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Steinbacher SD, Priselac K, Kandler W, Savio D, Vierheilig J, Mayer R, Demeter K, Linke RB, Mach RL, Sommer R, Lindner G, Zuser K, Kolm C, Stevenson ME, Blaschke AP, Kirschner AKT, Leifels M, Farnleitner AH. Seasonally recurring patterns of dominant Crenothrix spp. in a European alluvial drinking water well: Significance and potential indicator role. WATER RESEARCH 2025; 279:123406. [PMID: 40073487 DOI: 10.1016/j.watres.2025.123406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2024] [Revised: 02/25/2025] [Accepted: 02/27/2025] [Indexed: 03/14/2025]
Abstract
Iron and manganese (Fe/Mn) often lead to aesthetic quality issues in water supply. Strong and problematic black-brown particle formation was persistently observed in an alluvial drinking water well, even though oxygen enrichment probes, intended for in situ i.e., subsurface iron/manganese removal, were installed. To investigate the cause of the problem, a comparative and multiparametric approach was undertaken at the problematic well, seven additional wells (with 0.3 to 70 km distance to the affected well) and all the adjacent surface waters. Via a time-series investigation of up to 2.5 years, microbiological analysis (high-throughput 16S rRNA gene amplicon sequencing, total cell count) and chemical analysis (high-resolution elemental analysis using inductively coupled mass spectrometry and others) of the water samples were performed. Results revealed previously unreported, extremely dynamic, and seasonally recurring patterns of genus Crenothrix (a sheathed, filamentous bacterial population) in water samples obtained from the particle-affected well. Crenothrix spp. dominated the microbial community in summer months (up to 82 % relative abundance), being virtually absent in winter. Explanatory models for the high dynamics and association with bio-geochemical processes were established. These included methane formation and manganese mobilization in relation to riverbank filtration in the summer months, as well as changing aerobic and anaerobic conditions in the aquifer. Dominance of Crenothrix spp. in the affected well, low abundance in weak particle-affected wells, and total absence in non-affected wells was observed. This led to the suggestion of Crenothrix spp. as a technical indicator for Fe/Mn treatment failure for alluvial groundwater (e.g., genetic marker quantification by q/dPCR), to be evaluated in future studies regarding their applicability across a broader geographic context. Despite being first described in association with drinking water deterioration 150 years ago, this is the first study reporting seasonally recurring dominant patterns of Crenothrix spp. in association with operational/aesthetic issues for drinking water production.
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Affiliation(s)
- Sophia D Steinbacher
- Division Water Quality and Health, Department of Pharmacology, Physiology, and Microbiology, Karl Landsteiner University of Health Sciences, Dr.-Karl-Dorrek-Straße 30, A-3500 Krems an der Donau, Austria; Institute of Chemical, Environmental and Bioscience Engineering, Microbiology and Molecular Diagnostics E166/5/3, TU Wien, Gumpendorferstraße 1a, A-1060 Vienna, Austria
| | - Katarina Priselac
- Institute of Chemical, Environmental and Bioscience Engineering, Microbiology and Molecular Diagnostics E166/5/3, TU Wien, Gumpendorferstraße 1a, A-1060 Vienna, Austria
| | - Wolfgang Kandler
- University of Natural Resources and Life Sciences Vienna, Department of Agrobiotechnology, IFA-Tulln, Institute of Bioanalytics and Agro-Metabolomics, Konrad-Lorenz-Straße 20, 3430 Tulln an der Donau, Austria
| | - Domenico Savio
- Division Water Quality and Health, Department of Pharmacology, Physiology, and Microbiology, Karl Landsteiner University of Health Sciences, Dr.-Karl-Dorrek-Straße 30, A-3500 Krems an der Donau, Austria
| | - Julia Vierheilig
- Institute of Water Quality and Resource Management E226/1, TU Wien, Lilienthalgasse 21 OD, A-1030 Vienna, Austria
| | - René Mayer
- Division Water Quality and Health, Department of Pharmacology, Physiology, and Microbiology, Karl Landsteiner University of Health Sciences, Dr.-Karl-Dorrek-Straße 30, A-3500 Krems an der Donau, Austria; Institute of Chemical, Environmental and Bioscience Engineering, Microbiology and Molecular Diagnostics E166/5/3, TU Wien, Gumpendorferstraße 1a, A-1060 Vienna, Austria
| | - Katalin Demeter
- Institute of Chemical, Environmental and Bioscience Engineering, Microbiology and Molecular Diagnostics E166/5/3, TU Wien, Gumpendorferstraße 1a, A-1060 Vienna, Austria
| | - Rita B Linke
- Institute of Chemical, Environmental and Bioscience Engineering, Microbiology and Molecular Diagnostics E166/5/3, TU Wien, Gumpendorferstraße 1a, A-1060 Vienna, Austria
| | - Robert L Mach
- Institute of Chemical, Environmental and Bioscience Engineering, Microbiology and Molecular Diagnostics E166/5/3, TU Wien, Gumpendorferstraße 1a, A-1060 Vienna, Austria
| | - Regina Sommer
- Institute for Hygiene and Applied Immunology, Water Hygiene, Medical University of Vienna, Kinderspitalgasse 15, A-1090 Vienna, Austria
| | - Gerhard Lindner
- Institute for Hygiene and Applied Immunology, Water Hygiene, Medical University of Vienna, Kinderspitalgasse 15, A-1090 Vienna, Austria
| | - Karen Zuser
- Division Water Quality and Health, Department of Pharmacology, Physiology, and Microbiology, Karl Landsteiner University of Health Sciences, Dr.-Karl-Dorrek-Straße 30, A-3500 Krems an der Donau, Austria
| | - Claudia Kolm
- Division Water Quality and Health, Department of Pharmacology, Physiology, and Microbiology, Karl Landsteiner University of Health Sciences, Dr.-Karl-Dorrek-Straße 30, A-3500 Krems an der Donau, Austria
| | - Margaret E Stevenson
- Institute of Hydraulic Engineering and Water Resources Management E222/02, TU Wien, Karlsplatz 13/222, A-1040 Vienna, Austria
| | - Alfred P Blaschke
- Institute of Hydraulic Engineering and Water Resources Management E222/02, TU Wien, Karlsplatz 13/222, A-1040 Vienna, Austria
| | - Alexander K T Kirschner
- Division Water Quality and Health, Department of Pharmacology, Physiology, and Microbiology, Karl Landsteiner University of Health Sciences, Dr.-Karl-Dorrek-Straße 30, A-3500 Krems an der Donau, Austria; Institute for Hygiene and Applied Immunology, Water Microbiology, Medical University of Vienna, Kinderspitalgasse 15, A-1090 Vienna, Austria.
| | - Mats Leifels
- Division Water Quality and Health, Department of Pharmacology, Physiology, and Microbiology, Karl Landsteiner University of Health Sciences, Dr.-Karl-Dorrek-Straße 30, A-3500 Krems an der Donau, Austria
| | - Andreas H Farnleitner
- Division Water Quality and Health, Department of Pharmacology, Physiology, and Microbiology, Karl Landsteiner University of Health Sciences, Dr.-Karl-Dorrek-Straße 30, A-3500 Krems an der Donau, Austria; Institute of Chemical, Environmental and Bioscience Engineering, Microbiology and Molecular Diagnostics E166/5/3, TU Wien, Gumpendorferstraße 1a, A-1060 Vienna, Austria.
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2
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Jiang H, Xie X, Li J, Jiang Z, Pi K, Wang Y. Metagenomic and FT-ICR MS insights into the mechanism for the arsenic biogeochemical cycling in groundwater. JOURNAL OF HAZARDOUS MATERIALS 2024; 476:135047. [PMID: 38959833 DOI: 10.1016/j.jhazmat.2024.135047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2024] [Revised: 06/07/2024] [Accepted: 06/25/2024] [Indexed: 07/05/2024]
Abstract
Arsenic (As) is a groundwater contaminant of global concern. The degradation of dissolved organic matter (DOM) can provide a reducing environment for As release. However, the interaction of DOM with local microbial communities and how different sources and types of DOM influence the biotransformation of As in aquifers is uncertain. This study used optical spectroscopy, Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS), metagenomics, and structural equation modeling (SEM) to demonstrate the how the biotransformation of As in aquifers is promoted. The results indicated that the DOM in high-As groundwater is dominated by highly unsaturated low-oxygen(O) compounds that are quite humic and stable. Metagenomics analysis indicated Acinetobacter, Pseudoxanthomonas, and Pseudomonas predominate in high-As environments; these genera all contain As detoxification genes and are members of the same phylum (Proteobacteria). SEM analyses indicated the presence of Proteobacteria is positively related to highly unsaturated low-O compounds in the groundwater and conditions that promote arsenite release. The results illustrate how the biogeochemical transformation of As in groundwater systems is affected by DOM from different sources and with different characteristics.
