• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5071016)   Today's Articles (71)
For: Zhang Z, Thirumalai D. Dissecting the kinematics of the kinesin step. Structure 2012;20:628-40. [PMID: 22483110 DOI: 10.1016/j.str.2012.02.013] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2011] [Revised: 01/19/2012] [Accepted: 02/09/2012] [Indexed: 01/04/2023]
Number Cited by Other Article(s)
1
Zhang Y, Luo M, Wu P, Wu S, Lee TY, Bai C. Application of Computational Biology and Artificial Intelligence in Drug Design. Int J Mol Sci 2022;23:13568. [PMID: 36362355 PMCID: PMC9658956 DOI: 10.3390/ijms232113568] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Revised: 10/29/2022] [Accepted: 11/03/2022] [Indexed: 08/24/2023]  Open
2
Vu HT, Zhang Z, Tehver R, Thirumalai D. Plus and minus ends of microtubules respond asymmetrically to kinesin binding by a long-range directionally driven allosteric mechanism. SCIENCE ADVANCES 2022;8:eabn0856. [PMID: 35417226 PMCID: PMC9007332 DOI: 10.1126/sciadv.abn0856] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 02/24/2022] [Indexed: 06/14/2023]
3
Takaki R, Dey A, Shi G, Thirumalai D. Theory and simulations of condensin mediated loop extrusion in DNA. Nat Commun 2021;12:5865. [PMID: 34620869 PMCID: PMC8497514 DOI: 10.1038/s41467-021-26167-1] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Accepted: 09/15/2021] [Indexed: 11/08/2022]  Open
4
Hasnain S, Mugnai ML, Thirumalai D. Effects of Gold Nanoparticles on the Stepping Trajectories of Kinesin. J Phys Chem B 2021;125:10432-10444. [PMID: 34499499 DOI: 10.1021/acs.jpcb.1c02218] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
5
Bai C, Wang J, Mondal D, Du Y, Ye RD, Warshel A. Exploring the Activation Process of the β2AR-Gs Complex. J Am Chem Soc 2021;143:11044-11051. [PMID: 34255502 DOI: 10.1021/jacs.1c03696] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
6
Goldtzvik Y, Thirumalai D. Multiscale Coarse-Grained Model for the Stepping of Molecular Motors with Application to Kinesin. J Chem Theory Comput 2021;17:5358-5368. [PMID: 34251798 DOI: 10.1021/acs.jctc.1c00317] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
7
Luettmer-Strathmann J, Adeli Koudehi M, Paudyal N. Five-Site Model for Brownian Dynamics Simulations of a Molecular Walker in Three Dimensions. J Phys Chem B 2021;125:4726-4733. [PMID: 33909422 DOI: 10.1021/acs.jpcb.1c02114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
8
Mechanistic basis of propofol-induced disruption of kinesin processivity. Proc Natl Acad Sci U S A 2021;118:2023659118. [PMID: 33495322 DOI: 10.1073/pnas.2023659118] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
9
How Kinesin-1 Utilize the Energy of Nucleotide: The Conformational Changes and Mechanochemical Coupling in the Unidirectional Motion of Kinesin-1. Int J Mol Sci 2020;21:ijms21186977. [PMID: 32972035 PMCID: PMC7555842 DOI: 10.3390/ijms21186977] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Revised: 09/12/2020] [Accepted: 09/21/2020] [Indexed: 12/23/2022]  Open
10
The catalytic dwell in ATPases is not crucial for movement against applied torque. Nat Chem 2020;12:1187-1192. [PMID: 32958886 DOI: 10.1038/s41557-020-0549-6] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 08/10/2020] [Indexed: 02/07/2023]
11
Guo SK, Xie P. A common chemomechanical coupling model for orphan and conventional kinesin molecular motors. Biophys Chem 2020;264:106427. [PMID: 32682233 DOI: 10.1016/j.bpc.2020.106427] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2020] [Revised: 06/07/2020] [Accepted: 07/01/2020] [Indexed: 01/12/2023]
12
Bigman LS, Levy Y. Protein Diffusion on Charged Biopolymers: DNA versus Microtubule. Biophys J 2020;118:3008-3018. [PMID: 32492371 DOI: 10.1016/j.bpj.2020.05.004] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2020] [Revised: 04/28/2020] [Accepted: 05/12/2020] [Indexed: 02/06/2023]  Open
