Raman spectroscopy applied to diatoms (microalgae, Bacillariophyta): Prospective use in the environmental diagnosis of freshwater ecosystems

Response processes to water quality changes driven by the dynamic regeneration of the surface microlayer film in slow-flowing freshwater bodies

The freshwater surface microlayer film (SMF) is a dynamically evolving micro-ecosystem closely related to water quality and microbial growth in water. However, the mechanisms of dynamic regeneration of SMF after their destruction and their impacts on the aquatic environment are still largely unknown. Herein, we modeled the dynamic processes of SMF destruction and recovery in the natural environment by constructing a water-SMF ecosystem. Chemical and biological changes in the dynamic regeneration of SMF were investigated. The results showed that the dynamic regeneration of SMF was very fast, with a regeneration thickness of up to 300 ± 50 μm in two days, and at the same time, it would rapidly enrich organic matter and Fe ions. In addition, the cyclic dynamic regeneration process of SMF is significantly correlated with the surge metabolic growth of microorganisms associated with organic matter metabolism (e.g., Methylophilus, Nevskia) and iron-redox-associated (e.g., Curvibacter). The experimental results suggest that the microbial-mediated process of iron-organic matter coupled oxidation-reduction in SMF may be another important mechanism driving water quality changes. Overall, our study provides valuable theoretical guidance for predicting changes in water quality in slow-flowing water bodies.

Baseline Raman Spectral Fingerprints of Zebrafish Embryos and Larvae

As a highly sensitive vibrational technique, Raman spectroscopy (RS) can provide valuable chemical and molecular data useful to characterise animal cell types, tissues and organs. As a label-free, rapid detection method, RS has been considered a valuable asset in forensics, biology and medicine. The technique has been applied to zebrafish for various purposes, including physiological, biochemical or bioaccumulation analyses. The available data point out its potential for the early diagnosis of detrimental effects elicited by toxicant exposure. Nevertheless, no baseline spectra are available for zebrafish embryos and larvae that could allow for suitable planning of toxicological assessments, comparison with toxicant-elicited spectra or mechanistic understanding of biochemical and physiological responses to the exposures. With this in mind, this work carried out a baseline characterisation of Raman spectra of zebrafish embryos and larvae throughout early development. Raman spectra were recorded from the iris, forebrain, melanocytes, heart, muscle and swim bladder between 24 and 168 h post-fertilisation. A chemometrics approach, based on partial least-squares discriminant analysis (PLS-DA), was used to obtain a Raman characterisation of each tissue or organ. In total, 117 Raman bands were identified, of which 24 were well represented and, thus, retained in the data analysed. Only three bands were found to be common to all organs and tissues. The PLS-DA provided a tentative Raman spectral fingerprint typical of each tissue or organ, reflecting the ongoing developmental dynamics. The bands showed frequencies previously assigned to collagen, cholesterol, various essential amino acids, carbohydrates and nucleic acids.

Impact of inorganic mercury on carotenoids in freshwater algae: Insights from single-cell resonance Raman spectroscopy

The influence of inorganic mercury (Hg(II)) exposure on photosynthetic microorganisms and their pigments remains understudied. Here, we employed resonance Raman (RR) spectroscopy to investigate the responses of two freshwater phytoplankton species, the green alga Chlamydomonas reinhardtii and the diatom Cyclotella meneghiniana to Hg(II) exposure. We selectively recorded the spectral RR signature of carotenoids in intact cells exposed to concentrations of 10 nM and 100 nM of Hg(II), representative for contaminated environment and unexposed control cells. A two-hour exposure of C. reinhardtii resulted in a slight decrease in lutein and β-carotene levels, while total carotenoids RR band broadening, as revealed by the FWHM of the υ1(C=C) stretching mode from averaged RR spectra, suggested conformational changes in pigments. Higher Hg(II) concentration induced more pronounced conformational changes. Similarly, a two-hour exposure of C. meneghiniana resulted in slight decreased level of the fucoxanthin, while diadinoxanthin showed an opposite trend compared to control: when fucoxanthin decreased, diadinoxanthin increased under 10 nM Hg (II) exposure. At higher concentrations, the decrease in fucoxanthin was less pronounced, accompanied by a broadening of the band area, (with FHHM increased), indicating possible conformer occurrence in response to Hg-induced stress. The changes in the main carotenoid species of the two algae are species-specific, Hg(II) concentration-specific, and dependent on exposure time. The calculated spectral differences in absorbances from UV-VIS spectra of methanol extracts from each group supported the main findings obtained by RR, though with caution due to the selective extraction efficiency of the respective carotenoids. This study highlighted for a first time the capability of single-cell RR spectroscopy as a valuable tool for toxicity assessment and for comprehending early-stage alterations in carotenoid metabolism due to toxic metal exposure in vivo.