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Affiliation(s)
- Honglin Jiang
- School of Environmental Studies, China University of Geosciences, Wuhan 430074, China
| | - Xianjun Xie
- School of Environmental Studies, China University of Geosciences, Wuhan 430074, China; State Environmental Protection Key Laboratory of Source Apportionment and Control of Aquatic Pollution, China University of Geosciences, Wuhan 430078, China.
| | - Junxia Li
- School of Environmental Studies, China University of Geosciences, Wuhan 430074, China; State Environmental Protection Key Laboratory of Source Apportionment and Control of Aquatic Pollution, China University of Geosciences, Wuhan 430078, China
| | - Zhou Jiang
- School of Environmental Studies, China University of Geosciences, Wuhan 430074, China
| | - Kunfu Pi
- School of Environmental Studies, China University of Geosciences, Wuhan 430074, China; State Environmental Protection Key Laboratory of Source Apportionment and Control of Aquatic Pollution, China University of Geosciences, Wuhan 430078, China
| | - Yanxin Wang
- School of Environmental Studies, China University of Geosciences, Wuhan 430074, China; State Environmental Protection Key Laboratory of Source Apportionment and Control of Aquatic Pollution, China University of Geosciences, Wuhan 430078, China
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3
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Xu F, Li P. Biogeochemical mechanisms of iron (Fe) and manganese (Mn) in groundwater and soil profiles in the Zhongning section of the Weining Plain (northwest China). THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 939:173506. [PMID: 38815819 DOI: 10.1016/j.scitotenv.2024.173506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Revised: 05/18/2024] [Accepted: 05/23/2024] [Indexed: 06/01/2024]
Abstract
High levels of Iron (Fe) and manganese (Mn) in soils may contribute to secondary contamination of groundwater. However, there is limited understanding of the cycling mechanisms of Fe and Mn in groundwater and soil. This study aimed to investigate the biogeochemical processes constituting the Fe and Mn cycle by combining hydrochemistry, sequential extraction and microbiological techniques. The results indicated a similar vertical distribution pattern of Fe and Mn, with lower levels of the effective form (EFC-Fe/Mn) observed at the oxygenated surface, increasing near the groundwater table and decreasing below it. Generally, there was a tendency for accumulation above the water table, with Mn exhibiting a higher release potential compared to Fe. Iron‑manganese oxides (Ox-Fe/Mn) dominated the effective forms, with Fe and Mn in the soil entering groundwater through the reduction dissolution of Ox-Fe/Mn and the oxidative degradation of organic matter or sulfide (OM-Fe/Mn). Correlation analysis revealed that Fe and Mn tend to accumulate in media with fine particles and high organic carbon (TOC) contents. 16S rRNA sequencing analysis disclosed significant variation in the abundance of microorganisms associated with Fe and Mn transformations among unsaturated zone soils, saturated zone media and groundwater, with Fe/Mn content exerting an influence on microbial communities. Furthermore, functional bacterial identification results from the FAPROTAX database show a higher abundance of iron-oxidizing bacteria (9.3 %) in groundwater, while iron and manganese-reducing bacteria are scarce in both groundwater and soil environments. Finally, a conceptual model of Fe and Mn cycling was constructed, elucidating the biogeochemical processes in groundwater and soil environments. This study provides a new perspective for a deeper understanding of the environmental fate of Fe and Mn, which is crucial for mitigating Fe and Mn pollution in groundwater.
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Affiliation(s)
- Fei Xu
- School of Water and Environment, Chang'an University, No. 126 Yanta Road, Xi'an 710054, Shaanxi, China; Key Laboratory of Subsurface Hydrology and Ecological Effects in Arid Region of the Ministry of Education, Chang'an University, No. 126 Yanta Road, Xi'an 710054, Shaanxi, China; Key Laboratory of Eco-hydrology and Water Security in Arid and Semi-arid Regions of the Ministry of Water Resources, Chang'an University, No. 126 Yanta Road, Xi'an 710054, Shaanxi, China
| | - Peiyue Li
- School of Water and Environment, Chang'an University, No. 126 Yanta Road, Xi'an 710054, Shaanxi, China; Key Laboratory of Subsurface Hydrology and Ecological Effects in Arid Region of the Ministry of Education, Chang'an University, No. 126 Yanta Road, Xi'an 710054, Shaanxi, China; Key Laboratory of Eco-hydrology and Water Security in Arid and Semi-arid Regions of the Ministry of Water Resources, Chang'an University, No. 126 Yanta Road, Xi'an 710054, Shaanxi, China.
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4
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Shi M, Yang Y, Wu Y, Wang Q, Gao L, Lu Y. Mechanisms of well iron clogging in groundwater heat pump systems: Insights from video imaging, hydrogeochemical analysis, and geochemical modeling. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 365:121535. [PMID: 38917542 DOI: 10.1016/j.jenvman.2024.121535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Revised: 06/11/2024] [Accepted: 06/17/2024] [Indexed: 06/27/2024]
Abstract
Groundwater heat pump (GWHP) systems are increasingly popular as low-carbon and environmentally friendly technologies, but well clogging induced by iron remains a significant issue. This study investigated the clogging characteristics and biogeochemistry of three typical wells (pumping, injection, and observation wells) in an operating GWHP system using video imaging, sampling, and analysis of hydrogeochemical and microbial data. The results revealed that iron-induced well clogging is a complex process involving physical, chemical, and microbial factors. Pumping wells experience clogging due to water mixing with varying redox conditions, resulting in hematite-based iron oxide deposits. Injection wells exhibit higher clogging severity, with transformed oxidation and accumulation of reduced iron minerals at the solid-liquid interface, resulting in darker colored clogs with magnetite. Clogging in both extraction and injection wells is closely related to iron-rich aquifer sections, where severe clogging occurs. Shallow clogging due to iron oxide is limited and attributed to the oxidation of zero-valent iron in well casing material. Iron-oxidizing bacteria and iron-reducing bacteria were detected in the consolidated deposits of clogged wells, indicating their involvement in the clogging formation process. Moreover, a strong correlation was observed between the presence of nitrate-reducing bacteria in the water phase and the severity of clogging, suggesting a possible link between iron oxidation and nitrate reduction in the system. Geochemical modeling results further supported the observed clogging severity in GWHP systems and confirmed varying clogging mechanisms in different wells and depths. These findings contribute to the understanding of clogging in GWHP operations, aiding in robust water utilization and energy-saving efforts, and supporting global carbon reduction initiatives.
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Affiliation(s)
- Min Shi
- Key Laboratory of Groundwater Resources and Environment (Jilin University), Ministry of Education, Changchun, 130021, PR China; Jilin Provincial Key Laboratory of Water Resources and Environment, Jilin University, Changchun, 130021, PR China.
| | - Yuesuo Yang
- Key Laboratory of Groundwater Resources and Environment (Jilin University), Ministry of Education, Changchun, 130021, PR China; Jilin Provincial Key Laboratory of Water Resources and Environment, Jilin University, Changchun, 130021, PR China.
| | - Yuhui Wu
- Guangdong Engineering Technology Research Center of Heavy Metal Pollution Control and Restoration in Farmland Soil. South China Institute of Environmental Sciences, MEE, Guangzhou, 510535, PR China.
| | - Qiandan Wang
- Key Laboratory of Groundwater Resources and Environment (Jilin University), Ministry of Education, Changchun, 130021, PR China; Jilin Provincial Key Laboratory of Water Resources and Environment, Jilin University, Changchun, 130021, PR China.
| | - Lei Gao
- Commonwealth Scientific and Industrial Research Organisation (CSIRO), Waite Campus, Urrbrae, SA 5064, Australia.
| | - Ying Lu
- Key Laboratory of Groundwater Resources and Environment (Jilin University), Ministry of Education, Changchun, 130021, PR China; Jilin Provincial Key Laboratory of Water Resources and Environment, Jilin University, Changchun, 130021, PR China.