13
Świątek M, Gudowska-Nowak E. Delineating elastic properties of kinesin linker and their sensitivity to point mutations. Sci Rep 2020;10:4832. [PMID: 32179821 PMCID: PMC7075872 DOI: 10.1038/s41598-020-61399-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Accepted: 02/24/2020] [Indexed: 12/03/2022]  Open
14
Monroy BY, Tan TC, Oclaman JM, Han JS, Simó S, Niwa S, Nowakowski DW, McKenney RJ, Ori-McKenney KM. A Combinatorial MAP Code Dictates Polarized Microtubule Transport. Dev Cell 2020;53:60-72.e4. [PMID: 32109385 DOI: 10.1016/j.devcel.2020.01.029] [Citation(s) in RCA: 89] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Revised: 11/19/2019] [Accepted: 01/27/2020] [Indexed: 01/14/2023]
15
How kinesin waits for ATP affects the nucleotide and load dependence of the stepping kinetics. Proc Natl Acad Sci U S A 2019;116:23091-23099. [PMID: 31659052 DOI: 10.1073/pnas.1913650116] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
16
Shi XX, Guo SK, Wang PY, Chen H, Xie P. All-atom molecular dynamics simulations reveal how kinesin transits from one-head-bound to two-heads-bound state. Proteins 2019;88:545-557. [PMID: 31589786 DOI: 10.1002/prot.25833] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2019] [Revised: 08/19/2019] [Accepted: 09/17/2019] [Indexed: 12/15/2022]
17
Lee J, Seyler SL, Pressé S. Hydrodynamic interaction facilitates the unsteady transport of two neighboring vesicles. J Chem Phys 2019;151:094108. [DOI: 10.1063/1.5113880] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
18
Recent Advances in Coarse-Grained Models for Biomolecules and Their Applications. Int J Mol Sci 2019;20:ijms20153774. [PMID: 31375023 PMCID: PMC6696403 DOI: 10.3390/ijms20153774] [Citation(s) in RCA: 73] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2019] [Revised: 07/28/2019] [Accepted: 07/30/2019] [Indexed: 12/23/2022]  Open
19
Mickolajczyk KJ, Cook ASI, Jevtha JP, Fricks J, Hancock WO. Insights into Kinesin-1 Stepping from Simulations and Tracking of Gold Nanoparticle-Labeled Motors. Biophys J 2019;117:331-345. [PMID: 31301807 DOI: 10.1016/j.bpj.2019.06.010] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2018] [Revised: 06/04/2019] [Accepted: 06/10/2019] [Indexed: 02/02/2023]  Open
20
Thirumalai D, Hyeon C, Zhuravlev PI, Lorimer GH. Symmetry, Rigidity, and Allosteric Signaling: From Monomeric Proteins to Molecular Machines. Chem Rev 2019;119:6788-6821. [DOI: 10.1021/acs.chemrev.8b00760] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
21
Thirumalai D, Hyeon C. Signalling networks and dynamics of allosteric transitions in bacterial chaperonin GroEL: implications for iterative annealing of misfolded proteins. Philos Trans R Soc Lond B Biol Sci 2019;373:rstb.2017.0182. [PMID: 29735736 DOI: 10.1098/rstb.2017.0182] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/01/2018] [Indexed: 12/14/2022]  Open
22
Advances in coarse-grained modeling of macromolecular complexes. Curr Opin Struct Biol 2018;52:119-126. [PMID: 30508766 DOI: 10.1016/j.sbi.2018.11.005] [Citation(s) in RCA: 101] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2018] [Revised: 11/05/2018] [Accepted: 11/17/2018] [Indexed: 01/12/2023]
23
Xie P, Chen H. A non-tight chemomechanical coupling model for force-dependence of movement dynamics of molecular motors. Phys Chem Chem Phys 2018;20:4752-4759. [PMID: 29379931 DOI: 10.1039/c7cp05557a] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
24
Shi XX, Fu YB, Guo SK, Wang PY, Chen H, Xie P. Investigating role of conformational changes of microtubule in regulating its binding affinity to kinesin by all-atom molecular dynamics simulation. Proteins 2018;86:1127-1139. [PMID: 30132979 DOI: 10.1002/prot.25592] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Revised: 08/05/2018] [Accepted: 08/16/2018] [Indexed: 11/08/2022]