Multimodal non-invasive probing of stress-induced carotenogenesis in the cells of microalga Bracteacoccus aggregatus

Microalgae are the richest source of natural carotenoids-accessory photosynthetic pigments used as natural antioxidants, safe colorants, and nutraceuticals. Microalga Bracteacoccus aggregatus IPPAS C-2045 responds to stresses, including high light, with carotenogenesis-gross accumulation of secondary carotenoids (the carotenoids structurally and energetically uncoupled from photosynthesis). Precise mechanisms of cytoplasmic transport and subcellular distribution of the secondary carotenoids under stress are still unknown. Using multimodal imaging combining micro-Raman imaging (MRI), fluorescent lifetime (τ) imaging (FLIM), and transmission electron microscopy (TEM), we monitored ultrastructural and biochemical rearrangements of B. aggregatus cells during the stress-induced carotenogenesis. MRI revealed a decline in the diversity of molecular surrounding of the carotenoids in the cells compatible with the relocation of the bulk of the carotenoids in the cell from functionally and structurally heterogeneous photosynthetic apparatus to the more homogenous lipid matrix of the oleosomes. Two-photon FLIM highlighted the pigment transformation in the cell during the stress-induced carotenogenesis. The structures co-localized with the carotenoids with shorter τ (mainly chloroplast) shrunk, whereas the structures harboring secondary carotenoids with longer τ (mainly oleosomes) expanded. These changes were in line with the ultrastructural data (TEM). Fluorescence of B. aggregatus carotenoids, either in situ or in acetone extracts, possessed a surprisingly long lifetime. We hypothesize that the extension of τ of the carotenoids is due to their aggregation and/or association with lipids and proteins. The propagation of the carotenoids with prolonged τ is considered to be a manifestation of the secondary carotenogenesis suitable for its non-invasive monitoring with multimodal imaging.

Spectral insights: Navigating the frontiers of biomedical and microbiological exploration with Raman spectroscopy

Raman spectroscopy (RS), a powerful analytical technique, has gained increasing recognition and utility in the fields of biomedical and biological research. Raman spectroscopic analyses find extensive application in the field of medicine and are employed for intricate research endeavors and diagnostic purposes. Consequently, it enjoys broad utilization within the realm of biological research, facilitating the identification of cellular classifications, metabolite profiling within the cellular milieu, and the assessment of pigment constituents within microalgae. This article also explores the multifaceted role of RS in these domains, highlighting its distinct advantages, acknowledging its limitations, and proposing strategies for enhancement.

Nanorod reassembling on a sprayed SERS substrate under confined evaporation inducing ultrasensitive TPhT detection

Triphenyltin is an estrogen like pollutant that poses significant environmental threats due to its highly accumulative toxicity. To improve regulation, a fast and sensitive detection method is urgently needed. SERS can capture fingerprint information and is capable of trace detection, making it an ideal solution. Here, we present a sprayed substrate comprised of lightconfining structures and gold nanorod assemblies that are easy to prepare, low-cost, and can form dense hotspots under confined evaporation. The substrates are three-layered: initially, a gold nanorod layer is sprayed as a support, then sputter Ag film on the surface to form a lightconfining structure, followed by another gold nanorod layer sprayed on the Ag film. The coupling of nanorod assembly with lightconfining Ag films leads to 10-fold sensitivity. In addition, sample droplet evaporation in a limited area called confined evaporation contributes to nanorod migration and reassembly on the corner of the substrate, enhancing analytes absorption, and substantially lowered the detection limits. By systematically evaluating the substrate performance, we were able to obtain an average enhancement factor of 3.31 × 106. After confined evaporation, the detection limit reached 10-18 M for R6G and for triphenyltin, it achieved 10-9 M. This novel method represents a significant advancement toward SERS application in detecting trace pollutants.

Novel Approach to Freshwater Diatom Profiling and Identification Using Raman Spectroscopy and Chemometric Analysis

(1) An approach with great potential for fast and cost-effective profiling and identification of diatoms in lake ecosystems is presented herein. This approach takes advantage of Raman spectroscopy. (2) The study was based on the analysis of 790 Raman spectra from 29 species, belonging to 15 genera, 12 families, 9 orders and 4 subclasses, which were analysed using chemometric methods. The Raman data were first analysed by a partial least squares regression discriminant analysis (PLS-DA) to characterise the diatom species. Furthermore, a method was developed to streamline the integrated interpretation of PLS-DA when a high number of significant components is extracted. Subsequently, an artificial neural network (ANN) was used for taxa identification from Raman data. (3) The PLS interpretation produced a Raman profile for each species reflecting its biochemical composition. The ANN models were useful to identify various taxa with high accuracy. (4) Compared to studies in the literature, involving huge datasets one to four orders of magnitude larger than ours, high sensitivity was found for the identification of Achnanthidium exiguum (67%), Fragilaria pararumpens (67%), Amphora pediculus (71%), Achnanthidium minutissimum (80%) and Melosira varians (82%).

