018.12.090] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2018] [Revised: 12/19/2018] [Accepted: 12/25/2018] [Indexed: 06/09/2023]
Abstract
A novel microporous fibrous-diaphragm aerator (FDA) was proposed to generate pressurized gas with check valve to penetrate through millions of micropores (6-126 μm) of expanded fibrous diaphragm on internal support, thus decreasing bubble generation diameter and increasing bubble residence time for improving microalgal growth with CO2 fixation in a raceway pond. When installation angle of FDA internal support increased from 0° to 45°, bubble generation time and diameter first decreased (to valley bottoms of 4 ms and 0.45 mm at 22°) and then increased. Compared to traditional strip aerator, bubble generation time and diameter decreased by 50% and 60% through FDA with support installation angle of 22° and average pore diameter of 28 µm, while gas-solution mixing time decreased by 22% and mass transfer coefficient increased by 40%, leading to increased actual photochemical efficiency (by 80%) and increased biomass yield (by 38.5%) of Arthrospira cells with pure CO2 aeration through FDA.
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Affiliation(s)
- Jun Cheng
- State Key Laboratory of Clean Energy Utilization, Zhejiang University, Hangzhou 310027, China.
| | - Yanmei Song
- State Key Laboratory of Clean Energy Utilization, Zhejiang University, Hangzhou 310027, China
| | - Wangbiao Guo
- State Key Laboratory of Clean Energy Utilization, Zhejiang University, Hangzhou 310027, China
| | - Yi Miao
- State Key Laboratory of Clean Energy Utilization, Zhejiang University, Hangzhou 310027, China
| | - Shutong Chen
- State Key Laboratory of Clean Energy Utilization, Zhejiang University, Hangzhou 310027, China
| | - Junhu Zhou
- State Key Laboratory of Clean Energy Utilization, Zhejiang University, Hangzhou 310027, China
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Cai W, Willmon E, Burgos FA, Ray CL, Hanson T, Arias CR. Biofilm and Sediment are Major Reservoirs of Virulent Aeromonas hydrophila (vAh) in Catfish Production Ponds. J Aquat Anim Health 2019; 31:112-120. [PMID: 30549304 DOI: 10.1002/aah.10056] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Accepted: 12/05/2018] [Indexed: 06/09/2023]
Abstract
The genus Aeromonas comprises more than 60 recognized species that include many important fish pathogens such as the causative agents of furunculosis and motile Aeromonas septicemia (MAS). Although MAS is typically considered a secondary infection, a new virulent A. hydrophila (vAh) strain has been causing devastating losses to the catfish industry in Alabama since 2009. The objective of this study was to characterize the spatiotemporal distribution of Aeromonas sp. and, specifically, vAh in a commercial catfish farm in western Alabama. We sampled biofilm, sediment, and water from three ponds during four consecutive months during the growing season. Total aerobic counts were between 8.8 × 105 and 1.5 × 106 CFU/mL but were significantly higher in biofilm and sediment than in water throughout the sampling period. Total Aeromonas counts in water samples significantly increased in all three ponds after the month of August and ranged from 7.8 × 103 to 4.9 × 104 CFU/mL. A similar trend was observed in biofilm and sediment samples for which total Aeromonas counts increased in samples taken in late summer to early fall. Over time, the concentration of Aeromonas in water samples decreased by one order of magnitude, while there was a significant increase in sediments as temperature dropped. The virulent vAh was detected in 35.4% of biofilm samples and 22.9% of sediment samples, suggesting that both environments serve as the major reservoir for this pathogen. Future monitoring efforts should focus on targeting sediment and biofilms since samples of these appear to naturally enrich for the presence of vAh and other Aeromonas species.
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Affiliation(s)
- Wenlong Cai
- School of Fisheries, Aquaculture, and Aquatic Sciences, Auburn University, 203 Swingle Hall, Auburn, Alabama, 36849, USA
| | - Evelyn Willmon
- School of Fisheries, Aquaculture, and Aquatic Sciences, Auburn University, 203 Swingle Hall, Auburn, Alabama, 36849, USA
- Department of Poultry Sciences, Auburn University, 260 Lem Morrison Drive, Auburn, Alabama, 36849, USA
| | - Francisca A Burgos
- School of Fisheries, Aquaculture, and Aquatic Sciences, Auburn University, 203 Swingle Hall, Auburn, Alabama, 36849, USA
| | - Candis L Ray
- School of Fisheries, Aquaculture, and Aquatic Sciences, Auburn University, 203 Swingle Hall, Auburn, Alabama, 36849, USA
- U.S. Department of Agriculture, Agricultural Research Service, Harry K. Dupree Stuttgart National Aquaculture Research Center, Stuttgart, Arkansas, 72160, USA
| | - Terry Hanson
- School of Fisheries, Aquaculture, and Aquatic Sciences, Auburn University, 203 Swingle Hall, Auburn, Alabama, 36849, USA
| | - C R Arias
- School of Fisheries, Aquaculture, and Aquatic Sciences, Auburn University, 203 Swingle Hall, Auburn, Alabama, 36849, USA
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Zhou Q, Wang M, Zhong X, Liu P, Xie X, Wangxiao J, Sun Y. Dissemination of resistance genes in duck/fish polyculture ponds in Guangdong Province: correlations between Cu and Zn and antibiotic resistance genes. Environ Sci Pollut Res Int 2019; 26:8182-8193. [PMID: 30697656 DOI: 10.1007/s11356-018-04065-2] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2018] [Accepted: 12/20/2018] [Indexed: 06/09/2023]
Abstract
Duck/fish polyculture farming is a typical farming model in the Pearl River delta in southern China. We examined soil, water, and sediment samples from three duck-fish farms in Guangdong Province in September and December 2014. We determined the abundance of three metal resistance genes, 16S rDNA, and 23 antibiotic resistance genes encoding resistance to tetracycline, sulfonamides, quinolones, chloramphenicol, and β-lactamases. Microbial community structure was quantified by Illumina high-throughput sequencing of 16S rDNA genes. We found a prevalence of antibiotic resistance genes and the sul1, sul2, tetA, tetM, aac(6')-Ib, and floR genes were the most abundant. Levels of Cu and Zn were significantly correlated with numerous ARG types and sul2, floR, and tetM were identified as potential antibiotic resistance gene indicators. Cu levels were significantly and positively correlated with the relative abundance of sul3, tetT, tetW, qnrB, qnrS, fexB, sul1, sul2, tetM, and qnrA. Zn was significantly correlated to relative abundance of sul2, sul3, tetM, tetA, tetT, tetW, qnrA, qnrB, qnrS, aac(6')-Ib, qepA, blaSHV, cmlA, floR, fexA, cfr, and fexB. The levels of Acinetobacter, Brevibacillus, and Wautersiella showed significant positive correlations with metal resistance genes as well as qnrB, oqxA, oqxB, and blaSHV (p > 0.8). Sphingobacterium, Flavobacterium, Acidothermus, and Corynebacterium had significant correlations with abundance of tetracycline resistance genes, sulfonamide resistance genes, blaTEM, blaCTX, and cfr (p > 0.8). Sphingobacterium, Flavobacterium, Acidothermus, and Corynebacterium were most abundant in soil samples while Acinetobacter, Brevibacillus, and Wautersiella were most abundant in water samples. Dissemination of antibiotic resistance genes in aquaculture environments is extensive and tracing their origins is necessary to establish risk assessment methods required for aquatic environmental protection.
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Affiliation(s)
- Qin Zhou
- National Laboratory of safety Evaluation (Environmental Assessment) of Veterinary Drugs, South China Agricultural University, Guangzhou, 510642, China
- National Risk Assessment Laboratory for Antimicrobial Resistance of Animal Original Bacteria, South China Agricultural University, Guangzhou, 510642, China
| | - Mianzhi Wang
- National Laboratory of safety Evaluation (Environmental Assessment) of Veterinary Drugs, South China Agricultural University, Guangzhou, 510642, China
- National Risk Assessment Laboratory for Antimicrobial Resistance of Animal Original Bacteria, South China Agricultural University, Guangzhou, 510642, China
- Guangdong Provincial Key Laboratory of Veterinary Pharmaceutics Development and Safety Evaluation, South China Agricultural University, Guangzhou, 510642, China
| | - Xiaoxia Zhong
- Guangdong Provincial Key Laboratory of Veterinary Pharmaceutics Development and Safety Evaluation, South China Agricultural University, Guangzhou, 510642, China
| | - Peng Liu
- National Risk Assessment Laboratory for Antimicrobial Resistance of Animal Original Bacteria, South China Agricultural University, Guangzhou, 510642, China
- Guangdong Provincial Key Laboratory of Veterinary Pharmaceutics Development and Safety Evaluation, South China Agricultural University, Guangzhou, 510642, China
| | - Xiying Xie
- National Laboratory of safety Evaluation (Environmental Assessment) of Veterinary Drugs, South China Agricultural University, Guangzhou, 510642, China
- National Risk Assessment Laboratory for Antimicrobial Resistance of Animal Original Bacteria, South China Agricultural University, Guangzhou, 510642, China
| | - Junyi Wangxiao
- National Laboratory of safety Evaluation (Environmental Assessment) of Veterinary Drugs, South China Agricultural University, Guangzhou, 510642, China
- National Risk Assessment Laboratory for Antimicrobial Resistance of Animal Original Bacteria, South China Agricultural University, Guangzhou, 510642, China
| | - Yongxue Sun
- National Laboratory of safety Evaluation (Environmental Assessment) of Veterinary Drugs, South China Agricultural University, Guangzhou, 510642, China.
- National Risk Assessment Laboratory for Antimicrobial Resistance of Animal Original Bacteria, South China Agricultural University, Guangzhou, 510642, China.
- Guangdong Provincial Key Laboratory of Veterinary Pharmaceutics Development and Safety Evaluation, South China Agricultural University, Guangzhou, 510642, China.
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Wang L, Su H, Hu X, Xu Y, Xu W, Huang X, Li Z, Cao Y, Wen G. Abundance and removal of antibiotic resistance genes (ARGs) in the rearing environments of intensive shrimp aquaculture in South China. J Environ Sci Health B 2019; 54:211-218. [PMID: 30755094 DOI: 10.1080/03601234.2018.1550310] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Although research regarding antibiotic resistance genes (ARGs) in aquaculture environments has gained increasing scientific interest, further studies are required to understand the abundances and removal mechanisms of ARGs during the entire rearing period of shrimp aquaculture. Thus, in this study, abundances, distributions and removal rates of ARGs in different environmental compartments of intensive shrimp farms in South China were investigated during the entire rearing period. The results indicated that sul1 and cmlA were the predominant ARGs in the water and sediment samples. Additionally, the total abundance of ARGs was higher in shrimp pond water than in the source water and farm effluent. Moreover, sediment samples indicated significantly higher ARG abundances than water samples from the shrimp ponds (P < 0.05). Environmental factors were found to significantly affect the distribution of ARGs in shrimp rearing environments. Furthermore, stable ponds aided the removal of ARGs from shrimp pond water. This study accounted for temporal variations in ARG abundances as well as removal of ARGs in different environmental compartments during the entire shrimp rearing period. However, additional research is required to optimize the water treatment process for removal of ARGs from the aquaculture.
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Affiliation(s)
- Linglong Wang
- a National Demonstration Center for Experimental Fisheries Science Education , Shanghai Ocean University , Shanghai, P.R. China
| | - Haochang Su
- b Key Laboratory of South China Sea Fishery Resources Exploitation and Utilization, Ministry of Agriculture and Rural Affairs, Key Laboratory of Fishery Ecology and Environment, Guangdong Province , South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences , Guangzhou , China
| | - Xiaojuan Hu
- b Key Laboratory of South China Sea Fishery Resources Exploitation and Utilization, Ministry of Agriculture and Rural Affairs, Key Laboratory of Fishery Ecology and Environment, Guangdong Province , South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences , Guangzhou , China
| | - Yu Xu
- b Key Laboratory of South China Sea Fishery Resources Exploitation and Utilization, Ministry of Agriculture and Rural Affairs, Key Laboratory of Fishery Ecology and Environment, Guangdong Province , South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences , Guangzhou , China
| | - Wujie Xu
- b Key Laboratory of South China Sea Fishery Resources Exploitation and Utilization, Ministry of Agriculture and Rural Affairs, Key Laboratory of Fishery Ecology and Environment, Guangdong Province , South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences , Guangzhou , China
| | - Xiaoshuai Huang
- b Key Laboratory of South China Sea Fishery Resources Exploitation and Utilization, Ministry of Agriculture and Rural Affairs, Key Laboratory of Fishery Ecology and Environment, Guangdong Province , South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences , Guangzhou , China
| | - Zhuojia Li
- b Key Laboratory of South China Sea Fishery Resources Exploitation and Utilization, Ministry of Agriculture and Rural Affairs, Key Laboratory of Fishery Ecology and Environment, Guangdong Province , South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences , Guangzhou , China
| | - Yucheng Cao
- b Key Laboratory of South China Sea Fishery Resources Exploitation and Utilization, Ministry of Agriculture and Rural Affairs, Key Laboratory of Fishery Ecology and Environment, Guangdong Province , South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences , Guangzhou , China
| | - Guoliang Wen
- a National Demonstration Center for Experimental Fisheries Science Education , Shanghai Ocean University , Shanghai, P.R. China
- b Key Laboratory of South China Sea Fishery Resources Exploitation and Utilization, Ministry of Agriculture and Rural Affairs, Key Laboratory of Fishery Ecology and Environment, Guangdong Province , South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences , Guangzhou , China
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48
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Solimeno A, García J. Microalgae and bacteria dynamics in high rate algal ponds based on modelling results: Long-term application of BIO_ALGAE model. Sci Total Environ 2019; 650:1818-1831. [PMID: 30286350 DOI: 10.1016/j.scitotenv.2018.09.345] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2018] [Revised: 09/20/2018] [Accepted: 09/27/2018] [Indexed: 06/08/2023]
Abstract
The mechanistic model (BIO_ALGAE) for microalgae-bacteria based wastewater treatment systems simulation was validated in the long-term (months) using experimental results from a pilot high rate algal pond (HRAP) treating municipal wastewater. Simulated results were compared with data gathered during two different seasons (summer and winter), and with the HRAP operating at different hydraulic retention times (HRT, 4 and 8 days, respectively). The model was able to simulate with a good degree of accuracy the dynamics of different components in the pond, including the total biomass (bacteria and microalgae). By means of practical study cases, the influences of different HRT operating strategies and seasonal variations of temperature and irradiance were investigated for the relative proportion of microalgae and bacteria, and biomass production over a year cycle. Model predictions show that the proportion of microalgae in the microalgal/bacterial biomass is quite similar in warmer months if the pond is operated with 8-day HRT (76-78%) or 4-day HRT (60-75%). Significant differences were observed in colder months (4-day HRT (27-33%) and 8-day HRT (65-68%)). The model identified a scenario in which overall microalgae production and ammonium removal efficiency were optimized. By operating the HRAP with lower HRT (4 days) in warmer months and higher HRT (8 days) in colder months, the average annual microalgae production increased up to 14.1 gTSS m-2d-1, in contrast with 10.2 gTSS m-2d-1 and 9.2 gTSS m-2d-1 operating with constant HRAP (4 and 8 days, respectively) over a year cycle.
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Affiliation(s)
- Alessandro Solimeno
- GEMMA - Group of Environmental Engineering and Microbiology, Department of Civil and Environmental Engineering, Universitat Politècnica de Catalunya-BarcelonaTech, c/Jordi Girona, 1-3, Building D1, E-08034 Barcelona, Spain.
| | - Joan García
- GEMMA - Group of Environmental Engineering and Microbiology, Department of Civil and Environmental Engineering, Universitat Politècnica de Catalunya-BarcelonaTech, c/Jordi Girona, 1-3, Building D1, E-08034 Barcelona, Spain
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49
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Olano H, Martigani F, Somma A, Aubriot L. Wastewater discharge with phytoplankton may favor cyanobacterial development in the main drinking water supply river in Uruguay. Environ Monit Assess 2019; 191:146. [PMID: 30737570 DOI: 10.1007/s10661-019-7288-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Accepted: 01/30/2019] [Indexed: 06/09/2023]
Abstract
The main drinking water source supplying Uruguay (Santa Lucía River, SLR) was threatened in 2013 by a cyanobacterial bloom transported downstream to the water treatment plant that provides water to half of this country population. Several eutrophic reservoirs and stabilization ponds located in the river basin may have been the source of cyanobacterial populations. Such conditions may be common in productive basins; however, few studies have evaluated the impact of microalgae from wastewater stabilization ponds on rivers and its viability downstream. The effect of a dairy wastewater effluent on SLR was studied by means of nutrient and chlorophyll a loads, phytoplankton composition, and effluent incubation in river water in order to evaluate the potential development of cyanobacteria. Total phosphorus and nitrogen loads of the effluent reached up to 25% and 17% of SLR, respectively, while chlorophyll a was up to 37%. The upstream-downstream evaluation showed an increase in dissolved phosphorus and chlorophyll a. The effluent phytoplankton (14.16 mm3 L-1) was dominated by organisms < 10 μm and diatoms (91%), and 3% of cyanobacteria. Cyanobacteria were not detected in SLR, though it appeared downstream of the effluent discharge. At the end of the bioassay, cyanobacterial biomass became the dominant group (37%). This study shows the potential development of cyanobacteria present in industrial effluents when diluted in river water. The effect of phytoplankton discharge from stabilization ponds is not generally considered in monitoring assessments and environment management, despite representing a particular risk if the water body is used as a drinking water source.
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Affiliation(s)
- H Olano
- Grupo de Ecología y Fisiología de Fitoplancton, Sección Limnología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400, Montevideo, Uruguay
| | - F Martigani
- Grupo de Ecología y Fisiología de Fitoplancton, Sección Limnología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400, Montevideo, Uruguay
| | - A Somma
- Grupo de Ecología y Fisiología de Fitoplancton, Sección Limnología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400, Montevideo, Uruguay
| | - L Aubriot
- Grupo de Ecología y Fisiología de Fitoplancton, Sección Limnología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400, Montevideo, Uruguay.
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50
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Pizzera A, Scaglione D, Bellucci M, Marazzi F, Mezzanotte V, Parati K, Ficara E. Digestate treatment with algae-bacteria consortia: A field pilot-scale experimentation in a sub-optimal climate area. Bioresour Technol 2019; 274:232-243. [PMID: 30513411 DOI: 10.1016/j.biortech.2018.11.067] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Revised: 11/13/2018] [Accepted: 11/18/2018] [Indexed: 06/09/2023]
Abstract
This paper addresses the efficiency of a microalgae-based agricultural digestate treatment at pilot-scale in an outdoor raceway pond (880 L, pH-dependent CO2 dosage) and in a bubble column (74.5 L, air-bubbling). Specifically, nitrogen removal, evolution of the algae-bacteria consortium, and the actual process applicability in the Po Valley climate are discussed. The performance of the two reactors varied seasonally. The average algal productivity in the raceway was 32.4 ± 33.1 mg TSS·L-1·d-1 (8.2 ± 8.5 g TSS·m-2·d-1) while in the PBR it was 25.6 ± 26.8 mg TSS·L-1·d-1; the average nitrogen removal was 20 ± 29% (maximum 78%) and 22 ± 29% (maximum 71%) in the raceway and in the column, respectively. Nevertheless, nitrification had a key role as 61 ± 24% and 52 ± 32% of the nitrogen load was oxidized in the raceway and in the column, respectively.
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Affiliation(s)
- A Pizzera
- Politecnico di Milano, Department of Civil and Environmental Engineering (DICA), P.zza L. da Vinci 32, 20133 Milano, Italy
| | - D Scaglione
- Politecnico di Milano, Department of Civil and Environmental Engineering (DICA), P.zza L. da Vinci 32, 20133 Milano, Italy
| | - M Bellucci
- Politecnico di Milano, Department of Civil and Environmental Engineering (DICA), P.zza L. da Vinci 32, 20133 Milano, Italy
| | - F Marazzi
- Università degli Studi di Milano, Bicocca, Department of Earth and Environmental Sciences (DISAT), P.zza della Scienza 1, 20126 Milano, Italy
| | - V Mezzanotte
- Università degli Studi di Milano, Bicocca, Department of Earth and Environmental Sciences (DISAT), P.zza della Scienza 1, 20126 Milano, Italy
| | - K Parati
- Istituto Sperimentale Italiano Lazzaro Spallanzani, Località La Quercia, Cremona, Rivolta d'Adda, Italy
| | - E Ficara
- Politecnico di Milano, Department of Civil and Environmental Engineering (DICA), P.zza L. da Vinci 32, 20133 Milano, Italy.
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