25
Structural consequences of hereditary spastic paraplegia disease-related mutations in kinesin. Proc Natl Acad Sci U S A 2018;115:E10822-E10829. [PMID: 30366951 DOI: 10.1073/pnas.1810622115] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
26
Wang Q, Jana B, Diehl MR, Cheung MS, Kolomeisky AB, Onuchic JN. Molecular mechanisms of the interhead coordination by interhead tension in cytoplasmic dyneins. Proc Natl Acad Sci U S A 2018;115:10052-10057. [PMID: 30224489 PMCID: PMC6176594 DOI: 10.1073/pnas.1806688115] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]  Open
27
Goldtzvik Y, Mugnai ML, Thirumalai D. Dynamics of Allosteric Transitions in Dynein. Structure 2018;26:1664-1677.e5. [PMID: 30270176 DOI: 10.1016/j.str.2018.08.005] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Revised: 07/19/2018] [Accepted: 08/08/2018] [Indexed: 12/20/2022]
28
Directionally biased sidestepping of Kip3/kinesin-8 is regulated by ATP waiting time and motor-microtubule interaction strength. Proc Natl Acad Sci U S A 2018;115:E7950-E7959. [PMID: 30093386 DOI: 10.1073/pnas.1801820115] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
29
Guo SK, Shi XX, Wang PY, Xie P. Processivity of dimeric kinesin-1 molecular motors. FEBS Open Bio 2018;8:1332-1351. [PMID: 30087836 PMCID: PMC6070657 DOI: 10.1002/2211-5463.12486] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2018] [Revised: 06/19/2018] [Accepted: 06/25/2018] [Indexed: 11/25/2022]  Open
30
Kuffel A, Szałachowska M. The significance of the properties of water for the working cycle of the kinesin molecular motor. J Chem Phys 2018;148:235101. [DOI: 10.1063/1.5020208] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
31
Rolls E, Erban R. Multi-resolution polymer Brownian dynamics with hydrodynamic interactions. J Chem Phys 2018;148:194111. [PMID: 30307198 DOI: 10.1063/1.5018595] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]  Open
32
Misiura M, Wang Q, Cheung MS, Kolomeisky AB. Theoretical Investigations of the Role of Mutations in Dynamics of Kinesin Motor Proteins. J Phys Chem B 2018;122:4653-4661. [PMID: 29630822 DOI: 10.1021/acs.jpcb.8b00830] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
33
Jiang N, Bailey ME, Burke J, Ross JL, Dima RI. Modeling the effects of lattice defects on microtubule breaking and healing. Cytoskeleton (Hoboken) 2017;74:3-17. [PMID: 27935245 DOI: 10.1002/cm.21346] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2016] [Revised: 11/29/2016] [Accepted: 11/29/2016] [Indexed: 12/19/2022]
34
Parsing the roles of neck-linker docking and tethered head diffusion in the stepping dynamics of kinesin. Proc Natl Acad Sci U S A 2017;114:E9838-E9845. [PMID: 29087307 DOI: 10.1073/pnas.1706014114] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]  Open
35
Molecular origin of the weak susceptibility of kinesin velocity to loads and its relation to the collective behavior of kinesins. Proc Natl Acad Sci U S A 2017;114:E8611-E8617. [PMID: 28973894 DOI: 10.1073/pnas.1710328114] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
36
Kubo S, Li W, Takada S. Allosteric conformational change cascade in cytoplasmic dynein revealed by structure-based molecular simulations. PLoS Comput Biol 2017;13:e1005748. [PMID: 28892477 PMCID: PMC5608440 DOI: 10.1371/journal.pcbi.1005748] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2017] [Revised: 09/21/2017] [Accepted: 08/29/2017] [Indexed: 01/27/2023]  Open
37
Mugnai ML, Thirumalai D. Kinematics of the lever arm swing in myosin VI. Proc Natl Acad Sci U S A 2017;114:E4389-E4398. [PMID: 28512223 PMCID: PMC5465893 DOI: 10.1073/pnas.1615708114] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
38