Microalgae Bioactive Carbohydrates as a Novel Sustainable and Eco-Friendly Source of Prebiotics: Emerging Health Functionality and Recent Technologies for Extraction and Detection

There is a global interest in the novel consumption, nutritional trends, and the market of new prebiotic sources and their potential functional impacts. Commercially available nutritional supplements based on microalgae that are approved to be edible by FDA, like Arthrospira platensis (Cyanobacteria) and Chlorella vulgaris (Chlorophyta) become widely attractive. Microalgae are rich in carbohydrates, proteins, and polyunsaturated fatty acids that have high bioactivity. Recently, scientists are studying the microalgae polysaccharides (PS) or their derivatives (as dietary fibers) for their potential action as a novel prebiotic source for functional foods. Besides, the microalgae prebiotic polysaccharides are used for medication due to their antioxidant, anticancer, and antihypertensive bioactivities. This review provides an overview of microalgae prebiotics and other macromolecules' health benefits. The phytochemistry of various species as alternative future sources of novel polysaccharides were mentioned. The application as well as the production constraints and multidisciplinary approaches for evaluating microalgae phytochemistry were discussed. Additionally, the association between this potential of combining techniques like spectroscopic, chromatographic, and electrochemical analyses for microalgae sensation and analysis novelty compared to the chemical methods was emphasized.

Environmental diagnosis with Raman Spectroscopy applied to diatoms

Freshwater quality has been changing due to the ever greater use of water resources and the contamination load resulting from human activities. Management of these systems, thus, requires constant diagnose of water quality with fast and efficient methodologies. The conventional methods adopted are, however, time-consuming, often very expensive, and require specialised expertise. Raman spectroscopy (RS) is a simple, fast and label-free technique that can be applied to environmental diagnosis using diatoms. Here, we developed a diagnostic method based on Raman spectroscopy applied to freshwater diatoms. For this, Raman spectra were recorded from diatoms of three lakes of a natural city park. The data acquired was analysed by chemometrics methods to describe the data (Partial Least Squares Regression), infer relationships in the dataset (Cluster Analysis) and produce classification models (Artificial Neural Network). The classification models developed diagnosed the lakes with excellent accuracy (89%) without requiring taxonomic information about the diatom species recorded. This study provides a proof-of-concept for the application of diatom Raman spectroscopy to diagnosing water quality, laying an important foundation for future environmental studies aiming at assessing freshwater systems, to be replicated at larger scales and to varied geographic settings.

Inter-coffee-ring effects boost rapid and highly reliable SERS detection of TPhT on a light-confining structure

Triphenyltin chloride (TPhT) is a widely applied toxic compound that poses a significant threat to humans and the environment. Surface-enhanced Raman spectroscopy (SERS), capable of non-destructive, rapid, and trace detection, is desirable to better evaluate its distribution and content. However, a sensitive method with simple measuring protocols which maintains excellent reproducibility remains challenging. Here, we proposed an inter-coffee-ring effect to accelerate the sampling and measuring process while maintaining highly reproducible results. Two overlapping coffee-rings are formed through sequenced drying of gold nanorod colloids and a gold nanorod TPhT mixture on a superhydrophobic light-confining structure. Both the gold nanorods and the TPhT are enriched in the overlapping region. The gold nanorods reordered in such an area under the inter-coffee-ring effect yielded vast numbers of consistent hotspots at the sub-2 nm level. Such consistency leads to excellent SERS performance under the light-confining effect induced by the nanoarray substrates. The detection limits of the probe molecule R6G reached 10⁻¹² M, and TPhT reached 10⁻⁸ M while achieving excellent stability and reproducibility, and a linear regression coefficient above 0.99 was achieved for TPhT. Crucially, the visible nature of the inter-coffee-ring overlap enabled rapid measurements, thus providing robust support for detecting environmental pollutants.

Nanoparticles reassembling in the inter coffee-ring region simply through sequenced drying of two droplets enabled ultrasensitive and highly reliable SERS detection. A rapid test protocol is realized by exciting the visible inter-coffee-ring mark.