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5
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Lopez-Fernandez M, Westmeijer G, Turner S, Broman E, Ståhle M, Bertilsson S, Dopson M. Thiobacillus as a key player for biofilm formation in oligotrophic groundwaters of the Fennoscandian Shield. NPJ Biofilms Microbiomes 2023; 9:41. [PMID: 37349512 DOI: 10.1038/s41522-023-00408-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2021] [Accepted: 06/09/2023] [Indexed: 06/24/2023] Open
Abstract
Biofilm formation is a common adaptation for microbes in energy-limited conditions such as those prevalent in the vast deep terrestrial biosphere. However, due to the low biomass and the inaccessible nature of subsurface groundwaters, the microbial populations and genes involved in its formation are understudied. Here, a flow-cell system was designed to investigate biofilm formation under in situ conditions in two groundwaters of contrasting age and geochemistry at the Äspö Hard Rock Laboratory, Sweden. Metatranscriptomes showed Thiobacillus, Sideroxydans, and Desulforegula to be abundant and together accounted for 31% of the transcripts in the biofilm communities. Differential expression analysis highlighted Thiobacillus to have a principal role in biofilm formation in these oligotrophic groundwaters by being involved in relevant processes such as the formation of extracellular matrix, quorum sensing, and cell motility. The findings revealed an active biofilm community with sulfur cycling as a prominent mode of energy conservation in the deep biosphere.
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Affiliation(s)
- Margarita Lopez-Fernandez
- Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Stuvaregatan 4, 392 31, Kalmar, Sweden.
- Department of Microbiology, Faculty of Sciences, University of Granada, Avenida Fuentenueva s/n, 18071, Granada, Spain.
| | - George Westmeijer
- Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Stuvaregatan 4, 392 31, Kalmar, Sweden
| | - Stephanie Turner
- Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Stuvaregatan 4, 392 31, Kalmar, Sweden
- Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Box 7026, 75007, Uppsala, Sweden
| | - Elias Broman
- Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Stuvaregatan 4, 392 31, Kalmar, Sweden
- Department of Ecology, Environment and Plant Sciences, Stockholm University, Svante Arrhenius väg 20 A, 106 91, Stockholm, Sweden
| | - Magnus Ståhle
- Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Stuvaregatan 4, 392 31, Kalmar, Sweden
| | - Stefan Bertilsson
- Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, Box 7050, SE75007, Uppsala, Sweden
| | - Mark Dopson
- Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Stuvaregatan 4, 392 31, Kalmar, Sweden
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6
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Nguyen AH, Oh S. Effect of antibiotic cocktail exposure on functional disturbance of nitrifying microbiome. JOURNAL OF HAZARDOUS MATERIALS 2023; 455:131571. [PMID: 37178533 DOI: 10.1016/j.jhazmat.2023.131571] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 03/17/2023] [Accepted: 05/02/2023] [Indexed: 05/15/2023]
Abstract
The present study quantitatively determined the degree and type of functional disturbance in the nitrifying microbiome caused by exposure to a single oxytetracycline (OTC) and a two-antibiotic mixture containing OTC and sulfamethoxazole (SMX). While the single antibiotic had a pulsed disturbance on nitritation that was recoverable within three weeks, the antibiotic mixture caused a more significant pulsed disturbance on nitritation and a potential press disturbance on nitratation that was not recoverable for over five months. Bioinformatic analysis revealed significant perturbations for both canonical nitrite-oxidizing (Nitrospira defluvii) and potential complete ammonium-oxidizing (Ca. Nitrospira nitrificans) populations that were strongly associated with the press perturbation on nitratation. In addition to this functional disturbance, the antibiotic mixture reduced the biosorption of OTC and altered its biotransformation pathways, resulting in different transformation products compared with those produced when OTC was treated as a single antibiotic. Collectively, this work elucidated how the antibiotic mixture can affect the degree, type, and duration of the functional disturbance on nitrifying microbiome and offer new insights into the environmental consequences of antibiotic residues (e.g., their fate, transformation, and ecotoxicity) when present as an antibiotic mixture rather than single antibiotics.
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Affiliation(s)
- Anh H Nguyen
- Department of Civil Engineering, Kyung Hee University, Yongin-si, Gyeonggi-do, Republic of Korea
| | - Seungdae Oh
- Department of Civil Engineering, Kyung Hee University, Yongin-si, Gyeonggi-do, Republic of Korea.
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Lyons KJ, Ikonen J, Hokajärvi AM, Räsänen T, Pitkänen T, Kauppinen A, Kujala K, Rossi PM, Miettinen IT. Monitoring groundwater quality with real-time data, stable water isotopes, and microbial community analysis: A comparison with conventional methods. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 864:161199. [PMID: 36581300 DOI: 10.1016/j.scitotenv.2022.161199] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 12/20/2022] [Accepted: 12/22/2022] [Indexed: 06/17/2023]
Abstract
Groundwater provides much of the world's potable water. Nevertheless, groundwater quality monitoring programmes often rely on a sporadic, slow, and narrowly focused combination of periodic manual sampling and laboratory analyses, such that some water quality deficiencies go undetected, or are detected too late to prevent adverse consequences. In an effort to address this shortcoming, we conducted enhanced monitoring of untreated groundwater quality over 12 months (February 2019-February 2020) in four shallow wells supplying potable water in Finland. We supplemented periodic manual sampling and laboratory analyses with (i) real-time online monitoring of physicochemical and hydrological parameters, (ii) analysis of stable water isotopes from groundwater and nearby surface waters, and (iii) microbial community analysis of groundwater via amplicon sequencing of the 16S rRNA gene and 16S rRNA. We also developed an early warning system (EWS) for detecting water quality anomalies by automating real-time online monitoring data collection, transfer, and analysis - using electrical conductivity (EC) and turbidity as indirect water quality indicators. Real-time online monitoring measurements were largely in fair agreement with periodic manual measurements, demonstrating their usefulness for monitoring water quality; and the findings of conventional monitoring, stable water isotopes, and microbial community analysis revealed indications of surface water intrusion and faecal contamination at some of the studied sites. With further advances in technology and affordability expected into the future, the supplementary methods used here could be more widely implemented to enhance groundwater quality monitoring - by contributing new insights and/or corroborating the findings of conventional analyses.
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Affiliation(s)
- Kevin J Lyons
- Water, Energy and Environmental Engineering Research Unit, University of Oulu, Oulu, Finland.
| | - Jenni Ikonen
- Expert Microbiology Unit, Finnish Institute for Health and Welfare, Kuopio, Finland
| | - Anna-Maria Hokajärvi
- Expert Microbiology Unit, Finnish Institute for Health and Welfare, Kuopio, Finland
| | - Teemu Räsänen
- Preventos Informatics Oy, Kuopio, Finland; Department of Environmental Technology, Savonia University of Applied Sciences, Kuopio, Finland
| | - Tarja Pitkänen
- Expert Microbiology Unit, Finnish Institute for Health and Welfare, Kuopio, Finland; Department of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki, Helsinki, Finland
| | - Ari Kauppinen
- Expert Microbiology Unit, Finnish Institute for Health and Welfare, Kuopio, Finland; Animal Health Diagnostic Unit, Laboratory and Research Division, Finnish Food Authority, Helsinki, Finland
| | - Katharina Kujala
- Water, Energy and Environmental Engineering Research Unit, University of Oulu, Oulu, Finland
| | - Pekka M Rossi
- Water, Energy and Environmental Engineering Research Unit, University of Oulu, Oulu, Finland
| | - Ilkka T Miettinen
- Expert Microbiology Unit, Finnish Institute for Health and Welfare, Kuopio, Finland
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8
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J Barnett M, J Farr G, Shen J, Gregory S. Groundwater Microbiology of an Urban Open-Loop Ground Source Heat Pump with High Methane. GROUND WATER 2023; 61:274-287. [PMID: 36645287 DOI: 10.1111/gwat.13291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2022] [Revised: 01/12/2023] [Accepted: 01/13/2023] [Indexed: 06/17/2023]
Abstract
Ground source heat pumps (GSHPs) are low-carbon alternatives to gas boilers for decarbonizing heating. Open-loop GSHP systems abstract groundwater, pass it through a heat exchanger, and return it to ground or surface water. Groundwater samples from the top and base of an abstraction and a recharge borehole of an open-loop GSHP system in Cardiff, UK were assessed, and compared to two local boreholes in the same aquifer. Groundwater samples were taken when the GSHP system was active (once) and inactive (twice) and analyzed for changes in geochemistry, viable cell counts, and microbial community (16S rRNA gene sequencing). The GSHP had a distinct geochemistry and microbial community compared to the control boreholes, and the abstraction borehole showed greater variability than the recharge borehole. The microbial community of the GSHP system showed an increase in relative abundance of genera involved in oxidation of methane and methylated compounds, of which Methylotenera was the most abundant (up to 83.9% of 16S rRNA gene sequences). There were also changes in genera associated with nitrification (Nitrospira, Nitrosomonas) and those with potential for sulfur and iron cycling (Rhodoferax). Methane concentration was analyzed after identification of methylotrophs and found that methane concentrations were up to 2855 μg L-1 , thus likely having had a significant impact on the bacterial communities present. Understanding the microbiology and biogeochemistry of GSHP systems provides insight into potential issues with local infrastructure and long-term system performance, and supports modeling to maximize efficient and sustainable use of the subsurface.
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Affiliation(s)
| | - Gareth J Farr
- British Geological Survey, Cardiff University, Park Place, Cardiff, CF10 3AT, UK
| | - Jianxun Shen
- School of Earth and Environmental Sciences and Centre for Exoplanet Science, University of St Andrews, St Andrews, KY16 9AL, UK
| | - Simon Gregory
- British Geological Survey, Keyworth, Nicker Hill, Nottingham, NG12 5GG, UK
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9
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Shen J, Liu H, Zhou H, Chen R. Specific characteristics of the microbial community in the groundwater fluctuation zone. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:76066-76077. [PMID: 35665458 DOI: 10.1007/s11356-022-21166-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 05/25/2022] [Indexed: 06/15/2023]
Abstract
Groundwater level fluctuation is a common natural phenomenon that causes alternate changes in oxygen, moisture, and biogeochemical processes in sediments. Microbes are sensitive to these environmental changes. Therefore, a specific microbial community is proposed to form in the groundwater fluctuation zone (GFZ). The vertical distributions of microbial abundance, diversity, and functional microbes and genes in sediment profiles were investigated, focusing on the GFZ, using high-throughput 16S rRNA gene sequencing, qPCR, and the Functional Annotation of Prokaryotic Taxa (FAPROTAX) approach. The relationships between chemical variables and microbial community structure were investigated by redundancy analysis (RDA). Results showed that the microbial abundance and microbial community richness and diversity were higher in the sediments of the GFZ. The nitrate reducers prefer to stay just below the groundwater level in the GFZ. The predominant microbes in the GFZ functioned as nitrifiers and Fe-oxidizers. The specific community in the GFZ is mainly related to NO3- and Fe(III) in the sediment. Consequently, the biochemical processes nitrification and Fe- and Mn-oxidation sequentially happen above the nitrate-reduction zone near the groundwater level in the GFZ. These results provide new knowledge in the biogeochemistry cycle of the GFZ and its disturbance on the vertical distribution and transport of biogenic elements and contaminants.
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Affiliation(s)
- Junhao Shen
- School of Environmental Studies, China University of Geosciences, Wuhan, 430074, People's Republic of China
| | - Hui Liu
- School of Environmental Studies, China University of Geosciences, Wuhan, 430074, People's Republic of China.
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, 430074, People's Republic of China.
| | - Huazhong Zhou
- Plant Protection Station of Hubei Province, Wuhan, 430070, People's Republic of China
| | - Rong Chen
- School of Environmental Studies, China University of Geosciences, Wuhan, 430074, People's Republic of China
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10
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Beker SA, Khudur LS, Krohn C, Cole I, Ball AS. Remediation of groundwater contaminated with dye using carbon dots technology: Ecotoxicological and microbial community responses. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 319:115634. [PMID: 35803070 DOI: 10.1016/j.jenvman.2022.115634] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 06/23/2022] [Accepted: 06/26/2022] [Indexed: 06/15/2023]
Abstract
Groundwater pollution poses a serious threat to the main source of clean water globally. Nanoparticles have the potential for remediation of polluted aquifers; however, environmental safety concerns associated with in situ deployments of such technology include potential detrimental effects on microorganisms in terms of toxicity and functional disruptions. In this work, we evaluated a new and ecofriendly approach using carbon dots (CDs) as Fenton-like catalysts to catalyse the degradation of dye-containing groundwater samples. This investigation aimed at evaluating the efficacy of a novel remediation technology in terms of dye degradation and toxicity reduction while assessing its impacts on aquatic microorganisms. Uncontaminated Australian groundwater samples were spiked with methylene blue and incubated in the dark, at 18 °C, under slow agitation, using CDs at 0.5 mg mL-1 and H2O2 at 73.5 mM for 25 h. The dye degradation rate was determined as well as the toxicity of the treated solutions using the Microtox® bioassay. Further, to determine the changes in the groundwater microbial community, 16 S rRNA sequencing was used and evenness and diversity indices were analysed using Pielou's evenness and Simpson index, respectively. This study revealed that dye-containing groundwater were effectively treated by CDs showing a degradation rate of 78-82% and a significant 4-fold reduction in the toxicity. Characterisation of the groundwater microbiota revealed a predominance of at least 60% Proteobacteria phylum in all samples where diversity and evenness were maintained throughout the remediation process. The results showed that CDs could be an efficient approach to treat polluted groundwater and potentially have minimum impact on the environmental microbiome.
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Affiliation(s)
- Sabrina A Beker
- School of Science, RMIT University, Bundoora, VIC, 3083, Australia.
| | - Leadin S Khudur
- School of Science, RMIT University, Bundoora, VIC, 3083, Australia
| | - Christian Krohn
- School of Science, RMIT University, Bundoora, VIC, 3083, Australia
| | - Ivan Cole
- Advanced Manufacturing and Fabrication, School of Engineering, RMIT University, Melbourne, VIC, 3000, Australia
| | - Andrew S Ball
- School of Science, RMIT University, Bundoora, VIC, 3083, Australia
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11
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Chakraborty A, Suchy M, Hubert CRJ, Ryan MC. Vertical stratification of microbial communities and isotope geochemistry tie groundwater denitrification to sampling location within a nitrate-contaminated aquifer. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 820:153092. [PMID: 35038526 DOI: 10.1016/j.scitotenv.2022.153092] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 12/29/2021] [Accepted: 01/09/2022] [Indexed: 06/14/2023]
Abstract
Nitrate pollution is a major threat to groundwater quality in agricultural areas. Natural attenuation of nitrate in contaminated aquifers is mediated by denitrifying microbial populations in anoxic environments. Vertical distribution of denitrifying microbial communities in aquifers is greatly influenced by groundwater redox conditions, local hydrogeological parameters, and seasonal variability in groundwater flow and recharge. In this study, we investigated groundwater geochemistry and the composition of bacterial and archaeal communities with increasing depth in a shallow nitrate-contaminated aquifer in British Columbia, Canada. High-resolution passive diffusion sampling was conducted to collect groundwater at 10-cm intervals from 4 to 20 m below ground surface (mbgs) in the aquifer. Geochemical analyses of major ions indicated a general shift in the groundwater chemistry below 16 mbgs including decreasing chloride concentrations that suggest two-end member mixing of shallow and deep groundwater with different chemistries. A redoxcline was further observed within a 2 m transition zone at 18-20 mbgs characterized by sharp declines in nitrate concentrations and increases in sulfate and total inorganic carbon. Excursions in δ15N-NO3- and δ18O-NO3- in the same depth interval are consistent with denitrification, and a concomitant decrease in δ34S-SO42- suggested that denitrification was coupled to sulfide or sulfur oxidation. Microbial communities within this depth interval were significantly dissimilar to those above and below, featuring putative lithotrophic denitrifying bacteria belonging to the genera Sulfurifustis, Sulfuritalea and Sulfuricella. These lineages were detected in greatest abundance at 19 mbgs while the abundances of putative heterotrophic sulfate-reducing bacteria belonging to the genus Desulfosporosinus were greatest at 20 mbgs. In addition to help distinguish denitrification from mixing-induced changes in groundwater chemistry, the above observed vertical stratification of the microbial key players connects nitrate removal to the locations of the aquifer sampled.
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Affiliation(s)
- Anirban Chakraborty
- Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.
| | - Martin Suchy
- Environment and Climate Change Canada, Vancouver, British Columbia, Canada
| | - Casey R J Hubert
- Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada
| | - M Cathryn Ryan
- Department of Geoscience, University of Calgary, Calgary, Alberta, Canada
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12
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Aldas-Vargas A, Hauptfeld E, Hermes GDA, Atashgahi S, Smidt H, Rijnaarts HHM, Sutton NB. Selective pressure on microbial communities in a drinking water aquifer - Geochemical parameters vs. micropollutants. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 299:118807. [PMID: 35007672 DOI: 10.1016/j.envpol.2022.118807] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Revised: 11/26/2021] [Accepted: 01/05/2022] [Indexed: 06/14/2023]
Abstract
Groundwater quality is crucial for drinking water production, but groundwater resources are increasingly threatened by contamination with pesticides. As pesticides often occur at micropollutant concentrations, they are unattractive carbon sources for microorganisms and typically remain recalcitrant. Exploring microbial communities in aquifers used for drinking water production is an essential first step towards understanding the fate of micropollutants in groundwater. In this study, we investigated the interaction between groundwater geochemistry, pesticide presence, and microbial communities in an aquifer used for drinking water production. Two groundwater monitoring wells in The Netherlands were sampled in 2014, 2015, and 2016. In both wells, water was sampled from five discrete depths ranging from 13 to 54 m and was analyzed for geochemical parameters, pesticide concentrations and microbial community composition using 16S rRNA gene sequencing and qPCR. Groundwater geochemistry was stable throughout the study period and pesticides were heterogeneously distributed at low concentrations (μg L-1 range). Microbial community composition was also stable throughout the sampling period. Integration of a unique dataset of chemical and microbial data showed that geochemical parameters and to a lesser extent pesticides exerted selective pressure on microbial communities. Microbial communities in both wells showed similar composition in the deeper aquifer, where pumping results in horizontal flow. This study provides insight into groundwater parameters that shape microbial community composition. This information can contribute to the future implementation of remediation technologies to guarantee safe drinking water production.
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Affiliation(s)
- Andrea Aldas-Vargas
- Environmental Technology, Wageningen University & Research, P.O. Box 17, 6700, EV Wageningen, the Netherlands
| | - Ernestina Hauptfeld
- Environmental Technology, Wageningen University & Research, P.O. Box 17, 6700, EV Wageningen, the Netherlands; Laboratory of Microbiology, Wageningen University & Research, P.O. Box 8033, 6700, EH Wageningen, the Netherlands
| | - Gerben D A Hermes
- Laboratory of Microbiology, Wageningen University & Research, P.O. Box 8033, 6700, EH Wageningen, the Netherlands
| | - Siavash Atashgahi
- Laboratory of Microbiology, Wageningen University & Research, P.O. Box 8033, 6700, EH Wageningen, the Netherlands
| | - Hauke Smidt
- Laboratory of Microbiology, Wageningen University & Research, P.O. Box 8033, 6700, EH Wageningen, the Netherlands
| | - Huub H M Rijnaarts
- Environmental Technology, Wageningen University & Research, P.O. Box 17, 6700, EV Wageningen, the Netherlands
| | - Nora B Sutton
- Environmental Technology, Wageningen University & Research, P.O. Box 17, 6700, EV Wageningen, the Netherlands.
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13
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Song X, Wang Q, Jin P, Chen X, Tang S, Wei C, Li K, Ding X, Tang Z, Fu H. Enhanced biostimulation coupled with a dynamic groundwater recirculation system for Cr(VI) removal from groundwater: A field-scale study. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 772:145495. [PMID: 33770851 DOI: 10.1016/j.scitotenv.2021.145495] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Revised: 01/24/2021] [Accepted: 01/25/2021] [Indexed: 06/12/2023]
Abstract
A large gap exists between laboratory findings and successful implementation of bioremediation technologies for the treatment of chromium (Cr)-contaminated sites. This work conducted the enhanced bioremediation of Cr(VI) in situ via the addition of organic carbon (ethanol) coupled with a dynamic groundwater recirculation (DGR)-based system in a field-scale study. The DGR system was applied to successfully (1) remove Cr(VI) from groundwater via enhanced flushing by the recirculation system and (2) deliver the biostimulant to the heterogeneous subsurface environment, including a sand/cobble aquifer and a fractured bedrock aquifer. The results showed that the combined extraction and bioreduction of Cr(VI) were able to reduce Cr(VI) concentrations from 1000 to 2000 mg/L to below the clean-up goal of 0.1 mg/L within the operation period of 52 days. The effectiveness of Cr(VI) bioremediation and the relationship between microbial communities and geochemical parameters were evaluated. Multiple-line of evidence demonstrated that the introduction of ethanol significantly stimulated a variety of bacteria, including those responsible for denitrification, sulfate reduction and reduction of Cr(VI), which contributed to the establishment of reducing conditions in both aquifers. Cr(VI) was removed from groundwater via combined mechanisms of physical removal through the DGR system and the bioreduction of Cr(VI) followed by precipitation. In particular, it was found competitive growth among Cr(VI)-reducing bacteria (such as the enrichment of Geobacter, along with the reduced relative abundance of Acinetobacter and Pseudomonas) was induced by ethanol injection. Furthermore, Cr(VI), total organic carbon, NO2-, and SO42- played important roles in shaping the composition of the microbial community and its functions.
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Affiliation(s)
- Xin Song
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Qing Wang
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China.
| | - Peng Jin
- EPCR Innovation and Technology LLC, PA 19406, USA
| | - Xing Chen
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Shiyue Tang
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Changlong Wei
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Kang Li
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Xiaoyan Ding
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhiwen Tang
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Heng Fu
- Nanjing Kangdi Environmental Protection Technology Co., LTD, Nanjing 21000, China
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14
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Wang S, Hou W, Jiang H, Huang L, Dong H, Chen S, Wang B, Chen Y, Lin B, Deng Y. Microbial diversity accumulates in a downstream direction in the Three Gorges Reservoir. J Environ Sci (China) 2021; 101:156-167. [PMID: 33334511 DOI: 10.1016/j.jes.2020.08.006] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2020] [Revised: 08/04/2020] [Accepted: 08/07/2020] [Indexed: 06/12/2023]
Abstract
Organic and inorganic materials migrate downstream and have important roles in regulating environmental health in the river networks. However, it remains unclear whether and how a mixture of materials (i.e., microbial species) from various upstream habitats contribute to microbial community coalescence upstream of a dam. Here we track the spatial variation in microbial abundance and diversity in the Three Gorges Reservoir based on quantitative PCR and 16S rRNA gene high-throughput sequencing data. We further quantitatively assess the relative contributions of microbial species from mainstem, its tributaries, and the surrounding riverbank soils to the area immediately upstream of the Three Gorges Dam (TGD). We found an increase of microbial diversity and the convergent microbial distribution pattern in areas immediately upstream of TGD, suggesting this area become a new confluence for microbial diversity immigrating from upstream. Indeed, the number of shared species increased from upstream to TGD but unique species decreased, indicating immigration of various sources of microbial species overwhelms local environmental conditions in structuring microbial community close to TGD. By quantifying the sources of microbial species close to TGD, we found little contribution from soils as compared to tributaries, especially for sites closer to TGD, suggesting tributary microbes have greater influence on microbial diversity and environmental health in the Three Gorges Reservoir. Collectively, our results suggest that tracking microbial geographic origin and evaluating accumulating effects of microbial diversity shed light on the ecological processes in microbial communities and provide information for regulating aquatic ecological health.
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Affiliation(s)
- Shang Wang
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Weiguo Hou
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing 100083, China
| | - Hongchen Jiang
- School of Ocean Sciences, China University of Geosciences, Beijing 100083, China
| | - Liuqin Huang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China
| | - Hailiang Dong
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing 100083, China; Department of Geology and Environmental Earth Science, Miami University, Oxford, OH 45056, USA
| | - Shu Chen
- School of Environment and Resource, Southwest University of Science and Technology, Sichuan 621010, China.
| | - Bin Wang
- School of Environment and Resource, Southwest University of Science and Technology, Sichuan 621010, China
| | - Yongcan Chen
- School of Environment and Resource, Southwest University of Science and Technology, Sichuan 621010, China
| | - Binliang Lin
- Department of Hydraulic Engineering, Tsinghua University, Beijing 100084, China
| | - Ye Deng
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China.
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15
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Chik AHS, Emelko MB, Anderson WB, O'Sullivan KE, Savio D, Farnleitner AH, Blaschke AP, Schijven JF. Evaluation of groundwater bacterial community composition to inform waterborne pathogen vulnerability assessments. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 743:140472. [PMID: 32758810 DOI: 10.1016/j.scitotenv.2020.140472] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Revised: 06/05/2020] [Accepted: 06/22/2020] [Indexed: 06/11/2023]
Abstract
Microbial water quality evaluations are essential for determining the vulnerability of subsurface drinking water sources to fecal pathogen intrusion. Rather than directly monitor waterborne pathogens using culture- or enumeration-based techniques, the potential of assessing bacterial community using 16S rRNA gene amplicon sequencing to support these evaluations was investigated. A framework for analyzing 16S rRNA gene amplicon sequencing results featuring negative-binomial generalized linear models is demonstrated, and applied to bacterial taxa sequences in purge water samples collected from a shallow, highly aerobic, unconfined aquifer. Bacterial taxa relevant as indicators of fecal source and surface connectivity were examined using this approach. Observed sequences of Escherichia, a genus suggestive of fecal source, were consistently detected but not confirmed by culture-based methods. On the other hand, episodic appearance of anaerobic taxa sequences in this highly aerobic environment, namely Clostridia and Bacteroides, warrants further investigation as potential indicators of fecal contamination. Betaproteobacteria sequences varied significantly on a seasonal basis, and therefore may be linked to understanding surface-water groundwater interactions at this site. However, sequences that are often encountered in surface water bodies (Cyanobacteria and Flavobacteriia) were notably absent or present at very low levels, suggesting that microbial transport from surface-derived sources may be rather limited. This work demonstrates the utility of 16S rRNA gene amplicon sequencing for contextualizing and complementing conventional microbial techniques, allowing for hypotheses about source and transport processes to be tested and refined.
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Affiliation(s)
- Alex H S Chik
- Utrecht University, Domplein 29, 3512 JE Utrecht, Netherlands; TU Wien, Karlsplatz 13, 1040 Vienna, Austria; University of Waterloo, 200 University Ave. W., Waterloo, Ontario N2L 3G1, Canada.
| | - Monica B Emelko
- University of Waterloo, 200 University Ave. W., Waterloo, Ontario N2L 3G1, Canada
| | - William B Anderson
- University of Waterloo, 200 University Ave. W., Waterloo, Ontario N2L 3G1, Canada
| | - Kaitlyn E O'Sullivan
- University of Waterloo, 200 University Ave. W., Waterloo, Ontario N2L 3G1, Canada
| | - Domenico Savio
- Karl Landsteiner University of Health Sciences, Dr.-Karl-Dorrek-Straße 30, 3500 Krems an der Donau, Austria; TU Wien, Gumpendorfer Straße 1a, 1060 Vienna, Austria.
| | - Andreas H Farnleitner
- Karl Landsteiner University of Health Sciences, Dr.-Karl-Dorrek-Straße 30, 3500 Krems an der Donau, Austria; TU Wien, Gumpendorfer Straße 1a, 1060 Vienna, Austria.
| | | | - Jack F Schijven
- Utrecht University, Domplein 29, 3512 JE Utrecht, Netherlands
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16
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Ma J, Liu H, Zhang C, Ding K, Chen R, Liu S. Joint response of chemistry and functional microbial community to oxygenation of the reductive confined aquifer. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 720:137587. [PMID: 32135291 DOI: 10.1016/j.scitotenv.2020.137587] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2019] [Revised: 02/23/2020] [Accepted: 02/25/2020] [Indexed: 06/10/2023]
Abstract
Oxygen can enter into reductive aquifer through natural and artificial processes. However, the joint response of groundwater chemistry and functional microbial communities to oxygenation is not well understood due to the gap between taxonomic and functional microbial composition. Here, two wells named CZK15 and CZK22 at the second confined aquifer in Central China were in situ aerated, and the chemical parameters of groundwater and microbial communities in bio-trapping sand sediment were analysed during aeration. The microbial metabolic functions related to C, N, S, Fe transformation were predicted by Functional Annotation of Prokaryotic Taxa (FAPROTAX) approach and some key functional genes, such as phe, nah, narG, and soxB were verified by the real-time quantitative Polymerase Chain Reaction (qPCR) method. The biomass was promoted, microbial diversity fluctuated, and microbial composition changed remarkably with aeration mainly constrained by reduction-oxidation (redox) variation and SO42- concentration. Among functional microbes, aerobic chemoheterotrophs including aromatic compound degraders (also especially for relative abundance of phe and some nah gene) and methylotrophs are dramatically enriched interpreting dissolved oxygen (DO) consumption and total organic carbon (TOC) decomposing in sediment. Whilst fermenters and methanogen expectedly decreased during aeration. Denitrifying microbes and narG gene relative abundance increased corresponding to the NO3- increase after aeration, while microbes for N2 fixation, ammonification, and nitrification decreased relating to the source of NH4+. The sulfide oxidation causing increased SO42- was reflected by the blooming of sulfur-oxidizing microbes and soxB gene. Some sulfate reducers persisted in sediment after aeration due to sufficient SO42- as substrate. Fe(II) was mainly chemically oxidized as iron-oxidizing microbes were of low abundance and tended to decrease with aeration. The iron-reducing bacteria Geobacteraceae increased with aeration corresponding to the increased Fe(III) oxides formation. The findings of this study could have important implications in understanding the biogeochemical behaviours with cyclic redox conditions.
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Affiliation(s)
- Jie Ma
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 388 Lumo Road, Wuhan 430074, PR China
| | - Hui Liu
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 388 Lumo Road, Wuhan 430074, PR China.
| | - Chen Zhang
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 388 Lumo Road, Wuhan 430074, PR China
| | - Kang Ding
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 388 Lumo Road, Wuhan 430074, PR China
| | - Rong Chen
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 388 Lumo Road, Wuhan 430074, PR China
| | - Shan Liu
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 388 Lumo Road, Wuhan 430074, PR China
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17
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Kirs M, Kisand V, Nelson CE, Dudoit T, Moravcik PS. Distinct bacterial communities in tropical island aquifers. PLoS One 2020; 15:e0232265. [PMID: 32353009 PMCID: PMC7192444 DOI: 10.1371/journal.pone.0232265] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Accepted: 04/10/2020] [Indexed: 11/23/2022] Open
Abstract
The groundwater biome is a poorly characterized habitat hypothesized to harbor uniquely diverse bacterial communities; the degree to which these communities differ from associated soils is a central question in environmental microbiology. We characterized the Bacterial community composition in 37 aquifer and 32 surface soil samples across the island of O‘ahu, Hawaiʻi. Several bacterial phyla (Acetothermia, Omnitrophica, Parcubacteria, Peregrinibacteria) relatively abundant in the aquifer samples were rare to absent in the soils. Immense bacterial diversity detected in the deep aquifers indicates that these environments are not as homogenous as expected, but provide various niches and energy sources for wide variety of bacteria. A small proportion of OTUs were widespread in all the basal (0.63%) and all the dike aquifer (0.31%) samples. However, these core bacteria comprised an average of 31.8% (ranging 16.2%-62.0%) and 15.4% (0.1%-31.5%) of all sequences isolated from the basal and dike aquifers respectively. Bacterial community composition correlated significantly with the sodium, sulfate, potassium, total dissolved solids, nitrate, conductivity, and pH in the basal aquifers, while phosphate and bicarbonate levels were also highly important when dike water samples were included in the analyses. This was consistent with high relative abundance of putative chemolithoautoroph taxa in the aquifer communities relative to soils. Targeted molecular and culture-based fecal indicator microbial analyses indicated good water quality of aquifers. The dominance of unique, deeply branching lineages in tropical aquifers emphasizes a large adaptive potential in O‘ahu’s aquifers; variability among groundwater samples suggests that aquifer habitats are surprisingly variable potentially harboring a variety of chemolithotrophic energy sources. Although parallel analyses of conventional and alternative indicators indicated good groundwater quality, this study calls for groundwater monitoring programs which would consider public as well as ecosystem health.
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Affiliation(s)
- Marek Kirs
- Water Resources Research Center, University of Hawaiʻi at Mānoa, Honolulu, HI, United States of America
- * E-mail:
| | - Veljo Kisand
- Institute of Technology, Tartu University, Tartu, Estonia
| | - Craig E. Nelson
- Department of Oceanography and UH Sea Grant, Daniel K. Inouye Center for Microbial Oceanography: Research and Education, University of Hawaiʻi at Mānoa, Honolulu, HI, United States of America
| | - Tineill Dudoit
- Water Resources Research Center, University of Hawaiʻi at Mānoa, Honolulu, HI, United States of America
| | - Philip S. Moravcik
- Water Resources Research Center, University of Hawaiʻi at Mānoa, Honolulu, HI, United States of America
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18
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Guo L, Wang G, Sheng Y, Shi Z, Sun X. Groundwater microbial communities and their connection to hydrochemical environment in Golmud, Northwest China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 695:133848. [PMID: 31422331 DOI: 10.1016/j.scitotenv.2019.133848] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2019] [Revised: 08/07/2019] [Accepted: 08/07/2019] [Indexed: 05/20/2023]
Abstract
Groundwater microbial community normally co-varies with the associated geochemical transect in some hydrogeological sections along flowpath. However, in hydrogeological section with similar geochemical transect (e.g., salinity, ion compositions) how microbial community in groundwater varies are poorly understood. In this study, groundwater samples were collected at six boreholes vertically and horizontally along a generalized groundwater flowpath in the Golmud area, Qaidam Basin, northwest China. High-throughput sequencing and multivariate statistical analysis were applied to explore the underlying relationships between microbial community structure and hydrogeochemical environment. The result showed that microbial communities changed considerably at both horizontal and vertical scales, although the groundwater samples were of relatively stable ionic compositions and hydrochemical types. The dominant bacterial phyla in groundwater varied from Alphaproteobacteria, Betaproteobacteria and Flavobacteriia in 'phreatic and phreatic-like' groundwater in the recharge area to Gammaproteobacteria in the confined groundwater in the lacustrine plain. At both vertical and horizontal scale, Gammaproteobacteria increased while Alpha- and Betaproteobacteria decreased as the function of distance. Genera Roseateles, Aquabacterium, Sphingomonas, Acinetobacter, Acidovorax and Flavobacterium presented in phreatic groundwater, while Pseudomonas, Hydrogenophaga and Perlucidibaca presented in confined groundwater. Spatial distribution of microbial community was highly affected by the pH (for 'phreatic and phreatic-like' groundwater) and ORP (for confined groundwater) of groundwater that had similar salinity or ion compositions. This research extends our knowledge about microbial communities' variation along groundwater flowpath in studied area and similar arid or semi-arid areas.
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Affiliation(s)
- Liang Guo
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing 100083, China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, China
| | - Guangcai Wang
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing 100083, China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, China.
| | - Yizhi Sheng
- School of Environment, Tsinghua University, Beijing 100084, China
| | - Zheming Shi
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing 100083, China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, China
| | - Xiaoyi Sun
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing 100083, China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, China
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19
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Wang M, Deng B, Fu X, Sun H, Xu Z. Characterizations of microbial diversity and machine oil degrading microbes in machine oil contaminated soil. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 255:113190. [PMID: 31541828 DOI: 10.1016/j.envpol.2019.113190] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2019] [Revised: 09/02/2019] [Accepted: 09/05/2019] [Indexed: 06/10/2023]
Abstract
Microbial diversity in machine oil contaminated soil was determined by high-throughput amplicon sequencing technology. The diversity of culturable microbes in the contaminated soil was further characterized using polymerase chain reaction method. Proteobacteria and Bacteroidetes were the most dominant phyla and occupied 52.73 and 16.77%, respectively, while the most abundant genera were Methylotenera (21.62%) and Flavobacterium (3.06%) in the soil. In the culturable microbes, the major phyla were Firmicutes (46.15%) and Proteobacteria (37.36%) and the most abundant genera were Bacillus (42.86%) and Aeromonas (34.07%). Four isolated microbes with high machine oil degradation efficiency were selected to evaluate their characteristics on the oil degradation. All of them reached their highest oil degradation rate after 7 days of incubation. Most of them significantly increased their oil degradation rate by additional carbon or organic nitrogen source in the incubation medium. The oil degradation rate by combination of the four microbes at the same inoculation level was also higher than the rate from each individual microbe. The protocol and findings of this study are very useful for developing micro-bioremediation method to eliminate machine oil contaminants from soil.
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Affiliation(s)
- Mengjiao Wang
- School of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong, Shaanxi, China; Shaanxi Provincial Engineering Research Center of Edible and Medicinal Microbes, Shaanxi University of Technology, Hanzhong, Shaanxi, China; Shaanxi Key Laboratory of Bio-resources, Shaanxi University of Technology, Hanzhong, Shaanxi, China
| | - Baiwan Deng
- School of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong, Shaanxi, China; Shaanxi Provincial Engineering Research Center of Edible and Medicinal Microbes, Shaanxi University of Technology, Hanzhong, Shaanxi, China
| | - Xun Fu
- School of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong, Shaanxi, China
| | - Haiyan Sun
- School of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong, Shaanxi, China; Shaanxi Key Laboratory of Bio-resources, Shaanxi University of Technology, Hanzhong, Shaanxi, China
| | - Zhimin Xu
- School of Nutrition and Food Sciences, Louisiana State University, Baton Rouge, LA, USA.
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20
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Song Y, Mao G, Gao G, Bartlam M, Wang Y. Structural and Functional Changes of Groundwater Bacterial Community During Temperature and pH Disturbances. MICROBIAL ECOLOGY 2019; 78:428-445. [PMID: 30706112 DOI: 10.1007/s00248-019-01333-7] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2018] [Accepted: 01/17/2019] [Indexed: 06/09/2023]
Abstract
In this study, we report the characteristics of a microbial community in sampled groundwater and elucidate the effects of temperature and pH disturbances on bacterial structure and nitrogen-cycling functions. The predominant phyla of candidate OD1, candidate OP3, and Proteobacteria represented more than half of the total bacteria, which clearly manifested as a "low nucleic acid content (LNA) bacteria majority" type via flow cytometric fingerprint. The results showed that LNA bacteria were more tolerant to rapid changes in temperature and pH, compared to high nucleic acid content (HNA) bacteria. A continuous temperature increase test demonstrated that the LNA bacterial group was less competitive than the HNA bacterial group in terms of maintaining their cell intactness and growth potential. In contrast, the percentage of intact LNA bacteria was maintained at nearly 70% with pH decrease, despite a 50% decrease in total intact cells. Next-generation sequencing results revealed strong resistance and growth potential of phylum Proteobacteria when the temperature increased or the pH decreased in groundwater, especially for subclasses α-, β-, and γ-Proteobacteria. In addition, relative abundance of nitrogen-related functional genes by qPCR showed no difference in nitrifiers or denitrifiers within 0.45 μm-captured and 0.45 μm-filterable bacteria due to phylogenetic diversity. One exception was the monophyletic anammox bacteria that belong to the phylum Planctomycetes, which were mostly captured on a 0.45-μm filter. Furthermore, we showed that both temperature increase and pH decrease could enhance the denitrification potential, whereas the nitrification and anammox potentials were weakened.
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Affiliation(s)
- Yuhao Song
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin, 300350, China
| | - Guannan Mao
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin, 300350, China
| | - Guanghai Gao
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin, 300350, China
| | - Mark Bartlam
- College of Life Sciences, Nankai University, Tianjin, 300071, China.
| | - Yingying Wang
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin, 300350, China.
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21
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Luk AW, Beckmann S, Manefield M. Dependency of DNA extraction efficiency on cell concentration confounds molecular quantification of microorganisms in groundwater. FEMS Microbiol Ecol 2019; 94:5066166. [PMID: 30137345 DOI: 10.1093/femsec/fiy146] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2018] [Accepted: 08/01/2018] [Indexed: 12/13/2022] Open
Abstract
Quantification of microbes in water systems is essential to industrial practices ranging from drinking water and wastewater treatment to groundwater remediation. While quantification using DNA-based molecular methods is precise, the accuracy is dependent on DNA extraction efficiencies. We show that the DNA yield is strongly impacted by the cell concentration in groundwater samples (r = -0.92, P < 0.0001). This has major implications for industrial applications using quantitative polymerase chain reaction (qPCR) to determine cell concentrations in water, including bioremediation. We propose a simple normalization method using a DNA recovery ratio, calculated with the total cell count and DNA yield. Application of this method to enumeration of bacteria and archaea in groundwater samples targeting phylogenetic markers (16S rRNA) demonstrated an increased goodness of fit after normalization (7.04 vs 0.94 difference in Akaike's information criteria). Furthermore, normalization was applied to qPCR quantification of functional genes and combined with DNA sequencing of archaeal and bacterial 16S rRNA genes to monitor changes in abundance of methanogenic archaea and sulphate-reducing bacteria in groundwater. The integration of qPCR and DNA sequencing with appropriate normalization enables high-throughput quantification of microbial groups using increasingly affordable and accessible techniques. This research has implications for microbial ecology and engineering research as well as industrial practice.
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Affiliation(s)
- Alison Ws Luk
- School of Chemical Engineering, University of New South Wales, NSW 2052, Australia
| | - Sabrina Beckmann
- School of Chemical Engineering, University of New South Wales, NSW 2052, Australia
| | - Mike Manefield
- School of Chemical Engineering, University of New South Wales, NSW 2052, Australia.,School of Civil and Environmental Engineering, University of New South Wales, NSW 2052, Australia
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22
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Shi J, Zhang B, Qiu R, Lai C, Jiang Y, He C, Guo J. Microbial Chromate Reduction Coupled to Anaerobic Oxidation of Elemental Sulfur or Zerovalent Iron. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019; 53:3198-3207. [PMID: 30776217 DOI: 10.1021/acs.est.8b05053] [Citation(s) in RCA: 79] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Chromate (Cr(VI)), as one of ubiquitous contaminants in groundwater, has posed a major threat to public health and ecological environment. Although various electron donors (e.g., organic carbon, hydrogen, and methane) have been proposed to drive chromate removal from contaminated water, little is known for microbial chromate reduction coupled to elemental sulfur (S(0)) or zerovalent iron (Fe(0)) oxidation. This study demonstrated chromate could be biologically reduced by using S(0) or Fe(0) as inorganic electron donor. After 60-day cultivation, the sludge achieved a high Cr(VI) removal efficiency of 92.9 ± 1.1% and 98.1 ± 1.2% in two independent systems with S(0) or Fe(0) as the sole electron donor, respectively. The deposited Cr(III) was identified as the main reduction product based on X-ray photoelectron spectroscopy. High-throughput 16S rRNA gene sequencing indicated that Cr(VI) reduction coupled to S(0) or Fe(0) oxidation was mediated synergically by a microbial consortia. In such the consortia, S(0)- or Fe(0)-oxidizing bacteria (e.g., Thiobacillus or Ferrovibrio) could generate volatile fatty acids as metabolites, which were further utilized by chromate-reducing bacteria (e.g., Geobacter or Desulfovibrio) to reduce chromate. Our findings advance our understanding on microbial chromate reduction supported by solid electron donors and also offer a promising process for groundwater remediation.
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Affiliation(s)
- Jiaxin Shi
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution , China University of Geosciences (Beijing) , Beijing 100083 , P. R. China
| | - Baogang Zhang
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution , China University of Geosciences (Beijing) , Beijing 100083 , P. R. China
| | - Rui Qiu
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution , China University of Geosciences (Beijing) , Beijing 100083 , P. R. China
| | - Chunyu Lai
- Advanced Water Management Centre , The University of Queensland , St Lucia , Queensland 4072 , Australia
| | - Yufeng Jiang
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution , China University of Geosciences (Beijing) , Beijing 100083 , P. R. China
| | - Chao He
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution , China University of Geosciences (Beijing) , Beijing 100083 , P. R. China
| | - Jianhua Guo
- Advanced Water Management Centre , The University of Queensland , St Lucia , Queensland 4072 , Australia
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23
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Paufler S, Grischek T, Herlitzius J, Feller J, Kulakov VV. Manganese release linked to carbonate dissolution during the start-up phase of a subsurface iron removal well in Khabarovsk, Russia. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 650:1722-1733. [PMID: 30273731 DOI: 10.1016/j.scitotenv.2018.09.319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2018] [Revised: 09/24/2018] [Accepted: 09/24/2018] [Indexed: 06/08/2023]
Abstract
Subsurface iron removal (SIR) is a proven pre-treatment technology for removing dissolved iron and manganese from groundwater. The start-up phase of a SIR well and the proper development of the reaction zone around the well are crucial for its subsequent performance. This study evaluates the start-up phase of a SIR production well in Khabarovsk, Russia during the first 194 SIR cycles. A strong release of manganese was observed, which led to concentrations twice as high as the background value of the pristine groundwater. Regular monitoring of the production well and its three adjacent observation wells showed that iron removal began immediately after start-up and that the reaction zone was completely formed within 25 SIR cycles. Closed-bottle batch tests and a flow-through leaching test revealed that the grain size of the aquifer material and groundwater pH are the primary controls on manganese release. During infiltration phases the dissolution of manganese-bearing carbonate minerals was caused by direct oxidation by O2, whereas the low groundwater pH of 6 seemed to be responsible for the manganese release during extraction.
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Affiliation(s)
- S Paufler
- Dresden University of Applied Sciences, Friedrich-List-Platz 1, 01069 Dresden, Germany.
| | - T Grischek
- Dresden University of Applied Sciences, Friedrich-List-Platz 1, 01069 Dresden, Germany
| | - J Herlitzius
- Arcadis Germany GmbH, EUREF-Campus 10, 10829 Berlin, Germany
| | - J Feller
- Dresden University of Applied Sciences, Friedrich-List-Platz 1, 01069 Dresden, Germany
| | - V V Kulakov
- Institute of Water and Ecological Problems, FEB RAS, 680000 Khabarovsk, Russia
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24
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Emerson D. The role of iron-oxidizing bacteria in biocorrosion: a review. BIOFOULING 2018; 34:989-1000. [PMID: 30642207 DOI: 10.1080/08927014.2018.1526281] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Revised: 09/13/2018] [Accepted: 09/13/2018] [Indexed: 06/09/2023]
Abstract
Lithotrophic iron-oxidizing bacteria depend on reduced iron, Fe(II), as their primary energy source, making them natural candidates for growing in association with steel infrastructure and potentially contributing to microbially influenced corrosion (MIC). This review summarizes recent work on the role of iron-oxidizing bacteria (FeOB) in MIC. By virtue of producing complex 3-dimensional biofilms that result from the accumulation of iron-oxides, FeOB may aid in the colonization of steel surfaces by other microbes involved in MIC. Evidence points to a successional pattern occurring whereby FeOB are early colonizers of mild steel (MS), followed by sulfate-reducing bacteria and other microbes, although studies of aged corrosion products indicate that FeOB do establish a long-term presence. There is evidence that only specific clades of FeOB, with unique adaptations for growing on steel surfaces are part of the MIC community. These are discussed in the context of the larger MIC microbiome.
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Affiliation(s)
- David Emerson
- a Bigelow Laboratory for Ocean Sciences , East Boothbay , ME , USA
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25
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Su JF, Liang DH, Wei L, Luo XX. Coupled Carbon, Mn(II), and Nitrogen Cycles in a Mixotrophic Biofilm Reactor and Microbial Community Structure. Chem Eng Technol 2018. [DOI: 10.1002/ceat.201700306] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Jun Feng Su
- Xi'an University of Architecture and Technology; School of Environmental and Municipal Engineering; No. 13 Yanta Street, Beilin District 710055 Xi'an China
- State Key Laboratory of Urban Water Resource and Environment; School of Municipal and Environmental Engineering; No. 73 Huanghe Road, Nangang District 150090 Harbin China
| | - Dong Hui Liang
- Xi'an University of Architecture and Technology; School of Environmental and Municipal Engineering; No. 13 Yanta Street, Beilin District 710055 Xi'an China
| | - Li Wei
- State Key Laboratory of Urban Water Resource and Environment; School of Municipal and Environmental Engineering; No. 73 Huanghe Road, Nangang District 150090 Harbin China
| | - Xian Xin Luo
- Xi'an University of Architecture and Technology; School of Environmental and Municipal Engineering; No. 13 Yanta Street, Beilin District 710055 Xi'an China
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26
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Karczewski K, Göbel P, Meyer EI. Do composition and diversity of bacterial communities and abiotic conditions of spring water reflect characteristics of groundwater ecosystems exposed to different agricultural activities? Microbiologyopen 2018; 8:e00681. [PMID: 30006971 PMCID: PMC6460265 DOI: 10.1002/mbo3.681] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Revised: 05/29/2018] [Accepted: 05/31/2018] [Indexed: 01/21/2023] Open
Abstract
Modern agricultural practices have undeniably increased global food production. On the other hand, agricultural practices not only lead to a degradation of natural ecosystems but also affect the functioning of ecosystems and the related services they provide. Even though impacts of anthropogenic activities vary across ecosystems, freshwater ecosystems are among those affected to a higher degree. In comparison to surface water ecosystems, groundwater ecosystems are less affected by anthropogenic pollutants, as the overlaying soil retains organic and inorganic substances. However, it has become evident that the excessive use of fertilizers has led to the eutrophication of many aquifers. Bacterial communities, which significantly contribute to the cycling of matter due to their metabolic capacities, are prone to environmental perturbations, and structural variation of bacterial communities may consequently affect the functioning of groundwater ecosystems. Our present paper intends to evaluate the impact of anthropogenic activities on environmental conditions as well as on the structural properties of bacterial communities in groundwater. We repeatedly sampled emerging groundwater at five spring sites belonging to different catchments and determined the concentration of abiotic variables as well as the diversity and composition of bacterial communities on a local scale. We hypothesized that anthropogenic activities influence the concentration of abiotic variables, especially of nitrate, as well as the composition and diversity of bacterial communities in groundwater. Our results show that underground spring catchment areas only slightly differ regarding the concentration of abiotic variables as well as the structure of bacterial communities. Furthermore, abiotic variables, presumably influenced by anthropogenic activities, do not correlate with the diversity and composition of bacterial communities. Although supported only by circumstantial evidence, we suggest that upwelling groundwater from the deeper aquifer affects the diversity and composition of bacterial communities, and we argue that bacterial communities act as useful indicators for environmental changes.
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Affiliation(s)
- Karsten Karczewski
- Institute for Evolution and Biodiversity, University of Münster, Münster, Germany
| | - Patricia Göbel
- Institute of Geology and Palaeontology, University of Münster, Münster, Germany
| | - Elisabeth I Meyer
- Institute for Evolution and Biodiversity, University of Münster, Münster, Germany
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