Anchor Effect of Interactions Between Kinesin's Nucleotide-Binding Pocket and Microtubule. Cell Mol Bioeng 2017;10:162-173. [PMID: 31719858 DOI: 10.1007/s12195-017-0477-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2016] [Accepted: 01/17/2017] [Indexed: 10/20/2022]  Open
39
Hwang W, Hyeon C. Quantifying the Heat Dissipation from a Molecular Motor's Transport Properties in Nonequilibrium Steady States. J Phys Chem Lett 2017;8:250-256. [PMID: 27983853 DOI: 10.1021/acs.jpclett.6b02657] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
40
Li L, Alper J, Alexov E. Cytoplasmic dynein binding, run length, and velocity are guided by long-range electrostatic interactions. Sci Rep 2016;6:31523. [PMID: 27531742 PMCID: PMC4987762 DOI: 10.1038/srep31523] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Accepted: 07/21/2016] [Indexed: 12/23/2022]  Open
41
Jana B, Onuchic JN. Strain Mediated Adaptation Is Key for Myosin Mechanochemistry: Discovering General Rules for Motor Activity. PLoS Comput Biol 2016;12:e1005035. [PMID: 27494025 PMCID: PMC4975490 DOI: 10.1371/journal.pcbi.1005035] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2016] [Accepted: 06/25/2016] [Indexed: 11/18/2022]  Open
42
Wagoner JA, Dill KA. Molecular Motors: Power Strokes Outperform Brownian Ratchets. J Phys Chem B 2016;120:6327-36. [DOI: 10.1021/acs.jpcb.6b02776] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
43
Multiscale method for modeling binding phenomena involving large objects: application to kinesin motor domains motion along microtubules. Sci Rep 2016;6:23249. [PMID: 26988596 PMCID: PMC4796874 DOI: 10.1038/srep23249] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2015] [Accepted: 03/03/2016] [Indexed: 11/30/2022]  Open
44
Bodmer NK, Theisen KE, Dima RI. Molecular investigations into the mechanics of a muscle anchoring complex. Biophys J 2016;108:2322-32. [PMID: 25954889 DOI: 10.1016/j.bpj.2015.03.036] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2014] [Revised: 02/16/2015] [Accepted: 03/13/2015] [Indexed: 11/15/2022]  Open
45
Nam W, Epureanu BI. Effects of Obstacles on the Dynamics of Kinesins, Including Velocity and Run Length, Predicted by a Model of Two Dimensional Motion. PLoS One 2016;11:e0147676. [PMID: 26808534 PMCID: PMC4726810 DOI: 10.1371/journal.pone.0147676] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2015] [Accepted: 01/06/2016] [Indexed: 02/07/2023]  Open
46
Goldtzvik Y, Zhang Z, Thirumalai D. Importance of Hydrodynamic Interactions in the Stepping Kinetics of Kinesin. J Phys Chem B 2016;120:2071-5. [DOI: 10.1021/acs.jpcb.5b11153] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
47
Chakraborty S, Zheng W. Decrypting the structural, dynamic, and energetic basis of a monomeric kinesin interacting with a tubulin dimer in three ATPase states by all-atom molecular dynamics simulation. Biochemistry 2015;54:859-69. [PMID: 25537000 DOI: 10.1021/bi501056h] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
48
Kononova O, Kholodov Y, Theisen KE, Marx KA, Dima RI, Ataullakhanov FI, Grishchuk EL, Barsegov V. Tubulin bond energies and microtubule biomechanics determined from nanoindentation in silico. J Am Chem Soc 2014;136:17036-45. [PMID: 25389565 PMCID: PMC4277772 DOI: 10.1021/ja506385p] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
49
Modular aspects of kinesin force generation machinery. Biophys J 2013;104:1969-78. [PMID: 23663840 DOI: 10.1016/j.bpj.2013.03.051] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2012] [Revised: 03/04/2013] [Accepted: 03/07/2013] [Indexed: 11/21/2022]  Open
50
Kolomeisky AB. Motor proteins and molecular motors: how to operate machines at the nanoscale. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2013;25:463101. [PMID: 24100357 PMCID: PMC3858839 DOI: 10.1088/0953-8984/25/46/463101] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
PrevPage 1 of 2 12Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA